RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17848
(363 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 249 bits (636), Expect = 4e-77
Identities = 190/364 (52%), Positives = 241/364 (66%), Gaps = 60/364 (16%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
+I R+VS+V+ G++ FK+ERN+DQAS+PDNT AQK+ L+G+++T+ T++ L
Sbjct: 265 FTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSIL 324
Query: 61 KPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 120
PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+TKRQ
Sbjct: 325 TPRIKVGRDVVQKAQTKEQ-------ADFAIEALAKAKFERLFRWILTRVNKALDKTKRQ 377
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
GASF+GILD+AGFEIFE+NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW FID
Sbjct: 378 GASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFID 437
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
FGLDLQP I+LI++P
Sbjct: 438 FGLDLQPCIELIERPT-------------------------------------------- 453
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDF-RGVADFAIV 299
P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+
Sbjct: 454 --------NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCIL 505
Query: 300 HYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFG 359
HYAGKV Y+A WL KNMDPLN+NV SLL S D FVA +WKD + + Q T+
Sbjct: 506 HYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESS 565
Query: 360 ARTR 363
+
Sbjct: 566 LPSA 569
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 237 bits (606), Expect = 3e-72
Identities = 146/344 (42%), Positives = 199/344 (57%), Gaps = 57/344 (16%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
+++F+ ++++ G M+FKQ +QA A+K+A L G++ ++ KA L
Sbjct: 292 FTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALL 351
Query: 61 KPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 120
KP++KVG + VTK Q Q V +V A++K+ Y+RMF WLV R+N++LD TK +
Sbjct: 352 KPKVKVGTEMVTKGQNMNQ-------VVNSVGALAKSLYDRMFNWLVRRVNKTLD-TKAK 403
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
+IG+LD+AGFEIF+ NSFEQLCINYTNE+LQQ FNH MFILEQEEY++EGI W+FID
Sbjct: 404 RNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFID 463
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
FG+DLQ IDLI+KPMGI+++L+EEC FPKA D+SF +KL Q+H
Sbjct: 464 FGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGK------------- 510
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVH 300
+G A F + H
Sbjct: 511 ------------------------------------NRMFTKPGKPTRPNQGPAHFELHH 534
Query: 301 YAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
YAG V YS WL KN DP+NENVV+LL S++P VA ++K E
Sbjct: 535 YAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPE 578
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 229 bits (586), Expect = 7e-70
Identities = 124/363 (34%), Positives = 182/363 (50%), Gaps = 63/363 (17%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
+IF+I++ ++ G+++F++ + A L D T + + G++ + + KA +
Sbjct: 289 FSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALM 347
Query: 61 KPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 120
+PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L + ++
Sbjct: 348 EPRILAGRDLVAQHLNVEK-------SSSSRDALVKALYGRLFLWLVKKINNVLCQERKA 400
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
FIG+LD++GFEIF++NSFEQLCINYTNEKLQQ FNH MF LEQEEY +E I W FID
Sbjct: 401 --YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFID 458
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
FGLD Q TIDLID
Sbjct: 459 FGLDSQATIDLIDGR--------------------------------------------- 473
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVH 300
+P GI+ALLDE+ FP ATD + + KL S+ + +F + H
Sbjct: 474 --------QPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTH 525
Query: 301 YAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGA 360
YAG+V Y + WL KN DPL +++ + S D V ++ D I A++ + A
Sbjct: 526 YAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAA 585
Query: 361 RTR 363
+ +
Sbjct: 586 QYK 588
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 226 bits (578), Expect = 3e-68
Identities = 146/342 (42%), Positives = 193/342 (56%), Gaps = 59/342 (17%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
AI+++ AVM +G+++FKQ++ +QA VA K A L+GL+ E+ KA
Sbjct: 294 FSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALC 353
Query: 61 KPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 120
PR+ VG + VTK +T + V +V A++KA YE+MF W+V RIN+ LD TK+
Sbjct: 354 YPRVGVGNEAVTKGETVSE-------VHNSVGALAKAVYEKMFLWMVIRINQQLD-TKQP 405
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
FIG+LD+AGFEIF+ NSFEQLCIN+TNEKLQQ FNH MF+LEQEEY++EGIEW+FID
Sbjct: 406 RQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFID 465
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
FG+DL I+LI+KPMGI ++L+EEC FPKATD SF KL H
Sbjct: 466 FGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLGK------------- 512
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVH 300
+ K K + A F++VH
Sbjct: 513 --------------------------------------SNNFQKPKPAKGKAEAHFSLVH 534
Query: 301 YAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKD 342
YAG VDY+ WL KN DPLNE V+ L Q S +A ++
Sbjct: 535 YAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFAT 576
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 217 bits (554), Expect = 2e-65
Identities = 96/348 (27%), Positives = 154/348 (44%), Gaps = 58/348 (16%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQF----KQERNSDQASLPDNTVAQKIAKLLGLSITEMT 56
+ +I+RI++A++ G++ F +Q + + D A L ++
Sbjct: 250 LKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLS 309
Query: 57 KAFLKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDR 116
A I G + + N+ ++ +A++KA YER+F WLV++IN ++
Sbjct: 310 IALCYRSISTGVGKRCSVISVPM---DCNQAAYSRDALAKALYERLFNWLVSKINTIIN- 365
Query: 117 TKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 176
+ IGILD+ GFE+F+ NSFEQL IN+ NEKLQQLF EQEEY REGIEW
Sbjct: 366 CTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEW 425
Query: 177 KFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFR 236
K I++ + + KP+G+++LLDE C K+TD++F++ + + ++ +
Sbjct: 426 KNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSY--- 482
Query: 237 GVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF 296
K G F
Sbjct: 483 -----------------------------------------------VVSKDRSIGDTCF 495
Query: 297 AIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
+ HYAG V Y +L KN D L +++S +Q S DP V ++
Sbjct: 496 RLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTR 543
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 207 bits (527), Expect = 2e-61
Identities = 96/281 (34%), Positives = 141/281 (50%), Gaps = 17/281 (6%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
+ IFRI++ ++ G+++F + A P + L+G+ EM
Sbjct: 255 ISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLC 314
Query: 61 KPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 120
++ + K +K A +A++K Y +F W+V+ +N++L T +Q
Sbjct: 315 HRKLATATETYIKPISKLH-------AINARDALAKHIYANLFNWIVDHVNKALHSTVKQ 367
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
SFIG+LD+ GFE FE+NSFEQ CINY NEKLQQ FN +F LEQEEY +E I W ID
Sbjct: 368 -HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLID 426
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
F D QP I+LI+ MG++ LLDEEC PK +D ++ +KL +H +
Sbjct: 427 F-YDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKA 485
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATD---RSFVEKLVQS 278
F I H+A K E + K D ++ L S
Sbjct: 486 FIIKHFADKVE-----YQCEGFLEKNKDTVYEEQIKVLKSS 521
Score = 90.6 bits (224), Expect = 2e-20
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 242 AIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHY 301
++ MG++ LLDEEC PK +D ++ +KL +H + F I H+
Sbjct: 432 PCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHF 491
Query: 302 AGKVDYSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAEIVGMAQQA 352
A KV+Y E +L KN D + E + +L+ S+ + +++D E A
Sbjct: 492 ADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSA 543
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Cow (Bos taurus) [TaxId: 9913]}
Length = 107
Score = 31.9 bits (72), Expect = 0.031
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 202 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI-VHYAGKPMGIMALLDEE 260
DE+ W +++R+ E L++ + F + +A V G+ +
Sbjct: 6 HDEKTWNVGSSNRNKAENLLRGK-RDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTAT 64
Query: 261 CWFPKATDRSF--VEKLVQSHSQH 282
+ + +++LV +
Sbjct: 65 GYGFAEPYNLYSSLKELVLHYQHT 88
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 28.1 bits (62), Expect = 0.59
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 202 LDEECWFPKATDRSFVEKLVQSHSQHAKF---KKTDFRGVADFAIVHYAGKPMGIMALLD 258
+D + R EKL+ + + GV V Y G
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCL-CVLYHGYIYTYRVSQT 59
Query: 259 EECWF-----PKATDRSF--VEKLVQSHSQHA 283
E + P R F ++ L+ + +
Sbjct: 60 ETGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91
>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 106
Score = 27.3 bits (60), Expect = 1.2
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 202 LDEECWFPKATDRSFVEKLVQSHS--------QHAKFKKTDFRGVADFAIVHYAGKPMGI 253
+ E W+ R E+L+ + + ++ K +
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61
Query: 254 MALLDEECWFPKATDRSF--VEKLVQSHSQHA 283
+ F + F +++LV +S+HA
Sbjct: 62 KIRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 93
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 108
Score = 27.0 bits (59), Expect = 1.5
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 202 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI-VHYAGKPMG-------- 252
L+ W+ K+ R EKL+ + F D R + + V
Sbjct: 3 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYH 62
Query: 253 IMALLDEECWFPKATDRSF--VEKLVQSHSQHA 283
I D + A F + L+Q H +
Sbjct: 63 IKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNG 95
Score = 24.7 bits (53), Expect = 9.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 257 LDEECWFPKATDRSFVEKLVQSHSQHAKF 285
L+ W+ K+ R EKL+ + F
Sbjct: 3 LETYEWYNKSISRDKAEKLLLDTGKEGAF 31
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.8 bits (56), Expect = 3.5
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 202 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI-VHYAGKPMGIMALLDE- 259
L + W+ + + ++ ++ + + I V + P + +
Sbjct: 12 LGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDG 71
Query: 260 -----ECWFPKATDRSF--VEKLVQSHSQHAK 284
K+ + F V L+ + Q K
Sbjct: 72 KFRLDSIICVKSKLKQFDSVVHLIDYYVQMCK 103
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 26.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 26 QERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPR 63
+ER DQ + D T+AQ +AK LG+ +T+ P
Sbjct: 514 RERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPP 551
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 360
Score = 25.8 bits (55), Expect = 9.0
Identities = 22/205 (10%), Positives = 45/205 (21%), Gaps = 10/205 (4%)
Query: 121 GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFID 180
G I FE ++ + +Y + + + E Y ++ D
Sbjct: 113 GNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAP-KPTMADELYNQDYPIHSVED 171
Query: 181 FGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240
+ + D + + D+R
Sbjct: 172 RHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHII 231
Query: 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVH 300
++ Q FKK + + +
Sbjct: 232 SFKDPNPMHIDATFNIIGPGIVLSNPDRPC---------HQIDLFKKAGWTIITPPTPII 282
Query: 301 YAGKVDYSAEKWLMKNMDPLNENVV 325
+ + KWL N+ L+E V
Sbjct: 283 PDDHPLWMSSKWLSMNVLMLDEKRV 307
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
(LmjF30.0810) {Leishmania major [TaxId: 5664]}
Length = 254
Score = 25.7 bits (55), Expect = 9.1
Identities = 9/118 (7%), Positives = 32/118 (27%), Gaps = 1/118 (0%)
Query: 54 EMTKAFLKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRS 113
E K L+ + + + + + +
Sbjct: 123 EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKH 182
Query: 114 LDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQR 171
+ + + + F ++ + + ++ ++LFN + + +E +Q
Sbjct: 183 CQQALTPNGYIFFKENCSTGDRFLVDKEDS-SLTRSDIHYKRLFNESGVRVVKEAFQE 239
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 105
Score = 24.6 bits (53), Expect = 9.2
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 201 LLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKPMGIMALLDEE 260
+ + + W+ + R+ E ++ + F +AI + + + +E
Sbjct: 5 IHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAIS-FRAEGKIKHCRVQQE 63
Query: 261 CWFPKATDRSF--VEKLVQSHSQHA 283
+ F + L+ + +H
Sbjct: 64 GQTVMLGNSEFDSLVDLISYYEKHP 88
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 25.5 bits (55), Expect = 9.2
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 107 VNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQ 166
V+R+ + LD + F+ + AG + ++ +++ + ++ +++ +
Sbjct: 29 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVI---ASQALSKSDQLIGINYDSIVWLKDS 85
Query: 167 EEYQREGIEWKFIDFGLDLQPTIDLIDKPMGI 198
+ F D L L+ DL++ P
Sbjct: 86 GTAPKSTF-DLFTDILLMLKSEDDLLNFPSVE 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.404
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,324,143
Number of extensions: 60553
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 26
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)