BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1785
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/462 (52%), Positives = 325/462 (70%), Gaps = 11/462 (2%)
Query: 171 SSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDP 230
S KV EW PEEL++ L+L + S ++++ + VI+YSVKTGHP F NQLFS +DP
Sbjct: 62 SQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDP 121
Query: 231 YGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYA 290
+ L G+ + ++LN S YTYE++PVF LMEE VL ++R +VG+ GDGIFCPGGS++N YA
Sbjct: 122 HALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYA 181
Query: 291 ISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRM 350
++ AR+ +P K +GL + P L L+TS++ HYSI+K AAF GLG+D+V ++K D RG+M
Sbjct: 182 VNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKM 241
Query: 351 LPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPH 408
+PE L +I AEGAVPF+VSATSGTTVLGAFDP+ AIAD+C + + V W
Sbjct: 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGS 301
Query: 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQS-VLTECHSAS 467
LL+ + + +R ADSV WNPHKLL A QCS L + S +L CH +
Sbjct: 302 VLLSQTHRHLLDGIQR-------ADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQ 354
Query: 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFT 527
ASYLFQ+DKFYD D+GDK +QCGR+ D LK W MWKA+G GLE ID++F A+Y
Sbjct: 355 ASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLV 414
Query: 528 DKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSM 587
++++ R GF+LV+ EPE N+ FW++PPSLRGK++ D++E L KVAP +KERM+K GSM
Sbjct: 415 EEMKKREGFELVM-EPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSM 473
Query: 588 MITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
MI YQP NFFR+V+ NSAL +DMD+ ++E+ERLG DL
Sbjct: 474 MIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 306/469 (65%), Gaps = 19/469 (4%)
Query: 171 SSKVNEWVNPEELEKKLELGFNAGPSSHAK-----LIDLMKTVIQYSVKTGHPYFVNQLF 225
S+KV ++ +P +L + +E GFN S H + L+D T ++Y V+TGHP F NQL
Sbjct: 46 STKVLDFHHPHQLLEGME-GFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLS 103
Query: 226 SSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF--QGGDGIFCPGG 283
+ +D GL G+WL N +++TYE++PVF LME+ L +MR IVG+ + GDGIF PGG
Sbjct: 104 TGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGG 163
Query: 284 SMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIK 343
+++N Y+I AR+ FP++KT+G+A+ P+LVL+TSE +HYSIKK A G G+DNV LIK
Sbjct: 164 AISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIK 223
Query: 344 TDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV 403
+ RG+++P +I +G VPF V+AT+GTTV GAFDPI IADIC +Y++ V
Sbjct: 224 CNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 283
Query: 404 --TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLT 461
W L++ + + R A+SVTWNPH ++ QCS L + + +L
Sbjct: 284 DAAWGGGLLMSRKHRHKLNGIER-------ANSVTWNPHXMMGVLLQCSAILVKEKGILQ 336
Query: 462 ECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFD 521
C+ ASYLFQ+DK YD YD+GDK IQCGR D+ KFW MWKAKGT G E I+K +
Sbjct: 337 GCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 396
Query: 522 NAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKER 580
A+Y KI++R F++V + EPE TN+ FWYIP SLRG D E LHKVAPKIK
Sbjct: 397 LAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKAL 456
Query: 581 MMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 457 MMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 79 SGVCSYESLPEQVRHERFFRDAFEV--LLRDGVFKATSRGNKVNEWVNPEELEKKLELGF 136
S + + + LP + E+ + EV +L + V K R KV ++ +P +L + +E GF
Sbjct: 7 SNLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGME-GF 65
Query: 137 NAGPSSHGK-----LIDLMKTVIQYSVKTGHPYFVNQL 169
N S H + L+D T ++Y V+TGHP F NQL
Sbjct: 66 NLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQL 102
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/488 (44%), Positives = 312/488 (63%), Gaps = 19/488 (3%)
Query: 146 LIDLMKTVIQYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLM 205
L D+M ++QY VK+ S+KV ++ P EL ++ P + +++
Sbjct: 24 LQDVMNILLQYVVKSFDR-------STKVIDFHYPNELLQEYNWELADQPQNLEEILMHC 76
Query: 206 KTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQ 265
+T ++Y++KTGHP + NQL + +D GL WL N +++TYE++PVF L+E L +
Sbjct: 77 QTTLKYAIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKK 136
Query: 266 MRTIVGFQGG--DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHY 323
MR I+G+ GG DGIF PGG+++N YA+ AR FP++K +G+A+ PRL+ +TSE +H+
Sbjct: 137 MREIIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHF 196
Query: 324 SIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGA 383
S+KK AA G+G+D+V LIK D RG+M+P L I +G VPF+VSAT+GTTV GA
Sbjct: 197 SLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGA 256
Query: 384 FDPIPAIADICAEYD--MADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHK 441
FDP+ A+ADIC +Y M W L++ + + R A+SVTWNPH
Sbjct: 257 FDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVER-------ANSVTWNPHX 309
Query: 442 LLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFW 501
++ P QCS L R + ++ C+ ASYLFQ+DK YD YD+GDK +QCGR DV K W
Sbjct: 310 MMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLW 369
Query: 502 FMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSLRGK 560
MW+AKGT G EAH+DK + A+Y + I++R G+++V D +P+ TN+ FWYIPPSLR
Sbjct: 370 LMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTL 429
Query: 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFID 620
ED + L KVAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D+ I+
Sbjct: 430 EDNEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIE 489
Query: 621 EIERLGHD 628
EIERLG D
Sbjct: 490 EIERLGQD 497
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 96 FFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQ 155
F +D +LL+ V K+ R KV ++ P EL ++ P + +++ +T ++
Sbjct: 23 FLQDVMNILLQ-YVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILMHCQTTLK 81
Query: 156 YSVKTGHPYFVNQL 169
Y++KTGHP + NQL
Sbjct: 82 YAIKTGHPRYFNQL 95
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/494 (44%), Positives = 296/494 (59%), Gaps = 69/494 (13%)
Query: 171 SSKVNEWVNPEELEKKLELGFNAGPSSHAK-----LIDLMKTVIQYSVKTGHPYFVNQLF 225
S+KV ++ +P +L + +E GFN S H + L+D T ++Y V+TGHP F NQL
Sbjct: 43 STKVLDFHHPHQLLEGME-GFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLS 100
Query: 226 SSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF--QGGDGIFCPGG 283
+ +D GL G+WL N +++TYE++PVF LME+ L +MR IVG+ + GDGIF PGG
Sbjct: 101 TGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGG 160
Query: 284 SMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIK 343
+++N Y+I AR+ FP++KT+G+A+ P+LVL+TSE +HYSIKK A G G+DNV LIK
Sbjct: 161 AISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIK 220
Query: 344 TDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDM---- 399
+ RG+++P +I +G VPF V+AT+GTTV GAFDPI IADIC +Y++
Sbjct: 221 CNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 280
Query: 400 -----------------------ADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVT 436
A+SVTWNPH ++ QCS L +
Sbjct: 281 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKE------------ 328
Query: 437 WNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 496
+ +L C+ A YLFQ DK YD YD+GDK IQCGR D
Sbjct: 329 --------------------KGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368
Query: 497 VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPP 555
+ KFW MWKAKGT G E I+K + A+Y KI++R F++V + EPE TN+ FWYIP
Sbjct: 369 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ 428
Query: 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDM 615
SLRG D E LHKVAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+
Sbjct: 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDI 488
Query: 616 DYFIDEIERLGHDL 629
D+ I+EIERLG DL
Sbjct: 489 DFLIEEIERLGQDL 502
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 79 SGVCSYESLPEQVRHERFFRDAFEV--LLRDGVFKATSRGNKVNEWVNPEELEKKLELGF 136
S + + + LP + E+ + EV +L + V K R KV ++ +P +L + +E GF
Sbjct: 4 SNLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGME-GF 62
Query: 137 NAGPSSHGK-----LIDLMKTVIQYSVKTGHPYFVNQL 169
N S H + L+D T ++Y V+TGHP F NQL
Sbjct: 63 NLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQL 99
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 33/325 (10%)
Query: 233 LVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF-----------QGGDGIFCP 281
L+G LADA+N +T+ SP + +E +V+ + ++G QGG G+
Sbjct: 94 LLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGG-GVLQS 152
Query: 282 GGSMANGYAISCARHHAFPQIKTQG-----LASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336
S + A+ AR + ++KT + RLV Y S+ AH S++K +
Sbjct: 153 TVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV-- 210
Query: 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396
+ + D + E+L+ I+ G VP V AT GTT + AFD + + ICA
Sbjct: 211 -KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAR 269
Query: 397 YDMADSVTWNPHKLLTAPQQCSVFLTR--RNYVIEV-VADSVTWNPHKLLTAPQQCSVFL 453
+ + A + FL R ++ + ADS T+NP K + C+ F
Sbjct: 270 EGLWLHID--------AAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321
Query: 454 TRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLE 513
+ + L + S + YL + T D I R+ +K WF+ ++ G L+
Sbjct: 322 VKDKYKLQQTFSVNPIYLRHANSGVAT--DFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQ 379
Query: 514 AHIDKSFDNAKYFTDKIRHRPGFKL 538
AH+ + AKYF +R+ P F++
Sbjct: 380 AHVRHGTEMAKYFESLVRNDPSFEI 404
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 159/368 (43%), Gaps = 35/368 (9%)
Query: 195 PSSHAKLIDLMKTVIQYSVKTGH-PYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSP 253
P + +I+ ++ +I V H PYF ++ ++ L A+ +++ SP
Sbjct: 50 PDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASP 109
Query: 254 VFSLMEEHVLAQMRTIVGFQG---------GDGIFCPGGSMANGYAISCARHHAFPQIK- 303
+ +E ++ + ++ G G+ S A A+ AR +++
Sbjct: 110 ACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQA 169
Query: 304 -----TQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGE 358
TQ A +LV Y+S+ AH S+++ +G + I +D M +L+
Sbjct: 170 ASPELTQA-AIMEKLVAYSSDQAHSSVERAGL---IGGVKLKAIPSDGNFAMRASALQEA 225
Query: 359 IQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCS 418
++R A G +PF + AT GTT +FD + + IC + D+ V A S
Sbjct: 226 LERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVD--------AAYAGS 277
Query: 419 VFLTRR-NYVIEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475
F+ +++ V ADS +NPHK L CS + ++ LT +YL K
Sbjct: 278 AFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYL--KH 335
Query: 476 KFYDTKYDSGDKHIQC--GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR 533
D+ + +H Q GR+ LK WF+++ G GL+A+I K + F +R
Sbjct: 336 SHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQD 395
Query: 534 PGFKLVLD 541
P F++ ++
Sbjct: 396 PRFEICVE 403
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 158/368 (42%), Gaps = 35/368 (9%)
Query: 195 PSSHAKLIDLMKTVIQYSVKTGH-PYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSP 253
P + +I+ ++ +I V H PYF ++ ++ L A+ +++ SP
Sbjct: 50 PDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASP 109
Query: 254 VFSLMEEHVLAQMRTIVGFQG---------GDGIFCPGGSMANGYAISCARHHAFPQIK- 303
+ +E ++ + ++ G G+ S A A+ AR +++
Sbjct: 110 ACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQA 169
Query: 304 -----TQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGE 358
TQ A +LV Y+S+ AH S+++ +G + I +D M +L+
Sbjct: 170 ASPELTQA-AIMEKLVAYSSDQAHSSVERAGL---IGGVKLKAIPSDGNFAMRASALQEA 225
Query: 359 IQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCS 418
++R A G +PF + AT GTT +FD + + IC + D+ V A S
Sbjct: 226 LERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVD--------AAYAGS 277
Query: 419 VFLTRR-NYVIEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475
F+ +++ V ADS +NPH L CS + ++ LT +YL K
Sbjct: 278 AFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYL--KH 335
Query: 476 KFYDTKYDSGDKHIQC--GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR 533
D+ + +H Q GR+ LK WF+++ G GL+A+I K + F +R
Sbjct: 336 SHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQD 395
Query: 534 PGFKLVLD 541
P F++ ++
Sbjct: 396 PRFEICVE 403
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 21/261 (8%)
Query: 304 TQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTL 363
TQG A +LV Y S+ AH S+++ +G + I +D + M +L+ ++R
Sbjct: 175 TQG-AVLEKLVAYASDQAHSSVERAGL---IGGVKLKAIPSDGKFAMRASALQEALERDK 230
Query: 364 AEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLTR 423
A G +PF V AT GTT +FD + + IC E D+ V A S F+
Sbjct: 231 AAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD--------AAYAGSAFICP 282
Query: 424 R-NYVIEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480
+++ V ADS +NPHK L CS + ++ LT YL +
Sbjct: 283 EFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGL 342
Query: 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540
D + GR+ LK WF+++ G GL+A+I K + F + P F++
Sbjct: 343 ITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV-- 400
Query: 541 DEPECTNISFWYIPPSLRGKE 561
C ++ + L+G +
Sbjct: 401 ----CAEVTLGLVCFRLKGSD 417
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 178/442 (40%), Gaps = 46/442 (10%)
Query: 203 DLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHV 262
D+ + V + ++ T HP + L + + + ALN S +++ + + +E+ V
Sbjct: 86 DVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSATYVEQKV 145
Query: 263 LAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARH--------HAFPQIKTQGLASCPRL 313
+ + + DGIF GG+ +N + AR H+ ++ A R+
Sbjct: 146 VNWLCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRI 205
Query: 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVS 373
V S+ +H++++K A++ GLG V + +A G L I + AEG +PF +
Sbjct: 206 V--CSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIV 263
Query: 374 ATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVV-- 431
T+GTT GA D + IAD ++D W + ++ L+ ++ V
Sbjct: 264 GTAGTTDHGAIDDLDFIADXAVKHDX-----WXH---VDGAYGGALILSSHKSRLKGVER 315
Query: 432 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS----GDK 487
A S++ + HKL C L +S + +L + + ++D DK
Sbjct: 316 AHSISVDFHKLFYQTISCGALLVNDKS--------NFKFLLHHADYLNREHDELPNLVDK 367
Query: 488 HIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN 547
I ++ D LK + + G L D D IR F+L L EP +
Sbjct: 368 SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFEL-LAEPSLST 426
Query: 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQN 607
+ F R + AD +EL ++ + G + + + I + + N
Sbjct: 427 VLF-------RATHETADLDEL----NKALRLEALTRG-IAVLGETIVDGKTALKFTILN 474
Query: 608 SALDHSDMDYFIDEIERLGHDL 629
L SD + + +I L +L
Sbjct: 475 PCLTTSDFESLLSKINXLAVEL 496
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 40/317 (12%)
Query: 312 RLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFM 371
+LV Y S+ AH S+++ G+ +V RM +L I++ +AEG +PF
Sbjct: 182 KLVGYCSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFY 237
Query: 372 VSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKL---LTAPQQCSVFLT-RRNYV 427
T GTT AFD + D C N H L + A S F+ ++
Sbjct: 238 AVVTLGTTNSCAFDYL----DECGPVG-------NKHNLWIHVDAAYAGSAFICPEYRHL 286
Query: 428 IEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485
++ + ADS +NPH + CS + S + + YL K + D
Sbjct: 287 MKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPDYR 344
Query: 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC 545
I GR+ LK WF+ + G + L+AHI + + AK F D F+L
Sbjct: 345 HWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA------ 398
Query: 546 TNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVL 605
I+ + L+G ++ NE L K R+ G + + I + F R+ +
Sbjct: 399 AEINMGLVCFRLKGSNER---NEALLK-------RINGRGHIHLVPAKIKDV-YFLRMAI 447
Query: 606 QNSALDHSDMDYFIDEI 622
+ DM+Y E+
Sbjct: 448 CSRFTQSEDMEYSWKEV 464
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 81 VCSYESLPEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGP 140
+C+ L E+V H+R FR++ + V A + +K+N V +L+ + L P
Sbjct: 87 LCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLFLTDSP 144
Query: 141 SSHGKLIDL-----MKTVIQYSVKTGHPYFVNQ-----LFSSKVNEW 177
S KLID K K G PY+V+ L+ + +EW
Sbjct: 145 DSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEW 191
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 81 VCSYESLPEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGP 140
+C+ L E+V H+R FR++ + V A + +K+N V +L+ + L P
Sbjct: 104 LCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLFLTDSP 161
Query: 141 SSHGKLIDL-----MKTVIQYSVKTGHPYFVNQ-----LFSSKVNEW 177
S KLID K K G PY+V+ L+ + +EW
Sbjct: 162 DSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEW 208
>pdb|2Q1Z|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Q1Z|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 184
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSM 587
++R D+A F EL APK+K +MKSGS+
Sbjct: 19 AIRDHRDEAAFAELFQHFAPKVKGFLMKSGSV 50
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 256 SLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASC--PRL 313
L+EE +A + +++ + G GG+ AN A+ C + + + + + +GL+ P++
Sbjct: 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLXALRCIK-NIWREKRRKGLSKNEHPKI 126
Query: 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYL-IKTDARGRMLPESLRGEIQRTLAEGAVPFMV 372
++ + AH+S +K E + +Y IK D + + ++ ++ +G +
Sbjct: 127 IVPIT--AHFSFEK--GREXXDLEYIYAPIKEDY--TIDEKFVKDAVEDYDVDGII---- 176
Query: 373 SATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLTRRNYVIE--V 430
+GTT LG D I ++ I E ++ V L+ NY + +
Sbjct: 177 -GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL 235
Query: 431 VADSVTWNPHKLLTAP 446
DS+T +PHK P
Sbjct: 236 GVDSITIDPHKXGHCP 251
>pdb|2Z2S|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|G Chain G, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 184
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSM 587
++R D+A F EL APK+K + KSGS+
Sbjct: 19 AIRDHRDEAAFAELFQHFAPKVKGFLXKSGSV 50
>pdb|4AE0|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197
pdb|4AE1|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
pdb|4AE1|B Chain B, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
Length = 535
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 29 EYNSSDDETLEAGSKFDHFR----ASGAGYRFTSGGLAGELQVPAREGKPAGKTSGVCSY 84
E+ S+D++ AG D+ +G + T GL L + + K G+
Sbjct: 52 EFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLT 111
Query: 85 ESLPEQVRHERFFR----DAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGF 136
E L EQV E F + A V+L + +S +N W + L +LE+ F
Sbjct: 112 EPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINF 167
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 532 HRPGFKLVLDEPE--CTNISFWYIPPSLRGKEDQADFNELLHKV 573
+ GFKL +DE E + + +P S + D DFNEL+H +
Sbjct: 116 EKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLI 159
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 532 HRPGFKLVLDEPE--CTNISFWYIPPSLRGKEDQADFNELLHKV 573
+ GFKL +DE E + + +P S + D DFNEL+H +
Sbjct: 115 EKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLI 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,350,330
Number of Sequences: 62578
Number of extensions: 896690
Number of successful extensions: 1782
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 38
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)