Query psy1785
Match_columns 629
No_of_seqs 377 out of 2932
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:38:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vp6_A Glutamate decarboxylase 100.0 2.2E-66 7.4E-71 579.0 53.2 491 77-629 8-505 (511)
2 2okj_A Glutamate decarboxylase 100.0 5.6E-61 1.9E-65 534.7 52.1 491 77-629 5-502 (504)
3 2jis_A Cysteine sulfinic acid 100.0 2E-60 6.9E-65 531.7 53.2 486 78-629 23-515 (515)
4 4e1o_A HDC, histidine decarbox 100.0 6.9E-61 2.4E-65 530.9 45.4 452 88-628 6-477 (481)
5 3k40_A Aromatic-L-amino-acid d 100.0 4.2E-61 1.4E-65 531.8 43.2 450 89-628 2-470 (475)
6 1js3_A DDC;, DOPA decarboxylas 100.0 9.4E-56 3.2E-60 490.2 44.4 453 89-628 2-473 (486)
7 2qma_A Diaminobutyrate-pyruvat 100.0 2.4E-52 8.2E-57 464.3 49.2 467 77-629 18-496 (497)
8 2dgk_A GAD-beta, GADB, glutama 100.0 1.9E-40 6.7E-45 364.0 39.7 400 180-627 7-432 (452)
9 3hbx_A GAD 1, glutamate decarb 100.0 6.5E-38 2.2E-42 348.5 39.0 401 180-627 20-442 (502)
10 3mc6_A Sphingosine-1-phosphate 100.0 1.9E-33 6.6E-38 311.8 29.9 388 189-627 36-435 (497)
11 3mad_A Sphingosine-1-phosphate 100.0 2.2E-31 7.6E-36 296.7 33.1 389 189-627 69-467 (514)
12 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 2E-32 6.8E-37 295.6 21.7 374 189-627 21-441 (450)
13 3f9t_A TDC, L-tyrosine decarbo 100.0 2E-28 6.9E-33 261.2 39.4 389 190-627 4-396 (397)
14 2z67_A O-phosphoseryl-tRNA(SEC 100.0 5E-29 1.7E-33 273.7 25.2 365 189-625 56-454 (456)
15 1wyu_A Glycine dehydrogenase ( 99.9 1.2E-25 4E-30 245.4 26.6 370 180-626 31-437 (438)
16 1wyu_B Glycine dehydrogenase s 99.9 7E-25 2.4E-29 241.9 31.6 394 180-627 31-439 (474)
17 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 2.7E-23 9.2E-28 221.5 20.6 375 189-627 39-459 (501)
18 3nnk_A Ureidoglycine-glyoxylat 99.9 4.1E-21 1.4E-25 206.3 28.8 322 252-628 41-389 (411)
19 4hvk_A Probable cysteine desul 99.9 1E-20 3.5E-25 200.4 28.8 307 252-628 38-372 (382)
20 3e9k_A Kynureninase; kynurenin 99.9 6.4E-21 2.2E-25 209.3 28.0 320 257-628 111-460 (465)
21 3isl_A Purine catabolism prote 99.9 1.6E-20 5.6E-25 201.9 27.8 322 252-628 39-389 (416)
22 2z9v_A Aspartate aminotransfer 99.9 1.2E-19 4.1E-24 193.7 32.1 321 252-628 37-370 (392)
23 2dr1_A PH1308 protein, 386AA l 99.9 5.5E-20 1.9E-24 195.6 27.9 320 252-628 48-378 (386)
24 4eb5_A Probable cysteine desul 99.9 8E-20 2.7E-24 194.0 28.7 307 252-628 38-372 (382)
25 3zrp_A Serine-pyruvate aminotr 99.9 1.3E-20 4.5E-25 200.1 22.4 317 252-627 30-361 (384)
26 3lvm_A Cysteine desulfurase; s 99.9 1.6E-19 5.3E-24 195.0 31.1 306 253-628 64-398 (423)
27 3ffr_A Phosphoserine aminotran 99.9 2.6E-20 8.8E-25 196.2 23.7 310 251-626 37-361 (362)
28 1t3i_A Probable cysteine desul 99.9 3.3E-19 1.1E-23 191.7 32.3 320 256-628 71-412 (420)
29 3kgw_A Alanine-glyoxylate amin 99.9 1.5E-19 5E-24 192.6 28.4 321 252-628 51-387 (393)
30 2yrr_A Aminotransferase, class 99.9 9E-20 3.1E-24 191.1 25.5 314 252-628 28-352 (353)
31 1m32_A 2-aminoethylphosphonate 99.8 1.3E-19 4.4E-24 190.9 25.9 317 257-629 37-365 (366)
32 1kmj_A Selenocysteine lyase; p 99.8 4.8E-19 1.6E-23 189.5 30.0 321 255-628 65-404 (406)
33 1iug_A Putative aspartate amin 99.8 2E-19 6.9E-24 188.7 25.7 311 252-628 29-347 (352)
34 2huf_A Alanine glyoxylate amin 99.8 4.6E-19 1.6E-23 189.3 28.4 321 252-628 47-382 (393)
35 1vjo_A Alanine--glyoxylate ami 99.8 3.1E-19 1.1E-23 190.7 26.8 317 252-626 62-392 (393)
36 1eg5_A Aminotransferase; PLP-d 99.8 1.8E-18 6.1E-23 183.5 31.5 306 254-628 41-375 (384)
37 2bkw_A Alanine-glyoxylate amin 99.8 4.1E-19 1.4E-23 188.8 26.0 326 252-629 33-384 (385)
38 1elu_A L-cysteine/L-cystine C- 99.8 3.5E-19 1.2E-23 189.6 25.5 314 256-626 58-389 (390)
39 3cai_A Possible aminotransfera 99.8 8.8E-19 3E-23 188.0 26.8 306 254-625 66-405 (406)
40 3f0h_A Aminotransferase; RER07 99.8 1E-18 3.4E-23 185.5 25.3 315 252-627 47-372 (376)
41 3e77_A Phosphoserine aminotran 99.8 8.5E-20 2.9E-24 194.5 16.8 310 251-627 52-373 (377)
42 2ch1_A 3-hydroxykynurenine tra 99.8 1.2E-18 4.1E-23 186.2 25.2 320 252-627 46-381 (396)
43 1v72_A Aldolase; PLP-dependent 99.8 4.4E-19 1.5E-23 186.5 20.3 299 257-628 43-352 (356)
44 3ke3_A Putative serine-pyruvat 99.8 1.7E-18 5.8E-23 184.9 24.6 321 251-628 29-375 (379)
45 1svv_A Threonine aldolase; str 99.8 2.8E-18 9.7E-23 180.3 25.6 303 254-628 46-357 (359)
46 3vax_A Putative uncharacterize 99.8 6.4E-18 2.2E-22 180.8 28.7 316 253-628 59-399 (400)
47 2e7j_A SEP-tRNA:Cys-tRNA synth 99.8 3.7E-19 1.3E-23 188.3 18.3 298 258-629 54-370 (371)
48 3m5u_A Phosphoserine aminotran 99.8 1E-18 3.5E-23 185.4 19.5 302 251-628 44-359 (361)
49 1qz9_A Kynureninase; kynurenin 99.8 2.7E-17 9.1E-22 177.0 28.9 309 257-627 71-400 (416)
50 3a9z_A Selenocysteine lyase; P 99.8 2.2E-17 7.6E-22 178.8 24.8 323 252-628 56-427 (432)
51 2fnu_A Aminotransferase; prote 99.8 1.7E-17 5.8E-22 175.7 23.2 307 260-628 35-371 (375)
52 2vyc_A Biodegradative arginine 99.8 8.7E-18 3E-22 194.5 22.4 309 260-627 208-603 (755)
53 2w8t_A SPT, serine palmitoyltr 99.8 1.3E-16 4.6E-21 173.0 29.7 300 257-628 109-414 (427)
54 3dzz_A Putative pyridoxal 5'-p 99.8 8.7E-17 3E-21 171.2 27.0 309 255-629 64-389 (391)
55 3qm2_A Phosphoserine aminotran 99.8 1.6E-18 5.6E-23 185.5 13.0 304 252-628 67-384 (386)
56 3tqx_A 2-amino-3-ketobutyrate 99.8 6.5E-17 2.2E-21 172.8 25.5 301 258-628 89-395 (399)
57 1rv3_A Serine hydroxymethyltra 99.7 2.9E-17 9.9E-22 181.3 20.0 320 249-627 82-429 (483)
58 3uwc_A Nucleotide-sugar aminot 99.7 2.4E-17 8.3E-22 174.8 18.4 300 260-628 41-370 (374)
59 1j32_A Aspartate aminotransfer 99.7 1.1E-16 3.8E-21 170.6 23.6 310 249-628 63-386 (388)
60 2c81_A Glutamine-2-deoxy-scyll 99.7 1.9E-16 6.6E-21 171.0 24.4 313 260-628 45-413 (418)
61 2x3l_A ORN/Lys/Arg decarboxyla 99.7 2.1E-17 7.2E-22 180.6 16.8 284 258-628 58-352 (446)
62 1c4k_A Protein (ornithine deca 99.7 7.6E-17 2.6E-21 185.2 22.0 321 259-627 175-564 (730)
63 3frk_A QDTB; aminotransferase, 99.7 1.9E-17 6.7E-22 175.8 14.8 298 260-627 39-366 (373)
64 3nra_A Aspartate aminotransfer 99.7 2.6E-16 8.8E-21 168.7 23.5 310 249-628 74-404 (407)
65 1b9h_A AHBA synthase, protein 99.7 1.3E-15 4.6E-20 162.4 28.8 308 260-628 41-387 (388)
66 3dr4_A Putative perosamine syn 99.7 2E-16 6.9E-21 169.1 21.0 303 260-626 59-390 (391)
67 2cb1_A O-acetyl homoserine sul 99.7 1.1E-15 3.6E-20 165.2 26.5 295 259-624 58-411 (412)
68 2a7v_A Serine hydroxymethyltra 99.7 4.5E-16 1.5E-20 171.4 23.5 308 252-626 95-438 (490)
69 1fc4_A 2-amino-3-ketobutyrate 99.7 9.2E-16 3.1E-20 164.3 25.2 300 258-628 91-396 (401)
70 3euc_A Histidinol-phosphate am 99.7 9.6E-16 3.3E-20 162.1 24.5 287 260-627 70-366 (367)
71 2fyf_A PSAT, phosphoserine ami 99.7 4.2E-16 1.4E-20 167.2 21.9 311 251-629 72-398 (398)
72 2oga_A Transaminase; PLP-depen 99.7 1.4E-15 4.6E-20 163.4 25.2 301 260-629 66-396 (399)
73 4dq6_A Putative pyridoxal phos 99.7 1.7E-15 6E-20 161.1 25.3 305 255-626 69-390 (391)
74 3l8a_A METC, putative aminotra 99.7 1.5E-15 5.1E-20 164.2 25.1 308 256-627 99-420 (421)
75 2vi8_A Serine hydroxymethyltra 99.7 7.5E-16 2.6E-20 165.0 22.3 308 252-628 64-386 (405)
76 3ffh_A Histidinol-phosphate am 99.7 4.2E-15 1.5E-19 156.9 27.7 287 260-625 70-362 (363)
77 2zc0_A Alanine glyoxylate tran 99.7 1.6E-15 5.6E-20 162.7 24.8 318 249-628 71-403 (407)
78 1o69_A Aminotransferase; struc 99.7 4.7E-15 1.6E-19 158.9 27.9 317 260-627 35-385 (394)
79 1xi9_A Putative transaminase; 99.7 1.7E-15 5.7E-20 162.9 24.2 310 249-628 74-402 (406)
80 1gd9_A Aspartate aminotransfer 99.7 2.1E-15 7.3E-20 160.8 24.4 308 249-628 59-385 (389)
81 3a2b_A Serine palmitoyltransfe 99.7 2.1E-15 7.1E-20 161.5 24.2 299 257-628 88-391 (398)
82 1v2d_A Glutamine aminotransfer 99.7 8.6E-16 2.9E-20 163.5 20.9 293 260-628 64-370 (381)
83 1o4s_A Aspartate aminotransfer 99.7 3E-15 1E-19 160.1 24.3 316 236-628 61-388 (389)
84 3n0l_A Serine hydroxymethyltra 99.7 6.2E-15 2.1E-19 158.4 26.1 308 252-627 66-387 (417)
85 3ly1_A Putative histidinol-pho 99.7 3.7E-15 1.3E-19 156.6 23.8 292 259-627 53-350 (354)
86 2gb3_A Aspartate aminotransfer 99.7 1.7E-15 5.8E-20 163.1 21.3 312 240-627 66-400 (409)
87 1mdo_A ARNB aminotransferase; 99.7 2.2E-15 7.4E-20 160.8 22.0 304 260-627 42-384 (393)
88 2dkj_A Serine hydroxymethyltra 99.7 7.3E-16 2.5E-20 165.1 18.0 305 253-627 65-386 (407)
89 1gc0_A Methionine gamma-lyase; 99.7 4.2E-15 1.4E-19 159.7 23.9 282 260-626 68-398 (398)
90 3ftb_A Histidinol-phosphate am 99.7 2.4E-14 8.3E-19 150.7 28.9 289 260-629 64-361 (361)
91 2c0r_A PSAT, phosphoserine ami 99.7 5.3E-15 1.8E-19 156.2 23.6 300 252-627 44-359 (362)
92 3kax_A Aminotransferase, class 99.7 9.9E-15 3.4E-19 154.8 25.8 304 255-626 61-382 (383)
93 1u08_A Hypothetical aminotrans 99.7 4.7E-15 1.6E-19 158.0 23.3 308 249-624 63-385 (386)
94 3b8x_A WBDK, pyridoxamine 5-ph 99.7 2.4E-14 8.3E-19 152.9 28.5 312 260-622 37-389 (390)
95 3piu_A 1-aminocyclopropane-1-c 99.7 8.4E-15 2.9E-19 158.9 25.0 322 253-628 86-431 (435)
96 1c7n_A Cystalysin; transferase 99.7 7E-15 2.4E-19 157.3 23.7 306 255-627 68-391 (399)
97 1bs0_A Protein (8-amino-7-oxon 99.7 1.8E-14 6.2E-19 153.3 26.3 296 258-626 85-384 (384)
98 2bwn_A 5-aminolevulinate synth 99.7 4E-14 1.4E-18 151.6 28.7 300 260-629 94-400 (401)
99 2o0r_A RV0858C (N-succinyldiam 99.7 8.3E-15 2.8E-19 157.7 23.3 311 249-627 58-394 (411)
100 3get_A Histidinol-phosphate am 99.7 7.9E-15 2.7E-19 154.9 22.6 286 261-626 69-364 (365)
101 1iay_A ACC synthase 2, 1-amino 99.6 2.2E-14 7.4E-19 155.3 26.4 316 255-628 85-426 (428)
102 3kki_A CAI-1 autoinducer synth 99.6 2.2E-14 7.5E-19 154.2 26.1 292 260-627 107-402 (409)
103 1vp4_A Aminotransferase, putat 99.6 1.5E-14 5.3E-19 156.4 25.0 314 249-627 81-416 (425)
104 1yiz_A Kynurenine aminotransfe 99.6 1.8E-14 6.2E-19 155.8 25.0 320 249-628 73-428 (429)
105 1w23_A Phosphoserine aminotran 99.6 2.4E-15 8.3E-20 158.3 17.5 305 252-628 43-359 (360)
106 2rfv_A Methionine gamma-lyase; 99.6 5.7E-14 1.9E-18 150.7 27.5 286 257-625 64-396 (398)
107 3h14_A Aminotransferase, class 99.6 2.1E-14 7.3E-19 153.2 24.0 304 249-628 64-381 (391)
108 3nyt_A Aminotransferase WBPE; 99.6 1.8E-15 6.1E-20 160.5 15.2 294 260-625 38-360 (367)
109 1d2f_A MALY protein; aminotran 99.6 5.3E-14 1.8E-18 150.1 26.6 307 255-628 65-388 (390)
110 3qhx_A Cystathionine gamma-syn 99.6 3.4E-14 1.2E-18 152.5 25.1 214 260-540 69-290 (392)
111 3dyd_A Tyrosine aminotransfera 99.6 1.8E-14 6.1E-19 156.2 23.2 304 260-628 99-423 (427)
112 1cs1_A CGS, protein (cystathio 99.6 7.3E-14 2.5E-18 149.1 27.6 282 260-627 55-385 (386)
113 2zyj_A Alpha-aminodipate amino 99.6 2.5E-14 8.6E-19 153.1 23.9 298 260-627 77-391 (397)
114 3g0t_A Putative aminotransfera 99.6 4.2E-14 1.4E-18 153.1 25.8 317 253-628 82-436 (437)
115 3aow_A Putative uncharacterize 99.6 1E-13 3.6E-18 151.3 28.8 316 249-627 114-443 (448)
116 3fdb_A Beta C-S lyase, putativ 99.6 8.5E-14 2.9E-18 147.4 26.7 301 256-628 61-375 (377)
117 3gbx_A Serine hydroxymethyltra 99.6 1.1E-14 3.8E-19 156.4 19.4 303 256-627 75-394 (420)
118 3cq5_A Histidinol-phosphate am 99.6 2.8E-13 9.7E-18 143.5 29.9 288 256-627 72-366 (369)
119 2z61_A Probable aspartate amin 99.6 4.5E-14 1.5E-18 149.5 23.6 297 249-627 62-369 (370)
120 1lc5_A COBD, L-threonine-O-3-p 99.6 1.2E-13 3.9E-18 146.1 26.5 290 260-628 62-359 (364)
121 2po3_A 4-dehydrase; external a 99.6 9.6E-14 3.3E-18 150.1 26.3 298 260-627 55-384 (424)
122 1bw0_A TAT, protein (tyrosine 99.6 3.4E-14 1.2E-18 152.9 22.2 315 254-627 76-411 (416)
123 1jg8_A L-ALLO-threonine aldola 99.6 2.9E-15 9.8E-20 157.1 12.7 290 261-628 42-345 (347)
124 1qgn_A Protein (cystathionine 99.6 1.2E-13 4.3E-18 150.4 26.0 226 260-553 117-367 (445)
125 1fg7_A Histidinol phosphate am 99.6 2.2E-13 7.5E-18 143.9 26.9 285 260-625 61-354 (356)
126 1e5e_A MGL, methionine gamma-l 99.6 1.7E-13 5.8E-18 147.6 26.1 212 260-537 65-285 (404)
127 3op7_A Aminotransferase class 99.6 3.6E-14 1.2E-18 150.4 20.4 293 262-628 68-370 (375)
128 3ecd_A Serine hydroxymethyltra 99.6 1.3E-13 4.3E-18 148.4 24.7 303 257-627 78-395 (425)
129 3acz_A Methionine gamma-lyase; 99.6 1.2E-13 4.1E-18 148.0 24.1 213 260-539 62-282 (389)
130 3p1t_A Putative histidinol-pho 99.6 3E-13 1E-17 140.8 26.5 279 260-628 54-336 (337)
131 2dou_A Probable N-succinyldiam 99.6 3.7E-13 1.3E-17 142.7 27.5 302 253-626 63-375 (376)
132 1vef_A Acetylornithine/acetyl- 99.6 1.4E-13 4.8E-18 147.1 24.2 290 258-626 88-394 (395)
133 3ele_A Amino transferase; RER0 99.6 2.6E-13 9E-18 145.0 25.4 303 249-628 72-395 (398)
134 3ri6_A O-acetylhomoserine sulf 99.6 1.1E-13 3.9E-18 150.1 22.6 229 252-540 81-326 (430)
135 1pff_A Methionine gamma-lyase; 99.6 1.3E-13 4.4E-18 143.7 21.8 279 261-625 2-330 (331)
136 2o1b_A Aminotransferase, class 99.6 2.5E-13 8.5E-18 146.0 24.6 305 253-628 85-402 (404)
137 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.6 2.1E-13 7.1E-18 148.2 23.5 317 260-627 65-434 (437)
138 3ju7_A Putative PLP-dependent 99.6 1.6E-13 5.4E-18 146.5 21.7 307 252-626 35-372 (377)
139 2x5d_A Probable aminotransfera 99.6 4.7E-13 1.6E-17 144.0 25.2 309 252-628 74-397 (412)
140 1ax4_A Tryptophanase; tryptoph 99.6 4.2E-13 1.4E-17 146.7 25.2 320 260-627 79-439 (467)
141 3hdo_A Histidinol-phosphate am 99.6 3.5E-13 1.2E-17 142.1 23.7 283 260-627 68-353 (360)
142 3tcm_A Alanine aminotransferas 99.6 9.9E-13 3.4E-17 145.6 28.1 336 246-627 127-492 (500)
143 2ctz_A O-acetyl-L-homoserine s 99.5 1.4E-12 4.8E-17 141.2 27.9 235 260-540 61-315 (421)
144 1b5p_A Protein (aspartate amin 99.5 5.7E-13 2E-17 142.0 24.4 301 253-627 68-383 (385)
145 3lws_A Aromatic amino acid bet 99.5 2E-13 6.9E-18 143.6 20.5 290 260-625 50-355 (357)
146 3pj0_A LMO0305 protein; struct 99.5 1.1E-13 3.9E-18 145.5 18.1 292 260-624 51-357 (359)
147 3fvs_A Kynurenine--oxoglutarat 99.5 1.2E-12 4.3E-17 140.8 26.1 322 249-629 63-422 (422)
148 3ezs_A Aminotransferase ASPB; 99.5 6.3E-13 2.2E-17 140.7 23.4 299 253-628 59-374 (376)
149 3h7f_A Serine hydroxymethyltra 99.5 3.1E-13 1.1E-17 147.5 21.5 305 253-627 87-412 (447)
150 2fq6_A Cystathionine beta-lyas 99.5 1.1E-12 3.9E-17 141.7 25.7 289 251-625 80-414 (415)
151 3cog_A Cystathionine gamma-lya 99.5 2.3E-13 7.9E-18 146.6 19.7 281 260-627 70-400 (403)
152 3e2y_A Kynurenine-oxoglutarate 99.5 1.1E-12 3.7E-17 140.6 23.4 312 254-625 62-409 (410)
153 2eh6_A Acoat, acetylornithine 99.5 1.9E-12 6.6E-17 136.9 24.6 287 260-625 73-374 (375)
154 3n75_A LDC, lysine decarboxyla 99.5 2.8E-13 9.7E-18 154.6 19.3 305 260-627 198-558 (715)
155 2ez2_A Beta-tyrosinase, tyrosi 99.5 1.4E-12 4.7E-17 142.2 23.6 317 249-627 71-429 (456)
156 3ruy_A Ornithine aminotransfer 99.5 5.3E-12 1.8E-16 134.6 27.5 292 260-626 81-391 (392)
157 2ord_A Acoat, acetylornithine 99.5 1.7E-12 5.7E-17 138.9 23.5 296 258-629 83-397 (397)
158 2r2n_A Kynurenine/alpha-aminoa 99.5 6.6E-12 2.2E-16 135.8 27.8 312 256-628 81-423 (425)
159 3ndn_A O-succinylhomoserine su 99.5 4.1E-12 1.4E-16 137.3 25.4 214 260-540 84-305 (414)
160 3b46_A Aminotransferase BNA3; 99.5 4.7E-13 1.6E-17 145.9 18.2 338 234-625 75-443 (447)
161 1n8p_A Cystathionine gamma-lya 99.5 1.5E-12 5.3E-17 139.6 21.6 282 260-626 58-392 (393)
162 1sff_A 4-aminobutyrate aminotr 99.5 5.3E-12 1.8E-16 136.0 25.2 311 259-628 86-423 (426)
163 3jtx_A Aminotransferase; NP_28 99.5 1.1E-11 3.8E-16 132.1 26.9 307 254-626 67-395 (396)
164 1s0a_A Adenosylmethionine-8-am 99.5 1.3E-11 4.4E-16 133.5 27.7 307 260-628 89-423 (429)
165 2x5f_A Aspartate_tyrosine_phen 99.5 2E-12 6.8E-17 139.9 21.1 305 255-628 90-428 (430)
166 3fkd_A L-threonine-O-3-phospha 99.5 4.5E-12 1.5E-16 133.0 22.6 279 261-627 54-340 (350)
167 2oqx_A Tryptophanase; lyase, p 99.5 5.4E-12 1.9E-16 137.9 24.0 322 248-627 69-440 (467)
168 3nmy_A Xometc, cystathionine g 99.5 5.9E-12 2E-16 135.4 23.3 217 252-540 66-292 (400)
169 2pb2_A Acetylornithine/succiny 99.5 4.8E-12 1.6E-16 136.8 22.7 299 258-628 100-417 (420)
170 3ez1_A Aminotransferase MOCR f 99.4 7.6E-12 2.6E-16 134.9 24.0 308 260-627 73-413 (423)
171 4adb_A Succinylornithine trans 99.4 9E-12 3.1E-16 133.2 23.7 299 259-628 83-399 (406)
172 1ibj_A CBL, cystathionine beta 99.4 1.2E-12 4E-17 143.7 17.0 158 258-460 134-299 (464)
173 3ihj_A Alanine aminotransferas 99.4 1.4E-11 4.6E-16 136.4 24.9 333 248-627 124-491 (498)
174 3nx3_A Acoat, acetylornithine 99.4 4E-11 1.4E-15 128.0 27.8 296 258-628 79-394 (395)
175 3ppl_A Aspartate aminotransfer 99.4 1.3E-11 4.5E-16 133.3 24.1 308 260-627 81-418 (427)
176 3dxv_A Alpha-amino-epsilon-cap 99.4 2.1E-11 7.1E-16 132.3 25.7 312 257-628 86-424 (439)
177 2oat_A Ornithine aminotransfer 99.4 2.3E-11 7.8E-16 132.4 25.4 302 260-629 121-439 (439)
178 1z7d_A Ornithine aminotransfer 99.4 4.6E-11 1.6E-15 129.7 27.3 299 259-627 109-427 (433)
179 2aeu_A Hypothetical protein MJ 99.4 4.7E-12 1.6E-16 134.9 18.8 297 257-628 58-370 (374)
180 3rq1_A Aminotransferase class 99.4 9.3E-12 3.2E-16 134.0 21.3 312 249-628 76-414 (418)
181 3fsl_A Aromatic-amino-acid ami 99.4 9.5E-12 3.2E-16 132.6 19.9 306 249-625 66-396 (397)
182 2eo5_A 419AA long hypothetical 99.4 2.4E-10 8.3E-15 123.2 30.8 294 260-628 89-417 (419)
183 3if2_A Aminotransferase; YP_26 99.4 1.1E-11 3.7E-16 134.5 20.0 318 249-628 79-439 (444)
184 3n5m_A Adenosylmethionine-8-am 99.4 4E-10 1.4E-14 122.7 32.2 325 257-629 91-452 (452)
185 3i4j_A Aminotransferase, class 99.4 6.6E-11 2.3E-15 127.9 25.6 326 258-628 73-427 (430)
186 3i16_A Aluminum resistance pro 99.4 5.7E-12 2E-16 136.4 16.1 231 262-552 78-339 (427)
187 3qgu_A LL-diaminopimelate amin 99.4 8.9E-11 3E-15 127.6 25.2 304 253-627 111-438 (449)
188 4f4e_A Aromatic-amino-acid ami 99.4 2.1E-11 7E-16 131.6 19.7 310 249-626 88-419 (420)
189 3d6k_A Putative aminotransfera 99.4 6.4E-11 2.2E-15 127.9 23.2 311 260-627 79-416 (422)
190 3b1d_A Betac-S lyase; HET: PLP 99.0 7.5E-14 2.6E-18 149.2 0.0 309 255-627 68-391 (392)
191 1ajs_A Aspartate aminotransfer 99.3 1.2E-11 4.3E-16 132.6 17.1 286 273-628 96-410 (412)
192 1yaa_A Aspartate aminotransfer 99.3 1.7E-11 5.9E-16 131.6 17.8 303 252-628 72-410 (412)
193 3t18_A Aminotransferase class 99.3 1.2E-10 3.9E-15 125.2 24.0 311 249-626 75-411 (413)
194 3a8u_X Omega-amino acid--pyruv 99.3 7.2E-10 2.5E-14 120.5 30.5 321 260-628 96-446 (449)
195 1uu1_A Histidinol-phosphate am 99.3 6.3E-11 2.2E-15 123.6 21.3 269 260-625 59-334 (335)
196 1zod_A DGD, 2,2-dialkylglycine 99.3 2.4E-10 8.1E-15 123.6 25.6 314 260-628 88-431 (433)
197 3ou5_A Serine hydroxymethyltra 99.3 1.8E-10 6.2E-15 122.6 23.6 322 250-626 93-438 (490)
198 3meb_A Aspartate aminotransfer 99.3 4.2E-10 1.4E-14 122.6 27.2 297 261-628 98-443 (448)
199 2ay1_A Aroat, aromatic amino a 99.3 2.5E-11 8.4E-16 129.4 16.8 298 255-626 71-393 (394)
200 3jzl_A Putative cystathionine 99.3 2.1E-11 7.1E-16 131.4 15.9 219 261-539 63-306 (409)
201 3gju_A Putative aminotransfera 99.3 1.1E-09 3.8E-14 119.6 29.8 327 258-627 96-454 (460)
202 3tfu_A Adenosylmethionine-8-am 99.3 3E-10 1E-14 124.2 24.9 310 259-628 120-452 (457)
203 4a6r_A Omega transaminase; tra 99.3 9.6E-10 3.3E-14 120.1 28.6 322 258-627 95-447 (459)
204 3dod_A Adenosylmethionine-8-am 99.3 1.1E-09 3.8E-14 119.1 28.9 323 258-627 88-441 (448)
205 3asa_A LL-diaminopimelate amin 99.3 1.7E-10 5.8E-15 123.4 21.3 293 261-627 79-391 (400)
206 3hvy_A Cystathionine beta-lyas 99.3 3.6E-11 1.2E-15 130.1 16.1 230 261-552 78-339 (427)
207 7aat_A Aspartate aminotransfer 99.3 1E-10 3.4E-15 125.0 19.5 303 254-626 72-400 (401)
208 3hmu_A Aminotransferase, class 99.3 1.6E-09 5.4E-14 119.0 29.0 318 259-627 101-450 (472)
209 3ei9_A LL-diaminopimelate amin 99.3 3.2E-10 1.1E-14 122.5 23.1 301 253-626 98-425 (432)
210 2q7w_A Aspartate aminotransfer 99.3 4.5E-11 1.6E-15 127.3 16.1 279 274-625 92-395 (396)
211 3l44_A Glutamate-1-semialdehyd 99.3 4.6E-10 1.6E-14 121.4 23.1 306 260-628 98-429 (434)
212 3i5t_A Aminotransferase; pyrid 99.3 1.9E-09 6.5E-14 118.5 28.2 322 257-627 97-452 (476)
213 4ffc_A 4-aminobutyrate aminotr 99.2 3E-09 1E-13 116.0 29.5 313 258-628 108-448 (453)
214 3oks_A 4-aminobutyrate transam 99.2 9.6E-09 3.3E-13 111.9 33.2 312 258-628 105-450 (451)
215 1ohv_A 4-aminobutyrate aminotr 99.2 2.5E-09 8.4E-14 117.4 28.6 312 257-629 110-471 (472)
216 3k28_A Glutamate-1-semialdehyd 99.2 6.1E-10 2.1E-14 120.4 23.3 305 260-629 96-427 (429)
217 2cjg_A L-lysine-epsilon aminot 99.2 6.3E-10 2.2E-14 121.3 23.3 311 260-628 104-447 (449)
218 3g7q_A Valine-pyruvate aminotr 99.2 5.5E-10 1.9E-14 119.7 22.5 312 249-628 71-412 (417)
219 3ht4_A Aluminum resistance pro 99.2 7.1E-11 2.4E-15 128.2 14.7 222 259-539 67-312 (431)
220 3fq8_A Glutamate-1-semialdehyd 99.2 8.1E-10 2.8E-14 119.2 21.5 311 257-629 92-427 (427)
221 4e77_A Glutamate-1-semialdehyd 99.2 2.6E-09 9E-14 115.3 25.2 310 258-629 94-429 (429)
222 3f6t_A Aspartate aminotransfer 99.1 3.7E-09 1.3E-13 117.8 23.5 342 252-628 137-524 (533)
223 2epj_A Glutamate-1-semialdehyd 99.1 1.3E-09 4.4E-14 117.9 17.9 309 258-628 97-430 (434)
224 4eu1_A Mitochondrial aspartate 99.1 7.5E-09 2.5E-13 110.9 22.9 307 247-626 73-408 (409)
225 2cy8_A D-phgat, D-phenylglycin 99.1 6E-09 2.1E-13 113.4 22.3 307 255-627 95-433 (453)
226 3vp6_A Glutamate decarboxylase 98.9 8.4E-10 2.9E-14 122.4 7.0 285 91-421 26-328 (511)
227 2e7u_A Glutamate-1-semialdehyd 98.9 8.1E-08 2.8E-12 103.4 21.6 306 258-625 93-423 (424)
228 4ao9_A Beta-phenylalanine amin 98.9 2.1E-07 7.2E-12 101.1 23.3 304 259-628 129-445 (454)
229 4atq_A 4-aminobutyrate transam 98.8 2.1E-06 7.1E-11 93.5 30.4 311 260-627 110-453 (456)
230 3k40_A Aromatic-L-amino-acid d 98.8 7E-10 2.4E-14 121.9 2.3 246 137-421 47-314 (475)
231 4e1o_A HDC, histidine decarbox 98.8 1.4E-09 4.8E-14 119.7 4.4 282 90-421 12-321 (481)
232 3bwn_A AT1G70560, L-tryptophan 98.8 1.2E-07 4.2E-12 101.1 19.0 286 256-627 71-385 (391)
233 4e3q_A Pyruvate transaminase; 98.7 2.1E-05 7.1E-10 86.0 30.9 323 259-628 113-467 (473)
234 2hox_A ALLIIN lyase 1; cystein 98.6 2.1E-07 7.3E-12 100.5 12.2 292 255-627 102-423 (427)
235 2zy4_A L-aspartate beta-decarb 98.5 9.8E-06 3.4E-10 90.3 22.1 160 275-460 166-335 (546)
236 2okj_A Glutamate decarboxylase 98.5 1.9E-07 6.4E-12 103.1 7.7 286 88-421 20-325 (504)
237 2yky_A Beta-transaminase; tran 97.8 2.6E-08 8.8E-13 108.8 0.0 308 258-628 141-459 (465)
238 4a0g_A Adenosylmethionine-8-am 98.4 8.1E-06 2.8E-10 95.2 19.7 326 261-629 428-828 (831)
239 1js3_A DDC;, DOPA decarboxylas 98.3 8.5E-08 2.9E-12 105.3 1.4 242 137-421 47-315 (486)
240 2jis_A Cysteine sulfinic acid 98.3 8.5E-07 2.9E-11 98.2 8.9 238 137-422 83-340 (515)
241 3k7y_A Aspartate aminotransfer 98.2 1.6E-05 5.5E-10 85.2 16.4 307 249-629 68-405 (405)
242 2qma_A Diaminobutyrate-pyruvat 98.1 2.1E-06 7.1E-11 94.6 5.7 94 137-235 74-174 (497)
243 4h51_A Aspartate aminotransfer 97.6 0.0025 8.4E-08 68.4 20.1 283 277-629 112-417 (420)
244 3bc8_A O-phosphoseryl-tRNA(SEC 96.2 0.0046 1.6E-07 66.6 6.0 60 354-421 216-278 (450)
245 2dgk_A GAD-beta, GADB, glutama 95.9 0.0038 1.3E-07 67.3 3.7 44 124-167 6-51 (452)
246 3hbx_A GAD 1, glutamate decarb 94.8 0.038 1.3E-06 60.5 7.2 42 123-167 18-60 (502)
247 3mad_A Sphingosine-1-phosphate 79.4 5.6 0.00019 43.0 9.4 39 133-171 68-107 (514)
248 2z67_A O-phosphoseryl-tRNA(SEC 69.3 73 0.0025 33.4 14.9 67 346-421 243-310 (456)
249 2pju_A Propionate catabolism o 66.1 41 0.0014 32.1 10.9 71 311-403 107-177 (225)
250 3f9t_A TDC, L-tyrosine decarbo 64.5 74 0.0025 31.8 13.4 37 135-171 4-40 (397)
251 2q5c_A NTRC family transcripti 62.5 40 0.0014 31.3 9.9 71 311-403 95-165 (196)
252 3fkr_A L-2-keto-3-deoxyarabona 49.9 12 0.00041 37.7 4.1 66 341-406 17-85 (309)
253 3b4u_A Dihydrodipicolinate syn 48.5 14 0.00047 37.0 4.2 55 343-397 14-68 (294)
254 3l21_A DHDPS, dihydrodipicolin 47.8 13 0.00044 37.4 3.9 64 342-405 25-91 (304)
255 3flu_A DHDPS, dihydrodipicolin 47.7 13 0.00044 37.2 3.9 61 343-403 18-81 (297)
256 1f6k_A N-acetylneuraminate lya 46.6 14 0.00049 36.8 4.1 65 343-407 14-82 (293)
257 2wkj_A N-acetylneuraminate lya 46.2 15 0.00052 36.9 4.2 64 343-406 22-88 (303)
258 3dz1_A Dihydrodipicolinate syn 46.1 14 0.00047 37.4 3.8 62 343-404 19-82 (313)
259 3cpr_A Dihydrodipicolinate syn 46.0 15 0.0005 37.0 4.0 65 343-407 27-94 (304)
260 1w3i_A EDA, 2-keto-3-deoxy glu 45.6 15 0.0005 36.8 3.9 55 343-397 10-64 (293)
261 3na8_A Putative dihydrodipicol 45.6 13 0.00046 37.5 3.6 61 343-403 35-98 (315)
262 1xky_A Dihydrodipicolinate syn 45.4 15 0.00051 36.9 3.9 64 343-406 23-89 (301)
263 3tak_A DHDPS, dihydrodipicolin 45.3 13 0.00044 37.1 3.5 61 343-403 12-75 (291)
264 3s5o_A 4-hydroxy-2-oxoglutarat 44.8 14 0.00048 37.2 3.6 56 342-397 24-79 (307)
265 2nuw_A 2-keto-3-deoxygluconate 44.6 12 0.00042 37.2 3.2 55 343-397 10-64 (288)
266 3si9_A DHDPS, dihydrodipicolin 44.6 14 0.00047 37.4 3.6 61 343-403 33-96 (315)
267 2ojp_A DHDPS, dihydrodipicolin 44.6 14 0.00046 37.0 3.5 64 343-406 12-78 (292)
268 3qze_A DHDPS, dihydrodipicolin 44.6 14 0.00047 37.4 3.5 61 343-403 34-97 (314)
269 2v9d_A YAGE; dihydrodipicolini 43.1 18 0.00063 37.0 4.3 67 340-406 39-108 (343)
270 3h5d_A DHDPS, dihydrodipicolin 42.6 14 0.00047 37.3 3.2 61 343-403 18-81 (311)
271 2r8w_A AGR_C_1641P; APC7498, d 41.6 17 0.00059 37.0 3.7 64 343-406 45-111 (332)
272 2hmc_A AGR_L_411P, dihydrodipi 41.1 33 0.0011 35.1 5.8 62 343-404 37-98 (344)
273 4dpp_A DHDPS 2, dihydrodipicol 41.0 20 0.00069 37.0 4.1 62 342-403 69-133 (360)
274 1fov_A Glutaredoxin 3, GRX3; a 40.0 97 0.0033 23.1 7.3 70 312-395 2-73 (82)
275 3mc6_A Sphingosine-1-phosphate 39.6 25 0.00087 37.3 4.9 40 133-172 35-76 (497)
276 3a5f_A Dihydrodipicolinate syn 39.5 20 0.00069 35.7 3.8 63 343-406 13-78 (291)
277 3h8q_A Thioredoxin reductase 3 39.1 1.3E+02 0.0044 24.7 8.5 73 311-391 17-91 (114)
278 3eb2_A Putative dihydrodipicol 37.8 14 0.00048 37.0 2.3 54 343-396 15-68 (300)
279 3qfe_A Putative dihydrodipicol 35.0 17 0.00059 36.8 2.5 61 343-403 21-85 (318)
280 3e96_A Dihydrodipicolinate syn 33.6 18 0.00062 36.5 2.4 61 343-403 22-86 (316)
281 4g81_D Putative hexonate dehyd 33.5 1.8E+02 0.0062 28.0 9.6 97 269-385 4-103 (255)
282 3d0c_A Dihydrodipicolinate syn 32.7 20 0.00068 36.2 2.5 66 342-407 21-90 (314)
283 4fgs_A Probable dehydrogenase 31.8 2E+02 0.0067 28.1 9.6 93 275-386 29-121 (273)
284 3ic4_A Glutaredoxin (GRX-1); s 31.0 1.6E+02 0.0054 22.6 7.4 75 311-395 12-91 (92)
285 2yxg_A DHDPS, dihydrodipicolin 30.7 22 0.00076 35.3 2.5 53 343-396 12-64 (289)
286 2r91_A 2-keto-3-deoxy-(6-phosp 30.7 21 0.00073 35.4 2.3 54 343-397 10-63 (286)
287 2ehh_A DHDPS, dihydrodipicolin 29.1 23 0.0008 35.3 2.3 63 343-406 12-77 (294)
288 1o5k_A DHDPS, dihydrodipicolin 28.8 25 0.00087 35.2 2.5 63 343-406 24-89 (306)
289 2pcq_A Putative dihydrodipicol 27.3 19 0.00067 35.7 1.3 60 342-403 8-67 (283)
290 1t1v_A SH3BGRL3, SH3 domain-bi 27.0 2.2E+02 0.0076 22.1 7.9 69 311-390 2-80 (93)
291 2yan_A Glutaredoxin-3; oxidore 24.8 2.5E+02 0.0085 22.4 7.7 69 311-390 17-92 (105)
292 3m5v_A DHDPS, dihydrodipicolin 24.2 28 0.00097 34.8 1.9 63 343-406 19-85 (301)
293 3qmx_A Glutaredoxin A, glutare 24.1 2.7E+02 0.0093 22.1 8.3 70 310-390 15-87 (99)
294 2rfg_A Dihydrodipicolinate syn 23.8 32 0.0011 34.3 2.1 51 346-396 14-64 (297)
295 3grp_A 3-oxoacyl-(acyl carrier 22.9 3.8E+02 0.013 25.4 9.9 91 276-385 28-118 (266)
296 2od6_A Hypothetical protein; m 22.7 2.7E+02 0.0093 21.6 7.2 55 570-624 28-82 (110)
297 3rih_A Short chain dehydrogena 22.6 5.1E+02 0.017 25.0 10.9 94 275-384 41-135 (293)
298 3daq_A DHDPS, dihydrodipicolin 21.8 41 0.0014 33.4 2.5 60 343-403 14-76 (292)
299 2vc6_A MOSA, dihydrodipicolina 21.5 30 0.001 34.4 1.4 53 343-396 12-64 (292)
300 3rpc_A Possible metal-dependen 21.4 3.8E+02 0.013 25.4 9.5 77 315-399 163-249 (264)
301 1uta_A FTSN, MSGA, cell divisi 21.4 95 0.0033 24.0 4.1 46 575-626 24-70 (81)
302 2klx_A Glutaredoxin; thioredox 21.2 2.7E+02 0.0094 21.1 8.1 64 311-387 6-72 (89)
303 3nzn_A Glutaredoxin; structura 20.9 2E+02 0.0067 22.9 6.2 74 311-393 22-100 (103)
No 1
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=2.2e-66 Score=579.00 Aligned_cols=491 Identities=47% Similarity=0.832 Sum_probs=439.6
Q ss_pred cccccccCCCCchHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhc
Q psy1785 77 KTSGVCSYESLPEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQY 156 (629)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y 156 (629)
++++-.++|+.++.+++++++++++|+++ +|+++..+++.+|+++..|++++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~~----------------------- 63 (511)
T 3vp6_A 8 NLFARDLLPAKNGEEQTVQFLLEVVDILL-NYVRKTFDRSTKVLDFHHPHQLLEGME----------------------- 63 (511)
T ss_dssp TCCGGGSTTSTTCHHHHHHHHHHHHHHHH-HHHHHHTCTTSCSCCCCCHHHHHHCBT-----------------------
T ss_pred hhcccccCCCCCChHHHHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCHHHHHHHHh-----------------------
Confidence 34556788999999999999999999999 999999999888999999999888732
Q ss_pred ccccCCcccccccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHH
Q psy1785 157 SVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQ 236 (629)
Q Consensus 157 ~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~ 236 (629)
.++.++|+.|+++++|++.+++++.++++++||+|+||++++.++.+++++
T Consensus 64 -----------------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e 114 (511)
T 3vp6_A 64 -----------------------------GFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGE 114 (511)
T ss_dssp -----------------------------TBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCCHHHHHHH
T ss_pred -----------------------------hCCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCcHHHHHHH
Confidence 022567877888888888888888888888999999999999999999999
Q ss_pred HHHHhcCCCccccccChhHHHHHHHHHHHHHHHhCCCC--CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeE
Q psy1785 237 WLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQG--GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLV 314 (629)
Q Consensus 237 ~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~--~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~v 314 (629)
++++++|++...|..+|....+|.++.+|+++++|++. .+++|++|||++|+.++.+++.+.+++.++.|+...|+.+
T Consensus 115 ~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~ 194 (511)
T 3vp6_A 115 WLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLV 194 (511)
T ss_dssp HHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEE
T ss_pred HHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeE
Confidence 99999999999999999999999999999999999984 6899999999999999999999888888899976668889
Q ss_pred EEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHH
Q psy1785 315 LYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADIC 394 (629)
Q Consensus 315 v~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~ 394 (629)
|+++..+|+|+.++++.+|+|.++++.||+|++|+||+++|+++|.+..++|..|++|++++|+|.+|.+|||++|+++|
T Consensus 195 v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia 274 (511)
T 3vp6_A 195 LFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC 274 (511)
T ss_dssp EEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHH
T ss_pred EEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999888888899999999999999999999999999
Q ss_pred HHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCc
Q psy1785 395 AEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASY 470 (629)
Q Consensus 395 ~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~y 470 (629)
++||+|+|| ||+++.+.++ +++.. |++. |||+++|+|||+++|.+||+++++++..+..+++..+.|
T Consensus 275 ~~~~~~lhvD~a~~~~~~~~~--------~~~~~~~g~~~-aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y 345 (511)
T 3vp6_A 275 EKYNLWLHVDAAWGGGLLMSR--------KHRHKLNGIER-ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASY 345 (511)
T ss_dssp HHHTCEEEEEETTGGGGGGCT--------TTGGGGTTGGG-CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTT
T ss_pred HHcCCEEEEEccchhhHhhCh--------hhhhhccCCcc-CCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCcc
Confidence 999999999 8998887765 44443 6777 999999999999999999999999988888888888999
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEE
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNIS 549 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~ 549 (629)
++.....++..+++++++++++|++.++++|++|+.+|.+|+++++++..++++++++.|+++|||+++.+ +|.+++||
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~ 425 (511)
T 3vp6_A 346 LFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 425 (511)
T ss_dssp TCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEE
T ss_pred ccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 99887766777889999999999999999999999999999999999999999999999999999999863 48899999
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
|++.|.++++..++......+++.+.++.++|.++|.+++++++..+..++||++++|+.+|++||++++++|++++++|
T Consensus 426 f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 426 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99998876654434455566788888999999999988888777666556899999889999999999999999999875
No 2
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=5.6e-61 Score=534.72 Aligned_cols=491 Identities=46% Similarity=0.828 Sum_probs=421.0
Q ss_pred cccccccCCCCchHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhc
Q psy1785 77 KTSGVCSYESLPEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQY 156 (629)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y 156 (629)
.+++-.++|+..+.+++++++++++|+++ +|+++..+++.||+++..|+++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~~----------------------- 60 (504)
T 2okj_A 5 NLFARDLLPAKNGEEQTVQFLLEVVDILL-NYVRKTFDRSTKVLDFHHPHQLLEGME----------------------- 60 (504)
T ss_dssp TCCGGGSTTSTTCHHHHHHHHHHHHHHHH-HHHHHHTCTTSCSCCCCCHHHHHSCBT-----------------------
T ss_pred hhhhccccCCCCCHHHHHHHHHHHHHHHH-HHHHhhccCCCCCCCCCCHHHHHHHhh-----------------------
Confidence 35566789999999999999999999999 899998888778988888888887722
Q ss_pred ccccCCcccccccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHH
Q psy1785 157 SVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQ 236 (629)
Q Consensus 157 ~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~ 236 (629)
.++.++|+.|.+++++++.+++++.+++.++||+|+++++++.++.+++++
T Consensus 61 -----------------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 111 (504)
T 2okj_A 61 -----------------------------GFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGE 111 (504)
T ss_dssp -----------------------------TBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCCCCHHHHHHH
T ss_pred -----------------------------ccCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCCCCHHHHHHH
Confidence 022567877888888888888888888888899999999999999999999
Q ss_pred HHHHhcCCCccccccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeE
Q psy1785 237 WLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLV 314 (629)
Q Consensus 237 ~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~v 314 (629)
++++++|+|...|+.+|....+|.++++|+++++|++ ..+++|++|||++|++++.++|.+..++.++.|+...++.+
T Consensus 112 ~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~ 191 (504)
T 2okj_A 112 WLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLV 191 (504)
T ss_dssp HHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEE
T ss_pred HHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeE
Confidence 9999999999999999999999999999999999998 67899999999999999999998777776767753334668
Q ss_pred EEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHH
Q psy1785 315 LYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADIC 394 (629)
Q Consensus 315 v~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~ 394 (629)
|+++..+|+|+.+++..+|+|.++++.||++++|+||+++|+++|+++.++|..|++|+++.|+|.+|.+|||++|+++|
T Consensus 192 v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la 271 (504)
T 2okj_A 192 LFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC 271 (504)
T ss_dssp EEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHH
T ss_pred EEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 99999999999999999999877999999999999999999999998888887899999999999999999999999999
Q ss_pred HHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCc
Q psy1785 395 AEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASY 470 (629)
Q Consensus 395 ~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~y 470 (629)
+++|+|+|| ||+++.+.++ +++.. +++. +||+++|+|||+++|++||++++|++..+..++...++|
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~--------~~~~~~~g~~~-~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~ 342 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSR--------KHRHKLNGIER-ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGY 342 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCT--------TTGGGGTTGGG-CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSS
T ss_pred HHcCCEEEEehhhhhHHHhCH--------hhHhhcCCccc-CCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCcc
Confidence 999999999 7888876654 33222 4566 999999999999999999999999977776666677889
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEE
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNIS 549 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~ 549 (629)
+......++..+++++++++++||++++++|++++.+|.+|+++++++..+++++|.+.|+++++|+++.+ +|..++||
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~ 422 (504)
T 2okj_A 343 LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 422 (504)
T ss_dssp SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEE
T ss_pred ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 97655444445678889999999999999999999999999999999999999999999999999998852 37889999
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
|++.|....+..+..++...+++.+.++.++|.++|.++++++++.+..+++|++++|+.+|++||+++++.|+++++++
T Consensus 423 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 423 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp EEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99876532221122344555666778899999999988777766665446899999889999999999999999988764
No 3
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=2e-60 Score=531.69 Aligned_cols=486 Identities=52% Similarity=0.921 Sum_probs=408.7
Q ss_pred ccccccCCCC-chHHHHHHHHHHHHHHHHHh-hhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhh
Q psy1785 78 TSGVCSYESL-PEQVRHERFFRDAFEVLLRD-GVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQ 155 (629)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~d~l~~~-~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~ 155 (629)
+.+-.++|+. .+.+++++++++++|+++ + |+++..++..||+++..|++++..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~p~~l~~~~~---------------------- 79 (515)
T 2jis_A 23 MADSEALPSLAGDPVAVEALLRAVFGVVV-DEAIQKGTSVSQKVCEWKEPEELKQLLD---------------------- 79 (515)
T ss_dssp ------CCCCSCCHHHHHHHHHHHHHHHH-HHTTTGGGCTTSCSCCCCCHHHHHHHHC----------------------
T ss_pred hhhccccCCCCCCHHHHHHHHHHHHHHHH-HHHHHhcccccCCCCCCCCHHHHHhhcc----------------------
Confidence 3444668887 789999999999999999 7 99998888778888888888887766
Q ss_pred cccccCCcccccccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHH
Q psy1785 156 YSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVG 235 (629)
Q Consensus 156 y~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~ 235 (629)
..+|+.|.+++++++.+++++.+++.++||+|+++++++..+.++++
T Consensus 80 ---------------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 126 (515)
T 2jis_A 80 ---------------------------------LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAG 126 (515)
T ss_dssp ---------------------------------CCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCCCCHHHHHH
T ss_pred ---------------------------------cCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCCCCHHHHHH
Confidence 56777788888888888888888887789999999999999999999
Q ss_pred HHHHHhcCCCccccccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEE
Q psy1785 236 QWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVL 315 (629)
Q Consensus 236 ~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv 315 (629)
++++.+.|++...|+.+|.+.++|.++++|+++++|++..+++|++|||++|+.++.++|.+..+..++.|....++.+|
T Consensus 127 ~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~v 206 (515)
T 2jis_A 127 RIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLAL 206 (515)
T ss_dssp HHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEE
T ss_pred HHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEE
Confidence 99999999999899999999999999999999999999888999999999999999999987665555556322356789
Q ss_pred EEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHH
Q psy1785 316 YTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICA 395 (629)
Q Consensus 316 ~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~ 395 (629)
+++..+|+|+.++++.+|+|.++++.||++++|+||+++|+++|.+..++|..|++|++++|+|.+|.+||+++|+++|+
T Consensus 207 l~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~ 286 (515)
T 2jis_A 207 FTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQ 286 (515)
T ss_dssp EEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999988887878999999999999999999999999999
Q ss_pred HcCCeEEE--ecCccccccccccccccccccc-c-ccCCcceEEEeCCCCCCCCCCccEEEEEecc-chhhhhhcCCCCc
Q psy1785 396 EYDMADSV--TWNPHKLLTAPQQCSVFLTRRN-Y-VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQ-SVLTECHSASASY 470 (629)
Q Consensus 396 ~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~-~-~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~-~~l~~~~~~~~~y 470 (629)
++|+|+|| ||++..+..+ .++. + +++. +||+++|+|||+++|++||++++|++ .++..++...++|
T Consensus 287 ~~g~~l~vD~a~~~~~~~~~--------~~~~~~~g~~~-aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~y 357 (515)
T 2jis_A 287 RHGLWLHVDAAWGGSVLLSQ--------THRHLLDGIQR-ADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASY 357 (515)
T ss_dssp HHTCEEEEEETTGGGGGGCT--------TTGGGGTTGGG-CSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC----
T ss_pred HcCCeEEEehhhhhHHHhCh--------hhHhhcCCCcc-CCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchh
Confidence 99999999 7888776654 2322 2 4566 99999999999999999999999997 6666666667889
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEE
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISF 550 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F 550 (629)
+.+....++..+++++++++++||++++++|++++.+|.+|+++++++..+++++|.+.|+++|+|+++. +|.+++|||
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~v~f 436 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM-EPEFVNVCF 436 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-CCSSSEEEE
T ss_pred ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CCCeeEEEE
Confidence 9765443444567888899999999999999999999999999999999999999999999999999987 688899999
Q ss_pred EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 551 ~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
++.|...++..+..++...|++++..+.++|.++|.++++++.+.+..+++|++++|+.+|++|||++++.|++++++|
T Consensus 437 ~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 437 WFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp EECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 9977543332122355667777788899999999988877766655556999999779999999999999999998765
No 4
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-61 Score=530.95 Aligned_cols=452 Identities=23% Similarity=0.321 Sum_probs=394.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhcccccCCccccc
Q psy1785 88 PEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVN 167 (629)
Q Consensus 88 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~ 167 (629)
-+++++++++++++|++. +|+++..++ ||+.+..|+++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~~~~~~---------------------------------- 48 (481)
T 4e1o_A 6 MEPEEYRERGREMVDYIC-QYLSTVRER--RVTPDVQPGYLRAQLP---------------------------------- 48 (481)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHSGGGS--CSSCCCCTTTTGGGSC----------------------------------
T ss_pred CCHHHHHHHHHHHHHHHH-HHHhccccC--CCCCCCCHHHHHHhcC----------------------------------
Confidence 467899999999999999 899988887 8888888887777776
Q ss_pred ccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhccc-ccCCCCccccccCCCCChHHHHHHHHHHhcCCCc
Q psy1785 168 QLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYS-VKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSV 246 (629)
Q Consensus 168 ~l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~-~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~ 246 (629)
..+|+.|.+.+++++.+++.+.+. +.+.||+|++|++++.++.++++++++.++|+|.
T Consensus 49 ---------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 107 (481)
T 4e1o_A 49 ---------------------ESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLG 107 (481)
T ss_dssp ---------------------SSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCC
T ss_pred ---------------------CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhCccc
Confidence 456777777777777777765554 4468999999999999999999999999999999
Q ss_pred cccccChhHHHHHHHHHHHHHHHhCCCC----------CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCC-----CCC
Q psy1785 247 YTYEVSPVFSLMEEHVLAQMRTIVGFQG----------GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA-----SCP 311 (629)
Q Consensus 247 ~~~~~~p~~~~~E~~~~~~l~~l~G~~~----------~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~-----~~p 311 (629)
..|..+|.+..+|.++++|+++++|++. ++|++|+|||++|+.++.++|.+..++.+..|.. ..|
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 9999999999999999999999999985 3789999999999999999999877655544310 026
Q ss_pred CeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHH
Q psy1785 312 RLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIA 391 (629)
Q Consensus 312 ~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~ 391 (629)
+.+|+++..+|+|+.+++.+.|. +++.||+|++|+||+++|+++|.+..++|..|++|++++|+|.+|++|||++|+
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~ 264 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLISLV---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELG 264 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHHTC---EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred CeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHH
Confidence 78999999999999999999888 999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC
Q psy1785 392 DICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS 467 (629)
Q Consensus 392 ~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~ 467 (629)
++|++||+|+|| ||+++.++++ .++.+ |++. +||+++|+|||+++|++||++++|++..+..++...
T Consensus 265 ~la~~~~~~lhvDaA~g~~~~~~~--------~~~~~~~gi~~-aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~ 335 (481)
T 4e1o_A 265 PICAREGLWLHIDAAYAGTAFLCP--------EFRGFLKGIEY-ADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVN 335 (481)
T ss_dssp HHHHHHTCEEEEECTTGGGGGGSG--------GGGGGGTTGGG-CSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCC
T ss_pred HHHHHcCCeEEeehhhHHHHHhCh--------hhHHHhcCccc-CCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCC
Confidence 999999999999 8988876665 44443 6777 999999999999999999999999988887777888
Q ss_pred CCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE
Q psy1785 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN 547 (629)
Q Consensus 468 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~ 547 (629)
+.|+..... +..+++.++++++||++.++++|++++.+|.+|+++++++.+++++++++.|+++|||+++. ++.+++
T Consensus 336 ~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~ 412 (481)
T 4e1o_A 336 PIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGL 412 (481)
T ss_dssp CGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS-CCCSSE
T ss_pred chhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeE
Confidence 899976542 33457788999999999999999999999999999999999999999999999999999987 788999
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 548 v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
|||++.+. +..+.++.++|.++|.++++++.+.+. .++|++++|+.+|++||+++++.|+++++
T Consensus 413 v~f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~~~g~-~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 413 VVFRLKGP---------------NSLTENVLKEIAKAGRLFLIPATIQDK-LIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp EEEEESSC---------------HHHHHHHHHHHHHHCSSBCEEEEETTE-EEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCc---------------hHHHHHHHHHHHhCCeEEEEeeEECCE-EEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99998532 112357888999999877777777765 58999999999999999999999999876
Q ss_pred c
Q psy1785 628 D 628 (629)
Q Consensus 628 ~ 628 (629)
+
T Consensus 477 ~ 477 (481)
T 4e1o_A 477 L 477 (481)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=4.2e-61 Score=531.76 Aligned_cols=450 Identities=21% Similarity=0.306 Sum_probs=372.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhcccccCCcccccc
Q psy1785 89 EQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQ 168 (629)
Q Consensus 89 ~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~~ 168 (629)
+++++++++++++|++. +|+++..++ ||+.+..|+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~--~v~~~~~p~~l~~~~~----------------------------------- 43 (475)
T 3k40_A 2 EAPEFKDFAKTMVDFIA-EYLENIRER--RVLPEVKPGYLKPLIP----------------------------------- 43 (475)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHTGGGS--CSSCSSCTTCSGGGSC-----------------------------------
T ss_pred CHHHHHHHHHHHHHHHH-HHHhccccC--CCCCCCCHHHHHHhcC-----------------------------------
Confidence 56899999999999999 999998888 8888888888887776
Q ss_pred cccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhccc-ccCCCCccccccCCCCChHHHHHHHHHHhcCCCcc
Q psy1785 169 LFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYS-VKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVY 247 (629)
Q Consensus 169 l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~-~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~ 247 (629)
..+|+.|.+.+++++.+++.+.+. +.+.||+|+++++++.++.+++++++++.+|+|..
T Consensus 44 --------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~ 103 (475)
T 3k40_A 44 --------------------DAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGF 103 (475)
T ss_dssp --------------------SSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSS
T ss_pred --------------------CCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCcccc
Confidence 456777777777777777765544 45689999999999999999999999999999999
Q ss_pred ccccChhHHHHHHHHHHHHHHHhCCCC---------CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCC-----CCCCe
Q psy1785 248 TYEVSPVFSLMEEHVLAQMRTIVGFQG---------GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA-----SCPRL 313 (629)
Q Consensus 248 ~~~~~p~~~~~E~~~~~~l~~l~G~~~---------~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~-----~~p~~ 313 (629)
.|..+|.++.+|.++++|+++++|++. ++|+||+|||++|+.|+.++|.+..++.+..|.. ..|+.
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 999999999999999999999999985 3699999999999999999998876655443310 02567
Q ss_pred EEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHH
Q psy1785 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADI 393 (629)
Q Consensus 314 vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i 393 (629)
+|+++..+|+|+.+++++.|+ +++.||+|++| ||+++|+++|.+..++|..|++|++++|+|.+|.+|||++|+++
T Consensus 184 ~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLGGV---KLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp EEEEETTSCHHHHHHHHHHTC---EEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHcCC---ceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 999999999999999999999 99999999999 99999999999988888889999999999999999999999999
Q ss_pred HHHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCC
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
|++||+|+|| ||+++.++.+ .++.. +++. +||+++|+|||+++|++||++++|++..+..++...+.
T Consensus 260 a~~~~~~lhvD~A~~~~~~~~~--------~~~~~~~gi~~-~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~ 330 (475)
T 3k40_A 260 GNKHNLWIHVDAAYAGSAFICP--------EYRHLMKGIES-ADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPL 330 (475)
T ss_dssp HHHTTCEEEEECTTGGGGGGSG--------GGGGGGTTGGG-CSEEEECHHHHSSCCSSCEEEEESSGGGC---------
T ss_pred HHHhCCeEEEeHHhHHHHHhCH--------hhHHHhcCccc-CCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcc
Confidence 9999999999 8988776655 33332 6777 99999999999999999999999998877777777889
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNIS 549 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~ 549 (629)
|+..... +..+++.++++++||+++++++|++|+.+|.+|+++++++.+++++++++.|+++|||+++. +|.+++||
T Consensus 331 yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~-~~~~~iv~ 407 (475)
T 3k40_A 331 YLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA-EINMGLVC 407 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS-CCBTTEEE
T ss_pred ccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec-CCceEEEE
Confidence 9976432 23467788999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
|++.+. +..+.++.++|.++|.++++++.+.+. .++|++++|+.+|++||+++++.|++++++
T Consensus 408 f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~~~g~-~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 408 FRLKGS---------------NERNEALLKRINGRGHIHLVPAKIKDV-YFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EEESSC---------------HHHHHHHHHHHHHHTSCBCEEEEETTE-EEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCc---------------hHHHHHHHHHHHhCCcEEEEeeEECCE-EEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 998542 112357888999999888887777775 589999999999999999999999998765
No 6
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=9.4e-56 Score=490.22 Aligned_cols=453 Identities=21% Similarity=0.314 Sum_probs=373.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhcccccCCcccccc
Q psy1785 89 EQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQ 168 (629)
Q Consensus 89 ~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~~ 168 (629)
+.+++++++++++|.+. +|+++..++ ||+.+..|+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~----------------------------------- 43 (486)
T 1js3_A 2 NASDFRRRGKEMVDYMA-DYLEGIEGR--QVYPDVQPGYLRPLIP----------------------------------- 43 (486)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHTGGGS--CSSCCCCTTCSGGGSC-----------------------------------
T ss_pred CHHHHHHHHHHHHHHHH-HHHhhcccC--CCCCCCCHHHHHHhcc-----------------------------------
Confidence 46789999999999998 899888777 7888777777776665
Q ss_pred cccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhccc-ccCCCCccccccCCCCChHHHHHHHHHHhcCCCcc
Q psy1785 169 LFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYS-VKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVY 247 (629)
Q Consensus 169 l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~-~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~ 247 (629)
..+|+.|.+++++++.+++.+.++ ..+.||+|++|++++.++.+.++++++.++|++..
T Consensus 44 --------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 103 (486)
T 1js3_A 44 --------------------ATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGF 103 (486)
T ss_dssp --------------------SSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCS
T ss_pred --------------------ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCcc
Confidence 567777888888888888765444 45679999999999999999999999999999998
Q ss_pred ccccChhHHHHHHHHHHHHHHHhCCCC---------CCeEEeCCchhhHHHHHHHHHHhhchhHHhc-CCC----CCCCe
Q psy1785 248 TYEVSPVFSLMEEHVLAQMRTIVGFQG---------GDGIFCPGGSMANGYAISCARHHAFPQIKTQ-GLA----SCPRL 313 (629)
Q Consensus 248 ~~~~~p~~~~~E~~~~~~l~~l~G~~~---------~~g~~~~GgT~an~~al~~ar~~~~~~~~~~-G~~----~~p~~ 313 (629)
.|..+|....+|.++.+|+++++|++. ++|++|+|||+||+.++.+++.+..++.+.. |-. ..++.
T Consensus 104 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 899999999999999999999999985 4689999999999999999987644332222 200 01356
Q ss_pred EEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHH
Q psy1785 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADI 393 (629)
Q Consensus 314 vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i 393 (629)
+|+++..+|+|+.++++.+|+ +++.||+|++|+||+++|+++|.+..++|..|++|++++|+|.+|++|||++|+++
T Consensus 184 ~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~l 260 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI 260 (486)
T ss_dssp EEEEETTCCHHHHHHHHHHTC---EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHhCCC---ceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 789999999999999999999 89999999999999999999999988888889999999999999999999999999
Q ss_pred HHHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCC
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
|++||+|+|| ||+++.+..+ .++.+ +++. +||+++|+|||+++|++||++++|++..+.+.+...+.
T Consensus 261 a~~~~~~lhvD~a~g~~~~~~~--------~~~~~~~g~~~-adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~ 331 (486)
T 1js3_A 261 CHEEDIWLHVDAAYAGSAFICP--------EFRHLLNGVEF-ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPV 331 (486)
T ss_dssp HHHTTCEEEEECTTGGGGGGST--------TTGGGGTTGGG-CSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC----
T ss_pred HHHcCCEEEEehhhHHHHHHCH--------HHHHHhcCccc-cCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCch
Confidence 9999999999 8988776654 33332 5666 99999999999999999999999997665666666678
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNIS 549 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~ 549 (629)
|+.......+...++.+++++++|++.++++|++++.+|.+|+++++++..++++++.+.|+++|+|+++. +|.++++|
T Consensus 332 yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~v~ 410 (486)
T 1js3_A 332 YLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVC 410 (486)
T ss_dssp --------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS-CCCSSEEE
T ss_pred hhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCceeEEE
Confidence 88764322223456667889999999999999999999999999999999999999999999999999987 68899999
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
|++.+. +.++.++.++|.++|.++++++.+.+. +++|++++++.+|++||+++++.|++++++
T Consensus 411 f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~~~~~-~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 411 FRLKGS---------------DGLNEALLERINSARKIHLVPCRLRGQ-FVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp EEESSC---------------HHHHHHHHHHHHHHTSCBCEEEEETTE-EEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCh---------------HHHHHHHHHHHHhcCCEEEEEEEECCE-EEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 997531 112346788888899876666666554 599999988999999999999999887653
No 7
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.4e-52 Score=464.33 Aligned_cols=467 Identities=21% Similarity=0.321 Sum_probs=374.6
Q ss_pred cccccccCCCCchHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhc
Q psy1785 77 KTSGVCSYESLPEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQY 156 (629)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y 156 (629)
.+.++|+-|...+.+++++.+++++|.+. +|++.. ++ | +....|+++++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~-~~~~~~~~~~~~~~~---------------------- 70 (497)
T 2qma_A 18 EWKKHFIHTGELGSAEFASVMSHTTSAMK-SVFEQV-NA--P-YSGMDPKALEDAINA---------------------- 70 (497)
T ss_dssp HHGGGBCCSSTTTTHHHHHHHHHHHHHHH-HHHHHC-CS--S-SCCCCHHHHHHHHHT----------------------
T ss_pred hHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHHhhc-cC--C-CCCCCHHHHHHhccc----------------------
Confidence 46788999999999999999999999999 888776 33 2 555667777766651
Q ss_pred ccccCCcccccccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHH-HhcccccCCCCccccccCCCCChHHHHH
Q psy1785 157 SVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKT-VIQYSVKTGHPYFVNQLFSSVDPYGLVG 235 (629)
Q Consensus 157 ~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~~~~~~~il~~l~~-~~~~~~~~~~p~~~g~~~s~~~~~~~~~ 235 (629)
..+|+.+.+.+++++.+.+ ++.+.+.+.||+|++++.++..+.++++
T Consensus 71 --------------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~ 118 (497)
T 2qma_A 71 --------------------------------VDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAA 118 (497)
T ss_dssp --------------------------------CCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHH
T ss_pred --------------------------------cCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHH
Confidence 2356667777777777754 4556677889999999999999999999
Q ss_pred HHHHHhcCCCccccccChhHHHHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhc-----hhHHhcCCCC
Q psy1785 236 QWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAF-----PQIKTQGLAS 309 (629)
Q Consensus 236 ~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~-----~~~~~~G~~~ 309 (629)
+++..++|++...|..+|....+|.++++|+++++|++. ..++||+|||++|+.++.++|.+.. +..++.|+..
T Consensus 119 ~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~ 198 (497)
T 2qma_A 119 EAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPD 198 (497)
T ss_dssp HHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCG
T ss_pred HHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhccccc
Confidence 999999999888899999999999999999999999976 7899999999999999999987543 2334456421
Q ss_pred -CCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHH
Q psy1785 310 -CPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIP 388 (629)
Q Consensus 310 -~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ 388 (629)
..+.+|+++..+|+|+.+++..+|+|.++++.||++++++||+++|+++|++..++|..|++|+++.|+|.+|.+|||+
T Consensus 199 ~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~ 278 (497)
T 2qma_A 199 YADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLD 278 (497)
T ss_dssp GGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred ccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHH
Confidence 0245889999999999999999999877899999999999999999999998777776788999999999999999999
Q ss_pred HHHHHHHHcCCeEEE--ecCccccccccccccccccccc-c-ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhh
Q psy1785 389 AIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRN-Y-VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECH 464 (629)
Q Consensus 389 ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~-~-~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~ 464 (629)
+|+++|++||+|+|| ||+++...++ ++. + +++. +||+++|+|||+++|++||++++|++..+. .+
T Consensus 279 ~I~~l~~~~~~~l~vD~a~~~~~~~~~---------~~~~~~gi~~-~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~-~~ 347 (497)
T 2qma_A 279 FIADMAVKHDMWMHVDGAYGGALILSS---------HKSRLKGVER-AHSISVDFHKLFYQTISCGALLVNDKSNFK-FL 347 (497)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGST---------TGGGGTTGGG-CSEEEEETTTTTCCCSSCEEEEESCGGGGG-GG
T ss_pred HHHHHHHHcCCEEEEehhhhHHHHhCc---------chHhhcCccc-CCEEEEcchhccCCCcceEEEEEeCHHHHH-Hh
Confidence 999999999999999 8888765432 111 1 4666 999999999999999999999999876554 34
Q ss_pred cCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC
Q psy1785 465 SASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE 544 (629)
Q Consensus 465 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~ 544 (629)
...+.|+..... ...++.+++++++|++.++++|++++.+|.+|+++++++..+++++|.+.|+++++|+++. +|.
T Consensus 348 ~~~~~yl~~~~~---~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~ 423 (497)
T 2qma_A 348 LHHADYLNREHD---ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA-EPS 423 (497)
T ss_dssp CC-----------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECS-CCS
T ss_pred cCCchhcCCccc---cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEc-CCC
Confidence 445678754321 1245566788999999999999999999999999999999999999999999999999987 788
Q ss_pred ceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 545 CTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 545 ~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.++|+|++.+... . .++++.++.++|.++|.+++.++.+.+. .++|++++|+.+|++||+++++.|++
T Consensus 424 ~~~v~f~~~~~~~-------~----~~~l~~~l~~~l~~~G~~~~~~~~~~g~-~~lRis~~~~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 424 LSTVLFRATHETA-------D----LDELNKALRLEALTRGIAVLGETIVDGK-TALKFTILNPCLTTSDFESLLSKINM 491 (497)
T ss_dssp SSEEEEEECCSSS-------C----HHHHHHHHHHHHHHHTSCBCEEEEETTE-EEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCcc-------C----HHHHHHHHHHHHHhCCCEEEEeeEECCE-EEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999865321 0 2234457888999999887776666554 58999997799999999999999999
Q ss_pred HhhcC
Q psy1785 625 LGHDL 629 (629)
Q Consensus 625 l~~~l 629 (629)
+++++
T Consensus 492 ~~~~~ 496 (497)
T 2qma_A 492 LAVEL 496 (497)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 87754
No 8
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.9e-40 Score=363.96 Aligned_cols=400 Identities=13% Similarity=0.141 Sum_probs=309.1
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHHHHHhc--ccccCCCCccccccCCCCChHHHHHHHHHHhcCCCccccccChhHHH
Q psy1785 180 PEELEKKLELGFNAGPSSHAKLIDLMKTVIQ--YSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSL 257 (629)
Q Consensus 180 ~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~--~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~~~~~~p~~~~ 257 (629)
..+++..++.++|+.|.++++|++++++++. ....+.||.|++ +... ..+.++++.++|.+...+..+|...+
T Consensus 7 ~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~~~--~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 7 KSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TWDD--ENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp --------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CCCC--HHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred hHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CCch--HHHHHHHHHHhccCCCChhhChhHHH
Confidence 3445566678899999999999999999873 334457888876 2222 45789999999988888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-----eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 258 MEEHVLAQMRTIVGFQGGD-----GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~-----g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
+|.++++|+++++|++... +++|+|||++|+.++.+++.+..++.++.|+.. ++..|+++. +|+++.++++.+
T Consensus 82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~-~~~~vi~~~-~h~~~~~~~~~~ 159 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT-DKPNLVCGP-VQICWHKFARYW 159 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCC-SCCEEEESS-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEECC-CcHHHHHHHHHc
Confidence 9999999999999998754 899999999999999998875555555566421 234677788 999999999999
Q ss_pred CCCCCCEEEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc------CCeEEE--
Q psy1785 333 GLGSDNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY------DMADSV-- 403 (629)
Q Consensus 333 Glg~~~v~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~------~~~lhV-- 403 (629)
|+ +++.||+++ ++.+|+++|+++|.+ .+.+|+++.++|.+|.++|+++|+++|+++ ++|+||
T Consensus 160 G~---~v~~v~~~~~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~ 230 (452)
T 2dgk_A 160 DV---ELREIPMRPGQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA 230 (452)
T ss_dssp TC---EEEECCCBTTBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred Cc---eEEEEecCCCCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEc
Confidence 99 999999987 799999999999864 478999999999999999999999999996 999999
Q ss_pred ecCcccc--cccccccccccccc-ccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 404 TWNPHKL--LTAPQQCSVFLTRR-NYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 404 A~gg~~l--~~~~~~~~~~l~~~-~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
||+++.. +.+ ..+ .+.++. +|++++++|||+++|.+||++++|++..+...+...+.|+...
T Consensus 231 a~~~~~~~~~~~--------~~~~~~~~~~-~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~------ 295 (452)
T 2dgk_A 231 ASGGFLAPFVAP--------DIVWDFRLPR-VKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ------ 295 (452)
T ss_dssp TTGGGTHHHHCT--------TCCCSTTSTT-EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC------
T ss_pred ccHHHHHHhhCc--------cchhhcCCCC-CcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC------
Confidence 8887653 222 111 112345 9999999999999999999999998755544444455666421
Q ss_pred ccCCCCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC---CCceEEEEEeeCCC
Q psy1785 481 KYDSGDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE---PECTNISFWYIPPS 556 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~---p~~~~v~F~~~p~~ 556 (629)
..+++++++|++ .++++|++++.+|.+|+++++++..++++++.+.|+++++++++.+. +..++|+|++.+..
T Consensus 296 ---~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 372 (452)
T 2dgk_A 296 ---IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372 (452)
T ss_dssp ---EEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC
T ss_pred ---CCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcc
Confidence 123456788888 78999999999999999999999999999999999999899998621 67899999986431
Q ss_pred CCCCCchhhHHHHHhhHHHHHHHHHHhcCcEE---EeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 557 LRGKEDQADFNELLHKVAPKIKERMMKSGSMM---ITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~---i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
... ++ ..++.++|.++|..+ .....+.+ ..++|++++ ..+|++|||++++.|+++.+
T Consensus 373 ~~~------~~------~~~l~~~L~~~Gi~v~~~~~~~~~~~-~~~lRis~~-~~~t~e~id~li~~l~~~~~ 432 (452)
T 2dgk_A 373 DPG------YT------LYDLSERLRLRGWQVPAFTLGGEATD-IVVMRIMCR-RGFEMDFAELLLEDYKASLK 432 (452)
T ss_dssp CCS------CC------HHHHHHHHHHTTCBCCEEECSTTCTT-CEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred ccc------CC------HHHHHHHHHhcCCeeeeeeCCcccCC-eEEEEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 000 00 135778888889742 21122223 358999997 66789999999999988754
No 9
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-38 Score=348.53 Aligned_cols=401 Identities=13% Similarity=0.160 Sum_probs=315.8
Q ss_pred HHHHHHhhc-cCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHHHHHHhcCCCccccccChhHHHH
Q psy1785 180 PEELEKKLE-LGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLM 258 (629)
Q Consensus 180 ~~~l~~~~~-~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~~~~~~p~~~~~ 258 (629)
+.+++..++ ..+|+.+.+.+++++.+++.+..+ ++|.+....+.+..+...+.+++..++|.+...+..+|.+..+
T Consensus 20 ~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~---gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~l 96 (502)
T 3hbx_A 20 SRYVRTSLPRFKMPENSIPKEAAYQIINDELMLD---GNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTEL 96 (502)
T ss_dssp SSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGS---CCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHH
T ss_pred chhhhhhccCCCCCCCCCCHHHHHHHHHHHhccC---CCCCceeccccCCCCCHHHHHHHHHHhccCCCChhcChhHHHH
Confidence 334444443 478999999999999999887543 5676432221112222347788889999988888899999999
Q ss_pred HHHHHHHHHHHhCCC--C---CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 259 EEHVLAQMRTIVGFQ--G---GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 259 E~~~~~~l~~l~G~~--~---~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
|.++.+|+++++|++ . ..|.+++|||++|+.++.+++.+..++.++.|.. ..+..|+++..+|+++.++++.+|
T Consensus 97 e~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~-~~~~~vi~~~~~h~s~~~~~~~~G 175 (502)
T 3hbx_A 97 QNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-VDKPNIVTGANVQVCWEKFARYFE 175 (502)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCCEEEEETTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCC-CCCcEEEEcCCchHHHHHHHHHcC
Confidence 999999999999998 2 3577899999999999999888766655666743 224478899999999999999999
Q ss_pred CCCCCEEEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc------CCeEEE--e
Q psy1785 334 LGSDNVYLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY------DMADSV--T 404 (629)
Q Consensus 334 lg~~~v~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~------~~~lhV--A 404 (629)
+ +++.||++++ +.||+++|+++|.+ .+.+|+++.++|.+|.++|+++|+++|+++ ++|+|| |
T Consensus 176 ~---~~~~v~~~~~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A 246 (502)
T 3hbx_A 176 V---ELKEVKLSEGYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAA 246 (502)
T ss_dssp C---EEEEECCBTTBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECT
T ss_pred c---eeEEEecCCCcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECC
Confidence 9 8999999876 99999999998865 478899999999999999999999999999 999999 8
Q ss_pred cCcccc--ccccccccccccccc-cccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 405 WNPHKL--LTAPQQCSVFLTRRN-YVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 405 ~gg~~l--~~~~~~~~~~l~~~~-~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
++++.. +.+ ..+. +.++. +|++++++|||+++|.+||+++++++..+...+...+.|+....
T Consensus 247 ~~~~~~p~~~~--------~~~~~~~~~~-~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~------ 311 (502)
T 3hbx_A 247 SGGFIAPFLYP--------ELEWDFRLPL-VKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ------ 311 (502)
T ss_dssp TGGGTHHHHCT--------TCCCSTTSTT-EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE------
T ss_pred ccchhhhhhCc--------ccccccCCCC-ceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC------
Confidence 876542 222 1111 13345 99999999999999999999999988777666666667775432
Q ss_pred cCCCCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC-CCceEEEEEeeCCCCCC
Q psy1785 482 YDSGDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE-PECTNISFWYIPPSLRG 559 (629)
Q Consensus 482 ~~~~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~-p~~~~v~F~~~p~~~~~ 559 (629)
..++++++|+. .++++|.+++.+|.+|+++++++..+++++|++.|+++++|+++. + +.+++|+|++.+.. +
T Consensus 312 ---~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~v~f~~~~~~--~ 385 (502)
T 3hbx_A 312 ---PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS-KDEGVPLVAFSLKDSS--C 385 (502)
T ss_dssp ---EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS-CSSSSSEEEEEESSCS--S
T ss_pred ---CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-CCCCceEEEEEecCCC--c
Confidence 12456678876 789999999999999999999999999999999999998899987 5 78999999986421 0
Q ss_pred CCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC--CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 560 KEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~--~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
. . ...+.++|.++|+++..+.... ....++|++++ ..+|++|+|.|++.|+++.+
T Consensus 386 ~------~------~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~-~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 386 H------T------EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR-EDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp C------C------HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred C------C------HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 0 0 1267888999998643332221 11258999996 99999999999999988764
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=311.84 Aligned_cols=388 Identities=15% Similarity=0.165 Sum_probs=298.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhc--ccccCCCCccccccCCCC-ChHHHHHHHHHHhcCCCccccccChhHHHHHHHHHHH
Q psy1785 189 LGFNAGPSSHAKLIDLMKTVIQ--YSVKTGHPYFVNQLFSSV-DPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQ 265 (629)
Q Consensus 189 ~~lp~~~~~~~~il~~l~~~~~--~~~~~~~p~~~g~~~s~~-~~~~~~~~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~ 265 (629)
..+|+.+.+++++++.++++.. ....+.+|+|+|+++.+. .....+.+.+..+.+.+.+.+..+|....+|.++.+|
T Consensus 36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (497)
T 3mc6_A 36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSM 115 (497)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHH
Confidence 4789899999999999998876 466678899999876554 3445566666666666788888999999999999999
Q ss_pred HHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEe
Q psy1785 266 MRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIK 343 (629)
Q Consensus 266 l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~ 343 (629)
+++++|++ ..++++++|||+++..++.+++.... ++.|. ++..|+++..+|+++.+++...|+ +++.||
T Consensus 116 la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~---~~~g~---~~~~Vi~~~~~h~~~~~~~~~~G~---~~~~v~ 186 (497)
T 3mc6_A 116 VLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYAL---HHRGI---TEPEIIAPVTAHAGFDKAAYYFGM---KLRHVE 186 (497)
T ss_dssp HHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHH---HHSCC---SSCEEEEETTSCHHHHHHHHHSCC---EEEEEC
T ss_pred HHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHH---hcCCC---CCceEEEeCCccHHHHHHHHHcCC---eEEEEe
Confidence 99999998 57899999999999999999887532 23453 344788899999999999999999 999999
Q ss_pred cCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccc-cccccccc
Q psy1785 344 TDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLL-TAPQQCSV 419 (629)
Q Consensus 344 ~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~-~~~~~~~~ 419 (629)
+++ ++.+|+++|+++|.+ .+.+|+++.+++.+|.++|+++|+++|+++|+|+|| +|+++... ......+
T Consensus 187 ~~~~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~- 259 (497)
T 3mc6_A 187 LDPTTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK- 259 (497)
T ss_dssp BCTTTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC-
T ss_pred cCcccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhccc-
Confidence 998 899999999998854 478999999999999999999999999999999999 88865432 1100000
Q ss_pred ccccccc-ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc-ch
Q psy1785 420 FLTRRNY-VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DV 497 (629)
Q Consensus 420 ~l~~~~~-~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~a 497 (629)
....+ ....|+|++++++||++++|.++|+++++++..........+.|... .++..++.++|.. ..
T Consensus 260 --~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~ 328 (497)
T 3mc6_A 260 --NLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG---------LYGSPTLAGSRPGAIV 328 (497)
T ss_dssp --SCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS---------CBCCSSSCSSCBHHHH
T ss_pred --CCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC---------CcCCcCcccCCcchhH
Confidence 00001 01235999999999999999999999999865443322222222211 1233344444443 36
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHH
Q psy1785 498 LKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPK 576 (629)
Q Consensus 498 l~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~ 576 (629)
+++|++++.++.+|+++++++..++++++++.|++ +||++++. +|..+.++|+... .. ..+
T Consensus 329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~-~~~~~~v~~~~~~--~~---------------~~~ 390 (497)
T 3mc6_A 329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMG-NPRYSVISFSSKT--LN---------------IHE 390 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECS-CCCSSEEEEECTT--TT---------------HHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec-CCCeeEEEEeCCC--CC---------------HHH
Confidence 67999999999999999999999999999999999 79999987 7888888887421 10 136
Q ss_pred HHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 577 IKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 577 i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+.+.|.++|+.+-. .. .++.+|++++ .+|++|++.+++.|+++.+
T Consensus 391 l~~~L~~~Gi~v~~---~~-~~~~~ri~~~--~~t~e~i~~~~~~L~~~l~ 435 (497)
T 3mc6_A 391 LSDRLSKKGWHFNA---LQ-KPVALHMAFT--RLSAHVVDEICDILRTTVQ 435 (497)
T ss_dssp HHHHHHTTTCBCEE---CC-SSCCEEEECC--TTTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEec---CC-CCCeEEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence 77888899964322 11 2346899996 6799999999999988754
No 11
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=2.2e-31 Score=296.72 Aligned_cols=389 Identities=18% Similarity=0.148 Sum_probs=297.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhc-ccccCCCCccccccCCC-CChHHHHHHHHHHhcCCCccccccChhHHHHHHHHHHHH
Q psy1785 189 LGFNAGPSSHAKLIDLMKTVIQ-YSVKTGHPYFVNQLFSS-VDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQM 266 (629)
Q Consensus 189 ~~lp~~~~~~~~il~~l~~~~~-~~~~~~~p~~~g~~~s~-~~~~~~~~~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l 266 (629)
..+|..+.+.+++++.+++.+. ....+.+++|+|+++.+ ......+.+.+....+.+...+..+|....+|.++.+|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l 148 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT 148 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence 4678889999999999988753 44556789999987654 445667778888888888888888999999999999999
Q ss_pred HHHhCCCC----CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEE
Q psy1785 267 RTIVGFQG----GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLI 342 (629)
Q Consensus 267 ~~l~G~~~----~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V 342 (629)
++++|++. ..|++++|||+++..++.+++.... ++.|. ++..|+++..+|.++.++++.+|+ +++.|
T Consensus 149 a~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~---~~~g~---~~d~Vi~~~~~~~~~~~~~~~~G~---~v~~v 219 (514)
T 3mad_A 149 AHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR---ATKGI---TAPEAVVPVSAHAAFDKAAQYFGI---KLVRT 219 (514)
T ss_dssp HHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHH---HHHCC---SSCEEEEETTSCTHHHHHHHHHTC---EEEEE
T ss_pred HHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhh---hhcCC---CCCeEEEeCccchHHHHHHHHcCC---eeEEe
Confidence 99999983 3459999999999999999886521 22342 445788999999999999999999 89999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccc-ccccccc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLT-APQQCSV 419 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~-~~~~~~~ 419 (629)
|+++++.+|+++|+++|.+ .+.+|+++.+++.+|.++|+++|+++|++||+|+|| +|+++.... .....+.
T Consensus 220 ~~~~~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 220 PLDADYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 293 (514)
T ss_dssp CBCTTSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred eeCCCCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCC
Confidence 9999999999999999864 477899999999999999999999999999999999 888765421 0000000
Q ss_pred cccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc-chH
Q psy1785 420 FLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVL 498 (629)
Q Consensus 420 ~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al 498 (629)
.... ....|+|++++++||++++|.++|+++++++............|... .+...++.++|.. .++
T Consensus 294 -~~~~--~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~gs~~~~~~~ 361 (514)
T 3mad_A 294 -PPFD--FRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSA 361 (514)
T ss_dssp -CCCS--TTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC---------SEEESSSCSSCCHHHHH
T ss_pred -Cccc--ccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC---------cccCCccCCCCchHHHH
Confidence 0001 01235999999999999999999999999875543321111111110 0112234455554 468
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHH
Q psy1785 499 KFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIK 578 (629)
Q Consensus 499 ~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~ 578 (629)
++|.+++.++.+|+++++++..++++++.+.|+++++++++. ++ .+.+.|.. .... ..++.
T Consensus 362 a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~-~~~~~~~~--~~~~---------------~~~l~ 422 (514)
T 3mad_A 362 TAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILG-DP-LWVIAVAS--DELN---------------IYQVM 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESS-CC-SSEEEEEC--SSSC---------------HHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeC-CC-eEEEEEeC--CCCC---------------HHHHH
Confidence 999999999999999999999999999999999999999876 44 44555543 2111 13577
Q ss_pred HHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 579 ERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 579 ~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
++|.++|..+ .... .++.+|+++++..+++++|+.+++.|+++.+
T Consensus 423 ~~L~~~Gi~v-~g~~---~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 423 EEMAGRGWRL-NGLH---RPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp HHHHTTTCBC-EEET---TTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEe-ccCC---CCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8888999754 2221 2357999998788899999999999988754
No 12
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=100.00 E-value=2e-32 Score=295.63 Aligned_cols=374 Identities=11% Similarity=0.115 Sum_probs=259.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHhccccc-C--------------C---CCccccccCCCCChHHHHHHHHHHhcCCCccccc
Q psy1785 189 LGFNAGPSSHAKLIDLMKTVIQYSVK-T--------------G---HPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYE 250 (629)
Q Consensus 189 ~~lp~~~~~~~~il~~l~~~~~~~~~-~--------------~---~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~~~~ 250 (629)
..+|+.|.++++|..++.++..-..+ + + .|+|+|++.+. +..+++++. |. .+.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence 47999999999999988775432211 1 1 26788888775 445677776 33 567
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCCCC-eEEeCCch-hhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQGGD-GIFCPGGS-MANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL 328 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~~~-g~~~~GgT-~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka 328 (629)
.+|....+|++++.|+.+++|++... +++++|+| +++.+++.++|....+ | + .|+.+..+|.|+.|+
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~-----~-----~-~viv~r~aHkSv~kA 160 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPK-----A-----K-YIIWPRIDQKSCFKS 160 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTT-----C-----C-EEEEECCCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcC-----C-----C-EEEEECCcHHHHHHH
Confidence 78999999999999999999999854 58999998 7777777777764210 1 2 345557799999999
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+.++|++...|..++.++.+.||++.|+++|++... ..+++|+++.+++..|++|||++|+++|++||+|+|| |||
T Consensus 161 l~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G 238 (450)
T 3bc8_A 161 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG 238 (450)
T ss_dssp HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred HHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc
Confidence 999999555555555577899999999999988632 2567888887777778999999999999999999999 999
Q ss_pred cccccccccccccccccccccc--CCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVI--EVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i--~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
++..+.. ....-++ +. ||+++.|+|||+++|.+++++++|+++.++.+.. .|...+
T Consensus 239 ~~~~~~~--------~l~~~a~~~~~-AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~~---------- 296 (450)
T 3bc8_A 239 LQSSKCM--------HLIQQGARVGR-IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRA---------- 296 (450)
T ss_dssp TTCHHHH--------HHHHHHHHHSC-CCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCB----------
T ss_pred hhhhhhH--------hHHHHHhcccC-CCEEEECCccCCCchhccEEEEecCHHHHHHHHH---HhhcCC----------
Confidence 9875432 1100023 44 9999999999999999999999998776655422 232110
Q ss_pred CCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCce-EEEEEeeCCCCCCC
Q psy1785 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECT-NISFWYIPPSLRGK 560 (629)
Q Consensus 485 ~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~-~v~F~~~p~~~~~~ 560 (629)
. ...++++|..++.+|.+||++.+++.++++++++++|++++ |++++. .+..+ ..++.+. .+...
T Consensus 297 ------s--~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~--~~~~~ 365 (450)
T 3bc8_A 297 ------S--ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLK--TIDGH 365 (450)
T ss_dssp ------C--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECT--TTSSS
T ss_pred ------c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeecc--ccccc
Confidence 1 12369999999999999999999999999999999999998 888775 33221 2223221 01000
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcC---cEEE-------------e-eeecC--CccceEEEeecCCCCCHHHHHHHHHH
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSG---SMMI-------------T-YQPIH--ALPNFFRLVLQNSALDHSDMDYFIDE 621 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G---~~~i-------------~-~~~~~--~~~~~lR~~~~n~~~t~edid~l~~~ 621 (629)
. ..+. . +|--.+...| .-.+ . |.... .....+-+.++ ...+++|+++|++.
T Consensus 366 ~-~~D~----t----kl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~s-ig~~~~di~~l~~~ 435 (450)
T 3bc8_A 366 H-DKAV----T----QLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAA-IGMKMQDVDLFIKR 435 (450)
T ss_dssp S-SCHH----H----HHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECC-TTCCHHHHHHHHHH
T ss_pred c-cCCC----c----eeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEec-CCCCHHHHHHHHHH
Confidence 0 0011 1 2222333333 2222 0 00000 11235666664 99999999999999
Q ss_pred HHHHhh
Q psy1785 622 IERLGH 627 (629)
Q Consensus 622 i~~l~~ 627 (629)
|+++.+
T Consensus 436 L~~~~~ 441 (450)
T 3bc8_A 436 LDKCLN 441 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998743
No 13
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2e-28 Score=261.21 Aligned_cols=389 Identities=16% Similarity=0.217 Sum_probs=292.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHHHHHHhcCCCccccccChhHHHHHHHHHHHHHHH
Q psy1785 190 GFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTI 269 (629)
Q Consensus 190 ~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l 269 (629)
.+|+.+.+.+++++.++++......+.+|.|+++..+.+.+.. .+.+..++..+...+...|....++.++.++++++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 81 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPIT--RKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSL 81 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCTHH--HHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcHHH--HHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHH
Confidence 5788899999999999998877777778899998877766542 44466666554444445677888999999999999
Q ss_pred hCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCC
Q psy1785 270 VGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGR 349 (629)
Q Consensus 270 ~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~ 349 (629)
+|.+..++++++|||+++..++.+++.... ..+..|....+...|+++..+|+++.+++...|+ +++.||.++++.
T Consensus 82 ~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~-~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~ 157 (397)
T 3f9t_A 82 LNNKDAYGHIVSGGTEANLMALRCIKNIWR-EKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDL---EYIYAPIKEDYT 157 (397)
T ss_dssp TTCTTCEEEEESCHHHHHHHHHHHHHHHHH-HHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC---EEEEECBCTTSS
T ss_pred hCCCCCCEEEecCcHHHHHHHHHHHHHHHH-hhhhhcccCCCCeEEEECCcchhHHHHHHHHcCc---eeEEEeeCCCCc
Confidence 999888889999999999999988876522 1223343334566788999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccccccccc-cccc
Q psy1785 350 MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLT-RRNY 426 (629)
Q Consensus 350 ~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~-~~~~ 426 (629)
+|+++|+++|.+. .+..|+.+.+++.+|.++|+++|.++|++||+++++ +++++.+.......+.. . ...+
T Consensus 158 ~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~-~~~~~~ 231 (397)
T 3f9t_A 158 IDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKK-GVNYKF 231 (397)
T ss_dssp BCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCT-TCCCCC
T ss_pred CCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccc-cccccc
Confidence 9999999999762 355788888999999999999999999999999999 77765432110000000 0 0011
Q ss_pred ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc-chHHHHHHHH
Q psy1785 427 VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWK 505 (629)
Q Consensus 427 ~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~w~~l~ 505 (629)
.+..++|++++++||++++|.++|+++++++..... +....+|+.... .....+++.. ..+.+|.+++
T Consensus 232 ~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~ 300 (397)
T 3f9t_A 232 DFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKRY-LDVDAPYLTETR----------QATILGTRVGFGGACTYAVLR 300 (397)
T ss_dssp SGGGTCSEEECCTTTTTCCCSSCEEEEESSGGGGGG-TCEECTTSSSSE----------ECSSCSSCCSHHHHHHHHHHH
T ss_pred cccccCCeEEEccccccCCCCCceEEEEeCHHHHHh-hccCCccccCCC----------ccccccccccchHHHHHHHHH
Confidence 111049999999999999999999999988655432 222244443321 1122344442 6788899999
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcC
Q psy1785 506 AKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSG 585 (629)
Q Consensus 506 ~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G 585 (629)
.++..++++++++..++++++.+.|++. +++++. ++..+.++|+... ..++.+.|.++|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~l~~~g 359 (397)
T 3f9t_A 301 YLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVI-EPILNIVAIEDED-------------------YKEVCKKLRDRG 359 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CCSSSEEEEECTT-------------------HHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEc-CCCccEEEEEeCC-------------------HHHHHHHHHhCC
Confidence 8899999999999999999999999998 988776 6778888776421 135677888888
Q ss_pred cEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 586 SMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 586 ~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..+ ... .. ++++|++++ ..+|++|++++++.|+++.+
T Consensus 360 i~v-~~~--~~-~~~~Ri~~~-~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 360 IYV-SVC--NC-VKALRIVVM-PHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CBC-EEC--SS-SSEEEEECC-TTCCHHHHHHHHHHHHHHC-
T ss_pred eEE-ecc--CC-CCEEEEEEc-CCCCHHHHHHHHHHHHHhhC
Confidence 643 221 11 368999996 88999999999999998754
No 14
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.97 E-value=5e-29 Score=273.67 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=253.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChH----HHHHHHHHHhcC----------CCccccccChh
Q psy1785 189 LGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPY----GLVGQWLADALN----------PSVYTYEVSPV 254 (629)
Q Consensus 189 ~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~----~~~~~~lt~~~n----------~~~~~~~~~p~ 254 (629)
..+|+.|.+++++.+.+++....... .|+++..+++-+. ++.......+.+ .|+ .+..+|.
T Consensus 56 ~~lp~~g~~~~~i~~~~~~~~~~~~~----~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 130 (456)
T 2z67_A 56 RKIPENGIDDEKIKLFLKFLSMMDTD----KDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASI 130 (456)
T ss_dssp CSCCSSCCCHHHHHHHHHHHHTTBGG----GCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc----ccccccccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcH
Confidence 47999999999999888776433211 2222222111111 111100001111 222 3455667
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCCch-hhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 255 FSLMEEHVLAQMRTIVGFQGGDGIFCPGGS-MANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT-~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
...+++++.+++++++|++.. +++|+||| .+|+.++.+++... +...|+++..+|+|+.++++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~------------~~~~vi~~~~~h~s~~~~~~~~G 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKY------------GSNVVIYPYASHKSPIKAVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHH------------CCCEEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhc------------CCCEEEEECCCcHHHHHHHHHcC
Confidence 889999999999999999866 99999999 56776777665421 12245556669999999999999
Q ss_pred CCCCCEEEEec---CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 334 LGSDNVYLIKT---DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 334 lg~~~v~~V~~---d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
+ +++.|+. +++|.+|+++|+++|.+...++ .+++|+.+.++|.+|.++|+++|+++|+++|+|+|| ||+..
T Consensus 198 ~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~ 273 (456)
T 2z67_A 198 M---NMRLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 273 (456)
T ss_dssp C---EEEEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred C---CceEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHH
Confidence 9 8888876 7789999999999994332223 577888899999999999999999999999999999 78766
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
..-..|. .... +..++|++++++|||+++|.++|++++|++.++... .+.|...
T Consensus 274 ~~g~~~~------~~~~--~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~g~--------------- 327 (456)
T 2z67_A 274 NNYYLEK------LKKA--FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYPGR--------------- 327 (456)
T ss_dssp CHHHHHH------HHHH--HTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSCSC---------------
T ss_pred HHHhhHH------HHHh--hCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCCCC---------------
Confidence 5411110 0111 111499999999999999999999999876555432 2233311
Q ss_pred CCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEEeeCCCCCCCCchh
Q psy1785 489 IQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFWYIPPSLRGKEDQA 564 (629)
Q Consensus 489 ~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~ 564 (629)
+. ..++.+|.++..+|.+|++++.++..+++++|.+.|++++ |++++. |. +.++|++..+..
T Consensus 328 ----~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~--~~-~~v~~~~~~~~~------- 393 (456)
T 2z67_A 328 ----ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD--VE-SPIASCISVNSD------- 393 (456)
T ss_dssp ----BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC--CC-CSSEEEEECSSC-------
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC--CC-CeEEEEEecccH-------
Confidence 11 1378899999999999999999999999999999999986 876553 55 888888632110
Q ss_pred hHHHHHhhHHHHHHHHHHhcCcE--EEe-------eeec-CCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 565 DFNELLHKVAPKIKERMMKSGSM--MIT-------YQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 565 ~~~~~l~~~~~~i~~~l~~~G~~--~i~-------~~~~-~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..++.++|.++|.. -+. +... ....+++|++++ ..+|++|||++++.|+++
T Consensus 394 ---------~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~-~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 394 ---------PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAA-IGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp ---------HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence 12456667777631 121 0000 001248999996 899999999999999875
No 15
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.94 E-value=1.2e-25 Score=245.36 Aligned_cols=370 Identities=13% Similarity=0.140 Sum_probs=241.2
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCC----ChHHH---H--HHHHHHhcCCCccccc
Q psy1785 180 PEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSV----DPYGL---V--GQWLADALNPSVYTYE 250 (629)
Q Consensus 180 ~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~----~~~~~---~--~~~lt~~~n~~~~~~~ 250 (629)
|+.++.. +..+| .+.++.++++.+..+...+.. ++.+++..+. .+..+ + .++++.+ +.+..+
T Consensus 31 p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~---~~~~~~ 101 (438)
T 1wyu_A 31 PKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP----AHKAFLGGGVRSHHVPPVVQALAARGEFLTAY---TPYQPE 101 (438)
T ss_dssp CGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC----CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCC---SCCSGG
T ss_pred cHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC----ccccccCCCccCCcCcHHHHHHHhcchhhhcC---CCCcch
Confidence 4444444 56788 689999999999887654321 1222222222 23222 1 2333322 344446
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH-
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA- 329 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa- 329 (629)
.++....++.++.+++++++|++..++++++|+|.++..++.+.+.. |...|+++..+|.+...+.
T Consensus 102 ~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~-------------~gd~Viv~~~~h~s~~~~~~ 168 (438)
T 1wyu_A 102 VSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET-------------GRMGVLVSQGVHPEYRAVLR 168 (438)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH-------------TCCEEEEETTSCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC-------------CCCEEEEcCccCHhHHHHHH
Confidence 78889999999999999999998777889999995443333332221 3346778999999987554
Q ss_pred ---HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEecC
Q psy1785 330 ---AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWN 406 (629)
Q Consensus 330 ---~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA~g 406 (629)
+..|+ +++.|+. ++|.+|+++ |. ..+.+|++++. +.+|.++|+++|+++|+++|+|+||...
T Consensus 169 ~~a~~~G~---~v~~v~~-~~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d 233 (438)
T 1wyu_A 169 AYLEAVGA---KLLTLPL-EGGRTPLPE----VG------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVAD 233 (438)
T ss_dssp HHHHHTTC---EEEEECC-BTTBCCCCC----CC------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHCCC---EEEEEcC-cCCccCHHH----hC------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEec
Confidence 55788 9999998 568888775 32 24678888886 9999999999999999999999997212
Q ss_pred ccc--cccccccccccccccccccCCcceEEEeCCCC-----CCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCC
Q psy1785 407 PHK--LLTAPQQCSVFLTRRNYVIEVVADSVTWNPHK-----LLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYD 479 (629)
Q Consensus 407 g~~--l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK-----~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~ 479 (629)
+.. .+.. . . +.|+|+++++.|| |+++| ++|+++++++ +.+.. +.++.......+
T Consensus 234 ~~a~g~~~~--------~-~----~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~l----~~~~~g~~~~~~ 294 (438)
T 1wyu_A 234 PLSLGVLKP--------P-G----AYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVRQL----PGRLVSETVDVE 294 (438)
T ss_dssp TTGGGTBCC--------H-H----HHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGGGC----CSCCEEEEEBTT
T ss_pred hhhccCcCC--------C-c----cCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHHhC----CCceeccccccC
Confidence 110 1111 0 1 2259999999888 67788 8999998764 33321 122211100000
Q ss_pred c--cc--C-----------CCCccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC
Q psy1785 480 T--KY--D-----------SGDKHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP 543 (629)
Q Consensus 480 ~--~~--~-----------~~~~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p 543 (629)
+ .+ + .+... -|+.. ..++..+..+..+|.+|++++.++..++++++.+.|++++|++++.+.+
T Consensus 295 ~~~~~~~~l~~~~~~~r~~~~t~~-~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 373 (438)
T 1wyu_A 295 GRRGFILTLQAREQYIRRAKAKSN-ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP 373 (438)
T ss_dssp SCEEEEECCGGGSHHHHGGGSSCC-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS
T ss_pred CCcceeeeccccccccchhcccCC-ccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC
Confidence 0 00 0 00000 01111 1233444557888899999999999999999999999999999876225
Q ss_pred CceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEE-EeeeecCCccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 544 ECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMM-ITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 544 ~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~-i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
.+..++|+.. . + ..++.++|.++|... +......+ .+++|++++ +.+|++||+++++.|
T Consensus 374 ~~~~~~~~~~-~------~-----------~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis~~-~~~t~edi~~~~~~l 433 (438)
T 1wyu_A 374 FFNEFALALP-K------D-----------PEAVRRALAERGFHGATPVPREYG-ENLALFAAT-ELHEEEDLLALREAL 433 (438)
T ss_dssp BCSEEEEECS-S------C-----------HHHHHHHHHHTTCCCCEECCTTSC-SSEEEEECC-TTCCHHHHHHHHHHH
T ss_pred eEEEEEEeCC-C------C-----------HHHHHHHHHHCCceeccccccccC-CCeEEEEec-ccCCHHHHHHHHHHH
Confidence 5666777641 0 0 135677888888643 12222112 358999997 999999999999999
Q ss_pred HHHh
Q psy1785 623 ERLG 626 (629)
Q Consensus 623 ~~l~ 626 (629)
+++.
T Consensus 434 ~~~l 437 (438)
T 1wyu_A 434 KEVL 437 (438)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
No 16
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.94 E-value=7e-25 Score=241.86 Aligned_cols=394 Identities=15% Similarity=0.155 Sum_probs=261.9
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHHHHHhcccccC-CCCccccccCCCCChHHHHHHHHHHhcCCCccccc-cChhHHH
Q psy1785 180 PEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKT-GHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYE-VSPVFSL 257 (629)
Q Consensus 180 ~~~l~~~~~~~lp~~~~~~~~il~~l~~~~~~~~~~-~~p~~~g~~~s~~~~~~~~~~~lt~~~n~~~~~~~-~~p~~~~ 257 (629)
|+.++....+.+| +.++.++++.+.++...+... .+..++|....... ..++..+...+.+-+.+..+ .++...+
T Consensus 31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~-p~v~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (474)
T 1wyu_B 31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYN-PKLHEEAARLFADLHPYQDPRTAQGALR 107 (474)
T ss_dssp CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCC-CHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccccccccCC-HHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence 3444433345788 689999999999988755432 23455552222122 23333444444444455554 5888999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
++.++.+++++++|++. ..++++|||+++..++.+++.... +.|.. ..+..|+++..+|.+..+++...|+
T Consensus 108 l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~----~~Gd~-~~r~~Vlv~~~~h~~~~~~~~~~G~--- 178 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHE----DRGEG-RTRRVVLVPDSAHGSNPATASMAGY--- 178 (474)
T ss_dssp HHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHH----HTTCT-TTCCEEEEETTSCTHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHH----hcCCc-cCCCEEEEeCCcChhhHHHHHHCCC---
Confidence 99999999999999975 356789999999998888775321 12310 1233677788999999999999999
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF-DPIPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 338 ~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i-dpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+++.||++++|.+|+++|+++|.+ .+.+|+++.. +.+|.+ +|+++|+++|+++|+++|+ ++..... ..
T Consensus 179 ~vv~v~~~~~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~-g~- 249 (474)
T 1wyu_B 179 QVREIPSGPEGEVDLEALKRELGP------HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM-GW- 249 (474)
T ss_dssp EEEEECBCTTSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT-TT-
T ss_pred EEEEecCCCCCCcCHHHHHHhhCC------CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc-cC-
Confidence 999999999999999999999853 2556777775 569999 8999999999999999999 6643332 11
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCCC-----ccEEEEEeccchhhhhhcCCCCccccCCcCCCccc----CCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQ-----QCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY----DSG 485 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~-----~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~----~~~ 485 (629)
. ... +.|+|++++++||+++.|. ++|+++++++ +.... . ..++......+...+ ..+
T Consensus 250 ~------~~~----~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~~~l-~--~~~~~~~g~~~~~~~~~~~~~~ 315 (474)
T 1wyu_B 250 A------RPG----DMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPYL-P--VPLVERGEEGFYLDFDRPKSIG 315 (474)
T ss_dssp C------CHH----HHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGGC-C--SCEEEECSSCEEEECCCTTCCC
T ss_pred C------Ccc----cCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HHHhC-C--CCeeeccCCeeEecccCcccCc
Confidence 0 111 1259999999999999996 5899999874 33321 1 011110000000000 000
Q ss_pred CccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 486 ~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
.....++......++|.+++.+|.+++++..++..++++++.+.|++. |+++..+.+.+..+.+.+ +.+..
T Consensus 316 ~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~------- 386 (474)
T 1wyu_B 316 RVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEGFR------- 386 (474)
T ss_dssp CSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STTCC-------
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCCCC-------
Confidence 000012222346677888888899999999999999999999999997 888744122333233333 21110
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
...+.++|.++|....+ .... ...+++|++++ ..+|++|+|++++.|+++.+
T Consensus 387 --------~~~l~~~L~~~Gi~~~~-~~~~~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 387 --------ALDLAKGLLELGFHPPT-VYFPLIVKEALMVEPT-ETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp --------HHHHHHHHHHTTCCCCE-ESCSTTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHCCccccc-cccccccCCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 13567788888865321 1111 12358999996 88899999999999998754
No 17
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.91 E-value=2.7e-23 Score=221.49 Aligned_cols=375 Identities=13% Similarity=0.148 Sum_probs=240.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHHHHHH-h------cCCCcccccc---Ch----h
Q psy1785 189 LGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLAD-A------LNPSVYTYEV---SP----V 254 (629)
Q Consensus 189 ~~lp~~~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~-~------~n~~~~~~~~---~p----~ 254 (629)
-.+|+.|.+++.|.-.+.++..-..+ .|.+.+.-|---.-+...++.. . ...++...+. ++ .
T Consensus 39 r~~P~~g~~d~~ie~~l~~la~mdsn----n~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll 114 (501)
T 3hl2_A 39 GKCPENGWDESTLELFLHELAIMDSN----NFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL 114 (501)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTBGG----GCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHhhccC----CCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHH
Confidence 47999999999988888776432211 1222222111111111112221 1 2222221221 11 2
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 255 FSLMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
....|..+.+|++.+ |++. ....+++|+|.+++.++.++..+..| | . ..|+.+..+|.|+.+++.++|
T Consensus 115 ~~ltn~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rp-----g----~-d~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 115 NKITNSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRP-----K----A-KYIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCT-----T----C-CEEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccC-----C----C-CEEEEecchHHHHHHHHHHcC
Confidence 334566678888887 9997 45778899997888777776654211 1 1 345669999999999999999
Q ss_pred CCCCCEEEEec---CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCc-cccccCHHHHHHHHHHcCCeEEE--ecCc
Q psy1785 334 LGSDNVYLIKT---DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTV-LGAFDPIPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 334 lg~~~v~~V~~---d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~-~G~idpl~ei~~i~~~~~~~lhV--A~gg 407 (629)
+ ..++|+. ++...+|++.|+++|++. +...+.++++..++. .+++|||++|+++|++||+|+|| |||+
T Consensus 184 l---~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGa 257 (501)
T 3hl2_A 184 F---EPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGV 257 (501)
T ss_dssp C---EEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCT
T ss_pred C---eEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchh
Confidence 9 8888876 455789999999999875 323444544444444 45779999999999999999999 9999
Q ss_pred cccccccccccccccccccccCCc-ceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCC
Q psy1785 408 HKLLTAPQQCSVFLTRRNYVIEVV-ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~i~~g-aDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 486 (629)
|..+.. ....-.++.| ||.++.++||++.+|.++++++++++++++.... .|.
T Consensus 258 h~~~~~--------~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP--------------- 311 (501)
T 3hl2_A 258 QSSKCM--------HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP--------------- 311 (501)
T ss_dssp TCHHHH--------HHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC---------------
T ss_pred hhhhhh--------hhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHH---hCC---------------
Confidence 985543 1100012335 9999999999999999999999999877765421 221
Q ss_pred ccCCCCC--CcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEEeeCCCCCCCC
Q psy1785 487 KHIQCGR--KPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 487 ~~~~~sr--~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~~~p~~~~~~~ 561 (629)
+| .+.++++|++++.+|.+||++++++++++++||+++|+++. |-+++. .| .|.+++-+.=..+....
T Consensus 312 -----Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~-~~-~n~is~a~tl~~~~~~~ 384 (501)
T 3hl2_A 312 -----GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH-TP-HNPISLAMTLKTLDEHR 384 (501)
T ss_dssp -----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCC-CT-TCSSEEEEECTTSCTTT
T ss_pred -----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcC-CC-CCceeEEEecccccccc
Confidence 12 34789999999999999999999999999999999999853 445554 22 23334433212221110
Q ss_pred chhhHHHHHhhHHHHHHHHHHhcC---cEEEeee-----------ec----CCc-cceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 562 DQADFNELLHKVAPKIKERMMKSG---SMMITYQ-----------PI----HAL-PNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~~~G---~~~i~~~-----------~~----~~~-~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
+ .... .+=..|..++ .=.|... .+ ++. ..+|=++.. ..++++|||.+++.|
T Consensus 385 -~----~~~t----~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~a-iG~~~~~v~~~~~~l 454 (501)
T 3hl2_A 385 -D----KAVT----QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASA-IGMKMQDVDLFIKRL 454 (501)
T ss_dssp -S----CHHH----HHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECC-TTCCHHHHHHHHHHH
T ss_pred -c----ccHH----HHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHH-cCCCHHHHHHHHHHH
Confidence 0 1111 2233344433 2122210 01 011 135666664 899999999999999
Q ss_pred HHHhh
Q psy1785 623 ERLGH 627 (629)
Q Consensus 623 ~~l~~ 627 (629)
+++..
T Consensus 455 ~~~~~ 459 (501)
T 3hl2_A 455 DRCLK 459 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 18
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.89 E-value=4.1e-21 Score=206.26 Aligned_cols=322 Identities=12% Similarity=0.076 Sum_probs=222.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCC-eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGD-GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~-g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~ka 328 (629)
+|....+..++.+++++++|.+... .++++|||+++..++.+.. .|...|+++..+|++ +.++
T Consensus 41 ~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------------~~gd~Vl~~~~~~~~~~~~~~ 106 (411)
T 3nnk_A 41 DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------------RPGDKVLVPVFGRFGHLLCEI 106 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------------CTTCEEEEEECSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------------CCCCEEEEecCCchHHHHHHH
Confidence 5666678889999999999998765 6788888999887777652 144567778888988 8888
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+...|+ +++.||.++++.+|+++|+++|.+. .+.+|+.+..++.+|.+.|+++|+++|+++|+++++ +++
T Consensus 107 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~ 178 (411)
T 3nnk_A 107 ARRCRA---EVHTIEVPWGEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATAS 178 (411)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT
T ss_pred HHHcCC---eEEEEecCCCCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcc
Confidence 899998 9999999999999999999999763 355788888899999999999999999999999999 544
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC---CCCccccCCcC---CCc
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA---SASYLFQKDKF---YDT 480 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~---~~~yl~~~~~~---~~~ 480 (629)
....... .. ..++|++++++||++++|.++|+++++++ ........ .+.|....... ...
T Consensus 179 ~~~~~~~---------~~----~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~gg~~~~~ 244 (411)
T 3nnk_A 179 LGGNPLE---------TD----VWGLDAVSAGMQKCLGGPSGTSPITLSAR-MEEAIRRRKCVEEGIRTDAHRDGDEEMI 244 (411)
T ss_dssp BTTBCCC---------TT----TTTCSEEECCSTTTTCCCSSEEEEEECHH-HHHHHHTTCCCCGGGCCTTCCCCSSCCC
T ss_pred cCCcccc---------hh----ccCCcEEEecCccccCCCCceEEEEECHH-HHHHHhhcccccccccccccccccCCCC
Confidence 3222111 11 22599999999999989999999998764 33322111 11111110000 000
Q ss_pred c---cCC-------CCccCC-CCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC---Cc
Q psy1785 481 K---YDS-------GDKHIQ-CGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP---EC 545 (629)
Q Consensus 481 ~---~~~-------~~~~~~-~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p---~~ 545 (629)
. ++. ...... .+.. .....++.+++.+..+|++++.++..++++++.+.|++. +++++. ++ ..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~ 322 (411)
T 3nnk_A 245 YSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFG-DLKHKMN 322 (411)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCS-CGGGBCS
T ss_pred cccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCC-Ccccccc
Confidence 0 000 000011 1112 234556667777777889999999999999999999997 888765 32 24
Q ss_pred eEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 546 TNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 546 ~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
+.++|++. .+.. ..++.+.|.++ |..+..... ....+++|+++++..+|++||+++++.|++
T Consensus 323 ~~~~~~~~-~~~~---------------~~~l~~~l~~~~gi~v~~g~~-~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 323 NVLGVVIP-QGIN---------------GDQARKLMLEDFGIEIGTSFG-PLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp SEEEEECC-TTCC---------------HHHHHHHHHHHHSEEEEECCG-GGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred cEEEEECC-CCCC---------------HHHHHHHHHHhcCeEEeCccC-CCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 56667652 2211 12566777776 764432211 112358999985477899999999999998
Q ss_pred Hhhc
Q psy1785 625 LGHD 628 (629)
Q Consensus 625 l~~~ 628 (629)
+.++
T Consensus 386 ~l~~ 389 (411)
T 3nnk_A 386 VLNY 389 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 19
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.88 E-value=1e-20 Score=200.40 Aligned_cols=307 Identities=15% Similarity=0.167 Sum_probs=215.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAF 331 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~ 331 (629)
+........++.+++++++|.+..+.++++|+|+++..++.+...... .|...|+++..+|+++..++..
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~----------~~gd~vi~~~~~~~~~~~~~~~ 107 (382)
T 4hvk_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----------RKGKHILVSAVEHMSVINPAKF 107 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHG----------GGCCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhc----------CCCCEEEECCCCcHHHHHHHHH
Confidence 344566778889999999999877899999999999888877653210 1345688889999998887766
Q ss_pred c---CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 332 E---GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 332 l---Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+ |+ +++.||+++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|+ +++ +++
T Consensus 108 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~ 177 (382)
T 4hvk_A 108 LQKQGF---EVEYIPVGKYGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATAS 177 (382)
T ss_dssp HHHTTC---EEEEECBCTTSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTT
T ss_pred HHhcCC---EEEEeccCCCCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHh
Confidence 4 77 999999999999999999998853 46788889999999999999999999999999 988 554
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 486 (629)
....... .. ..++|+++.++||++ +|.|+|+++++++..+. .++..... .
T Consensus 178 ~~~~~~~---------~~----~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~-------~~~~~~~~---------~ 227 (382)
T 4hvk_A 178 VGQIEVD---------VE----KIGADMLTISSNDIY-GPKGVGALWIRKEAKLQ-------PVILGGGQ---------E 227 (382)
T ss_dssp BTTBCCC---------HH----HHTCSEEEEESGGGT-SCTTCEEEEEETTCCCC-------CSSCSSCT---------G
T ss_pred cCCCCCC---------ch----hcCCCEEEEeHHHhc-CCCceEEEEEcCccCcC-------cccccCCC---------c
Confidence 3322111 11 124899999999975 47789999998753111 11111100 0
Q ss_pred ccCCCCC-C-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC---ceEEEEEeeCCCCCCCC
Q psy1785 487 KHIQCGR-K-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE---CTNISFWYIPPSLRGKE 561 (629)
Q Consensus 487 ~~~~~sr-~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~---~~~v~F~~~p~~~~~~~ 561 (629)
.....+. . .....+..+++. ..++++++.++..++++++.+.|+++|++++.. ++. .+.++|++... .
T Consensus 228 ~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~--- 300 (382)
T 4hvk_A 228 NGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNG-HPEKRLPNNVNVRFSYI--E--- 300 (382)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECS-CSSSBCTTEEEEEETTC--C---
T ss_pred CccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CccccCCCEEEEEECCC--C---
Confidence 0011111 1 123333344443 346889999999999999999999999998875 322 24677776311 0
Q ss_pred chhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC-------------Cc-----cceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 562 DQADFNELLHKVAPKIKERMMKSGSMMITYQPIH-------------AL-----PNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-------------~~-----~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
..++.+.|.++|.......... +. .+++|++++ ..+|++|++++++.|+
T Consensus 301 ------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~ 367 (382)
T 4hvk_A 301 ------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLP 367 (382)
T ss_dssp ------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHH
Confidence 1246677777886432111000 00 368999996 8899999999999998
Q ss_pred HHhhc
Q psy1785 624 RLGHD 628 (629)
Q Consensus 624 ~l~~~ 628 (629)
++.++
T Consensus 368 ~~~~~ 372 (382)
T 4hvk_A 368 GVIER 372 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 20
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.88 E-value=6.4e-21 Score=209.30 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH----HHHHHHHc
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS----IKKLAAFE 332 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S----i~kaa~~l 332 (629)
.+..++.+++++++|.+..+.++++|+|+++..++.+.... | .++..|+++..+|.+ +...++..
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~--------~---~~~~~Vl~~~~~~~s~~~~~~~~~~~~ 179 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKP--------T---PKRYKILLEAKAFPSDHYAIESQLQLH 179 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCC--------C---SSSCEEEEETTCCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccc--------c---CCCCEEEEcCCcCCchHHHHHHHHHHc
Confidence 44466788999999998888999999999877666654321 1 234567888899987 44467778
Q ss_pred CCCCCC--EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 333 GLGSDN--VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 333 Glg~~~--v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
|+.... +..+|.++++.+|+++|+++|++.. ..+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.+
T Consensus 180 G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g 256 (465)
T 3e9k_A 180 GLNIEESMRMIKPREGEETLRIEDILEVIEKEG---DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVG 256 (465)
T ss_dssp TCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG---GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CCcceeeeEEEecCCCCCccCHHHHHHHHHhcC---CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcC
Confidence 872111 3456777889999999999997531 2467888899999999999999999999999999999 55544
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCC-CCCCccEEEEEeccchhhhhhcCCCCccccCC-cCC----Cccc
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLL-TAPQQCSVFLTRHQSVLTECHSASASYLFQKD-KFY----DTKY 482 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l-~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~-~~~----~~~~ 482 (629)
..... .. +.++|++++++||++ ++|.++|+++++++ ...........+..... ..+ ...+
T Consensus 257 ~~~~~---------~~----~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 322 (465)
T 3e9k_A 257 NVELY---------LH----DWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELSTRFKMDNKLQL 322 (465)
T ss_dssp TSCCC---------HH----HHTCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTCCSCCCB
T ss_pred CcCCc---------hh----hcCCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCCcccccCCCcCc
Confidence 33221 11 125999999999999 47888999998764 33222111111111100 000 0011
Q ss_pred CCCCccCCCCCCc--chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----------CCcEEEccCC----Cce
Q psy1785 483 DSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----------PGFKLVLDEP----ECT 546 (629)
Q Consensus 483 ~~~~~~~~~sr~~--~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----------~g~~l~~~~p----~~~ 546 (629)
..+...++.+... ..+.++.++..+...|++++.++..++++++.+.|+++ +|++++. +. ..+
T Consensus 323 ~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~-p~~~~~~g~ 401 (465)
T 3e9k_A 323 IPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIIT-PSHVEERGC 401 (465)
T ss_dssp CSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECS-CSSGGGBCS
T ss_pred CCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeC-CCCHhhccc
Confidence 1111223344442 46777888888877789999999999999999999985 7999876 32 256
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.++|++. .. . .++.+.|.++|.+. .. .+ ++++|+++++..+|++||+.+++.|+++.
T Consensus 402 ~~~~~~~-~~--~---------------~~l~~~L~~~Gi~v-~~---~~-~~~iRis~~~~~~t~edi~~~~~~l~~~l 458 (465)
T 3e9k_A 402 QLTITFS-VP--N---------------KDVFQELEKRGVVC-DK---RN-PNGIRVAPVPLYNSFHDVYKFTNLLTSIL 458 (465)
T ss_dssp CEEEEEC-CT--T---------------CCHHHHHHTTTEEC-EE---ET-TTEEEEBCCTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEec-CC--H---------------HHHHHHHHHCCEEE-ec---CC-CCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 7788764 11 0 14677888888543 31 22 36899998669999999999999999876
Q ss_pred hc
Q psy1785 627 HD 628 (629)
Q Consensus 627 ~~ 628 (629)
++
T Consensus 459 ~~ 460 (465)
T 3e9k_A 459 DS 460 (465)
T ss_dssp TC
T ss_pred Hh
Confidence 53
No 21
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.87 E-value=1.6e-20 Score=201.93 Aligned_cols=322 Identities=13% Similarity=0.139 Sum_probs=218.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeE-EeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGI-FCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~-~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~ka 328 (629)
.+....+..++.+++++++|.+....+ +++|||+++..++.+.. .|...|++...+|++ +.++
T Consensus 39 ~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~--------------~~gd~Vl~~~~~~~~~~~~~~ 104 (416)
T 3isl_A 39 DPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI--------------EPEDDVLIPIYGRFGYLLTEI 104 (416)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC--------------CTTCEEEEEESSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc--------------CCCCEEEEecCCcccHHHHHH
Confidence 455677788999999999998876555 78888898877766541 244456777788888 7788
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+...|+ +++.||.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 105 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 176 (416)
T 3isl_A 105 AERYGA---NVHMLECEWGTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVAT 176 (416)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HHhcCC---eeEEEecCCCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 899998 9999999999999999999999742 356788888999999999999999999999999999 554
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC---C--------CccccCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS---A--------SYLFQKD 475 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~---~--------~yl~~~~ 475 (629)
....... .. ..++|++++++||++++|.++|+++++++ ......... . .+.....
T Consensus 177 ~~~~~~~---------~~----~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~ 242 (416)
T 3isl_A 177 IGGCEVK---------VD----EWKIDAAIGGTQKCLSVPSGMAPITYNER-VADVIAARKKVERGIATQADRAALSGNR 242 (416)
T ss_dssp TTTSCCC---------TT----TTTCSEEECCSSSTTCCCSSEEEEEECHH-HHHHHHTC------------------CC
T ss_pred ccCCCcc---------hh----hcCCCEEEecCccccCCCCCeEEEEECHH-HHHHhhccccccccccccccchhccCCC
Confidence 3322111 11 22599999999999999999999998774 333221100 0 0000000
Q ss_pred cCCCcccC-------CCCccCCC-CCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC--
Q psy1785 476 KFYDTKYD-------SGDKHIQC-GRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE-- 544 (629)
Q Consensus 476 ~~~~~~~~-------~~~~~~~~-sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~-- 544 (629)
.......+ .....+.. +.. .....++.+++.+...|++++.++..++++++.+.|++. |+++.. ++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~ 320 (416)
T 3isl_A 243 PITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFG-DDSCK 320 (416)
T ss_dssp CCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCS-CGGGB
T ss_pred CCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEecc-Ccccc
Confidence 00000000 00111111 212 234556677777777789999999999999999999995 888765 322
Q ss_pred -ceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 545 -CTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 545 -~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
...++|++. .+.. ..++.+.|.++ |.. +.........+++|++++...+++++|+++++.|
T Consensus 321 ~~~~~~~~~~-~~~~---------------~~~l~~~L~~~~gi~-v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l 383 (416)
T 3isl_A 321 MPVVTCVEIP-GGID---------------GESVRDMLLAQFGIE-IASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGL 383 (416)
T ss_dssp CTTEEEEECC-TTCC---------------HHHHHHHHHHHHCEE-CBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred CCcEEEEeCC-CCCC---------------HHHHHHHHHHhCCEE-EecCCCCCCCCEEEEecccCCCcHHHHHHHHHHH
Confidence 356677653 1111 13567778776 754 3321111223689999963445555599999999
Q ss_pred HHHhhc
Q psy1785 623 ERLGHD 628 (629)
Q Consensus 623 ~~l~~~ 628 (629)
+++.++
T Consensus 384 ~~~~~~ 389 (416)
T 3isl_A 384 EAVLLR 389 (416)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 22
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.87 E-value=1.2e-19 Score=193.73 Aligned_cols=321 Identities=13% Similarity=0.094 Sum_probs=217.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH--HHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI--KKLA 329 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si--~kaa 329 (629)
++.......++.+++++++|.+....++|+|||+++..++.+... |...|+++..+|++. ...+
T Consensus 37 ~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~ 102 (392)
T 2z9v_A 37 DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLIS--------------PDDVVLNLASGVYGKGFGYWA 102 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCC--------------TTCCEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcC--------------CCCEEEEecCCcccHHHHHHH
Confidence 455566678889999999999877899999999999888776521 333466777788775 3445
Q ss_pred HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCc
Q psy1785 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg 407 (629)
...|. +++.+|++++|.+|+++|+++|++ ...+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.
T Consensus 103 ~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~ 175 (392)
T 2z9v_A 103 KRYSP---HLLEIEVPYNEAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSF 175 (392)
T ss_dssp HHHCS---CEEEEECCTTSCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTB
T ss_pred HHcCC---ceEEeeCCCCCCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEccccc
Confidence 56788 999999999899999999999864 12355788888999999999999999999999999999 5553
Q ss_pred cccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC--CC-ccccCCcCCCcccCC
Q psy1785 408 HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS--AS-YLFQKDKFYDTKYDS 484 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~--~~-yl~~~~~~~~~~~~~ 484 (629)
..... ... ..++|++++++||++++|.|+|+++++++ ......... +. +.......... +..
T Consensus 176 g~~~~---------~~~----~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~-~~~ 240 (392)
T 2z9v_A 176 GGMKT---------HPE----DCKADIYVTGPNKCLGAPPGLTMMGVSER-AWAKMKANPLAPRASMLSIVDWENA-WSR 240 (392)
T ss_dssp TTBSC---------CGG----GGTCSEEEECSSSTTCCCSCCEEEEECHH-HHHHHHTCTTSCCSSTTCSGGGTTT-TST
T ss_pred CCccc---------ccc----cccceEEEecCcccccCCCceeEEEECHH-HHHHhhhccCCCCceeccHHHHHhh-hcc
Confidence 22211 111 12489999999999999999999998763 433321111 10 11110000000 000
Q ss_pred CCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC----CceEEEEEeeCCCCCC
Q psy1785 485 GDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP----ECTNISFWYIPPSLRG 559 (629)
Q Consensus 485 ~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p----~~~~v~F~~~p~~~~~ 559 (629)
.....++... ..+.++.+++.+...|++++.++..++++++.+.|+++ |+++.. ++ ..+.++|++. .+..
T Consensus 241 -~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~-~~~~- 315 (392)
T 2z9v_A 241 -DKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWA-ASDSIASPTTTAVRTP-DGVD- 315 (392)
T ss_dssp -TSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-SSGGGBCTTEEEEECC-TTCC-
T ss_pred -cCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeecc-CCccccCCceEEEECC-CCCC-
Confidence 0001112121 23445566766666678899999999999999999998 887654 23 2455677652 1111
Q ss_pred CCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 560 KEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++ |..+....... ..+++|+++..+.+|++||+++++.|+++.++
T Consensus 316 --------------~~~l~~~L~~~~gi~v~~g~~~~-~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 316 --------------EKALRQAARARYGVVFSSGRGET-LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp --------------HHHHHHHHHHHHCEECEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHhcCCEEEecCCCCC-CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 12567778877 86543322111 23589999643489999999999999887654
No 23
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.86 E-value=5.5e-20 Score=195.61 Aligned_cols=320 Identities=15% Similarity=0.166 Sum_probs=220.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCC-CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQ-GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~-~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~ka 328 (629)
++....+..++.+++++++|.+ ....++++|||+++..++.+... |...|++...+|++ +..+
T Consensus 48 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~ 113 (386)
T 2dr1_A 48 SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVS--------------KGGKVLVTIIGAFGKRYKEV 113 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSC--------------TTCEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhc--------------CCCeEEEEcCCchhHHHHHH
Confidence 3445677888999999999997 44588999999999888776421 34457777788888 8888
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+...|. +++.++.++++.+|+++|+++|++ ...+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 114 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 186 (386)
T 2dr1_A 114 VESNGR---KAVVLEYEPGKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSA 186 (386)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHhCC---ceEEEecCCCCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEcccc
Confidence 899998 999999999899999999999864 12356777788889999999999999999999999999 655
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC-CCCccccCCcCCCcccCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA-SASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~ 485 (629)
....... .. +.++|+++.++||++++|.++|+++++++ +....... ...+...... +..... +
T Consensus 187 ~~~~~~~---------~~----~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 250 (386)
T 2dr1_A 187 MGGADIK---------FD----KWGLDVVFSSSQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWYFDIPL-YVKYLK-E 250 (386)
T ss_dssp BTTBCCC---------TT----TTTCSEEEEETTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCSTTCHHH-HHHHHH-H
T ss_pred ccCcccc---------cc----ccCCcEEEEeccccccCCCceEEEEECHH-HHHHHhcCCCCceEEeHHH-HHHhhc-c
Confidence 4332111 11 12489999999999999988999999763 44332110 0011100000 000000 0
Q ss_pred CccCCCCCC-cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC---CceEEEEEeeCCCCCCC
Q psy1785 486 DKHIQCGRK-PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP---ECTNISFWYIPPSLRGK 560 (629)
Q Consensus 486 ~~~~~~sr~-~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p---~~~~v~F~~~p~~~~~~ 560 (629)
......+.. .....++.+++.+... |++++.++..++++++.+.|+++ |+++.. ++ ..+.++|++. .+..
T Consensus 251 ~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~-~~~~-- 325 (386)
T 2dr1_A 251 KESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILA-EPGHESPTITAVLTP-PGIK-- 325 (386)
T ss_dssp HSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CTTCBCSSEEEEECC-TTCC--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCc-CccccCCceEEEEcC-CCCC--
Confidence 000011212 2344556667666555 78999999999999999999998 888664 22 2456667653 1110
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|.++|.......... ..+++|++++ ..+|++|++++++.|+++.++
T Consensus 326 -------------~~~~~~~l~~~gi~v~~~~~~~-~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 326 -------------GDEVYEAMRKRGFELAKGYGSV-KEKTFRIGHM-GYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp -------------HHHHHHHHHHTTEECEECCGGG-TTTEEEEECC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCeEEecCcccc-CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 1356778888885433222111 2358999996 789999999999999887543
No 24
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.86 E-value=8e-20 Score=194.04 Aligned_cols=307 Identities=14% Similarity=0.154 Sum_probs=212.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAF 331 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~ 331 (629)
++.......++.+++++++|.+...+++++|||+++..++.+.+... .+ |...|+++..+|+++..++..
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~----~~------~gd~Vl~~~~~~~~~~~~~~~ 107 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN----AR------KGKHILVSAVEHMSVINPAKF 107 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHH----GG------GCCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhc----cC------CCCEEEECCCcchHHHHHHHH
Confidence 34456677888999999999976689999999999998888776321 01 234678888999999887765
Q ss_pred ---cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 332 ---EGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 332 ---lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
.|+ +++.||+++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|++ ++ +++
T Consensus 108 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~ 177 (382)
T 4eb5_A 108 LQKQGF---EVEYIPVGKYGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATAS 177 (382)
T ss_dssp HTTTTC---EEEEECBCTTSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTT
T ss_pred HHhCCc---EEEEeccCCCCccCHHHHHHHhcC------CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchh
Confidence 466 899999999999999999988853 366788889999999999999999999999999 88 555
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 486 (629)
..... . .... .++|+++.++||++ +|.|+|+++++++..+. .++..... .
T Consensus 178 ~g~~~---~------~~~~----~~~di~~~s~sK~~-g~~g~G~~~~~~~~~l~-------~~~~~~~~---------~ 227 (382)
T 4eb5_A 178 VGQIE---V------DVEK----IGADMLTISSNDIY-GPKGVGALWIRKEAKLQ-------PVILGGGQ---------E 227 (382)
T ss_dssp BTTBC---C------CHHH----HTCSEEEEETGGGT-CCSSCEEEEEETTCCCC-------CSSCSSCT---------G
T ss_pred cCCcc---c------Cccc----cCCCEEEeehHHhc-CCCceEEEEEccccccC-------ceecCCCc---------c
Confidence 22111 1 1111 14899999999985 47789999988752111 11111000 0
Q ss_pred ccCC-CCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC---CceEEEEEeeCCCCCCCC
Q psy1785 487 KHIQ-CGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP---ECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 487 ~~~~-~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p---~~~~v~F~~~p~~~~~~~ 561 (629)
.... ++... ....++.+++.+ .++++++.++..++++++.+.|+++|++++.. ++ ..+.++|++. +..
T Consensus 228 ~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~--- 300 (382)
T 4eb5_A 228 NGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNG-HPEKRLPNNVNVRFS--YIE--- 300 (382)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECS-CSSSBCTTEEEEEET--TSC---
T ss_pred ccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeC-CcccCCCCEEEEEeC--CcC---
Confidence 0011 11111 233444555543 35788999999999999999999988998765 32 1446777753 111
Q ss_pred chhhHHHHHhhHHHHHHHHHHhcCcEEEeeeec-C------------C-----ccceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 562 DQADFNELLHKVAPKIKERMMKSGSMMITYQPI-H------------A-----LPNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~-~------------~-----~~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
..++.+.|.+.|......... . + ..+++|+++. ..+|++|++++++.|+
T Consensus 301 ------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 301 ------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLP 367 (382)
T ss_dssp ------------HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHH
Confidence 124566777778643221100 0 0 1358999985 8899999999999998
Q ss_pred HHhhc
Q psy1785 624 RLGHD 628 (629)
Q Consensus 624 ~l~~~ 628 (629)
++.++
T Consensus 368 ~~~~~ 372 (382)
T 4eb5_A 368 GVIER 372 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 25
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.86 E-value=1.3e-20 Score=200.07 Aligned_cols=317 Identities=15% Similarity=0.138 Sum_probs=218.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCC--CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQG--GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKK 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~--~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~k 327 (629)
++....+..++.+++++++|.+. .+.++++|||+++. ++.... .|...|++...+|++ +..
T Consensus 30 ~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~--------------~~gd~vi~~~~~~~~~~~~~ 94 (384)
T 3zrp_A 30 SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL--------------KPNDKILVVSNGVFGDRWEQ 94 (384)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC--------------CTTCEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc--------------CCCCEEEEecCCcchHHHHH
Confidence 45567778889999999999987 67899999999988 664321 244456777778866 556
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
.+...|. +++.||+++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|++||+++++ ++
T Consensus 95 ~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~ 166 (384)
T 3zrp_A 95 IFKRYPV---NVKVLRPSPGDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVS 166 (384)
T ss_dssp HHTTSSC---EEEEECCSTTCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTT
T ss_pred HHHHcCC---cEEEecCCCCCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcc
Confidence 6677788 9999999999999999999999761 366788888999999999999999999999999999 55
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhh-hc-CCCCccccCCcCCC--cc
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC-HS-ASASYLFQKDKFYD--TK 481 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~-~~-~~~~yl~~~~~~~~--~~ 481 (629)
+....... .. ..++|++++++||++++|.++|+++++++ .+... .. ....|......... ..
T Consensus 167 ~~~~~~~~---------~~----~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (384)
T 3zrp_A 167 SVGAEEVK---------AE----EWNVDVYLTASQKALGSAAGLGLLLLSPK-ALSILDSQNSIAGYYLDLRNWLPVMRG 232 (384)
T ss_dssp TTTTSCCC---------TT----TTTCSEEEEETTSTTCCCSSEEEEEECHH-HHHHHHHCCCSCCSTTCHHHHHHHHHH
T ss_pred cccCcccc---------cc----ccCCCEEEecCcccccCCCceEEEEECHH-HHHHhcCCCCCCcccccHHHHHHHHHh
Confidence 43322111 11 12589999999999998999999998764 33322 00 00111100000000 00
Q ss_pred cCCCCccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC----CceEEEEEeeCCC
Q psy1785 482 YDSGDKHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP----ECTNISFWYIPPS 556 (629)
Q Consensus 482 ~~~~~~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p----~~~~v~F~~~p~~ 556 (629)
+..+.....++.. .....++.+++.+...|++++.++..++++++.+.|+++ |++++. ++ ....++|++..
T Consensus 233 ~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~-- 308 (384)
T 3zrp_A 233 AEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVA-RRPESYSNTVTGVILKV-- 308 (384)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSC-SSGGGBCSSEEEEECSS--
T ss_pred hcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEcc-CcccccCccEEEEECCC--
Confidence 0000000011222 234556667777777789999999999999999999998 888765 32 24555676532
Q ss_pred CCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 557 LRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.. ..++.+.|.++|..+.... .... +++|+++. ..+|++||+++++.|+++.+
T Consensus 309 ~~---------------~~~~~~~l~~~gi~v~~g~-~~~~-~~iRi~~~-~~~~~e~i~~~~~~l~~~l~ 361 (384)
T 3zrp_A 309 AD---------------PQKVLAGTVNEGVEFAPGV-HPAF-KYFRIGHM-GWVTPNDAIIAISVIERTLR 361 (384)
T ss_dssp SC---------------HHHHHHHHHTTTCCCEECC-CTTC-CEEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred CC---------------HHHHHHHHHHCCEEEecCC-CCCc-CEEEEecc-ccCCHHHHHHHHHHHHHHHH
Confidence 10 1356778888886433211 1111 58999996 77999999999999988764
No 26
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.86 E-value=1.6e-19 Score=195.00 Aligned_cols=306 Identities=13% Similarity=0.169 Sum_probs=212.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
........++.+++++++|.+....++++|||+++..++.+.+.... .|...|+++..+|.++..++..+
T Consensus 64 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~----------~~gd~Vl~~~~~~~~~~~~~~~~ 133 (423)
T 3lvm_A 64 WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQ----------KKGKHIITSKTEHKAVLDTCRQL 133 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHT----------TTCCEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhc----------cCCCEEEECCccchHHHHHHHHH
Confidence 34456667889999999999877899999999999999887765321 13456888999999998887655
Q ss_pred ---CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCc
Q psy1785 333 ---GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 333 ---Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg 407 (629)
|+ +++.+|.++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|+++|+++|+++++ +++.
T Consensus 134 ~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~ 204 (423)
T 3lvm_A 134 EREGF---EVTYLAPQRNGIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSV 204 (423)
T ss_dssp HHTTC---EEEEECCCTTSCCCHHHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred HHcCC---EEEEeccCCCCccCHHHHHHhcCC------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhc
Confidence 87 999999999999999999998864 467788888899999999999999999999999999 6655
Q ss_pred cccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCc
Q psy1785 408 HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDK 487 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~ 487 (629)
..+... .. ..++|++++++||++ +|.++|+++++++. .... ..++..... ..
T Consensus 205 ~~~~~~---------~~----~~~~di~~~s~sK~~-g~~g~G~~~~~~~~-~~~~----~~~~~~~~~---------~~ 256 (423)
T 3lvm_A 205 GKLPID---------LS----QLKVDLMSFSGHKIY-GPKGIGALYVRRKP-RVRI----EAQMHGGGH---------ER 256 (423)
T ss_dssp TTSCCC---------TT----TSCCSEEEEESTTTT-SCSSCEEEEECBTT-BCCC----CCSSCSSCT---------TT
T ss_pred CCCCcC---------hh----hcCCCEEEechHHhc-CCCCeEEEEEeccc-cCCC----CccccCCcc---------cc
Confidence 433111 11 225899999999965 57789999987642 2211 111111000 00
Q ss_pred cCCCC-CC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC---ceEEEEEeeCCCCCCCCc
Q psy1785 488 HIQCG-RK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE---CTNISFWYIPPSLRGKED 562 (629)
Q Consensus 488 ~~~~s-r~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~---~~~v~F~~~p~~~~~~~~ 562 (629)
....+ .. .....+..+++.+. +.++++.++..++++++.+.|+++++++++. ++. .+.++|++.. ..
T Consensus 257 ~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~---- 328 (423)
T 3lvm_A 257 GMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNG-DLEHGAPNILNVSFNY--VE---- 328 (423)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEES-CSTTBCTTEEEEEETT--SC----
T ss_pred cccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CccccCCCeEEEEeCC--CC----
Confidence 01111 11 12333444454432 3378899999999999999999999999886 332 3567787621 11
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEeeeec--------------CC-----ccceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITYQPI--------------HA-----LPNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~--------------~~-----~~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
. ..+.+.|.+ +.+..... -+ ..+++|+++. ..+|++||+++++.|+
T Consensus 329 ~-----------~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~ 393 (423)
T 3lvm_A 329 G-----------ESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVR 393 (423)
T ss_dssp H-----------HHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHH
Confidence 1 134444444 22221100 00 0258999996 8899999999999998
Q ss_pred HHhhc
Q psy1785 624 RLGHD 628 (629)
Q Consensus 624 ~l~~~ 628 (629)
++.++
T Consensus 394 ~~~~~ 398 (423)
T 3lvm_A 394 KSIGR 398 (423)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 27
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.86 E-value=2.6e-20 Score=196.19 Aligned_cols=310 Identities=11% Similarity=0.047 Sum_probs=213.5
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHH
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKK 327 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~k 327 (629)
.+|....+..++.+++++++|.+. .+.++++|+|+++..++.+.. .| .+++....||+ +..
T Consensus 37 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~--------------~~--~~i~~~~~~~~~~~~~ 100 (362)
T 3ffr_A 37 RSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV--------------EK--KSFHCVNGSFSKRFYE 100 (362)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--------------SS--EEEEEECSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--------------CC--cEEEEcCcHHHHHHHH
Confidence 567777888999999999999964 568899999999877766432 14 33444455665 445
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc-CCeEEE--e
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY-DMADSV--T 404 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~-~~~lhV--A 404 (629)
.+...|+ +++.|+.++++.+|+++|+ + ...+.+|+.+..+|.+|.+.|+++|.++|+++ |+++++ +
T Consensus 101 ~~~~~g~---~~~~v~~~~~~~~d~~~l~--~------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a 169 (362)
T 3ffr_A 101 FAGELGR---EAYKEEAAFGKGFYPADIT--V------PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAV 169 (362)
T ss_dssp HHHHTTC---EEEEEECCTTCCCCGGGCC--C------CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECT
T ss_pred HHHHhCC---CeEEEecCCCCCCCHHHHh--c------cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecc
Confidence 6677888 9999999988999999988 2 22466788888899999999999999999999 999999 5
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC-----CCccccCCcCCC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS-----ASYLFQKDKFYD 479 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~-----~~yl~~~~~~~~ 479 (629)
++...... .+.. +|+++.++||++++|.|+|+++++++ .+....... ..|.........
T Consensus 170 ~~~~~~~~--------------~~~~-~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~ 233 (362)
T 3ffr_A 170 SSLPYPKF--------------DWTK-IDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLAKRKSIGTYHTIPSMLE 233 (362)
T ss_dssp TTTTSSCC--------------CTTS-CSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHHHHH
T ss_pred cccCCccc--------------ChhH-CcEEEEecccccCCCCceEEEEECHH-HHHHhhhccccCCCCcccccHHHHHH
Confidence 44322111 1334 89999999999998999999888764 333221110 111110000000
Q ss_pred cccCCCCccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC---CCceEEEEEeeCC
Q psy1785 480 TKYDSGDKHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE---PECTNISFWYIPP 555 (629)
Q Consensus 480 ~~~~~~~~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~---p~~~~v~F~~~p~ 555 (629)
....+ ....+.. .....++.+++.+..+|++++.++..++++++.+.|+++||++++.+. ....+++|.+..
T Consensus 234 -~~~~~--~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~- 309 (362)
T 3ffr_A 234 -KARVN--QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM- 309 (362)
T ss_dssp -HHTTT--CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-
T ss_pred -HhhcC--CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-
Confidence 00000 0011112 234556667776667789999999999999999999999999986411 124566676532
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
. ..++.++|.++|..........+ .+++|++++ ..++++||+++++.|+++.
T Consensus 310 --~---------------~~~~~~~l~~~gi~~~~g~~~~~-~~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 310 --L---------------PGEINKILEPFDMAVGAGYGSKK-ETQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp --C---------------HHHHHHHHGGGTEEEEECSGGGT-TTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred --C---------------HHHHHHHHHHCCeEEecCccccC-CCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 0 13677888888865433221112 358999996 7889999999999999874
No 28
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.86 E-value=3.3e-19 Score=191.74 Aligned_cols=320 Identities=13% Similarity=0.093 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHhCC-CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH----HHHHHH
Q psy1785 256 SLMEEHVLAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS----IKKLAA 330 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~-~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S----i~kaa~ 330 (629)
.....++.+++++++|. +....++++|||+++..++.+.++... .|...|+++..+|.+ +...++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~Vl~~~~~~~~~~~~~~~~~~ 140 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNL----------KAGDEIITTVMEHHSNLVPWQMVAA 140 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHC----------CTTCEEEEETTCCGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhccc----------CCCCEEEECcchhHHHHHHHHHHHH
Confidence 45567788899999998 556899999999999988887642211 134467778888887 567778
Q ss_pred HcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 331 FEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 331 ~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
..|+ +++.||+++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.+
T Consensus 141 ~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~ 211 (420)
T 1t3i_A 141 KTGA---VLKFVQLDEQESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 211 (420)
T ss_dssp HHCC---EEEEECBCTTSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred hcCc---EEEEeccCCCCCcCHHHHHHhhCC------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccC
Confidence 8898 999999998899999999998853 366788889999999999999999999999999999 55543
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC-cCCCcccCCCCc
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD-KFYDTKYDSGDK 487 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~-~~~~~~~~~~~~ 487 (629)
.... ... +.++|++++++||.+ +|.|+|++++++ ++................ ......+.....
T Consensus 212 ~~~~---------~~~----~~~~di~~~s~sK~~-~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 1t3i_A 212 HYPL---------DVQ----LIDCDWLVASGHKMC-APTGIGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPH 276 (420)
T ss_dssp TSCC---------CHH----HHTCSEEEEEGGGTT-SCTTCEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTG
T ss_pred CccC---------chh----hcCCCEEEEehhhhc-CCCceEEEEEch-HHHhhcCceecCCCccccccccccCCCCchh
Confidence 2211 111 114899999999955 577789888865 344332111100000000 000000000111
Q ss_pred cCCCCC-Cc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-----CceEEEEEeeCCCCCCC
Q psy1785 488 HIQCGR-KP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-----ECTNISFWYIPPSLRGK 560 (629)
Q Consensus 488 ~~~~sr-~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-----~~~~v~F~~~p~~~~~~ 560 (629)
.++.+. .. .++.++.+++.+...+++++.++..++++++.+.|+++++++++. ++ ..+.++|.+ |. ..
T Consensus 277 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~-~~-- 351 (420)
T 1t3i_A 277 KFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYG-PNPKHGDRAALASFNV-AG-LH-- 351 (420)
T ss_dssp GGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEES-CCGGGSCBCSEEEEEE-TT-BC--
T ss_pred hccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeC-CCccccccCCEEEEEE-CC-CC--
Confidence 122222 22 233444466666666889999999999999999999999999876 33 356677764 21 10
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeee-------ecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQ-------PIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~-------~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++|..+.... ...+..+++|+++. ..++++|++.+++.|+++.+.
T Consensus 352 -------------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 352 -------------ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp -------------HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHH
Confidence 1246677888885432211 00121358999996 889999999999999988654
No 29
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.85 E-value=1.5e-19 Score=192.61 Aligned_cols=321 Identities=11% Similarity=0.089 Sum_probs=215.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcch--HHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHY--SIKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~--Si~ka 328 (629)
.+.......++.+++++++|.+.. ..++++|||+++..++.+... |...|++....|+ .+..+
T Consensus 51 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~ 116 (393)
T 3kgw_A 51 QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE--------------PGDSFLTGTNGIWGMRAAEI 116 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC--------------CCCEEEEEeCCchhHHHHHH
Confidence 455567778889999999999865 478999999999877775521 3334555566666 34678
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+...|. +++.+|.++++.+|+++|+++|.+. .+.+|+++...+.+|.+.|+++|.++|++||+++++ +++
T Consensus 117 ~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~ 188 (393)
T 3kgw_A 117 ADRIGA---RVHQMIKKPGEHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVAS 188 (393)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT
T ss_pred HHHcCC---ceEEEeCCCCCCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCcc
Confidence 888898 9999999999999999999999762 255778888899999999999999999999999999 554
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC----CCccccCCcCCCccc
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS----ASYLFQKDKFYDTKY 482 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~----~~yl~~~~~~~~~~~ 482 (629)
....... .. ..++|++++++||++++|.++|+++++++ ......... .-|+..... ...+
T Consensus 189 ~g~~~~~---------~~----~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~ 252 (393)
T 3kgw_A 189 LGGVPIY---------MD----QQGIDIMYSSSQKVLNAPPGISLISFNDK-AKYKVYSRKTKPVSFYTDITYL--AKLW 252 (393)
T ss_dssp TTTSCCC---------TT----TTTCCEEEEESSSTTCCCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHH--HHHT
T ss_pred ccCcccc---------hh----hcCCCEEEecCcccccCCCceeEEEECHH-HHHHHhccCCCCCceeecHHHH--HHhh
Confidence 2221111 11 12489999999999988999999998764 333321111 111100000 0000
Q ss_pred CCCC-ccCC-CCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC--CCc-eEEEEEeeCCC
Q psy1785 483 DSGD-KHIQ-CGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE--PEC-TNISFWYIPPS 556 (629)
Q Consensus 483 ~~~~-~~~~-~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~--p~~-~~v~F~~~p~~ 556 (629)
.... .... .+.. .....+..+++.+..++++++.++..++++++.+.|++. |++++.++ ... ..++|++. .+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~ 330 (393)
T 3kgw_A 253 GCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVP-AG 330 (393)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECC-TT
T ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCC-CC
Confidence 0000 0001 1111 234455566676667789999999999999999999998 88876311 122 34456542 21
Q ss_pred CCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 557 LRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.. ..++.++|.++ |.++ .........+++|++++...+|++|++++++.|+++.++
T Consensus 331 ~~---------------~~~~~~~l~~~~gi~v-~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 331 YN---------------WRDIVSYVLDHFSIEI-SGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp BC---------------HHHHHHHHHHHHCEEC-BCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CC---------------HHHHHHHHHHhCCEEE-eCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 11 13567778777 8543 321111223589999853567999999999999987654
No 30
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.85 E-value=9e-20 Score=191.12 Aligned_cols=314 Identities=13% Similarity=0.116 Sum_probs=214.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKK 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~k 327 (629)
+|.......++.+++++++|.+ ....++|+|||+++..++...+ . ..|+++...|++ +.+
T Consensus 28 ~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------------~-d~vl~~~~~~~~~~~~~ 91 (353)
T 2yrr_A 28 DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------------R-GPVLVLVNGAFSQRVAE 91 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------------C-CCEEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------------C-CcEEEEcCCCchHHHHH
Confidence 5666677889999999999996 4568999999999887765431 1 125556667887 456
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
+++..|+ +++.||.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ ++
T Consensus 92 ~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~ 163 (353)
T 2yrr_A 92 MAALHGL---DPEVLDFPPGEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVT 163 (353)
T ss_dssp HHHHTTC---CEEEEECCTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHcCC---ceEEEeCCCCCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCc
Confidence 6778898 9999999999999999999998751 345678888999999999999999999999999999 66
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCC-CccccCCcCCCcccCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASA-SYLFQKDKFYDTKYDS 484 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~-~yl~~~~~~~~~~~~~ 484 (629)
+...... .... .++|.+++++||++++|.|+|+++++++ ..... ...+ .|+.... +.....
T Consensus 164 ~~~~~~~---------~~~~----~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~l-~~~~~~~~~~~~--~~~~~~- 225 (353)
T 2yrr_A 164 TLGMLPF---------SMRA----MGVDYAFTGSQKCLSAPPGLAPIAASLE-ARKAF-TGKRGWYLDLAR--VAEHWE- 225 (353)
T ss_dssp TTTTSCC---------CHHH----HTCSEEECCTTSTTCCCSSCEEEEECHH-HHHHC-CCCSCSTTCHHH--HHHHHT-
T ss_pred ccccccc---------cccc----cCceEEEecCcccccCCCceEEEEECHH-HHHHh-ccCCCccccHHH--Hhhhhh-
Confidence 4322111 1111 1489999999999988889999998774 33322 1101 1110000 000000
Q ss_pred CCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--CceEEEEEeeCCCCCCCC
Q psy1785 485 GDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP--ECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 485 ~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p--~~~~v~F~~~p~~~~~~~ 561 (629)
.....++... ....++.+++.+...|++++.++..++++++.+.|++. |++++. ++ ....++|++. .+..
T Consensus 226 -~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~-~~~~--- 298 (353)
T 2yrr_A 226 -RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYP-KASPLPTVLVVRPP-EGVD--- 298 (353)
T ss_dssp -TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESC-SSSBCTTEEEEECC-TTCC---
T ss_pred -cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcccc-CccCCCeEEEEECC-CCCC---
Confidence 0001122222 33445566776666789999999999999999999998 998765 33 3344567652 2111
Q ss_pred chhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHH-HHHHHHHHHhhc
Q psy1785 562 DQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMD-YFIDEIERLGHD 628 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid-~l~~~i~~l~~~ 628 (629)
..++.++|.++|..+....... ..+++|++++ ...+++|++ ++++.|+++.+.
T Consensus 299 ------------~~~~~~~l~~~gi~v~~g~~~~-~~~~iRi~~~-~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 299 ------------ADRLVRALYAEGVAVAGGIGPT-RGQVLRLGLM-GEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ------------HHHHHHHHHHTTEECEECCGGG-TTTCEEEECS-GGGSCHHHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHHCCEEEeCCcccc-CCCeEEEecC-ccCCHHHHHHHHHHHHHHHHhh
Confidence 1356778888886433222111 2358999995 778888998 999999987653
No 31
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.85 E-value=1.3e-19 Score=190.91 Aligned_cols=317 Identities=15% Similarity=0.163 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHhCCCC--CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH-HHHHHHHcC
Q psy1785 257 LMEEHVLAQMRTIVGFQG--GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS-IKKLAAFEG 333 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~--~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S-i~kaa~~lG 333 (629)
....++.+++++++|.+. ...++++|||+++..++.+.+.. | ..+++.+...|.+ +..++...|
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~--------g-----d~vi~~~~~~~~~~~~~~~~~~g 103 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGP--------Q-----DKVLIVSNGAYGARMVEMAGLMG 103 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCT--------T-----CCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCC--------C-----CeEEEEeCCCccHHHHHHHHHhC
Confidence 345677888999999332 25899999999998887765321 1 3356667788876 567788889
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccc
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLL 411 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~ 411 (629)
+ +++.+|+++++.+|+++|+++|.+. ..+..|..+...+.+|.+.|+++|.++|+++|+++++ +++.....
T Consensus 104 ~---~~~~v~~~~~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~ 176 (366)
T 1m32_A 104 I---AHHAYDCGEVARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP 176 (366)
T ss_dssp C---CEEEEECCTTSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC
T ss_pred C---ceEEEeCCCCCCCCHHHHHHHHhcC----CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC
Confidence 8 9999999988999999999999752 1245676778888999999999999999999999999 65533221
Q ss_pred cccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC-CCccCC
Q psy1785 412 TAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS-GDKHIQ 490 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~-~~~~~~ 490 (629)
. ... +.++|+++.++||++++|.++|+++++++ ...........|.+.....+...... +. ..
T Consensus 177 ~---------~~~----~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 240 (366)
T 1m32_A 177 M---------DIA----ALHIDYLISSANKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGK--WR 240 (366)
T ss_dssp C---------CTT----TTTCSEEEEESSSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTC--CS
T ss_pred c---------ccc----ccCccEEEecCcccccCCCceEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCC--CC
Confidence 1 111 12489999999999988999999999873 33322111111211000000000000 00 00
Q ss_pred CCCC-cchHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHhcCCCcEEEccC--CCce-EEEEEeeCC-CCCCCCchh
Q psy1785 491 CGRK-PDVLKFWFMWKAKGTDG-LEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE--PECT-NISFWYIPP-SLRGKEDQA 564 (629)
Q Consensus 491 ~sr~-~~al~~w~~l~~~G~~G-~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~--p~~~-~v~F~~~p~-~~~~~~~~~ 564 (629)
.+.. .....+..+++.+...| ++++.++..++++++.+.|++. +++++. + +..+ .++|++.+. +..
T Consensus 241 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~------ 312 (366)
T 1m32_A 241 FTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLL-DDELHSPIITAFYSPEDPQYR------ 312 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CGGGBCSSEEEEECCCCTTCC------
T ss_pred CCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeecc-CchhcCceEEEEEcCccCCCC------
Confidence 1111 12344555666655566 8889999999999999999998 887654 3 2344 566665320 110
Q ss_pred hHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 565 DFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 565 ~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
..++.+.|.++|..+..... .+ .+++|++++ ..++++||+++++.|+++.+++
T Consensus 313 ---------~~~~~~~l~~~gi~v~~~~~-~~-~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 313 ---------FSEFYRRLKEQGFVIYPGKV-SQ-SDCFRIGNI-GEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp ---------HHHHHHHHHHTTEECEECCC-SS-SCEEEEECC-SSCCHHHHHHHHHHHHHHCTTC
T ss_pred ---------HHHHHHHHHHCCEEEECCcC-CC-CCEEEEecC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 13567788888854322211 12 358999996 8889999999999999887653
No 32
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.85 E-value=4.8e-19 Score=189.45 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHhCC-CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH----HHHH
Q psy1785 255 FSLMEEHVLAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI----KKLA 329 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~-~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si----~kaa 329 (629)
......++.+++++++|. +....++++|+|+++..++.+.+.... .|...|++...+|++. ...+
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~vl~~~~~~~~~~~~~~~~~ 134 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNV----------RAGDNIIISQMEHHANIVPWQMLC 134 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHC----------CTTCEEEEETTCCGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcC----------CCCCEEEEecccchHHHHHHHHHH
Confidence 345567788899999998 457899999999999988887653211 1344567777888764 3456
Q ss_pred HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCc
Q psy1785 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg 407 (629)
+..|. +++.+|.++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|+++|+++|+++++ +++.
T Consensus 135 ~~~g~---~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~ 205 (406)
T 1kmj_A 135 ARVGA---ELRVIPLNPDGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205 (406)
T ss_dssp HHHTC---EEEEECBCTTSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred HhCCC---EEEEEecCCCCCcCHHHHHHHhcc------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhc
Confidence 77888 899999998899999999998853 366788888999999999999999999999999999 6654
Q ss_pred cccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCC--ccccCCcCCCcccCCC
Q psy1785 408 HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS--YLFQKDKFYDTKYDSG 485 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~--yl~~~~~~~~~~~~~~ 485 (629)
+.... ... +.++|+++.++||++ +|.|+|++++++ ++.......... +...........+...
T Consensus 206 g~~~~---------~~~----~~~~d~~~~s~~K~~-g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (406)
T 1kmj_A 206 MHHPV---------DVQ----ALDCDFYVFSGHKLY-GPTGIGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKA 270 (406)
T ss_dssp TTSCC---------CHH----HHTCSEEEEEGGGTT-SCTTCEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCT
T ss_pred CCCCC---------ccc----ccCCCEEEEEchhcc-CCCCcEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCC
Confidence 32211 111 114899999999988 577799999865 344332111100 0000000000000000
Q ss_pred CccCCCC-CCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-CceEEEEEeeCCCCCCCCc
Q psy1785 486 DKHIQCG-RKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-ECTNISFWYIPPSLRGKED 562 (629)
Q Consensus 486 ~~~~~~s-r~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-~~~~v~F~~~p~~~~~~~~ 562 (629)
...++.+ ... .++.+..+++.+...++++..++..++++++.+.|+++++++++. ++ ..+.++|.+ + +..
T Consensus 271 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~-~-~~~---- 343 (406)
T 1kmj_A 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG-PQNRLGVIAFNL-G-KHH---- 343 (406)
T ss_dssp TGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEES-CTTCCSEEEEEE-T-TCC----
T ss_pred chhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCCcCCEEEEEE-C-CCC----
Confidence 0111122 222 233333556666556888899999999999999999998999875 32 566777764 2 110
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEeeee-------cCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITYQP-------IHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~-------~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++|..+..... ..+..+++|+++. ..+|++|++++++.|+++.+.
T Consensus 344 -----------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 344 -----------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp -----------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEee-cCCCHHHHHHHHHHHHHHHHh
Confidence 12456778888865432221 0122368999996 888999999999999987653
No 33
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=2e-19 Score=188.74 Aligned_cols=311 Identities=14% Similarity=0.062 Sum_probs=211.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK--KLA 329 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~--kaa 329 (629)
++.......++.+++++++|.+....++++|||+++..++.+... |...|+++..+|++.. +.+
T Consensus 29 ~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~ 94 (352)
T 1iug_A 29 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------------PGERVLVPVYGKFSERFYEIA 94 (352)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--------------CCCeEEEEeCCchhHHHHHHH
Confidence 455566678899999999999866789999999999888776521 3345777778898864 445
Q ss_pred HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc--CCeEEE--ec
Q psy1785 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY--DMADSV--TW 405 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~--~~~lhV--A~ 405 (629)
...|. +++.||+++++.+|+++|++ ..+.+|+.+...+.+|.+.|+++|.++|+++ |+++++ ++
T Consensus 95 ~~~g~---~~~~v~~~~~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~ 162 (352)
T 1iug_A 95 LEAGL---VVERLDYPYGDTPRPEDVAK---------EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVT 162 (352)
T ss_dssp HHTTC---EEEEEECCTTCCCCTTTSCC---------SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred HHcCC---ceEEEeCCCCCCCCHHHHhc---------cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCc
Confidence 55788 99999999889999988876 1355778888999999999999999999999 999999 55
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
+...... ... ..++|+++.++|||+++|.++|+++++++ .+..... ...|+.-.. .. .. ..
T Consensus 163 ~~~~~~~---------~~~----~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~-~~~~~~~~~-~~-~~--~~ 223 (352)
T 1iug_A 163 SLLVGEV---------ALE----AMGVDAAASGSQKGLMCPPGLGFVALSPR-ALERLKP-RGYYLDLAR-EL-KA--QK 223 (352)
T ss_dssp TBTTBCC---------CSG----GGTCSEEEEESSSTTCCCSCEEEEEECHH-HHHTCCC-CSSTTCHHH-HH-HH--HT
T ss_pred cccCcce---------ecc----ccCeeEEEecCcccccCCCceeEEEECHH-HHHHhhC-CCceeeHHH-HH-hh--cc
Confidence 4322111 111 11489999999999999999999998764 3332111 001110000 00 00 00
Q ss_pred CccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-CceEEEEEeeCCCCCCCCch
Q psy1785 486 DKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-ECTNISFWYIPPSLRGKEDQ 563 (629)
Q Consensus 486 ~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-~~~~v~F~~~p~~~~~~~~~ 563 (629)
.....++... ....+..+++.+... ++++.++..++++++.+.|++. |++++. ++ ..+.++|++.. +..
T Consensus 224 ~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~-~~~----- 294 (352)
T 1iug_A 224 EGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVP-KRFSPAVAAFYLPE-GVP----- 294 (352)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESC-SSBCTTCEEEECCT-TCC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccc-cccCCeEEEEEcCC-CCC-----
Confidence 0000111111 233445556655444 8889999999999999999998 998764 32 44566776531 111
Q ss_pred hhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 564 ADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|.++|..+.... .....+++|++++ ..+|++|++++++.|+++.++
T Consensus 295 ----------~~~~~~~l~~~gi~v~~~~-~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 295 ----------YARVKEAFAQRGAVIAGGQ-GPLKGKVFRLSLM-GAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ----------HHHHHHHHHTTTEECEECC-GGGTTTEEEECCC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHCCEEEEeCC-CccCCCEEEEEcc-ccCCHHHHHHHHHHHHHHHHH
Confidence 1356778888885433222 1112358999996 788999999999999987654
No 34
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.84 E-value=4.6e-19 Score=189.27 Aligned_cols=321 Identities=13% Similarity=0.118 Sum_probs=211.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI--KKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si--~ka 328 (629)
.+.......++.+++++++|.+.. ..++++|||+++..++.+... |...|+++..+|++. .+.
T Consensus 47 ~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~ 112 (393)
T 2huf_A 47 HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLE--------------DGDVILIGHTGHWGDRSADM 112 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhC--------------CCCEEEEECCCcchHHHHHH
Confidence 455566778899999999999764 688999999999888776521 334566677778773 344
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+...|. +++.+|.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 113 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~ 184 (393)
T 2huf_A 113 ATRYGA---DVRVVKSKVGQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVAS 184 (393)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT
T ss_pred HHHcCC---eeEEEeCCCCCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccc
Confidence 556788 8999999988999999999999752 245677788889999999999999999999999999 443
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC---CCCccccCCcCCCcccC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA---SASYLFQKDKFYDTKYD 483 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~---~~~yl~~~~~~~~~~~~ 483 (629)
..... . ... ..++|+++.++||++++|.|+|++++++ +........ ..+|........ ..+.
T Consensus 185 ~~~~~---~------~~~----~~~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 249 (393)
T 2huf_A 185 LGGAP---M------FMD----RWEIDAMYTGSQKVLGAPPGITPVSFSH-RAVERYKRRNTKVKVYYWDMSLVG-DYWG 249 (393)
T ss_dssp BTTBC---C------CTT----TTTCSEEECCSSSTTCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHH-HHTT
T ss_pred cCCCC---c------chh----hcCccEEEECCCcccccCCCeEEEEECH-HHHHHHhhcCCCCceEEEchHHHH-hhhc
Confidence 22111 0 111 1248999999999998888999999875 444432221 112221100000 0000
Q ss_pred C-CCccCC-CCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--Cce-EEEEEeeCCCC
Q psy1785 484 S-GDKHIQ-CGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP--ECT-NISFWYIPPSL 557 (629)
Q Consensus 484 ~-~~~~~~-~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p--~~~-~v~F~~~p~~~ 557 (629)
. ...... ++... ....+..+++.+...|+++..++..++++++.+.|+++ |++++. ++ ..+ .++|++. .+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~-~~~ 326 (393)
T 2huf_A 250 CFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYA-DPKDRLSTVTTIKVP-QGV 326 (393)
T ss_dssp CSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CGGGBCTTEEEEECC-TTC
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeecc-CccccCCcEEEEEcC-CCC
Confidence 0 000011 12222 23334446666555678899999999999999999998 888664 32 223 5667653 111
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. ..++.++|.++ |..+...... ...+++|++++...++++|++++++.|+++.++
T Consensus 327 ~---------------~~~~~~~L~~~~gi~v~~g~~~-~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 327 D---------------WLKAAQYAMKTYLVEISGGLGP-TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp C---------------HHHHHHHHHHHHCEECBCCCGG-GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred C---------------HHHHHHHHHHhCCEEEecCccc-ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 1 12566777665 7543211111 123589999953567899999999999887543
No 35
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.84 E-value=3.1e-19 Score=190.74 Aligned_cols=317 Identities=15% Similarity=0.170 Sum_probs=217.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~ka 328 (629)
++....+..++.+++++++|.+.. ..++++|||+++..++.+... |...|++...+|++ +..+
T Consensus 62 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~ 127 (393)
T 1vjo_A 62 DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--------------PGDVVLIGVAGYFGNRLVDM 127 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccC--------------CCCEEEEEcCChhHHHHHHH
Confidence 344556778889999999999766 799999999999888876531 33456677788888 8888
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
++..|. +++.+|.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 128 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~ 199 (393)
T 1vjo_A 128 AGRYGA---DVRTISKPWGEVFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTS 199 (393)
T ss_dssp HHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT
T ss_pred HHHcCC---ceEEEecCCCCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcc
Confidence 899998 9999999998999999999999753 244677788889999999999999999999999999 665
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC---CCccccCCcCCCcccC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS---ASYLFQKDKFYDTKYD 483 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~---~~yl~~~~~~~~~~~~ 483 (629)
..... . ... ..++|+++.++||++++|.++|+++++++ ......... ..+...... ...+
T Consensus 200 ~g~~~---~------~~~----~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~- 262 (393)
T 1vjo_A 200 LGGVP---I------FLD----AWGVDLAYSCSQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYLDMNL--LGKY- 262 (393)
T ss_dssp TTTSC---C------CTT----TTTCSEEECCSSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHH--HHHH-
T ss_pred ccCcC---C------ccc----ccCccEEEEcCcccccCCCceEEEEECHH-HHHHHhccCCCCCceecCcHh--hhhh-
Confidence 22211 1 111 12489999999999999999999999764 333221110 111110000 0000
Q ss_pred CCCccCCC-CCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC---ceEEEEEeeCCCCC
Q psy1785 484 SGDKHIQC-GRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE---CTNISFWYIPPSLR 558 (629)
Q Consensus 484 ~~~~~~~~-sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~---~~~v~F~~~p~~~~ 558 (629)
........ +.. .....+..+++.+..++++++.++..++++++.+.|++. |++++. +.. .+.++|++ |.+..
T Consensus 263 ~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~-~~~~~ 339 (393)
T 1vjo_A 263 WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHV-EKEYRLPTLTTVCI-PDGVD 339 (393)
T ss_dssp HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CGGGBCSSEEEEEC-CTTCC
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccC-CccccCCcEEEEEc-CCCCC
Confidence 00001112 222 234455666766556678899999999999999999998 888654 221 24566665 22111
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.++|.++ |..+....... ..+++|+++....+++++++.+++.|+++.
T Consensus 340 ---------------~~~~~~~l~~~~gi~v~~g~~~~-~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 340 ---------------GKAVARRLLNEHNIEVGGGLGEL-AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ---------------HHHHHHHHHHHHCEECEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHhhCCEEEecCcccc-CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 13567778877 86543322211 236899996436678889999999998764
No 36
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.84 E-value=1.8e-18 Score=183.55 Aligned_cols=306 Identities=13% Similarity=0.186 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH---H
Q psy1785 254 VFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA---A 330 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa---~ 330 (629)
.......++.+++++++|.+....++++|||+++..++.+.+.... .|...|+++..+|+++..++ .
T Consensus 41 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~vl~~~~~~~~~~~~~~~~~ 110 (384)
T 1eg5_A 41 EANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFE----------KRKRTIITTPIEHKAVLETMKYLS 110 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTT----------TTCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhcc----------CCCCEEEECCCCchHHHHHHHHHH
Confidence 3455667888999999998777899999999999988887764110 13446778888999887766 5
Q ss_pred HcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcC--CeEEE--ecC
Q psy1785 331 FEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD--MADSV--TWN 406 (629)
Q Consensus 331 ~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~--~~lhV--A~g 406 (629)
..|. +++.||.++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|++++ +++++ +++
T Consensus 111 ~~g~---~~~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 111 MKGF---KVKYVPVDSRGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp HTTC---EEEECCBCTTSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTT
T ss_pred hcCC---EEEEEccCCCCccCHHHHHHHhCC------CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhh
Confidence 6787 899999998899999999988853 3667888889999999999999999999999 99999 554
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 486 (629)
..... . ... +.++|++++++||+++ |.|+|+++++++-.+. .++..... . .
T Consensus 182 ~~~~~---~------~~~----~~~~di~~~s~sK~~g-~~G~G~~~~~~~~~~~-------~~~~~~~~--~------~ 232 (384)
T 1eg5_A 182 IGKIP---F------SLE----KLEVDYASFSAHKFHG-PKGVGITYIRKGVPIR-------PLIHGGGQ--E------R 232 (384)
T ss_dssp TTTSC---C------CCT----TTCCSEEEEEGGGGTS-CTTCEEEEECTTSCCC-------CSBCSSCT--T------T
T ss_pred cCCcc---c------Cch----hcCCCEEEecHHHhcC-CCceEEEEEcCCCccc-------cccccCcc--c------c
Confidence 21111 0 111 1148999999999865 6668999887641011 11111000 0 0
Q ss_pred ccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC---CceEEEEEeeCCCCCCCCc
Q psy1785 487 KHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP---ECTNISFWYIPPSLRGKED 562 (629)
Q Consensus 487 ~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p---~~~~v~F~~~p~~~~~~~~ 562 (629)
.....+.. .....++.+++.. .+++++..++..++++++.+.|++ +|++++. ++ ....+.|.+.. ..
T Consensus 233 ~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~-~~~~~~~~~~~~~~~~--~~---- 303 (384)
T 1eg5_A 233 GLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIIT-PLEISLPNTLSVSFPN--IR---- 303 (384)
T ss_dssp TTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECS-CTTSBCTTEEEEECTT--CC----
T ss_pred cccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeC-CcccCCCCEEEEEeCC--CC----
Confidence 00011111 1233444555542 457888999999999999999998 6998865 32 23456676531 10
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC-------------C-----ccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITYQPIH-------------A-----LPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-------------~-----~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
..++.+.|.+.|.......... + ..+++|+++. ..+|++||+++++.|++
T Consensus 304 -----------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~ 371 (384)
T 1eg5_A 304 -----------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEE 371 (384)
T ss_dssp -----------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHH
Confidence 1246677777885432211010 1 1268999995 88999999999999998
Q ss_pred Hhhc
Q psy1785 625 LGHD 628 (629)
Q Consensus 625 l~~~ 628 (629)
+.++
T Consensus 372 ~~~~ 375 (384)
T 1eg5_A 372 ILSF 375 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 37
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=4.1e-19 Score=188.78 Aligned_cols=326 Identities=14% Similarity=0.099 Sum_probs=210.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCC----CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEE-cCCcchHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQ----GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYT-SEDAHYSIK 326 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~----~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~-s~~~H~Si~ 326 (629)
.|.......+++++++++++.. ....++++|||+++..++.+.... .+.| .-+++. +...|.++.
T Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~-----~~~g-----d~vlv~~~~~~~~~~~ 102 (385)
T 2bkw_A 33 SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS-----KAPN-----KNVLVVSTGTFSDRFA 102 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT-----TCSC-----CEEEEECSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc-----CCCC-----CeEEEEcCCcchHHHH
Confidence 5655556667888899988764 247899999999998887765311 0112 233344 445566666
Q ss_pred HHHHHcCCCCCCEEEEec-CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc--CCeEEE
Q psy1785 327 KLAAFEGLGSDNVYLIKT-DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY--DMADSV 403 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~-d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~--~~~lhV 403 (629)
++++..|. +++.|++ ++++.+|+++|+++|.+ . .+.+|+.+...+.+|.+.|+++|.++|+++ |+++++
T Consensus 103 ~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~----~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 103 DCLRSYGA---QVDVVRPLKIGESVPLELITEKLSQ----N-SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp HHHHHTTC---EEEEECCSSTTSCCCHHHHHHHHHH----S-CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHcCC---ceEEEecCCCCCCCCHHHHHHHHhc----C-CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEE
Confidence 77888898 9999999 88899999999999875 1 245677888899999999999999999999 999999
Q ss_pred --ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhh-hhh----cCCCCccccCCc
Q psy1785 404 --TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLT-ECH----SASASYLFQKDK 476 (629)
Q Consensus 404 --A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~-~~~----~~~~~yl~~~~~ 476 (629)
+++...... ... +.++|++++++||++++|.|+|+++++++ .+. ... .....|......
T Consensus 175 D~a~~~~~~~~---------~~~----~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 240 (385)
T 2bkw_A 175 DAVCSIGCEEF---------EFD----EWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYALNDSKNGHVHGYFSSLRR 240 (385)
T ss_dssp ECTTTTTTSCC---------CTT----TTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCHHHHCCCSCSTTCHHH
T ss_pred ECccccCCccc---------ccc----ccCceEEEecCccccccCCcceEEEEcHH-HHHHHHhhccCCCCCceeecHHH
Confidence 554322211 111 12589999999999998999999998764 333 210 000111100000
Q ss_pred CCC--cccCCCCccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH-hcCCCcEEEccCC----CceEE
Q psy1785 477 FYD--TKYDSGDKHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKI-RHRPGFKLVLDEP----ECTNI 548 (629)
Q Consensus 477 ~~~--~~~~~~~~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L-~~~~g~~l~~~~p----~~~~v 548 (629)
... ..+..+.....++.. ...+.+..+++.+...|++++.++..++++++.+.| +++ +++++.+++ ..+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~ 319 (385)
T 2bkw_A 241 WTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLT 319 (385)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCE
T ss_pred HhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceE
Confidence 000 000000000001111 133445566666555678889999999999999999 887 888764121 34566
Q ss_pred EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEe-ec-CC-CCCHHHHHHHHHHHHHH
Q psy1785 549 SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLV-LQ-NS-ALDHSDMDYFIDEIERL 625 (629)
Q Consensus 549 ~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~-~~-n~-~~t~edid~l~~~i~~l 625 (629)
+|++.. ..++.++|.++|..+..........+++|++ +. +. .+|++|++++++.|+++
T Consensus 320 ~~~~~~-------------------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 320 AVYVAD-------------------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp EEECSC-------------------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred EEecCC-------------------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 676421 1356777878885432211111124689999 53 22 47999999999999988
Q ss_pred hhcC
Q psy1785 626 GHDL 629 (629)
Q Consensus 626 ~~~l 629 (629)
.+++
T Consensus 381 ~~~~ 384 (385)
T 2bkw_A 381 LQRK 384 (385)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 7653
No 38
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.83 E-value=3.5e-19 Score=189.61 Aligned_cols=314 Identities=11% Similarity=0.121 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH----HHHH
Q psy1785 256 SLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK----LAAF 331 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k----aa~~ 331 (629)
.....++.+.+++++|.+....++++|||+++..++.+.+. .|...|++...+|.+... .++.
T Consensus 58 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW-------------HQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC-------------CTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCC-------------CCCCEEEEecCcccHHHHHHHHHHHH
Confidence 35567788899999998767899999999998877765421 134467778888888554 3567
Q ss_pred cCCCCCCEEEEecC--CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHH----HcCCeEEE--
Q psy1785 332 EGLGSDNVYLIKTD--ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICA----EYDMADSV-- 403 (629)
Q Consensus 332 lGlg~~~v~~V~~d--~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~----~~~~~lhV-- 403 (629)
.|. +++.+|.+ +++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+ ++|+++++
T Consensus 125 ~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~De 195 (390)
T 1elu_A 125 FGI---TYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195 (390)
T ss_dssp HCC---EEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEEC
T ss_pred hCc---EEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEc
Confidence 788 89999987 6788999999988853 3667888889999999999999999999 99999999
Q ss_pred ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
+++.+.... ... ..++|+++.++|||+++|.++|+++++++ ...........+-..........++
T Consensus 196 a~~~g~~~~---------~~~----~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 261 (390)
T 1elu_A 196 AQSAGSLPL---------DFS----RLEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTG 261 (390)
T ss_dssp TTTBTTBCC---------CTT----TSCCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEE
T ss_pred ccccCCcCC---------Chh----hcCCCEEEccccccccCCCceEEEEECHH-hHhhcCCccccCCcccccccCcccc
Confidence 665322111 111 12489999999999999999999999763 4332211100000000000000000
Q ss_pred CCC--ccCCCCC-C-cchHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEEEEeeCCCC
Q psy1785 484 SGD--KHIQCGR-K-PDVLKFWFMWKAKGTDG-LEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSL 557 (629)
Q Consensus 484 ~~~--~~~~~sr-~-~~al~~w~~l~~~G~~G-~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~F~~~p~~~ 557 (629)
+.+ ..+..+. . .....+..+++.+...| ++++.++..++++++.+.|++++|++++.+ ++..+.++|++. .+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~ 340 (390)
T 1elu_A 262 WAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-SPL 340 (390)
T ss_dssp ECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-SSS
T ss_pred cccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC-CCC
Confidence 000 0111221 2 12344556666665555 888999999999999999999889988752 134566777653 211
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
. ..++.++|.++|..+.... + .+++|++++ ..++++|++++++.|++++
T Consensus 341 ~---------------~~~~~~~l~~~gi~v~~~~---~-~~~iRis~~-~~~~~~~i~~~~~~l~~~~ 389 (390)
T 1elu_A 341 G---------------HRAIVQKLEEQRIYLRTIA---D-PDCIRACCH-YITDEEEINHLLARLADFG 389 (390)
T ss_dssp C---------------HHHHHHHHHHTTEECEEET---T-TTEEEEECC-TTCCHHHHHHHHHHHTTCC
T ss_pred C---------------HHHHHHHHHHCCEEEEecC---C-CCeEEEecc-cCCCHHHHHHHHHHHHhhC
Confidence 1 1256777878886432221 2 358999995 8899999999999998754
No 39
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.83 E-value=8.8e-19 Score=188.04 Aligned_cols=306 Identities=14% Similarity=0.100 Sum_probs=204.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHH--
Q psy1785 254 VFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAF-- 331 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~-- 331 (629)
.......++.+++++++|.+....++++|+|+++..++.+..... .|...|+++..+|.+...+...
T Consensus 66 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~ 134 (406)
T 3cai_A 66 RSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRA-----------GLGYEVIVSRLDDEANIAPWLRAA 134 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGG-----------BTTCEEEEETTSCGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhcc-----------CCCCEEEEcCCccHHHHHHHHHHH
Confidence 345566788899999999976789999999988766554321110 1334677788889886655443
Q ss_pred --cCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 332 --EGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 332 --lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
.|. +++.||++ ++|.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 135 ~~~g~---~v~~v~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 205 (406)
T 3cai_A 135 HRYGA---KVKWAEVDIETGELPTWQWESLISK------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAA 205 (406)
T ss_dssp HHHBC---EEEEECCCTTTCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HhcCC---eEEEEecCcccCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccc
Confidence 688 99999998 7899999999998853 367888899999999999999999999999999999 665
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccE-EEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCS-VFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g-~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
......+ .. ..++|++++++||+++ |. +| ++++++ ++........ +.+... .
T Consensus 206 ~g~~~~~---------~~----~~~~d~~~~s~~K~~g-~~-~G~~~~~~~-~~~~~l~~~~--~~~~~~---------~ 258 (406)
T 3cai_A 206 APYRLLD---------IR----ETDADVVTVNAHAWGG-PP-IGAMVFRDP-SVMNSFGSVS--TNPYAT---------G 258 (406)
T ss_dssp TTTCCCC---------HH----HHCCSEEEEEGGGGTS-CS-CEEEEESCH-HHHHTSCCCC--SCTTCC---------G
T ss_pred cCCCCCC---------ch----hcCCCEEEeehhhhcC-CC-cCeEEEEeh-HHHhhcCCcc--cCCCCC---------c
Confidence 3322111 11 1248999999999876 65 88 777765 3433221110 000000 0
Q ss_pred CccCC-CCCCc-chHHHHHHHHhcChh--------------hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--CceE
Q psy1785 486 DKHIQ-CGRKP-DVLKFWFMWKAKGTD--------------GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP--ECTN 547 (629)
Q Consensus 486 ~~~~~-~sr~~-~al~~w~~l~~~G~~--------------G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p--~~~~ 547 (629)
...+. ++... ....+..+++.+... +++++.++..++++++.+.|+++++++++. +. ..+.
T Consensus 259 ~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~ 337 (406)
T 3cai_A 259 PARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIG-RPEAQIPV 337 (406)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECC-CCSSBCSE
T ss_pred cccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CccccCCE
Confidence 00111 11121 122233344433222 478888899999999999999998998765 22 3566
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee------e--cCCccceEEEeecCCCCCHHHHHHHH
Q psy1785 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ------P--IHALPNFFRLVLQNSALDHSDMDYFI 619 (629)
Q Consensus 548 v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~------~--~~~~~~~lR~~~~n~~~t~edid~l~ 619 (629)
++|++.. .. ..++.+.|.++|..+.... . .....+++|+++. ..+|++||++++
T Consensus 338 ~~~~~~~--~~---------------~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~ 399 (406)
T 3cai_A 338 VSFAVHK--VP---------------ADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLV 399 (406)
T ss_dssp EEEEETT--BC---------------HHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHH
T ss_pred EEEEECC--cC---------------HHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHH
Confidence 7777531 10 1246677777886433221 0 1111258999996 889999999999
Q ss_pred HHHHHH
Q psy1785 620 DEIERL 625 (629)
Q Consensus 620 ~~i~~l 625 (629)
+.|+++
T Consensus 400 ~~l~~~ 405 (406)
T 3cai_A 400 RALASL 405 (406)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 999875
No 40
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.82 E-value=1e-18 Score=185.47 Aligned_cols=315 Identities=15% Similarity=0.119 Sum_probs=205.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-CeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKK 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~k 327 (629)
++....+..++.+++++++|.+.. +.++ ++|||+++..++.+... |...|++....+++ +..
T Consensus 47 ~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~--------------~gd~vi~~~~~~~~~~~~~ 112 (376)
T 3f0h_A 47 TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT--------------KKDKVLVIDGGSFGHRFVQ 112 (376)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC--------------TTCCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC--------------CCCeEEEEeCChhhHHHHH
Confidence 455666778889999999999853 4555 78889998877765532 22223334333333 334
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
.+...|. +++.++.+.++.+|+++|++++.. .+.+|+.+...+.+|.+.|+++|+++|+++|+++++ ++
T Consensus 113 ~~~~~g~---~~~~v~~~~~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~ 183 (376)
T 3f0h_A 113 LCEIHEI---PYVALKLEHGKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVS 183 (376)
T ss_dssp HHHHTTC---CEEEEECCTTCCCCHHHHHTTTTS------CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCC---ceEEEeCCCCCCCCHHHHHHhhcc------CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCc
Confidence 5677788 999999998899999999886532 456788887889999999999999999999999999 44
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC-CCC-ccccCCcCCCcccC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA-SAS-YLFQKDKFYDTKYD 483 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~-~~~-yl~~~~~~~~~~~~ 483 (629)
+....... .. +.|+|++++++||++++|.|+|+++++++ ........ ... |+..... ...
T Consensus 184 ~~~~~~~~---------~~----~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~--- 245 (376)
T 3f0h_A 184 AFLADPFN---------MN----ECGADVMITGSQKVLACPPGISVIVLAPR-GVERVEKSKVRTMYFDLKDA-LKN--- 245 (376)
T ss_dssp TTTTSCCC---------HH----HHTCSEEEEETTTTTCCCSSCEEEEECHH-HHHHHHTCCCCCSTTCHHHH-HHH---
T ss_pred cccCcccc---------cc----ccCccEEEecCcccccCCCceEEEEECHH-HHHHhhcCCCCceeecHHHH-Hhh---
Confidence 43322111 11 12589999999999998899999888764 33332111 111 1110000 000
Q ss_pred CCCccCCCCCCc-chHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCC
Q psy1785 484 SGDKHIQCGRKP-DVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 484 ~~~~~~~~sr~~-~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~ 561 (629)
........+-.. ....+..+++.+... |++++.++..++++++.+.|+++ ++++..+.+...++++. |.+..
T Consensus 246 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~--~~~~~--- 319 (376)
T 3f0h_A 246 QERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVH--PTTAN--- 319 (376)
T ss_dssp HTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEE--ESSSC---
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEe--CCCCC---
Confidence 000000011111 124556666666666 78999999999999999999987 78776411223333333 32211
Q ss_pred chhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 562 DQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.++|.++ |..+....... ..+++|+++. ..+|++|++++++.|+++.+
T Consensus 320 ------------~~~l~~~l~~~~gi~v~~g~~~~-~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 320 ------------AYDIFLKLKDEYGIWICPNGGEM-KDTIFRVGHI-GALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp ------------HHHHHHHHHHHSSEECEECCGGG-TTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhCCEEEecCcccc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 13567788888 75433221111 2358999996 78999999999999998764
No 41
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=194.53 Aligned_cols=310 Identities=13% Similarity=0.016 Sum_probs=203.1
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCC-CCeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH--H
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQG-GDGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI--K 326 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si--~ 326 (629)
.++.+..+-+++++.+++++|.++ ...+| ++|||+++..++...... .+...+....+.|++. .
T Consensus 52 r~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~------------~~Gd~v~~~~~g~~~~~~~ 119 (377)
T 3e77_A 52 RSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL------------KAGRCADYVVTGAWSAKAA 119 (377)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG------------STTCEEEECCCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC------------CCCCeEEEEECCHHHHHHH
Confidence 467788888999999999999976 46888 589999987777654321 1222344455666653 3
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE-ec
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV-TW 405 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV-A~ 405 (629)
+.++..|. .++.+++++++..++++++.++.. .+.+|..++..|++|.+.|+ +|+++|++++| +.
T Consensus 120 ~~a~~~G~---~~~~~~~~~~~~~~~~~~~~~i~~------~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~ 185 (377)
T 3e77_A 120 EEAKKFGT---INIVHPKLGSYTKIPDPSTWNLNP------DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMS 185 (377)
T ss_dssp HHHTTTSE---EEECSCCCSSSCSCCCGGGCCCCT------TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECT
T ss_pred HHHHHhCC---ceEEeccCCCcCCCCChHHhccCC------CccEEEEeCccCchheEchh-----hhccCCCEEEEEcc
Confidence 34444565 777788887777887776554432 35568889999999999998 47789999999 33
Q ss_pred C-ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 406 N-PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 406 g-g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
. .+....+ ++. .|.+++++|||+| |.|.|++++|++ .+.......+.|+.-.. ....
T Consensus 186 q~~g~~~id--------------~~~-~~~~~~s~~K~~g-p~G~g~l~~~~~-~l~~~~~~~p~~~~~~~-----~~~~ 243 (377)
T 3e77_A 186 SNFLSKPVD--------------VSK-FGVIFAGAQKNVG-SAGVTVVIVRDD-LLGFALRECPSVLEYKV-----QAGN 243 (377)
T ss_dssp TTTTSSCCC--------------GGG-CSEEEEEGGGTTS-CTTCEEEEEETT-SCSCCCTTSCGGGCHHH-----HHTT
T ss_pred cccCCCCCc--------------hhh-cCEEEEecccccC-CCccEEEEEcHH-HHhhccCCCCchhhHHH-----Hhhc
Confidence 2 2222221 222 4568999999995 999999999985 33322111223321000 0000
Q ss_pred CCccCCCCCC--cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC--CCc-eEEEEEeeCCCCC
Q psy1785 485 GDKHIQCGRK--PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE--PEC-TNISFWYIPPSLR 558 (629)
Q Consensus 485 ~~~~~~~sr~--~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~--p~~-~~v~F~~~p~~~~ 558 (629)
+ . ..+.+ +.++.+-.+++.+-.+ |++++.++..+++++|++.|++++|+++...+ ... .+++|.+....
T Consensus 244 ~--~-~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~-- 318 (377)
T 3e77_A 244 S--S-LYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAK-- 318 (377)
T ss_dssp T--T-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTT--
T ss_pred C--C-CCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCC--
Confidence 0 0 01122 1455666777777777 89999999999999999999999999864312 233 46899874311
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
. +.+ ++ ..+.+.+.++|...... .. ..+.+|+++. .++|++|||+|++.|+++.+
T Consensus 319 ~---~~~----~~---~~~l~~l~~~Gi~~~~g--~~-~~g~iRiS~~-~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 319 G---DDA----LE---KRFLDKALELNMLSLKG--HR-SVGGIRASLY-NAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp C---CHH----HH---HHHHHHHHHTTEESCBC--CT-TTCSEEEECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred C---chh----HH---HHHHHHHHHCCcEEeCC--CC-cCCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 0 011 11 24556666778542221 11 2246999996 89999999999999999865
No 42
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.82 E-value=1.2e-18 Score=186.20 Aligned_cols=320 Identities=12% Similarity=0.105 Sum_probs=212.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH--HH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK--KL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~--ka 328 (629)
+|.......++.+.+++++|.+.. ..++++|||+++..++.+... |...|++...+|.+.. +.
T Consensus 46 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~ 111 (396)
T 2ch1_A 46 HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--------------EGDRVLIAVNGIWAERAVEM 111 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC--------------CCCeEEEEcCCcccHHHHHH
Confidence 454455678889999999999876 688999999998887766521 3335666777788763 57
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
++..|. +++.|+.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 112 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~ 183 (396)
T 2ch1_A 112 SERYGA---DVRTIEGPPDRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVAS 183 (396)
T ss_dssp HHHTTC---EEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT
T ss_pred HHHcCC---ceEEecCCCCCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcccc
Confidence 788898 9999999988999999999999752 244677788889999999999999999999999999 555
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC---CCCccccCCcCCCcccC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA---SASYLFQKDKFYDTKYD 483 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~---~~~yl~~~~~~~~~~~~ 483 (629)
..... . ... ..++|+++.++||+++.|.++|++++++ ..+...... ...++...... ...+.
T Consensus 184 ~g~~~---~------~~~----~~~~d~~~~s~~K~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 248 (396)
T 2ch1_A 184 LCGVP---F------YMD----KWEIDAVYTGAQKVLGAPPGITPISISP-KALDVIRNRRTKSKVFYWDLLLL-GNYWG 248 (396)
T ss_dssp BTTBC---C------CTT----TTTCCEEECCCC-CCCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHH-HHHTT
T ss_pred ccCCc---c------chh----hcCcCEEEEcCCccccCCCCeEEEEECH-HHHHhhhhccCcccceEechHHH-HHhhh
Confidence 22111 1 111 1248999999999999999999988876 344332111 01111110000 00000
Q ss_pred C--CCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC---c-eEEEEEeeCCC
Q psy1785 484 S--GDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE---C-TNISFWYIPPS 556 (629)
Q Consensus 484 ~--~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~---~-~~v~F~~~p~~ 556 (629)
. ......++... ....+..+++.+..++++++.++..++++++.+.|++. |++++. +.. . ..++|++. .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~-~~ 325 (396)
T 2ch1_A 249 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFV-KDPRHRLPTVTGIMIP-KG 325 (396)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSS-CSGGGBCTTEEEEECC-TT
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeecc-CCccccCCceEEEEcC-CC
Confidence 0 00011112222 23445556666556788999999999999999999998 888764 221 1 25667652 21
Q ss_pred CCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 557 LRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.. ..++.++|.++ |..+...... ...+++|++++...++++|++++++.|+++.+
T Consensus 326 ~~---------------~~~~~~~L~~~~gi~v~~g~~~-~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~ 381 (396)
T 2ch1_A 326 VD---------------WWKVSQYAMNNFSLEVQGGLGP-TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 381 (396)
T ss_dssp CC---------------HHHHHHHHHHHHCBCCBCCCGG-GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred CC---------------HHHHHHHHHHhCCEEEecCccc-cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence 11 12566777765 8643221111 12358999995367899999999999988754
No 43
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.81 E-value=4.4e-19 Score=186.48 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH--HHHc--
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL--AAFE-- 332 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka--a~~l-- 332 (629)
....++.+++++++| ++...++++|||+++..++.+++ .|...|+++..+|++...+ +..+
T Consensus 43 ~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~--------------~~gd~vi~~~~~~~~~~~~~~~~~~~~ 107 (356)
T 1v72_A 43 ELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT--------------PPWGNIYCHPASHINNDECGAPEFFSN 107 (356)
T ss_dssp HHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC--------------CTTEEEEECTTSHHHHSSTTHHHHHTT
T ss_pred hHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc--------------CCCCEEEEcCccchhhhhchHHHHHhC
Confidence 455778889999999 54447999999999888776542 1455778888899998876 7777
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHH-HHHHHH-hCCCCcEEEEEeeCCCcccc---ccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRG-EIQRTL-AEGAVPFMVSATSGTTVLGA---FDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~-~i~~~~-~~g~~~~~Vvat~Gtt~~G~---idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
|. +++.||.+ ++.+|+++|++ +|.+.. ..+..+.+|+.+.. +.+|. .+++++|+++|++||+++|+ ++
T Consensus 108 g~---~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~-~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 182 (356)
T 1v72_A 108 GA---KLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQA-TEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSR 182 (356)
T ss_dssp SC---EEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred Cc---EEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcC-CCCCccCCHHHHHHHHHHHHHcCCeEEEEchh
Confidence 88 88999885 58899999998 775311 12224667777764 45898 78899999999999999999 55
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
..+....... ....++++.++|++++++||+ +.|.|+|+++.++ ++..... ++... .+
T Consensus 183 ~~~~~~~~~~------~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~-~~~~~~~-----~~~~~---------~~ 240 (356)
T 1v72_A 183 FANALVSLGC------SPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNT-SLATEMS-----YRRKR---------AG 240 (356)
T ss_dssp HHHHHHHHTC------CTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSG-GGHHHHH-----HHHHH---------TT
T ss_pred hHhHhccCCC------CHHHhhhhhcCCEEEEecccC-CCcCccEEEEECH-HHHhhHH-----HHhhc---------cC
Confidence 4322111000 001112222489999999999 6798888887744 4443321 11000 00
Q ss_pred CccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 486 ~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
. . .....+.....++.+..+.+.++.++..++++++.+.|++++|+++.. ++..+.+.+++.
T Consensus 241 ~----~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~------------ 302 (356)
T 1v72_A 241 H----L-SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLD------------ 302 (356)
T ss_dssp C----C-CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEES-CCCSSEEEEEEC------------
T ss_pred c----h-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEcc-CCCccEEEEEcC------------
Confidence 0 0 011223333345555555677788888999999999999988999876 455555555431
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.++.++|.++|..+.. ..+. .+++|+++. ..+|++|++++++.|+++.++
T Consensus 303 ---------~~~~~~l~~~gi~v~~-g~~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 303 ---------SAMIDALLKAGFGFYH-DRWG--PNVVRFVTS-FATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp ---------HHHHHHHHHTTCBCBC-SSSS--TTEEEEECC-TTCCHHHHHHHHHHHHHTC--
T ss_pred ---------HHHHHHHHhcCeEEec-cccC--CCeEEEEec-CCCCHHHHHHHHHHHHHHHHh
Confidence 1456777788864322 1122 368999984 889999999999999987543
No 44
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.81 E-value=1.7e-18 Score=184.95 Aligned_cols=321 Identities=12% Similarity=0.131 Sum_probs=206.1
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHHH
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKKL 328 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~ka 328 (629)
.++.+..+..++.+++++++|.+ ...+|++|||+++..++... . |...|++....|++ +...
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~--~-------------~gd~vi~~~~~~~~~~~~~~ 92 (379)
T 3ke3_A 29 MSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL--T-------------IDEDCLIIRNGWFSYRWTQI 92 (379)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH--C-------------TTCEEEEEECSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC--C-------------CCCeEEEEeCCchhHHHHHH
Confidence 46777788889999999999987 46788899999988765321 1 22234445556655 3445
Q ss_pred HHHcCCCCCCEEEEecCCC---------CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH
Q psy1785 329 AAFEGLGSDNVYLIKTDAR---------GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAE 396 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~---------g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~ 396 (629)
+...|++. +++.++++.. +.+|+++|+++|.+. .+.+|++++..|.+|.+.| +++|+++|++
T Consensus 93 ~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~ 166 (379)
T 3ke3_A 93 LEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHS 166 (379)
T ss_dssp HHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHH
T ss_pred HHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHH
Confidence 56666522 6778887542 368999999999642 2446788888999999999 9999999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhc-CCCCcccc
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHS-ASASYLFQ 473 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~-~~~~yl~~ 473 (629)
+|+++++ +.+|.. ... .. +.|+|.+++++||++++|.++|+++++++ ....... ....|...
T Consensus 167 ~~~~li~D~~~~g~~-~~~---------~~----~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~l~~~~~~~~~~~ 231 (379)
T 3ke3_A 167 VGGLLVIDCIASGCV-WLD---------MK----ELGIDVLISAPQKGWSSTPCAGLVMLSAA-AIKKVESTESNCFSLD 231 (379)
T ss_dssp TTCEEEEECTTCTTC-CCC---------HH----HHTCSEEEECTTTTTCSCCCEEEEEECHH-HHHHHHTCCCSCSTTC
T ss_pred cCCEEEEEecccCCc-ccc---------cc----ccCCCEEEecchhhcCCCCceEEEEECHH-HHHhhhcCCCCceeec
Confidence 9999999 443221 111 11 12599999999999999999999999874 3333221 11122211
Q ss_pred CCcCC--CcccCCCCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--CceEE
Q psy1785 474 KDKFY--DTKYDSGDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP--ECTNI 548 (629)
Q Consensus 474 ~~~~~--~~~~~~~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p--~~~~v 548 (629)
..... ...+..+......+-.. .+..+-.+++.+..+|++++.++..+++++|++.|+++ |++++. ++ ..+.+
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~-~~~~~~~~i 309 (379)
T 3ke3_A 232 LKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVA-AEGFEAPGV 309 (379)
T ss_dssp HHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSB-CTTCBCSSE
T ss_pred HHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecC-CccccCceE
Confidence 00000 00000011001112121 33445566776777789999999999999999999998 888765 32 24434
Q ss_pred EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeec----CCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 549 SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPI----HALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 549 ~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~----~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
+....+ . .+ ....+.|.++|......... ....+.||++++ ..+|++|||++++.|++
T Consensus 310 ~~~~~~-~-------~~---------~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~-~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 310 VVSYTE-R-------DD---------MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF-GLDKLTDIDGTVERFEK 371 (379)
T ss_dssp EEEECS-C-------HH---------HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC-SHHHHTCHHHHHHHHHH
T ss_pred EEEccC-C-------cc---------hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC-cCCCHHHHHHHHHHHHH
Confidence 332221 1 01 01135667788653322211 011358999996 88899999999999998
Q ss_pred Hhhc
Q psy1785 625 LGHD 628 (629)
Q Consensus 625 l~~~ 628 (629)
+.++
T Consensus 372 ~l~~ 375 (379)
T 3ke3_A 372 ALDE 375 (379)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 45
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.81 E-value=2.8e-18 Score=180.28 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=202.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH--HHHH
Q psy1785 254 VFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK--LAAF 331 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k--aa~~ 331 (629)
....+..++.+++++++|.+..+.++++|||+++..++..++. |...|+++..+|++... .++.
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~ 111 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--------------PWEAVIATQLGHISTHETGAIEA 111 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--------------TTEEEEEETTSHHHHSSTTHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC--------------CCCEEEEcccchHHHHHHHHHhc
Confidence 3456678888999999998777899999999999988877632 34578888999999887 4778
Q ss_pred cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ec
Q psy1785 332 EGLGSDNVYLIKTDARGRMLPESLRGEIQRTL-AEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 332 lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~-~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~ 405 (629)
.|. +++.+|.+ ++.+|+++|++++.+.. +++..+.+|+.+.. +.+|.+.| +++|+++|+++|+++++ ++
T Consensus 112 ~g~---~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 186 (359)
T 1svv_A 112 TGH---KVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGAR 186 (359)
T ss_dssp TTC---CEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred CCC---eeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccc
Confidence 888 99999986 78999999999997621 12223566766665 67899988 99999999999999999 65
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
.++.+...+. ..+..++..++|++++++||++ .|.++|++++++ +....... +.....
T Consensus 187 ~~~~~~~~~~------~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~-~~~~~~~~----~~~~~~---------- 244 (359)
T 1svv_A 187 LASALSSPVN------DLTLADIARLTDMFYIGATKAG-GMFGEALIILND-ALKPNARH----LIKQRG---------- 244 (359)
T ss_dssp HHHHHTSTTC------CCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSG-GGCTTHHH----HHHHTT----------
T ss_pred hhhhhcCCCc------chhhhhhhhcCCEEEEecccCC-CCCceEEEEEcc-cHHHHHHH----HHhcCC----------
Confidence 3321111110 0010011123899999999985 588889888865 33322110 000000
Q ss_pred CccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 486 ~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
.+...+.+ .... ....+...++++..++..++++++.+.| +.++++++. +...+.+.+.+.
T Consensus 245 -~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~-~~~~~~~~~~~~------------ 305 (359)
T 1svv_A 245 -ALMAKGWL-LGIQ---FEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAW-PSASNQLFPILE------------ 305 (359)
T ss_dssp -CCCTTTHH-HHHH---HHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSS-CCSSSEECBEEE------------
T ss_pred -cccccchh-hHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEcc-CCccceEEEEcC------------
Confidence 00001111 1111 1233556678889999999999999999 567888764 333333333321
Q ss_pred HHHHHhhHHHHHHHHHHhc-CcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 566 FNELLHKVAPKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.++.++|.++ |..+... .....+++|++++ ..++++||+++++.|+++.++
T Consensus 306 ---------~~~~~~l~~~~gi~v~~~--~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 306 ---------NTMIAELNNDFDMYTVEP--LKDGTCIMRLCTS-WATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp ---------HHHHHHHTTTEECEEEEE--ETTTEEEEEEECC-TTCCHHHHHHHHHHHHHC---
T ss_pred ---------HHHHHHHHHhcCEEEEec--ccCCCceEEEEcc-CcCCHHHHHHHHHHHHHHHhc
Confidence 1467788888 8765221 1222368999984 889999999999999987654
No 46
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.81 E-value=6.4e-18 Score=180.80 Aligned_cols=316 Identities=14% Similarity=0.127 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCe-EEEEcCCcchHHHHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRL-VLYTSEDAHYSIKKLAAF 331 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~-vv~~s~~~H~Si~kaa~~ 331 (629)
+.......++.+++++++|.+....++++|+|+++..++.+.+... .+ |.. .|+++..+|+++..+...
T Consensus 59 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~----~~------~gd~~Vl~~~~~~~~~~~~~~~ 128 (400)
T 3vax_A 59 IRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYG----ER------TGRRHIITSAIEHKAVLEPLEH 128 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHH----HH------HTCCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhh----cc------CCCCEEEECccccHhHHHHHHH
Confidence 4445667788999999999987789999999999988887765211 01 233 577888999998877665
Q ss_pred c---CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 332 E---GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 332 l---Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
+ |. +++.||+++++.+|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++
T Consensus 129 ~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~ 199 (400)
T 3vax_A 129 LAGRGF---EVDFLTPGPSGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQG 199 (400)
T ss_dssp HHTTTC---EEEEECCCTTCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTT
T ss_pred HHhcCC---eEEEEccCCCCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhh
Confidence 4 76 899999999999999999998853 467888888999999999999999999999999999 565
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEE-EeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFL-TRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll-~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
...... ... .. +|+++.++||+ ++|.++|+++ ++++.+....... ..++.....
T Consensus 200 ~~~~~~---------~~~----~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~--------- 254 (400)
T 3vax_A 200 YGKVPG---------DLT----TP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPL-EPIMFGGGQ--------- 254 (400)
T ss_dssp TTTSGG---------GGG----SC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCC-CCSSCSSCT---------
T ss_pred cCCCCc---------Chh----hc-CcEEEEeHHHh-CCCCceEEEEEecchhcccccccc-CceecCCCc---------
Confidence 432211 111 23 79999999995 4588899999 8874333110000 111111000
Q ss_pred CccCCCC-CCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC---ceEEEEEeeCCCCCCC
Q psy1785 486 DKHIQCG-RKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE---CTNISFWYIPPSLRGK 560 (629)
Q Consensus 486 ~~~~~~s-r~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~---~~~v~F~~~p~~~~~~ 560 (629)
......+ ... ....+..+++.+ .++++++.++..++++++.+.|+ .+++++.. ++. .+.+.|+... .
T Consensus 255 ~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~~~~~~~~~~--~--- 326 (400)
T 3vax_A 255 ERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNG-DQDHVVPHILNLSFED--V--- 326 (400)
T ss_dssp GGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECS-CTTSBCTTEEEEECTT--C---
T ss_pred eeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeC-CcccCCCCEEEEEeCC--C---
Confidence 0001111 111 222233344432 45788999999999999999999 88999875 332 2466776431 1
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeec-------CCc-----cceEEEee-cCCCCCHHHHHHHHHHHHHHhh
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPI-------HAL-----PNFFRLVL-QNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~-------~~~-----~~~lR~~~-~n~~~t~edid~l~~~i~~l~~ 627 (629)
+..++.+.| . ...+...|..+...... -+. .+++|+++ . ..+|++|++++++.|+++.+
T Consensus 327 -~~~~l~~~L-----~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~-~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 327 -DAEAFLVTL-----K-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTP-GQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp -CHHHHHHHH-----H-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEE-C-------------------
T ss_pred -CHHHHHHHH-----h-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccC-CCCCHHHHHHHHHHHHHHhc
Confidence 111221111 1 33344455443221100 010 26899999 6 88999999999999998765
Q ss_pred c
Q psy1785 628 D 628 (629)
Q Consensus 628 ~ 628 (629)
+
T Consensus 399 ~ 399 (400)
T 3vax_A 399 S 399 (400)
T ss_dssp -
T ss_pred c
Confidence 4
No 47
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.81 E-value=3.7e-19 Score=188.32 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=206.9
Q ss_pred HHHHHHHH-HHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC
Q psy1785 258 MEEHVLAQ-MRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336 (629)
Q Consensus 258 ~E~~~~~~-l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~ 336 (629)
...++.++ +++++|.+ ..++++|+|+++..++.+.. .|...|+++..+|++...++...|+
T Consensus 54 ~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~~--------------~~gd~vl~~~~~~~~~~~~~~~~g~-- 115 (371)
T 2e7j_A 54 PIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA--------------KKDAWVVMDENCHYSSYVAAERAGL-- 115 (371)
T ss_dssp CHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC--------------CTTCEEEEETTCCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHHh--------------CCCCEEEEccCcchHHHHHHHHcCC--
Confidence 34677788 99999987 88999999999988877652 1445688889999999999999998
Q ss_pred CCEEEEe--cCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccc
Q psy1785 337 DNVYLIK--TDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLT 412 (629)
Q Consensus 337 ~~v~~V~--~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~ 412 (629)
+++.+| .++++.+|+++|+++|.+..++ ..+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++......
T Consensus 116 -~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~ 193 (371)
T 2e7j_A 116 -NIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV 193 (371)
T ss_dssp -EEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCC
T ss_pred -eEEEeecccCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCC
Confidence 999999 8888999999999999754321 3467788899999999999999999999999999999 666543211
Q ss_pred ccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhh-hhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 413 APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTE-CHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 413 ~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~-~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
. .. +.++|+++.++||++++|.++|+++++++ .... .......+... ...+.
T Consensus 194 ~---------~~----~~~~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~ 246 (371)
T 2e7j_A 194 S---------LK----EIGADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKE-------------VELLG 246 (371)
T ss_dssp C---------HH----HHTCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSB-------------GGGTT
T ss_pred C---------hh----hcCCCEEEecCCcCCCCCCCcEEEEEech-hhhhhccccccCcccc-------------ccccc
Confidence 1 11 11489999999999999999999999774 3332 21111111100 00011
Q ss_pred -CCCc-chHHHHHHHHhcChhhHHHHHHHH--HHHHHHHHHHHhcCCCcEEEccCC--CceEEEEEeeCCCCCCCCchhh
Q psy1785 492 -GRKP-DVLKFWFMWKAKGTDGLEAHIDKS--FDNAKYFTDKIRHRPGFKLVLDEP--ECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 492 -sr~~-~al~~w~~l~~~G~~G~~~~~~~~--~~la~~l~~~L~~~~g~~l~~~~p--~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
+... ....+..+++.+.. +..++. .++++++.+.|++. +++++. ++ ..+.++|++. .
T Consensus 247 ~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~--~--------- 309 (371)
T 2e7j_A 247 CTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLG-DNPHNHDLMFFHAE--V--------- 309 (371)
T ss_dssp CCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEES-SSSCCSSEEEEECH--H---------
T ss_pred CCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEec-CCCccCceEEEECC--C---------
Confidence 1111 22333344444322 456666 78999999999998 999875 32 4556666542 0
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeee--ec--CC-ccceEE-EeecCCC-CCHHHHHHHHHHHHHHhhcC
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQ--PI--HA-LPNFFR-LVLQNSA-LDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~--~~--~~-~~~~lR-~~~~n~~-~t~edid~l~~~i~~l~~~l 629 (629)
..++.+.|.+.|... ... .. .+ ..+++| +++. .. +|++|++++++.|+++.+++
T Consensus 310 --------~~~~~~~l~~~gi~~-~~~~~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 310 --------LYEISKKAKGGRFFL-YRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp --------HHHHHHHSSSGGGHH-HHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHCCEEE-EeccccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHHHhc
Confidence 124555666666432 110 01 01 135899 9996 66 89999999999999887653
No 48
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.80 E-value=1e-18 Score=185.41 Aligned_cols=302 Identities=14% Similarity=0.065 Sum_probs=200.7
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCC-CCeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQG-GDGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL 328 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka 328 (629)
.++.+..+-.++++.+++++|.++ .+.+| |+|||+++..++.... . | ....+|+++...|.++ +.
T Consensus 44 r~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~--------~---~~~~~i~~~~~~~~~~-~~ 110 (361)
T 3m5u_A 44 RTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-L--------N---GVCEYANTGVWTKKAI-KE 110 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-C--------S---SCEEEEECSHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-C--------C---CeEEEEeCCHHHHHHH-HH
Confidence 356677888899999999999975 47888 9999999887776432 1 2 1223566666666544 44
Q ss_pred HHHcCCCCCCEEEEecCCCCC--CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE-ec
Q psy1785 329 AAFEGLGSDNVYLIKTDARGR--MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV-TW 405 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~--~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV-A~ 405 (629)
++..|+ +|..|+++++|. ++++. + |.+ .+.+|..++..|++|.+.|. +++ +|+++|| +.
T Consensus 111 a~~~G~---~v~~~~~~~~g~~~~~~~~-~--l~~------~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~ 172 (361)
T 3m5u_A 111 AQILGV---NVKTVASSEESNFDHIPRV-E--FSD------NADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDAS 172 (361)
T ss_dssp HHHTTC---CEEEEEECTTTTSCSCCCC-C--CCT------TSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECG
T ss_pred HHHcCC---ceEEEecccCcCCCcCChh-h--cCC------CCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcc
Confidence 556687 999999998885 56665 3 432 35568889999999998552 333 4999999 43
Q ss_pred Cc-cccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhc-CCCCccccCCcCCCcccC
Q psy1785 406 NP-HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHS-ASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 406 gg-~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~-~~~~yl~~~~~~~~~~~~ 483 (629)
.. +....+ ++. +|.+++++|||+| |.|+|++++|++ .+..... ..+.|+..... ..
T Consensus 173 q~~g~~~id--------------~~~-~d~~~~s~~K~~g-p~G~g~l~~~~~-~~~~~~~~~~p~~~~~~~~-----~~ 230 (361)
T 3m5u_A 173 SDFFSRKVD--------------FSN-IALFYGGVQKNAG-ISGLSCIFIRKD-MLERSKNKQIPSMLNYLTH-----AE 230 (361)
T ss_dssp GGTTSSCCC--------------CTT-EEEEEEETTTTSS-CTTCEEEEEEHH-HHHHHHTCCCCGGGCHHHH-----HH
T ss_pred cccCCCCCC--------------ccc-CCEEEEechhccC-CCccEEEEEcHH-HHhhhcCCCCCceeehHHH-----hh
Confidence 22 222221 344 8999999999996 999999999985 3333211 12233210000 00
Q ss_pred CCCccCCCCCC-cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCc-EEEccCC--C-ceEEEEEeeC-CC
Q psy1785 484 SGDKHIQCGRK-PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGF-KLVLDEP--E-CTNISFWYIP-PS 556 (629)
Q Consensus 484 ~~~~~~~~sr~-~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~-~l~~~~p--~-~~~v~F~~~p-~~ 556 (629)
.+ ....+-. ..++.+-.+++.+-.+ |++++.++..+++++|++.|++++|+ ++.. ++ . ..+++|.+.. ..
T Consensus 231 ~~--~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~-~~~~rs~~ivsf~~~~~~~ 307 (361)
T 3m5u_A 231 NQ--SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHA-DKKDRSLMNVSFNIAKNKD 307 (361)
T ss_dssp TT--TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESS-CGGGBCSSEEEEEESSCTT
T ss_pred cC--CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccC-CHHHcCCeEEEEECCCchh
Confidence 00 0001111 2456667778877777 89999999999999999999999777 6544 22 2 3578998742 11
Q ss_pred CCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 557 LRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
++ ..+...|.++|..... .... ...+|++++ .++|++|||++++.|+++.++
T Consensus 308 -------------~~---~~~~~~L~~~gI~~~~--g~~~-~g~iRiS~~-~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 308 -------------LE---PLFVKEAEEAGMIGLK--GHRI-LGGIRASIY-NALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp -------------HH---HHHHHHHHHTTEECCB--CCTT-TCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------hh---HHHHHHHHHCCCEEec--CCCc-cCeEEEEcc-CCCCHHHHHHHHHHHHHHHHh
Confidence 11 2455677778854211 1111 235999997 889999999999999998653
No 49
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.79 E-value=2.7e-17 Score=177.05 Aligned_cols=309 Identities=14% Similarity=0.167 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH----Hc
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA----FE 332 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~----~l 332 (629)
....++.+++++++|.+....++++|+|+++..++.+++... ...+.| .-+|+++...|.+...+.. ..
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~--~~~~~g-----d~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQ--ATRSPE-----RRVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHH--HHHSTT-----CCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccc--cccCCC-----CcEEEEcCCCCCchHHHHHHHHHHh
Confidence 344677889999999976788999999988777777654210 000112 2367778889998665433 33
Q ss_pred --CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 333 --GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 333 --Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
|. +++.||. +++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.+
T Consensus 144 ~~g~---~~~~v~~-------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g 207 (416)
T 1qz9_A 144 QQGY---TLRLVDS-------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAG 207 (416)
T ss_dssp CSSC---EEEEESS-------GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cCCc---eEEEeCc-------HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEcccccc
Confidence 77 8888886 6678777742 467888999999999999999999999999999999 55532
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCCCCCCcc-EEEEEeccchhhhhhcCCCCccccCCcC-CCcccCC--
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQC-SVFLTRHQSVLTECHSASASYLFQKDKF-YDTKYDS-- 484 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~-g~ll~r~~~~l~~~~~~~~~yl~~~~~~-~~~~~~~-- 484 (629)
.... ... +.++|++++++||+++.+.++ |+++++++ ...........|....... ....+..
T Consensus 208 ~~~~---------~~~----~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~~~~ 273 (416)
T 1qz9_A 208 AVPV---------DLH----QAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYEPSN 273 (416)
T ss_dssp TSCC---------CHH----HHTCSEEEECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCCBCS
T ss_pred CcCC---------Chh----hcCCCEEEecCcccCCCCCCCeEEEEECHH-HHhccCCCccccCccccccCCCCccCCCc
Confidence 2211 111 114899999999998777777 99998764 3322211111111110000 0000000
Q ss_pred CCccCCCC-CCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC-C--CcEEEccCC----CceEEEEEeeCC
Q psy1785 485 GDKHIQCG-RKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR-P--GFKLVLDEP----ECTNISFWYIPP 555 (629)
Q Consensus 485 ~~~~~~~s-r~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~-~--g~~l~~~~p----~~~~v~F~~~p~ 555 (629)
.......+ ... ....++.+++.+..++++++.++..++++++.+.|++. | |++++. ++ ..+.++|++..
T Consensus 274 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~- 351 (416)
T 1qz9_A 274 GIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVT-PREHAKRGSHVSFEHPE- 351 (416)
T ss_dssp SGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECS-CSSGGGBCSEEEEECTT-
T ss_pred chHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeC-CCCHHHcCCEEEEecCC-
Confidence 00111121 121 34456677777777889999999999999999999985 6 898765 32 34566665420
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.+.|.++|.. +.. .+ .+++|+++.+..+|++||+++++.|+++.+
T Consensus 352 ------------------~~~l~~~l~~~gi~-~~~---~~-~~~lRis~~~~~~t~~~i~~~~~~l~~~~~ 400 (416)
T 1qz9_A 352 ------------------GYAVIQALIDRGVI-GDY---RE-PRIMRFGFTPLYTTFTEVWDAVQILGEILD 400 (416)
T ss_dssp ------------------HHHHHHHHHTTTEE-CEE---ET-TTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHhCCcE-ecc---CC-CCeEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence 13567788888853 221 12 358999996348999999999999988754
No 50
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.77 E-value=2.2e-17 Score=178.85 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=205.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCC------CC-CCeEEEEcCCcchH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA------SC-PRLVLYTSEDAHYS 324 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~------~~-p~~vv~~s~~~H~S 324 (629)
++.......++.+++++++|.+..+.++++|+|+++..++.+..+.......+.|-. .. ....|+++..+|.|
T Consensus 56 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s 135 (432)
T 3a9z_A 56 GRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS 135 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh
Confidence 444566778999999999999767899999999999988887753211000011200 00 11368889999999
Q ss_pred HHHHHHH----cCCCCCCEEEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcC-
Q psy1785 325 IKKLAAF----EGLGSDNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD- 398 (629)
Q Consensus 325 i~kaa~~----lGlg~~~v~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~- 398 (629)
+.++... .|. +++.||+++ +|.+|+++|+++|.+ .+.+|+.+..++.+|.+.|+++|.++|++++
T Consensus 136 ~~~~~~~~~~~~g~---~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~ 206 (432)
T 3a9z_A 136 IRLPLEHLVEDQVA---EVTFVPVSKVNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPISEISRRIKALNQ 206 (432)
T ss_dssp HHHHHHHHHHTTSC---EEEEECCCTTTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc---EEEEEecCcccCCcCHHHHHHhccC------CceEEEEECcccCcccccCHHHHHHHHHhcCc
Confidence 8776543 477 899999986 789999999988853 3668888999999999999999999999999
Q ss_pred ---------CeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC
Q psy1785 399 ---------MADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS 467 (629)
Q Consensus 399 ---------~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~ 467 (629)
+++++ +++.+... . ... ..++|++++++||+++ |. +|+++++++..... ..
T Consensus 207 ~~~~~~~~~~~livDea~~~~~~~---~------~~~----~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~---~~ 268 (432)
T 3a9z_A 207 IRAASGLPRVLVHTDAAQALGKRR---V------DVE----DLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTP---LY 268 (432)
T ss_dssp HHHHHTCCCCEEEEECTTTTTTSC---C------CHH----HHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBC---CC
T ss_pred ccccccCCceEEEEEchhhhCCcc---c------Chh----hcCCCEEEEehhHhcC-Cc-ceEEEEccccccCC---cC
Confidence 99999 66543211 1 111 1148999999999986 76 99999976421111 11
Q ss_pred CCccccCCcCCCcccCCCCccCC-CCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--
Q psy1785 468 ASYLFQKDKFYDTKYDSGDKHIQ-CGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-- 543 (629)
Q Consensus 468 ~~yl~~~~~~~~~~~~~~~~~~~-~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-- 543 (629)
+.|. .... ....+ ++... ....+..+++.+ .++++++.++..++++++.+.|++++|+++....|
T Consensus 269 ~~~~-~~~~---------~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 337 (432)
T 3a9z_A 269 PMLF-GGGQ---------ERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFP 337 (432)
T ss_dssp CSCC-SSCG---------GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCT
T ss_pred ceee-cCCc---------cccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCC
Confidence 1111 1100 00011 11111 223333445543 35788999999999999999999876765542112
Q ss_pred ---Cc-eEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHH----HhcCcEEEeee------e--cCCc-----cceEE
Q psy1785 544 ---EC-TNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERM----MKSGSMMITYQ------P--IHAL-----PNFFR 602 (629)
Q Consensus 544 ---~~-~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l----~~~G~~~i~~~------~--~~~~-----~~~lR 602 (629)
.. +.++|.+...+.. . ..+.+.+ .+.|..+.... . ..|. .+++|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~----~-----------~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iR 402 (432)
T 3a9z_A 338 GVERLPNTCNFSIQGSQLR----G-----------YMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVR 402 (432)
T ss_dssp TCCBCTTEEEEEECSTTCC----H-----------HHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEE
T ss_pred cccCCCCEEEEEeCCCCCc----H-----------HHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEE
Confidence 12 3677776431110 1 1122222 11221110000 0 0011 25899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 603 LVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 603 ~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+++. ..+|++|++++++.|+++.++
T Consensus 403 is~~-~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 403 LSVG-RSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp EECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred EEcC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9996 889999999999999887543
No 51
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.77 E-value=1.7e-17 Score=175.73 Aligned_cols=307 Identities=9% Similarity=0.037 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..++++|||+++..++.+.+.+ . .|...|+++..+|.+...++...|+ ++
T Consensus 35 ~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~-~----------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 98 (375)
T 2fnu_A 35 LLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEF-S----------ADRNEIITTPISFVATANMLLESGY---TP 98 (375)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCC-C----------TTSCEEEECSSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhccc-C----------CCCCEEEECCCccHhHHHHHHHCCC---EE
Confidence 56667788999886 7899999999998887765210 0 1445688899999999999999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.+++++++.+|+++|+++|.+ .+.+|+.+.. +|.+.|+++|.++|+++|+++++ +++.+.....
T Consensus 99 ~~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~---- 165 (375)
T 2fnu_A 99 VFAGIKNDGNIDELALEKLINE------RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQN---- 165 (375)
T ss_dssp EECCBCTTSSBCGGGSGGGCCT------TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETT----
T ss_pred EEeccCCCCCCCHHHHHhhcCc------CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECC----
Confidence 9999998889999999888753 2444555443 89999999999999999999999 5554332211
Q ss_pred ccccccccc-ccCCcceEEEeCCCCCCCCCCccEEEEEe-ccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC--
Q psy1785 418 SVFLTRRNY-VIEVVADSVTWNPHKLLTAPQQCSVFLTR-HQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR-- 493 (629)
Q Consensus 418 ~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P~~~g~ll~r-~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr-- 493 (629)
+.+ .... +++.++++||+++ | |+|.++++ ++++......... +-.. +.. ...+... ..+.
T Consensus 166 ------~~~~~~~~-i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~----~~~~~~ 229 (375)
T 2fnu_A 166 ------KKVGGFAL-ASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFRS-HGML-KKD-FFEGEVK----SIGHNF 229 (375)
T ss_dssp ------EETTSSSS-EEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTB-TTEE-ESS-SSCEEES----SCCCBC
T ss_pred ------eeccccCC-eEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHHh-cCCc-ccc-ccccccc----cccccC
Confidence 111 1123 7888999999995 5 78888885 3444332211100 0000 000 0000000 1111
Q ss_pred CcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC-C---CceEEEEEeeCCCCCCCCchhhHHHH
Q psy1785 494 KPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE-P---ECTNISFWYIPPSLRGKEDQADFNEL 569 (629)
Q Consensus 494 ~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~-p---~~~~v~F~~~p~~~~~~~~~~~~~~~ 569 (629)
....+...+.+. ..++++++.++..++++++.+.|++++++++..++ . ....+.+.+.+.+. .
T Consensus 230 ~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-- 296 (375)
T 2fnu_A 230 RLNEIQSALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF---------T-- 296 (375)
T ss_dssp CCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG---------G--
T ss_pred CCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcccc---------c--
Confidence 223333333332 35688899999999999999999999899876521 1 11223344321100 0
Q ss_pred HhhHHHHHHHHHHhcCcEEEe-eeecC-----C-------c-------cceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 570 LHKVAPKIKERMMKSGSMMIT-YQPIH-----A-------L-------PNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~-~~~~~-----~-------~-------~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
-..++.+.|.++|..... +.+.. + . .+++|+++. +.+|++||+++++.|+++.++
T Consensus 297 ---~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 297 ---CKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCH-ANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp ---GHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 013567788888854321 11110 0 0 158999995 899999999999999987653
No 52
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.77 E-value=8.7e-18 Score=194.52 Aligned_cols=309 Identities=13% Similarity=0.089 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.+..+.+++++|.+. ..++++|+|.+|..++.+.. .|...|+++..+|+|+..++...|. ++
T Consensus 208 ~~~ee~la~l~G~d~-~i~~~~Gtt~a~~~~i~al~--------------~~GD~Vlv~~~~h~s~~~~~~~~G~---~~ 269 (755)
T 2vyc_A 208 GESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACM--------------TDNDVVVVDRNCHKSIEQGLMLTGA---KP 269 (755)
T ss_dssp HHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC--------------CTTCEEEEESSCCHHHHHHHHHHCC---EE
T ss_pred HHHHHHHHHHhCCCc-eEEECCcHHHHHHHHHHHhc--------------CCCCEEEECCCchHHHHHHHHHcCC---EE
Confidence 455677999999863 34566666777777766542 1455788899999999999999998 89
Q ss_pred EEEecCCC-----CCC-----CHHHHHHHHHHH----HhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--
Q psy1785 340 YLIKTDAR-----GRM-----LPESLRGEIQRT----LAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV-- 403 (629)
Q Consensus 340 ~~V~~d~~-----g~~-----d~~~Le~~i~~~----~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV-- 403 (629)
+.++.+.+ |.+ |+++|+++|++. .+++..|.+|+++.+ |.+|.+.|+++|+++|+++++++||
T Consensus 270 v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 270 VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp EEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEEC
T ss_pred EEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEEC
Confidence 99988643 456 999999999762 123445556777765 7899999999999999999999999
Q ss_pred ecCcccccccccccccccccccc-ccCCc--ceE------EEeCCCCCCCCCCccEEEEEeccc-hhh-hhhcCCCCccc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNY-VIEVV--ADS------VTWNPHKLLTAPQQCSVFLTRHQS-VLT-ECHSASASYLF 472 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~-~i~~g--aDs------v~~~~HK~l~~P~~~g~ll~r~~~-~l~-~~~~~~~~yl~ 472 (629)
||+++..+.+ .+++. .+ .| +|. ++.++||++++|.++|++++++.. .+. ..+.. ++.
T Consensus 349 A~~~~~~~~~--------~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~---~~~ 416 (755)
T 2vyc_A 349 AWYGYARFNP--------IYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ---AYM 416 (755)
T ss_dssp TTCTTGGGCG--------GGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHH---HHH
T ss_pred cCchhcccCc--------ccCCcchh-cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHH---HHH
Confidence 8887654433 11111 12 34 676 999999999999999999998751 110 11000 000
Q ss_pred cCCcCCCcccCCCCccCCCCCCc--chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCC---------cEEEcc
Q psy1785 473 QKDKFYDTKYDSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG---------FKLVLD 541 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~sr~~--~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g---------~~l~~~ 541 (629)
.++.+... ....+-.+++.+..+|.++++++..+++++++++|+++++ |+++.
T Consensus 417 ---------------~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~- 480 (755)
T 2vyc_A 417 ---------------MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWN- 480 (755)
T ss_dssp ---------------HTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESS-
T ss_pred ---------------HhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccC-
Confidence 01122222 2344555666666676788999999999999999999888 87765
Q ss_pred CCCc-------------------------------------------------eEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 542 EPEC-------------------------------------------------TNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 542 ~p~~-------------------------------------------------~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
++.. ..|+|...+.+.+|.-.+..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~------ 554 (755)
T 2vyc_A 481 KEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGV------ 554 (755)
T ss_dssp CSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCC------
T ss_pred chhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCC------
Confidence 2211 244555433233331000000
Q ss_pred HHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 573 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 573 ~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
-...+.+.|.+.|.. +... + .+.+|++++ +.+|++++++|+++|+++.+
T Consensus 555 ~~~~l~~~L~~~gI~-~e~~---~-~~~v~~~~~-~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 555 PAALVTAWLGRHGIV-PTRT---T-DFQIMFLFS-MGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp CHHHHHHHHHTTTCC-CSEE---C-SSEEEEECC-TTCCTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCE-Eeec---C-CCeEEEEEC-CCCCHHHHHHHHHHHHHHHH
Confidence 012456677777742 2211 2 357999995 99999999999999998754
No 53
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.77 E-value=1.3e-16 Score=172.96 Aligned_cols=300 Identities=15% Similarity=0.117 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~ 336 (629)
....++.+++++++|.+ ..+++.+|+++|..++.+.. .|...|++....|.++..+++..|.
T Consensus 109 ~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~--------------~~gd~vl~~~~~h~~~~~~~~~~g~-- 170 (427)
T 2w8t_A 109 HDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA--------------GKGEYVILDADSHASIYDGCQQGNA-- 170 (427)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS--------------CTTCEEEEETTCCHHHHHHHHHSCS--
T ss_pred HHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc--------------CCCCEEEECCcccHHHHHHHHHcCC--
Confidence 45567778889999875 57888889998887766531 1345678889999999999999987
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+++.+| .+|+++|+++|.+.. . ..+.+|+.....+.+|.+.|+++|+++|++||+++++ +++.+.+-..
T Consensus 171 -~~~~~~-----~~d~~~le~~l~~~~-~-~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~- 241 (427)
T 2w8t_A 171 -EIVRFR-----HNSVEDLDKRLGRLP-K-EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPN- 241 (427)
T ss_dssp -EEEEEC-----TTCHHHHHHHHHTSC-S-SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTT-
T ss_pred -eeEEeC-----CCCHHHHHHHHHhcc-C-CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCC-
Confidence 888887 379999999886521 1 1456777777778999999999999999999999999 7766543210
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
.-+ +... +++..++|+++.++||+++.| + |+++.++ ++..........|.+ .++-.
T Consensus 242 -g~~-~~~~--~~~~~~~di~~~s~sK~~g~~-g-G~v~~~~-~l~~~l~~~~~~~~~-----------------~~~~~ 297 (427)
T 2w8t_A 242 -GRG-VYEA--QGLEGQIDFVVGTFSKSVGTV-G-GFVVSNH-PKFEAVRLACRPYIF-----------------TASLP 297 (427)
T ss_dssp -SCC-HHHH--TTCTTCCSEEEEESSSTTCSC-C-EEEEECC-TTGGGGGGTCHHHHS-----------------SCCCC
T ss_pred -CCc-hHhh--cCCCcCCcEEEecchhhhccC-C-CEEEeCH-HHHHHHHHhcccccc-----------------cCCCC
Confidence 000 0010 123334899999999999843 3 7777654 444332111111211 11111
Q ss_pred -cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-CceEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 495 -PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-ECTNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 495 -~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-~~~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
.....+..+++.+. .++++.++..+++++|.+.|++. |+++.. ++ ..+.+.+.+.. . .
T Consensus 298 ~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~--------~--------~ 357 (427)
T 2w8t_A 298 PSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGT-ETCDSAIVAVMLED--------Q--------E 357 (427)
T ss_dssp HHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESC-SSCCSSEEEEEESS--------H--------H
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccC-CCCCCCEEEEEECC--------H--------H
Confidence 22333344555543 25678888899999999999988 888764 34 55666666521 0 0
Q ss_pred HHHHHHHHHHhcCcEEEeeeec--CCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 573 VAPKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 573 ~~~~i~~~l~~~G~~~i~~~~~--~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
...++.++|.++|..+...... ....+++|++++ ..+|++||+++++.|+++.++
T Consensus 358 ~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 358 QAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp HHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence 1236778888888654322211 111258999996 889999999999999887543
No 54
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.77 E-value=8.7e-17 Score=171.25 Aligned_cols=309 Identities=12% Similarity=0.046 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVGF--QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~--~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+++++.+++++.+|+ +....++++|+|+++..++.+.. .|...|++...+|.++..++...
T Consensus 64 ~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--------------~~gd~vl~~~~~~~~~~~~~~~~ 129 (391)
T 3dzz_A 64 PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--------------SPGDQILVQEPVYNMFYSVIEGN 129 (391)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--------------CTTCEEEECSSCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--------------CCCCeEEECCCCcHHHHHHHHHc
Confidence 467788889999999994 44688999999999887776642 13456788999999999999999
Q ss_pred CCCCCCEEEEecC-CCC--CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE--e
Q psy1785 333 GLGSDNVYLIKTD-ARG--RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV--T 404 (629)
Q Consensus 333 Glg~~~v~~V~~d-~~g--~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV--A 404 (629)
|. +++.+|.+ +++ .+|+++|+++|.+ ..+.+|+.+...+.+|.+ +++++|+++|+++|+++++ +
T Consensus 130 g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 201 (391)
T 3dzz_A 130 GR---RVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEI 201 (391)
T ss_dssp TC---EEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CC---EEEEeeeeecCCceeecHHHHHHHHhc-----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecc
Confidence 98 99999986 233 4999999999863 146677778888999999 8899999999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcce--EEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVAD--SVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaD--sv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
++........ .. ....++.+. .| .++.++||+++ ....+|+++++++.+....... ....
T Consensus 202 ~~~~~~~g~~--~~---~~~~~~~~~-~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~----~~~~------- 264 (391)
T 3dzz_A 202 HGDLVLTDED--IT---PAFTVDWDA-KNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEES----FFLA------- 264 (391)
T ss_dssp TTTCBCSSCC--CC---CGGGSCTTT-GGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHH----HHHH-------
T ss_pred cccccCCCCC--ce---ehhhcCccc-cCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHH----HHhh-------
Confidence 6654432110 00 011111112 45 89999999997 4466888888755544332110 0000
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCCC
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLRG 559 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~~ 559 (629)
+..+........+..++.. +.+.+++..++..++++++.+.|++ +|++++.. |..+.+. +.+...+..
T Consensus 265 ------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 334 (391)
T 3dzz_A 265 ------GIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD--SNASYLAWVDISALGMN- 334 (391)
T ss_dssp ------TCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC--CCBSSEEEEECGGGCSC-
T ss_pred ------ccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec--cCceEEEEEehhhcCCC-
Confidence 0001112233344444443 5566888889999999999999999 89998764 4444333 333211111
Q ss_pred CCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 560 KEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
..++.++|. +.|..+....... ...+++|++++ +++++|+.+++.|+++.+++
T Consensus 335 --------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 335 --------------AEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA---CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp --------------HHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC---SCHHHHHHHHHHHHHHHHTC
T ss_pred --------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 135677775 7886543322221 12368999985 58999999999999887653
No 55
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.76 E-value=1.6e-18 Score=185.49 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=190.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCC-CCeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCe-EEEEcCCcchHHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQG-GDGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRL-VLYTSEDAHYSIKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~-~~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~-vv~~s~~~H~Si~ka 328 (629)
++.+..+-+++++.+++++|.++ .+.+| |+|||+++..++..... .| .+. ++.++...|.++ +.
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~--------~g----d~v~~~~~~~~~~~~~-~~ 133 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLG--------DK----TTADYVDAGYWAASAI-KE 133 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCT--------TC----CEEEEEESSHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccC--------CC----CeEEEEeCCHHHHHHH-HH
Confidence 45556666888999999999975 46888 68999998877764421 12 122 233323333222 22
Q ss_pred HHHcCCCCCCEEEEecC--CCCC-CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHcCCeEEE-
Q psy1785 329 AAFEGLGSDNVYLIKTD--ARGR-MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF-DPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d--~~g~-~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i-dpl~ei~~i~~~~~~~lhV- 403 (629)
++. .| +|..|+++ +.|. +|+++++.+|.+ .+.+|..+...|++|.+ +||++|+ +|+++||
T Consensus 134 a~~--~G--~v~~v~~~~~~~G~~~~~~~~~~~l~~------~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vD 198 (386)
T 3qm2_A 134 AKK--YC--APQIIDAKITVDGKRAVKPMREWQLSD------NAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTAD 198 (386)
T ss_dssp HTT--TS--EEEEEECEEEETTEEEECCGGGCCCCT------TCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEE
T ss_pred HHH--hC--CeEEEecCcccCCCCCCchHHHhhcCC------CCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEE
Confidence 222 34 69999998 6786 888877766643 34568889999999995 9999986 7999999
Q ss_pred ec-CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 TW-NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 A~-gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
+. +.+....+ ++. .|.+++++|||+| |.|+|++++|++ .+.......+.++. +....
T Consensus 199 a~qs~g~~pid--------------v~~-~~~~~~s~hK~lG-P~G~g~l~v~~~-~~~~~~~~~p~~~~-----~~~~~ 256 (386)
T 3qm2_A 199 FSSTILSAPLD--------------VSR-YGVIYAGAQKNIG-PAGLTLVIVRED-LLGKAHESCPSILD-----YTVLN 256 (386)
T ss_dssp CTTTTTSSCCC--------------GGG-CSEEEEETTTTTC-CTTEEEEEEEGG-GCSCCCTTSCGGGC-----HHHHH
T ss_pred cccccCCCCCC--------------ccc-cCEEEEecccccC-CCccEEEEECHH-HHhhhcccCCcHHH-----HHHHh
Confidence 43 22222221 222 3457799999996 999999999985 33322111222221 00000
Q ss_pred CCCCccCCCCCC-cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCc-EEEcc-CCCc-eEEEEEeeCCCC
Q psy1785 483 DSGDKHIQCGRK-PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGF-KLVLD-EPEC-TNISFWYIPPSL 557 (629)
Q Consensus 483 ~~~~~~~~~sr~-~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~-~l~~~-~p~~-~~v~F~~~p~~~ 557 (629)
..+.. ..+-. +.++.+-.+++.+-.+ |++++.++..+++++|++.|+++ ++ ....+ +... .+++|.+...+
T Consensus 257 ~~~~~--~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~- 332 (386)
T 3qm2_A 257 DNDSM--FNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNT- 332 (386)
T ss_dssp HC---------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGG-
T ss_pred hcCCC--CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcc-
Confidence 00000 01111 2466777778877777 89999999999999999999998 65 32221 1233 58899874211
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
++ ..+...|.++|..... ..... ..+|+++. ..+|++|||+|++.|+++.++
T Consensus 333 ------------~~---~~~~~~L~~~gI~~~~--g~~~~-~~iRiS~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 ------------LD---KVFLEESFAAGLHALK--GHRVV-GGMRASIY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ------------GH---HHHHHHHHHTTEECCB--CCTTT-CSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------cc---HHHHHHHHHCCCEEeC--CCCCc-CeEEEEcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 11 2455567778853211 11111 35999996 899999999999999998753
No 56
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.76 E-value=6.5e-17 Score=172.76 Aligned_cols=301 Identities=15% Similarity=0.142 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
...++.+++++++|.+ ..+++.+||+++..++.+.. .|...|++...+|.++..+++..|.
T Consensus 89 ~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~l~~~~--------------~~gd~v~~~~~~~~~~~~~~~~~g~--- 149 (399)
T 3tqx_A 89 IHKELEKDISEFLGTD--DTILYSSCFDANGGLFETLL--------------GPEDAIISDELNHASIIDGIRLCKA--- 149 (399)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC--------------CTTCEEEEETTCCHHHHHHHHSCCS---
T ss_pred HHHHHHHHHHHHHCCC--cEEEECchHHHHHHHHHHhc--------------CCCCEEEECCcccHHHHHHHHHcCC---
Confidence 3466677888899876 46777778988876665431 2455788899999999999999998
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccc
Q psy1785 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQ 415 (629)
Q Consensus 338 ~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~ 415 (629)
+++.+|. +|+++|++.+.+...++..+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.+.. ...
T Consensus 150 ~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~- 222 (399)
T 3tqx_A 150 QRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFI-GEN- 222 (399)
T ss_dssp EEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-STT-
T ss_pred ceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccccc-CCC-
Confidence 8888885 578899999988766555677888888899999999999999999999999999 6653221 110
Q ss_pred cccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCC-CC
Q psy1785 416 QCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCG-RK 494 (629)
Q Consensus 416 ~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s-r~ 494 (629)
..+ .+.. .++..+.|+++.++||+++++.+ |+++.++ ............|... ++ ..
T Consensus 223 ~~~-~~~~--~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~ 280 (399)
T 3tqx_A 223 GRG-TPEY--CGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFS-----------------NTVAP 280 (399)
T ss_dssp SCC-HHHH--HTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSS-----------------CCCCH
T ss_pred CCc-hHHh--hCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCcceecc-----------------CCCcH
Confidence 000 0011 12222379999999999995544 6666654 4444322211122110 11 11
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHH
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVA 574 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~ 574 (629)
.....+..+++... +++++..++..++++++.+.|++. |+++. ++..+.+.+.+... . ..
T Consensus 281 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~---------~-------~~ 340 (399)
T 3tqx_A 281 VIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV--PGNHPIIPVMLGDA---------Q-------LA 340 (399)
T ss_dssp HHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCSSSEEEEEEECH---------H-------HH
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEeCCH---------H-------HH
Confidence 12233344444332 667888999999999999999987 88765 35666666665310 0 12
Q ss_pred HHHHHHHHhcCcEEEeeeec---CCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 575 PKIKERMMKSGSMMITYQPI---HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 575 ~~i~~~l~~~G~~~i~~~~~---~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.++.++|.++|..+.. ... ....+++|++++ ..+|++|++.+++.|+++.++
T Consensus 341 ~~~~~~l~~~gi~v~~-~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 341 TNMADHLLQEGIYVVG-FSYPVVPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp HHHHHHHHHTTEECCE-ECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEee-eCCCCCCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHHH
Confidence 3677888888864332 221 122358999996 899999999999999988765
No 57
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.75 E-value=2.9e-17 Score=181.35 Aligned_cols=320 Identities=12% Similarity=0.019 Sum_probs=193.9
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCCCC----eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGD----GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS 324 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~~~----g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S 324 (629)
|..++....+|..+++++++++|.+... ..+++ |+.+|+.++.+.. .|...|++...+|.+
T Consensus 82 y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~s-Gs~an~~~~~all--------------~pGD~Vl~~~~~~~~ 146 (483)
T 1rv3_A 82 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS-GSPANFAVYTALV--------------EPHGRIMGLDLPDGG 146 (483)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHT--------------CTTCEEEEECGGGTC
T ss_pred cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECC-cHHHHHHHHHHhc--------------CCCCEEEEecCccCc
Confidence 3445677889999999999999998532 44454 4577766554431 245567777777766
Q ss_pred HHH--------HHHHcCCCCCCEEEEe--cC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHH
Q psy1785 325 IKK--------LAAFEGLGSDNVYLIK--TD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADI 393 (629)
Q Consensus 325 i~k--------aa~~lGlg~~~v~~V~--~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i 393 (629)
... .+...|. .++.|+ ++ +++.+|+++|++++.+. .|.+|++ ..++.. .+.|+++|+++
T Consensus 147 ~~~~~~~~~~~~v~~~G~---~~~~v~~~~~~~~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~dl~~i~~i 216 (483)
T 1rv3_A 147 HLTHGFMTDKKKISATSI---FFESMAYKVNPDTGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLDYGRLRKI 216 (483)
T ss_dssp CGGGCCBCSSCBCSHHHH---HSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCCHHHHHHH
T ss_pred CcchhhhhcccCcccccc---eEEEEECccccCCCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCCHHHHHHH
Confidence 542 1223332 244454 46 57899999999999742 3556666 444444 88999999999
Q ss_pred HHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhh--cCCCC
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECH--SASAS 469 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~--~~~~~ 469 (629)
|+++|+++++ ++..+..... ... ..+.. +|+++.++||++.+|.+ |+++++++. ..... .....
T Consensus 217 a~~~g~~livD~ah~~g~~~~~--------~~~-~p~~~-~div~~s~~K~l~Gprg-G~i~~~~~~-~~~~~~~g~~~~ 284 (483)
T 1rv3_A 217 ADENGAYLMADMAHISGLVVAG--------VVP-SPFEH-CHVVTTTTHKTLRGCRA-GMIFYRRGV-RSVDPKTGKEIL 284 (483)
T ss_dssp HHHTTCEEEEECTTTHHHHHHT--------SSC-CGGGT-CSEEEEESSGGGCCCSC-EEEEEECSB-CC-------CCB
T ss_pred HHHcCCEEEEEccchhcccccC--------CCC-CCCCC-CcEEEecCcccCCCCCc-eEEEEcchh-hhhccccCcchh
Confidence 9999999999 5553332211 000 01234 99999999999999988 999998752 10000 00000
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNI 548 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v 548 (629)
|-.. .. .+..... ..+++-.. ....+..+++.....+++++.++..++++++.+.|++. |++++.+......+
T Consensus 285 y~~~-~~-~~~~~~~---~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 358 (483)
T 1rv3_A 285 YNLE-SL-INSAVFP---GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLI 358 (483)
T ss_dssp CCHH-HH-HHHHHTT---TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred hHHH-HH-hhhhcCC---cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceE
Confidence 0000 00 0000000 11233222 33455667777667789999999999999999999998 99987621111223
Q ss_pred EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee-ecC---CccceEEEeecCCCCC----HHHHHHHHH
Q psy1785 549 SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ-PIH---ALPNFFRLVLQNSALD----HSDMDYFID 620 (629)
Q Consensus 549 ~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~-~~~---~~~~~lR~~~~n~~~t----~edid~l~~ 620 (629)
.+.+.+.+.. ..++.+.|.+.|....... +.. -...++|+++. ..+| ++||+++++
T Consensus 359 ~v~~~~~g~~---------------~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~-~~~t~g~~~edi~~~~~ 422 (483)
T 1rv3_A 359 LVDLRSKGTD---------------GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTP-ALTSRGLLEKDFQKVAH 422 (483)
T ss_dssp EEEGGGGTCC---------------HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECH-HHHHTTCCHHHHHHHHH
T ss_pred EEeccCCCCC---------------HHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecC-CcccCCCCHHHHHHHHH
Confidence 3333222111 0245566777785432110 111 01358999996 4455 999999999
Q ss_pred HHHHHhh
Q psy1785 621 EIERLGH 627 (629)
Q Consensus 621 ~i~~l~~ 627 (629)
.|+++.+
T Consensus 423 ~l~~~l~ 429 (483)
T 1rv3_A 423 FIHRGIE 429 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 58
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.74 E-value=2.4e-17 Score=174.78 Aligned_cols=300 Identities=11% Similarity=0.073 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ .++++++||+++..++.+.+. .|...|+++..+|.++..++...|+ ++
T Consensus 41 ~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~-------------~~gd~v~~~~~~~~~~~~~~~~~g~---~~ 102 (374)
T 3uwc_A 41 EKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI-------------GAGDEVITCANTFIASVGAIVQAGA---TP 102 (374)
T ss_dssp HHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEECCCccHHHHHHHHHcCC---EE
Confidence 44556688888876 789999999998777665421 2445678888999999999999999 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.++.++++.+|+++|++++.+ .+.+|+ .++.+|.+.|+++|.++|+++|+++++ +++.+.....
T Consensus 103 ~~~~~~~~~~~d~~~l~~~~~~------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~---- 169 (374)
T 3uwc_A 103 VLVDSENGYVIDPEKIEAAITD------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRIND---- 169 (374)
T ss_dssp EEECBCTTSSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT----
T ss_pred EEEecCCCCCcCHHHHHHhCCC------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCC----
Confidence 9999998899999999988754 233444 567899999999999999999999999 5654333211
Q ss_pred cccccccccccCCcceEEEeCCC--CCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc
Q psy1785 418 SVFLTRRNYVIEVVADSVTWNPH--KLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP 495 (629)
Q Consensus 418 ~~~l~~~~~~i~~gaDsv~~~~H--K~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~ 495 (629)
+.. -.. +|.+++++| |+++.+...|+++++++.+............ . ..+... ..+...
T Consensus 170 ------~~~-~~~-~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~----~~~~~~ 230 (374)
T 3uwc_A 170 ------KFV-GSW-GQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGL-I------NRDVCV----EYGINC 230 (374)
T ss_dssp ------EET-TSS-SSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTE-E------ETTEES----SCCCBC
T ss_pred ------eec-ccc-ccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCc-c------ccCccc----cccccC
Confidence 111 122 799999977 9998744477777776544333211110000 0 000000 111122
Q ss_pred chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCC-cEEEccCCCceE---EEEEeeCCCCCCCCchhhHHHHHh
Q psy1785 496 DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG-FKLVLDEPECTN---ISFWYIPPSLRGKEDQADFNELLH 571 (629)
Q Consensus 496 ~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g-~~l~~~~p~~~~---v~F~~~p~~~~~~~~~~~~~~~l~ 571 (629)
....+..++.....++++++.++..++++++.+.|+++++ +++.. .+.... +.|......
T Consensus 231 ~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------- 294 (374)
T 3uwc_A 231 RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPV-RREGVYHVFHIYVLRVKY--------------- 294 (374)
T ss_dssp BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCC-CCTTEECCCSSEEEEETT---------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecc-CCCCCceeeEEEEEEcCC---------------
Confidence 2223333333444578889999999999999999999987 87653 232111 223221110
Q ss_pred hHHHHHHHHHHhcCcEEEeee--ecC-------------Cc-------cceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 572 KVAPKIKERMMKSGSMMITYQ--PIH-------------AL-------PNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 572 ~~~~~i~~~l~~~G~~~i~~~--~~~-------------~~-------~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++|...-... +.. .. ...+|+++. +.+|++|||++++.|+++.++
T Consensus 295 --~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 295 --RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH-PYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp --HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC-TTSCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCC-CCCCHHHHHHHHHHHHHHHHh
Confidence 1356778888886422111 000 00 157999995 999999999999999987653
No 59
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.74 E-value=1.1e-16 Score=170.63 Aligned_cols=310 Identities=12% Similarity=0.098 Sum_probs=204.5
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
|...+....+++.+.+++.+.+|++ ..+.++++|+|+++..++.+... |...|++...+|.++.
T Consensus 63 y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~ 128 (388)
T 1j32_A 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE--------------PGDEVIIPAPFWVSYP 128 (388)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCChhHH
Confidence 4334456778888888898888864 36789999999999888776521 3346777888999999
Q ss_pred HHHHHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeE
Q psy1785 327 KLAAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMAD 401 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~l 401 (629)
.+++..|. +++.+|.++ ++.+|+++|+++|.+ .+.+|+.+...+.+|.+ +++++|+++|+++|+++
T Consensus 129 ~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 199 (388)
T 1j32_A 129 EMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWV 199 (388)
T ss_dssp HHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHcCC---EEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 99999998 899999875 568999999998853 35567777788889998 55999999999999999
Q ss_pred EE--ecCcccccccccccccccccccccc-CCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcC
Q psy1785 402 SV--TWNPHKLLTAPQQCSVFLTRRNYVI-EVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKF 477 (629)
Q Consensus 402 hV--A~gg~~l~~~~~~~~~~l~~~~~~i-~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~ 477 (629)
++ +++...+-..+ .. ....+.. ..+.|.++.++||+++.| +.+|+++++++ +....... ...
T Consensus 200 i~De~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~----~~~---- 265 (388)
T 1j32_A 200 LSDEIYEKILYDDAQ--HL---SIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKI----QGH---- 265 (388)
T ss_dssp EEECTTTTCBCTTCC--CC---CGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHH-HHHHHHHH----HHT----
T ss_pred EEEccchhcccCCCC--CC---CHHHccccccCCEEEEeechhccCCcccceEEEEeCHH-HHHHHHHH----Hhh----
Confidence 99 66654321110 00 0011100 024799999999999744 33888887653 33322110 000
Q ss_pred CCcccCCCCccCCCCCCcchHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCC
Q psy1785 478 YDTKYDSGDKHIQCGRKPDVLKFWFMWKAK--GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPP 555 (629)
Q Consensus 478 ~~~~~~~~~~~~~~sr~~~al~~w~~l~~~--G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~ 555 (629)
..+ + ...+..+.++..+ +.+.+++..++..++++++.+.|++.+|++++. |..+.+++...+.
T Consensus 266 -------~~~---~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~~~~~~~~~~~~ 330 (388)
T 1j32_A 266 -------STS---N---VCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK--PDGAFYMFPSIAK 330 (388)
T ss_dssp -------TTC---S---CCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC--CCBTTEECCBCGG
T ss_pred -------ccc---C---CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC--CCeeEEEEEecCC
Confidence 000 1 1223333332222 456688888899999999999999988988654 4433332211111
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMK-SGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. +. + ..++.+.|.+ .|..+........ .+++|+++. +++++|+.+++.|+++.++
T Consensus 331 -~-~~-~-----------~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~---~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 331 -T-GR-S-----------SLDFCSELLDQHQVATVPGAAFGA-DDCIRLSYA---TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -G-TC-C-----------HHHHHHHHHHHHCEECEEGGGGTC-TTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred -C-CC-C-----------HHHHHHHHHHhCCEEEeChhhhCC-CCcEEEEec---CCHHHHHHHHHHHHHHHHH
Confidence 0 00 0 1356677765 6865433222222 358999984 5899999999999887654
No 60
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.74 E-value=1.9e-16 Score=170.99 Aligned_cols=313 Identities=12% Similarity=0.090 Sum_probs=198.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..+++++||+++..++.+.+. .|...|+++..+|.++..++...|. ++
T Consensus 45 ~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 106 (418)
T 2c81_A 45 RKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI-------------GEGDEVIVPSLTWIATATAVLNVNA---LP 106 (418)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCccHhHHHHHHHcCC---EE
Confidence 55667788889986 578999999988877765421 1344678888999999999999998 99
Q ss_pred EEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.+++++ ++.+|+++|+++|.+ .+.+|+. ++.+|.+.|+++|.++|+++|+++++ +++.......
T Consensus 107 ~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~--- 174 (418)
T 2c81_A 107 VFVDVEADTYCIDPQLIKSAITD------KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNN--- 174 (418)
T ss_dssp EEECBCTTTCSBCHHHHGGGCCT------TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT---
T ss_pred EEEecCCCCCCcCHHHHHHhhCC------CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCC---
Confidence 9999986 789999999988853 2444544 34689999999999999999999999 5655432211
Q ss_pred cccccccccc-ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcC-CCcccCCCC-----ccC
Q psy1785 417 CSVFLTRRNY-VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF-YDTKYDSGD-----KHI 489 (629)
Q Consensus 417 ~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~-~~~~~~~~~-----~~~ 489 (629)
+.+ .+.. ++++++++||+++.+ .+|+++.+++.+........ .+....... ......+.+ ..+
T Consensus 175 -------~~~~~~~~-~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
T 2c81_A 175 -------QRAGTIGD-IGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLR-ADSRVYCDDSSELMHGDMQLVKKGDIQ 244 (418)
T ss_dssp -------EETTSSSS-EEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHH-BTTEEECSCGGGCCTTCBSEEECCSSC
T ss_pred -------Eecccccc-eEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHH-HhCccccccccccccchhhcccccccc
Confidence 011 1223 788888889999873 56666665544433221100 000000000 000000000 001
Q ss_pred CCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCc------eEEEEEeeCCCCCCCCch
Q psy1785 490 QCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC------TNISFWYIPPSLRGKEDQ 563 (629)
Q Consensus 490 ~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~------~~v~F~~~p~~~~~~~~~ 563 (629)
....+...+..+..+. ..+++++..++..++++++.+.|+++|++++.. ++.. .++++++......+..
T Consensus 245 g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (418)
T 2c81_A 245 GSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMK-RPPQVSRQTYYGYVFRFDPVKFGGLN-- 319 (418)
T ss_dssp CCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECC-CCTTEEECCCSEEEEEECGGGTTTCC--
T ss_pred CcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCC-CCCCCcccccEEEEEEEccccccccC--
Confidence 1222233444333332 245678888999999999999999999999874 3332 2455665320000110
Q ss_pred hhHHHHHhhHHHHHHHHHHhc-CcE---EEee-eecC---------------------------Cc-------cceEEEe
Q psy1785 564 ADFNELLHKVAPKIKERMMKS-GSM---MITY-QPIH---------------------------AL-------PNFFRLV 604 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~~-G~~---~i~~-~~~~---------------------------~~-------~~~lR~~ 604 (629)
..++.+.|.++ |.. .-.+ .+.. .. ...||++
T Consensus 320 ----------~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 389 (418)
T 2c81_A 320 ----------ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIH 389 (418)
T ss_dssp ----------HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEE
T ss_pred ----------HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEec
Confidence 13567777777 864 3221 1110 11 1489999
Q ss_pred ecCCCC-CHHHHHHHHHHHHHHhhc
Q psy1785 605 LQNSAL-DHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 605 ~~n~~~-t~edid~l~~~i~~l~~~ 628 (629)
+. +.+ |++|||++++.|+++.++
T Consensus 390 ~~-~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 390 HA-ILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp GG-GGGSCHHHHHHHHHHHHHHHHT
T ss_pred CC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 95 999 999999999999988654
No 61
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.74 E-value=2.1e-17 Score=180.63 Aligned_cols=284 Identities=12% Similarity=0.028 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
...++.+++++ +|.+ ...++++|+|++|..++.+... |...|+++..+|.|+..++...|.
T Consensus 58 ~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~--------------~gd~Vlv~~~~h~s~~~~~~~~G~--- 118 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQ--------------KKGDILMARNVHKSVLHALDISQQ--- 118 (446)
T ss_dssp HHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTT--------------SSSCEEECTTCCHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEecCccHHHHHHHHHcCC---
Confidence 34677888999 9887 4678899999999888776521 344678899999999999999998
Q ss_pred CEEEEec--CCC----CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccc
Q psy1785 338 NVYLIKT--DAR----GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHK 409 (629)
Q Consensus 338 ~v~~V~~--d~~----g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~ 409 (629)
+++.++. +++ +.+|+++| +.. .+.+|+.+. +|.+|.+.|+++|+++|+++|+|+++ ||+++.
T Consensus 119 ~~~~v~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~ 188 (446)
T 2x3l_A 119 EGHFIETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHF 188 (446)
T ss_dssp CEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred eEEEEeCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhh
Confidence 8999998 665 67888877 211 345677777 66799999999999999999999999 888743
Q ss_pred cccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhh-hhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 410 LLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLT-ECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 410 l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~-~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
.+... .. . ....|+|+++.++||++++|.++|+++++++. +. ..+... ...
T Consensus 189 ~f~~~-~~----~----~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~-i~~~~~~~~-~~~----------------- 240 (446)
T 2x3l_A 189 GLQGF-PD----S----TLNYQADYVVQSFHKTLPALTMGSVLYIHKNA-PYRENIIEY-LSY----------------- 240 (446)
T ss_dssp TSTTS-CC----C----GGGGTCSEEEECHHHHSSSCTTCEEEEEETTC-TTHHHHHHH-HHH-----------------
T ss_pred ccCCC-CC----C----hHHcCCCEEEECCccccccccccEEEEEcCCc-CCHHHHHHH-HHH-----------------
Confidence 23220 00 0 12335899999999999999999999998752 21 111000 000
Q ss_pred CCC-CCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhH
Q psy1785 489 IQC-GRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADF 566 (629)
Q Consensus 489 ~~~-sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~ 566 (629)
.+. +... ....+..+++.+...|.+++.++..+++++++++ +++++. ......+.|.+. +..
T Consensus 241 ~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~-~~~~~~l~i~~~--~~~-------- 304 (446)
T 2x3l_A 241 FQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQ-VDDPLKLLIKYE--GFT-------- 304 (446)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEE-CSSTTEEEEECT--TSC--------
T ss_pred HcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECc-CCCCeEEEEEeC--CcC--------
Confidence 011 1111 2234445555555556666788888888888877 788875 222223555542 111
Q ss_pred HHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 567 NELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 567 ~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++|.. +.. .+. +++|++++ ..+|++|+ +++++|+++.+.
T Consensus 305 -------~~~l~~~L~~~GI~-v~~---~g~-~~iRi~~~-~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 305 -------GHDIQNWFMNAHIY-LEL---ADD-YQALAILP-LWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp -------HHHHHHHHHHTTEE-ESE---ECS-SCEEEECC-CCCTTCCC-CHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHCCCE-EEe---cCC-CEEEEEee-cCCCHHHH-HHHHHHHHHHHh
Confidence 12567788888854 321 122 47999996 88899999 999999987653
No 62
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.73 E-value=7.6e-17 Score=185.23 Aligned_cols=321 Identities=11% Similarity=0.063 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH-HHHcCCCCC
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL-AAFEGLGSD 337 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka-a~~lGlg~~ 337 (629)
-.++.+.+++++|.+. ..++++|+|++|..++.+.. .|...|+++...|.|+..+ +...|.
T Consensus 175 i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~--------------~pGD~VLv~~~~H~S~~~~~~~l~Ga--- 236 (730)
T 1c4k_A 175 AVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV--------------SNGDLVLFDRNNHKSVYNSALAMAGG--- 236 (730)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC--------------CTTCEEEEETTCCHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc--------------CCCCEEEEcCCchHHHHHHHHHHCCC---
Confidence 3567778999999874 35566666688877766542 1445788899999999998 777787
Q ss_pred CEEEEecCCC-----CCCCHHHH-----HHHHHHH-Hh--CCCCc-EEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE
Q psy1785 338 NVYLIKTDAR-----GRMLPESL-----RGEIQRT-LA--EGAVP-FMVSATSGTTVLGAFDPIPAIADICAEYDMADSV 403 (629)
Q Consensus 338 ~v~~V~~d~~-----g~~d~~~L-----e~~i~~~-~~--~g~~~-~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV 403 (629)
.++.++.+.+ |.+|+++| +++|.+. .+ ....+ .+|+++.+ |.+|.+.|+++|+++|+++++++||
T Consensus 237 ~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~liv 315 (730)
T 1c4k_A 237 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEF 315 (730)
T ss_dssp EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEE
T ss_pred EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEE
Confidence 8888876432 45899998 6665431 00 01122 45666665 5799999999999999999999999
Q ss_pred --ecCcccccccccccccccccccccc-CCcce----EEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCc
Q psy1785 404 --TWNPHKLLTAPQQCSVFLTRRNYVI-EVVAD----SVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDK 476 (629)
Q Consensus 404 --A~gg~~l~~~~~~~~~~l~~~~~~i-~~gaD----sv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~ 476 (629)
||+.+..+.+.+. ....+.. +.|+| +++.++||++++|.++|+++++++.+ .. ...++....
T Consensus 316 DeAh~~~~~f~~~~~-----g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l-~g----~~~~i~~~~- 384 (730)
T 1c4k_A 316 DSAWVGYEQFIPMMR-----NSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI-KG----QLRYCDHKH- 384 (730)
T ss_dssp ECTTCCGGGSSGGGG-----GGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG-TT----STTCCCHHH-
T ss_pred EcccccccccCcccC-----CcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh-cC----cccccCHHH-
Confidence 8887654433000 0001111 22577 99999999999999999999988642 10 111221000
Q ss_pred CCCcccCCCCccCCCCCCc--chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCC---------
Q psy1785 477 FYDTKYDSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPE--------- 544 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~sr~~--~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~--------- 544 (629)
....+ ..++.+... ....+-.+++.+..++..+++++..++++++++.|++ ++|++++. +..
T Consensus 385 -~~~~~----~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~-p~~~~~~~~~~~ 458 (730)
T 1c4k_A 385 -FNNSF----NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFV-PPVVNGKKWEDG 458 (730)
T ss_dssp -HHHHH----HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESS-CSEETTEEGGGS
T ss_pred -HHHHH----HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcc-cccccccccccc
Confidence 00000 011222222 2233334555555544577889999999999999998 78999865 211
Q ss_pred ---------------------------c-------eEEEEEeeCCC-CCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEE
Q psy1785 545 ---------------------------C-------TNISFWYIPPS-LRGKEDQADFNELLHKVAPKIKERMMKSGSMMI 589 (629)
Q Consensus 545 ---------------------------~-------~~v~F~~~p~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i 589 (629)
. ..++|...+-. ..|.-.. ...-...+.+.|.++|.. +
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~------~g~~~~~l~~~L~e~GI~-v 531 (730)
T 1c4k_A 459 DTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED------FGVPATIVANYLRDHGII-P 531 (730)
T ss_dssp CHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS------SCCCHHHHHHHHHHTTCC-C
T ss_pred ccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccc------cCCCHHHHHHHHHHCCcE-E
Confidence 0 01344331000 0000000 000123567788888853 2
Q ss_pred eeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 590 TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 590 ~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.. . + .+.+|++++ ..+|++|+++|+++|+++.+
T Consensus 532 ~~--~-~-~~~ir~~~s-~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 532 EK--S-D-LNSILFLMT-PAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp SE--E-C-SSEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred EE--C-C-CCeEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 22 1 2 247999995 99999999999999988764
No 63
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.73 E-value=1.9e-17 Score=175.84 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ .+++++|||+++..++.+... .|...|+++..+|.++..++...|. ++
T Consensus 39 ~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~-------------~~gd~Vi~~~~~~~~~~~~~~~~g~---~~ 100 (373)
T 3frk_A 39 KKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI-------------GFGDEVIVPSNTFIATALAVSYTGA---KP 100 (373)
T ss_dssp HHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEETTSCTHHHHHHHHHSC---EE
T ss_pred HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCCcHHHHHHHHHcCC---EE
Confidence 44455678888875 789999999998887765411 2445688899999999999999999 99
Q ss_pred EEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++ +++.+|+++|+++|.+ .+.+|+ .++.+|.+.|+++|.++|+++|+++++ +++.+.....
T Consensus 101 ~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~--- 168 (373)
T 3frk_A 101 IFVEPDIRTYNIDPSLIESAITE------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKG--- 168 (373)
T ss_dssp EEECEETTTTEECGGGTGGGCCT------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETT---
T ss_pred EEEeccccccCcCHHHHHHhcCC------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECC---
Confidence 999998 5689999999988854 244454 456889999999999999999999999 5554333211
Q ss_pred ccccccccccccCCcceEEEeC--CCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWN--PHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~--~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
+..+ .. +|.++++ +||+++.+...|+++.+++.+...... +...... ..+.. ...+..
T Consensus 169 -------~~~~-~~-~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~-----~~~~g~~--~~~~~----~~~g~~ 228 (373)
T 3frk_A 169 -------MKVG-SL-GDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKA-----LSNYGSE--KKYHH----IYKGFN 228 (373)
T ss_dssp -------EETT-SS-SSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHH-----HHBTTCS--BTTBC----CSCCCB
T ss_pred -------Eecc-cc-ccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHH-----HHhcCcc--cCCcc----cccccc
Confidence 1111 12 5666666 779998644466776666544332211 0000000 00000 011222
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCc---eEEEEEeeCCCCCCCCchhhHHHHHh
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC---TNISFWYIPPSLRGKEDQADFNELLH 571 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~---~~v~F~~~p~~~~~~~~~~~~~~~l~ 571 (629)
+....+..++.....++++++.++..++++++.+.|++++ +++.. .+.. +.+.|.+....
T Consensus 229 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~--------------- 291 (373)
T 3frk_A 229 SRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPV-EADYAKHVWYTFVIRSEK--------------- 291 (373)
T ss_dssp CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCC-CCTTEECCCSSEEEEESS---------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEecc-CCCCCceeeEEEEEEeCC---------------
Confidence 2222233333333456788899999999999999999886 66543 2221 11223222110
Q ss_pred hHHHHHHHHHHhcCcEEEeee--ecC-------------Ccc-------ceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 572 KVAPKIKERMMKSGSMMITYQ--PIH-------------ALP-------NFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 572 ~~~~~i~~~l~~~G~~~i~~~--~~~-------------~~~-------~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.++|...-... +.. ..+ ..+|+++. +.+|++|||++++.|++...
T Consensus 292 --~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 292 --RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIW-YGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp --HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCC-TTCCHHHHHHHHHHHHTCC-
T ss_pred --HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCC-CCCCHHHHHHHHHHHHHHhh
Confidence 1356778888885421111 110 001 47999995 99999999999999987643
No 64
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.73 E-value=2.6e-16 Score=168.69 Aligned_cols=310 Identities=12% Similarity=0.059 Sum_probs=205.1
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCC---CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQG---GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~---~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+.+++.+++++.+|.+. ...++++|||+++..++.+.. .|...|++...+|.++
T Consensus 74 y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~--------------~~gd~vl~~~~~~~~~ 139 (407)
T 3nra_A 74 YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV--------------ARGDKVAIVQPDYFAN 139 (407)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC--------------CTTCEEEEEESCCTHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC--------------CCCCEEEEcCCcccch
Confidence 33344556777888899999999852 589999999999887765431 1344677888899999
Q ss_pred HHHHHHcCCCCCCEEEEec------CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH
Q psy1785 326 KKLAAFEGLGSDNVYLIKT------DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAE 396 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~------d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~ 396 (629)
..+++..|. +++.+|. ++++.+|+++|+++|.+ .+..|+.+...+.+|.+-| +++|+++|++
T Consensus 140 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~ 210 (407)
T 3nra_A 140 RKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAAR 210 (407)
T ss_dssp HHHHHHTTC---EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---EEEEeecccccccCcCCCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHH
Confidence 999999998 9999998 46788999999999875 2445667778899999988 9999999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccc-cCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccc
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYV-IEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLF 472 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~-i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~ 472 (629)
||+++++ +++.+.+-..+. . ....++ ...+.+.++.+++|+++.| ..+|+++.++ .+..........+.
T Consensus 211 ~~~~li~Dea~~~~~~~g~~~--~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~~~- 283 (407)
T 3nra_A 211 YGATVIADQLYSRLRYAGASY--T---HLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR-AIIARMEKLQAIVS- 283 (407)
T ss_dssp HTCEEEEECTTTTSBCTTCCC--C---CGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECH-HHHHHHHHHHHHHT-
T ss_pred cCCEEEEEccccccccCCCCC--C---ChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCH-HHHHHHHHHHhhhc-
Confidence 9999999 776544321100 0 011111 1123679999999999844 5578777643 33332211000000
Q ss_pred cCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EE
Q psy1785 473 QKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK--GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-IS 549 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~--G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~ 549 (629)
. ....+..+.+...+ +.+.++++.++..++++++.+.|+++++++++. |..+. +.
T Consensus 284 ------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~ 341 (407)
T 3nra_A 284 ------------------L--RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART--PQAGSYLF 341 (407)
T ss_dssp ------------------S--SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC--CSBSSEEC
T ss_pred ------------------c--CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceecc--CCeeEEEE
Confidence 0 01122233333333 335678888899999999999999998988754 44322 22
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMK-SGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+.+...... ..++.++|.+ .|..+....... ...+++|++++ . ++++|+.+++.|+++.+
T Consensus 342 ~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~--~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 342 PRLPKLAVA---------------PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-Q--DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp CBCCCBSSC---------------HHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC-S--CHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCC---------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC-C--CHHHHHHHHHHHHHHHH
Confidence 232211110 1245667765 586543322221 12368999996 2 89999999999988765
Q ss_pred c
Q psy1785 628 D 628 (629)
Q Consensus 628 ~ 628 (629)
+
T Consensus 404 ~ 404 (407)
T 3nra_A 404 R 404 (407)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.73 E-value=1.3e-15 Score=162.41 Aligned_cols=308 Identities=11% Similarity=0.059 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..+++.+||+++..++.+.+. .|...|+++..+|.++..++...|. ++
T Consensus 41 ~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~~-------------~~gd~Vi~~~~~~~~~~~~~~~~g~---~~ 102 (388)
T 1b9h_A 41 NSFEREFAAHHGAA--HALAVTNGTHALELALQVMGV-------------GPGTEVIVPAFTFISSSQAAQRLGA---VT 102 (388)
T ss_dssp HHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCccHHHHHHHHHcCC---EE
Confidence 34455678888876 456666679988877765411 1344678889999999999999998 99
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++++ +.+|+++|+++|.+ .+.+|+ ..+.+|.+.|+++|.++|+++|+++++ +++.+..... .
T Consensus 103 ~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~-~- 171 (388)
T 1b9h_A 103 VPVDVDAATYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQG-K- 171 (388)
T ss_dssp EEECBCTTTCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT-E-
T ss_pred EEEecCCCcCCCCHHHHHHhcCc------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCC-e-
Confidence 99999874 89999999998853 234444 677889999999999999999999999 5553332211 0
Q ss_pred ccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccch--hhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSV--LTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~--l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
.... +.. ++..+++.||+++++ ..|+++++++.+ +....... .+ .... ....+.......+.+
T Consensus 172 -----~~~~--~~~-i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~~g~~~~ 236 (388)
T 1b9h_A 172 -----RVGE--LDS-IATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRH-SC-GRPR----DDRRYFHKIAGSNMR 236 (388)
T ss_dssp -----EGGG--SSS-CEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHT-BT-TCCT----TCSSCCCCSCCCBCB
T ss_pred -----eccc--ccc-eEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHH-hC-CCCc----cCccceeecccccCC
Confidence 1111 223 889999999999765 467777776544 33321111 00 0000 000000000111112
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC----CC-ceEEEEEeeCCCCCCCCchhhHHHH
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE----PE-CTNISFWYIPPSLRGKEDQADFNEL 569 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~----p~-~~~v~F~~~p~~~~~~~~~~~~~~~ 569 (629)
...+.++..+.. .+.+++.+++..++++++.+.|+++|++++..+. +. .+.++|++.+.. ..
T Consensus 237 ~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--- 303 (388)
T 1b9h_A 237 LNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT--------EE--- 303 (388)
T ss_dssp CBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC--------HH---
T ss_pred cCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC--------cc---
Confidence 344455544433 3557778888888999999999999899876411 22 345666653110 00
Q ss_pred HhhHHHHHHHHHHhcCcEEEe-eeecCC--------------------c-------cceEEEeecCCCC-CHHHHHHHHH
Q psy1785 570 LHKVAPKIKERMMKSGSMMIT-YQPIHA--------------------L-------PNFFRLVLQNSAL-DHSDMDYFID 620 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~-~~~~~~--------------------~-------~~~lR~~~~n~~~-t~edid~l~~ 620 (629)
-..++.+.|.++|...-. +.+... . ...||+++. +.+ |++|||++++
T Consensus 304 ---~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~~t~edi~~~~~ 379 (388)
T 1b9h_A 304 ---RRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHR-VLLAGEPELHATAE 379 (388)
T ss_dssp ---HHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGG-GGGSCHHHHHHHHH
T ss_pred ---cHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCC-CCCCCHHHHHHHHH
Confidence 013567788888865422 212110 0 136999995 888 9999999999
Q ss_pred HHHHHhhc
Q psy1785 621 EIERLGHD 628 (629)
Q Consensus 621 ~i~~l~~~ 628 (629)
.|+++.++
T Consensus 380 ~l~~~~~~ 387 (388)
T 1b9h_A 380 IIADAVAR 387 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987654
No 66
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.72 E-value=2e-16 Score=169.06 Aligned_cols=303 Identities=10% Similarity=0.085 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ .++++++||+++..++.+.+. .|...|+++..+|.+...++...|. ++
T Consensus 59 ~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~g~---~~ 120 (391)
T 3dr4_A 59 VEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGI-------------GPGDEVIVPSLTYIASANSVTYCGA---TP 120 (391)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCchHHHHHHHHHCCC---EE
Confidence 45556678888876 789999999998888776521 1445688889999999999999998 99
Q ss_pred EEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++ +++.+|+++|++++.+ .+.+|+ .++.+|.+.|+++|+++|+++|+++++ +++.+.....
T Consensus 121 ~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--- 188 (391)
T 3dr4_A 121 VLVDNDPRTFNLDAAKLEALITP------RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRG--- 188 (391)
T ss_dssp EEECBCTTTCSBCGGGSGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT---
T ss_pred EEEecCccccCcCHHHHHHhcCC------CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECC---
Confidence 999998 5689999999988753 233444 356889999999999999999999999 5654333221
Q ss_pred ccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcc
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 496 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~ 496 (629)
.... .+.. +++++++.||+++++ ..|+++++++.+........ .+-... +..+ +....+....
T Consensus 189 -----~~~~-~~~d-i~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~-~~g~~~----~~~~----~~~~~g~~~~ 251 (391)
T 3dr4_A 189 -----KKSG-SLGD-CATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLR-GQGMDP----NRRY----WFPIVGFNYR 251 (391)
T ss_dssp -----EETT-SSSS-EEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHH-BTTCCT----TSTT----CCSSCCCBCB
T ss_pred -----eeec-ccCC-EEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHH-hcCCCC----CCcc----cccccccccC
Confidence 1000 1222 777788899999763 45666666654433221100 000000 0000 0111222333
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC--C-----CceEEEEEeeCCCCCCCCchhhHHHH
Q psy1785 497 VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE--P-----ECTNISFWYIPPSLRGKEDQADFNEL 569 (629)
Q Consensus 497 al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~--p-----~~~~v~F~~~p~~~~~~~~~~~~~~~ 569 (629)
...+..++.....++++++.++..++++++.+.|++. ++++.. . + ....+.+++... .+..
T Consensus 252 ~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~-------- 319 (391)
T 3dr4_A 252 MTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTK-PHVALTGRHVFWMYTVRLGEG--LSTT-------- 319 (391)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEEC-CCCCTTSCCCCSSEEEEECSS--CSSC--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-cCCCCCCcceeEEEEEEECCc--cchh--------
Confidence 3333444444445788899999999999999999998 888765 3 1 122344544321 0110
Q ss_pred HhhHHHHHHHHHHhcCcEEEeee-ecC------C------------ccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 570 LHKVAPKIKERMMKSGSMMITYQ-PIH------A------------LPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~~~-~~~------~------------~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.+.|.++|...-.+. ++. . ....+|+++. +.+|++|||++++.|+++.
T Consensus 320 ----~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 320 ----RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTH-AGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ----HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCC-TTCCHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 1357788888886432221 100 0 1247999985 9999999999999998763
No 67
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.72 E-value=1.1e-15 Score=165.21 Aligned_cols=295 Identities=13% Similarity=0.146 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH----HcCC
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA----FEGL 334 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~----~lGl 334 (629)
..++.+++++++|.+ ..++++|||+++..++.+.. .|...|+++...|.+...... ..|+
T Consensus 58 ~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~--------------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~ 121 (412)
T 2cb1_A 58 AKALEERLKALEGAL--EAVVLASGQAATFAALLALL--------------RPGDEVVAAKGLFGQTIGLFGQVLSLMGV 121 (412)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC--------------CTTCEEEEETTCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--------------CCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 355667788999875 68999999999988876541 134457778889988776543 3566
Q ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccc
Q psy1785 335 GSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLT 412 (629)
Q Consensus 335 g~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~ 412 (629)
+++.++.| +++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ +++......
T Consensus 122 ---~~~~~~~~------~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~ 186 (412)
T 2cb1_A 122 ---TVRYVDPE------PEAVREALSA------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALC 186 (412)
T ss_dssp ---EEEEECSS------HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSC
T ss_pred ---EEEEECCC------HHHHHHHhcc------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccC
Confidence 78888764 7888887753 366788888999999999999999999999999999 665542211
Q ss_pred ccccccccccccccccCCcceEEEeCCCCCCCCCCc-cEEEEEeccchh-hhhhcCCCCccccCC--------cCCCccc
Q psy1785 413 APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ-CSVFLTRHQSVL-TECHSASASYLFQKD--------KFYDTKY 482 (629)
Q Consensus 413 ~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~-~g~ll~r~~~~l-~~~~~~~~~yl~~~~--------~~~~~~~ 482 (629)
.+ +..++|+++.++||++++|.+ .|.++++++... .......++...... .....
T Consensus 187 ~~-------------~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-- 251 (412)
T 2cb1_A 187 RP-------------LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPER-- 251 (412)
T ss_dssp CG-------------GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHH--
T ss_pred Cc-------------cccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHH--
Confidence 10 122599999999999998876 777777663321 000000011100000 00000
Q ss_pred CCCCcc-CCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-----------------C
Q psy1785 483 DSGDKH-IQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-----------------E 544 (629)
Q Consensus 483 ~~~~~~-~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-----------------~ 544 (629)
....+ ...+.....+..|+.+.. .+.+.+++++..+++++|.+.|.+.++++.+. .| .
T Consensus 252 -~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~-~p~~~~~p~~~~~~~~~~~~ 327 (412)
T 2cb1_A 252 -VRTLGLSLCGMALSPFNAYLLFQG--LETVALRVARMSETARFLAERLQGHPKVKALR-YPGLPEDPAHRNARKYLASG 327 (412)
T ss_dssp -HHHHHTTTTCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEE-CTTSTTCTTHHHHHHHCSSS
T ss_pred -HHHHHHHhcCCCCChHHhHHHHcC--CchHHHHHHHHHHHHHHHHHHHHcCCCeeEEE-CCCCCCCccHHHHHHhCCCC
Confidence 00000 011223355666666653 35677888888899999999999999998663 12 3
Q ss_pred ceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee----------ec-------C-------C-ccc
Q psy1785 545 CTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ----------PI-------H-------A-LPN 599 (629)
Q Consensus 545 ~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~----------~~-------~-------~-~~~ 599 (629)
.++++|.+ . . . ..+.+.+.+.|... ... +. . | ...
T Consensus 328 ~~iv~~~~-~-~------~-----------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 328 GPILTLDL-G-D------L-----------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp CSEEEEEC-S-S------H-----------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred ceEEEEEe-C-C------H-----------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 45788886 3 1 1 13344555556543 320 10 0 1 036
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 600 FFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 600 ~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.+|++++ ..+++++|+.++++|++
T Consensus 388 ~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred eEEEEec-cCCHHHHHHHHHHHHhh
Confidence 8999996 99999999999999874
No 68
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.71 E-value=4.5e-16 Score=171.36 Aligned_cols=308 Identities=15% Similarity=0.103 Sum_probs=182.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC---CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH----
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG---DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS---- 324 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~---~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S---- 324 (629)
.+....+|..+++++++++|.+.. ..+++.+||.+|..++.+.. .|...|++....|.+
T Consensus 95 ~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--------------~pGD~Vl~~~~~h~g~l~h 160 (490)
T 2a7v_A 95 AEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------------QPHDRIMGLDLPDGGHLTH 160 (490)
T ss_dssp ---CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------------CSCEECCC-----------
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--------------CCCCEecccCccccccccc
Confidence 355568999999999999999864 23556689999988876542 244556666655533
Q ss_pred --HHH--HHHHcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCC
Q psy1785 325 --IKK--LAAFEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDM 399 (629)
Q Consensus 325 --i~k--aa~~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~ 399 (629)
+.. .+...|... .++.+++| ++|.+|+++|++++.+. .|.+|++ +.+..+.+.|+++|+++|+++|+
T Consensus 161 ~~~~~~~~i~~~g~~~-~~~~~~vd~~~~~iD~d~le~~l~~~-----~~klIi~--~~s~~~~~~dl~~i~~ia~~~g~ 232 (490)
T 2a7v_A 161 GYMSDVKRISATSIFF-ESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIA--GTSAYARLIDYARMREVCDEVKA 232 (490)
T ss_dssp ---------------------CCBCTTTCSBCHHHHHHHHHHH-----CCSEEEE--CCSSCCSCCCHHHHHHHHHHTTC
T ss_pred hhhhcchhHHHcCCeE-EEEecccccccCCcCHHHHHHHHhhc-----CCcEEEE--cCCCCCCcccHHHHHHHHHHcCC
Confidence 221 233445411 23344555 56899999999998753 2334443 45566778899999999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccch-------------hhhhh
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSV-------------LTECH 464 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~-------------l~~~~ 464 (629)
++|+ |+..+..... . ... .++. +|+++.++||+|++|.+ |++++++.-. +...+
T Consensus 233 ~livD~Ah~~glv~~g-~------~~~--~~~~-aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i 301 (490)
T 2a7v_A 233 HLLADMAHISGLVAAK-V------IPS--PFKH-ADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRI 301 (490)
T ss_dssp EEEEECGGGHHHHHTT-S------SCC--GGGT-CSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHH
T ss_pred EEEEccccccccccCC-c------CCC--CCCC-CCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHH
Confidence 9999 5543332211 0 001 1344 99999999999988976 8888876310 10000
Q ss_pred cCCCCccccCCcCCCcccCCCCccCCCCCCcc-hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC
Q psy1785 465 SASASYLFQKDKFYDTKYDSGDKHIQCGRKPD-VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP 543 (629)
Q Consensus 465 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~-al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p 543 (629)
. ..++ ...+++.... ..++..+++..-.++++++.++..+++++|++.|++. |++++....
T Consensus 302 ~---~~~~--------------~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t 363 (490)
T 2a7v_A 302 N---FAVF--------------PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGT 363 (490)
T ss_dssp H---HHHT--------------TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred H---HHhc--------------ccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCC
Confidence 0 0011 0123333322 2333344544434567888999999999999999997 999875223
Q ss_pred CceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCC-----ccceEEEee---cCCCCCHHHH
Q psy1785 544 ECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHA-----LPNFFRLVL---QNSALDHSDM 615 (629)
Q Consensus 544 ~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~-----~~~~lR~~~---~n~~~t~edi 615 (629)
....+.+.+.+.+.++ .++.+.|.+.|..+ ....+.+ .+.-||+++ ++...+++|+
T Consensus 364 ~t~lv~vdl~~~g~~~---------------~~~~~~L~~~GI~v-~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~ 427 (490)
T 2a7v_A 364 DNHLVLVDLRPKGLDG---------------ARAERVLELVSITA-NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp SSSEEEEECTTTTCCH---------------HHHHHHHHHTTEEC-EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred CCeEEEEEeCCCCCCH---------------HHHHHHHHhCCeEE-ecCccCCCCCCCCCCceEecccccccCCCCHHHH
Confidence 4455555554433221 24566777788643 3211111 124699955 3467899999
Q ss_pred HHHHHHHHHHh
Q psy1785 616 DYFIDEIERLG 626 (629)
Q Consensus 616 d~l~~~i~~l~ 626 (629)
+++++.|.++.
T Consensus 428 ~~~~~~i~~~l 438 (490)
T 2a7v_A 428 RRVVDFIDEGV 438 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 69
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.71 E-value=9.2e-16 Score=164.29 Aligned_cols=300 Identities=15% Similarity=0.141 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
...++.+.+++++|.+ ..+++.+||+++..++.+.. .|...|+++..+|.++..+++..|.
T Consensus 91 ~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~--------------~~gd~v~~~~~~~~~~~~~~~~~g~--- 151 (401)
T 1fc4_A 91 SHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL--------------GAEDAIISDALNHASIIDGVRLCKA--- 151 (401)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC--------------CTTCEEEEETTCCHHHHHHHHTSCS---
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHc--------------CCCCEEEEcchhHHHHHHHHHHcCC---
Confidence 3466677888889987 56778888998877665432 1344677888899999999888888
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC-ccccc-cc
Q psy1785 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN-PHKLL-TA 413 (629)
Q Consensus 338 ~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g-g~~l~-~~ 413 (629)
+++.++ .+|+++|++.|.+..+++..+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++ +.... ..
T Consensus 152 ~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~ 226 (401)
T 1fc4_A 152 KRYRYA-----NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGR 226 (401)
T ss_dssp EEEEEC-----TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSC
T ss_pred ceEEEC-----CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCC
Confidence 888877 3589999999987554433466788888889999999999999999999999999 775 43211 11
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
+ .. .. .++..++|+++.++||+++++.+ |++++++ ++..........|... .+..
T Consensus 227 ~--~~---~~--~~~~~~~di~~~s~sK~~~~~~g-G~~~~~~-~~~~~l~~~~~~~~~~----------------~~~~ 281 (401)
T 1fc4_A 227 G--SH---EY--CDVMGRVDIITGTLGKALGGASG-GYTAARK-EVVEWLRQRSRPYLFS----------------NSLA 281 (401)
T ss_dssp C--HH---HH--TTCTTCCSEEEEESSSTTCSSSC-EEEEECH-HHHHHHHHHCHHHHHS----------------CCCC
T ss_pred c--cH---HH--cCCCcCCcEEEecchhhccCCCC-EEEEcCH-HHHHHHHHhCcCceeC----------------CCCC
Confidence 0 00 00 12332489999999999966665 8777754 4444322111111100 0111
Q ss_pred CcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhH
Q psy1785 494 KPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKV 573 (629)
Q Consensus 494 ~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~ 573 (629)
......+..+++.+.. .++..++..++++++.+.|++. |++++ ++..+.+.+++.. . . .
T Consensus 282 ~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~-~---------~------~ 340 (401)
T 1fc4_A 282 PAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFTLA--GADHAIIPVMLGD-A---------V------V 340 (401)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEEC-H---------H------H
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCCCEEEEEcCC-h---------H------H
Confidence 1122333333443311 3677888889999999999998 88764 3455556666521 0 0 0
Q ss_pred HHHHHHHHHhcCcEEEeeeec--CCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 574 APKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 574 ~~~i~~~l~~~G~~~i~~~~~--~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|.++|..+...... ....+++|++++ ..+|++|++.+++.|+++.++
T Consensus 341 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 341 AQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp HHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence 135677888888543222111 111358999996 889999999999999987654
No 70
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.71 E-value=9.6e-16 Score=162.12 Aligned_cols=287 Identities=12% Similarity=0.064 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhCC-CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCC
Q psy1785 260 EHVLAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDN 338 (629)
Q Consensus 260 ~~~~~~l~~l~G~-~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~ 338 (629)
.++.+++++++|. +....++++|+|+++..++.+.. .|...|++...+|.++..++...|. +
T Consensus 70 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~ 132 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA--------------RPGAKVMAPVPGFVMYAMSAQFAGL---E 132 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC--------------CTTCEEEEEESCSCCSCHHHHTTTC---E
T ss_pred HHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc--------------CCCCEEEEcCCCHHHHHHHHHHcCC---e
Confidence 4566778899998 55689999999999887766432 1334566777888888888899998 9
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHc--CCeEEE--ecCccccc
Q psy1785 339 VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEY--DMADSV--TWNPHKLL 411 (629)
Q Consensus 339 v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~--~~~lhV--A~gg~~l~ 411 (629)
++.+|.++++.+|+++|+++|.+. .+.+|+.+...+.+|.+ +++++|+++|++| |+++++ +++....
T Consensus 133 ~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~- 206 (367)
T 3euc_A 133 FVGVPLRADFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ- 206 (367)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS-
T ss_pred EEEecCCCCCCCCHHHHHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc-
Confidence 999999999999999999999762 24466667888889988 5677888889999 999999 6664321
Q ss_pred cccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 412 TAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
.. .....+.. +.+.++.++||++......|+++..+ .+.......... + +
T Consensus 207 ~~--------~~~~~~~~-~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~-----------------~---~ 256 (367)
T 3euc_A 207 ES--------WMSRLTDF-GNLLVMRTVSKLGLAGIRLGYVAGDP-QWLEQLDKVRPP-----------------Y---N 256 (367)
T ss_dssp CC--------SGGGGGTC-TTEEEEEECCCTTSCSCCEEEEEECH-HHHHHHGGGCCS-----------------S---C
T ss_pred cc--------hHHHHhhC-CCEEEEecchhhcccccCceeeeeCH-HHHHHHHHhCCC-----------------C---C
Confidence 11 00000111 35688889999944445678887743 444332111100 0 0
Q ss_pred CCCcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHH
Q psy1785 492 GRKPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELL 570 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l 570 (629)
...+..+.+...+. .+.++++.++..++++++.+.|+++||+++. ++..+.+.+.+. .
T Consensus 257 ---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~~--~-------------- 315 (367)
T 3euc_A 257 ---VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARVP--D-------------- 315 (367)
T ss_dssp ---CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC--CCSSSEEEEECS--C--------------
T ss_pred ---CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC--C--------------
Confidence 12233333333332 4567888899999999999999999999853 344444445432 0
Q ss_pred hhHHHHHHHHHHhcCcEEEeeeec-CCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 571 HKVAPKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 571 ~~~~~~i~~~l~~~G~~~i~~~~~-~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.+.|.++|..+...... ....+++|++++ |++|++++++.|+++.+
T Consensus 316 ---~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 316 ---AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS----TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ---HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC----CHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC----CHHHHHHHHHHHHHHhc
Confidence 135677788888654332221 112368999984 89999999999998764
No 71
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.71 E-value=4.2e-16 Score=167.24 Aligned_cols=311 Identities=11% Similarity=0.058 Sum_probs=198.5
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCC-CCeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH-HHH
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQG-GDGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS-IKK 327 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S-i~k 327 (629)
.+|....+..++.+++++++|.+. .+.++ ++|||+++..++.+.. .|+ ++.++...|.. ...
T Consensus 72 ~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------------~~g-v~~v~~~~~~~~~~~ 136 (398)
T 2fyf_A 72 RQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------------DKR-SLHLTYGEFSAKFAS 136 (398)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------------SSC-EEEEECSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------------CCC-eEEEeCCHHHHHHHH
Confidence 456666677889999999999984 46788 9999999887776542 134 23335555533 233
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
.+...+.|. +++.|+++ +|.++.. .+ ...+.+|+.+..+|.+|.+.|+++|.++ +|+++++ ++
T Consensus 137 ~~~~~~~g~-~~~~v~~~-~g~~~~~----~i------~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~ 201 (398)
T 2fyf_A 137 AVSKNPFVG-EPIIITSD-PGSAPEP----QT------DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATS 201 (398)
T ss_dssp HHHHCTTSC-CCEEEECC-TTCCCCC----CC------CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTT
T ss_pred HHHHhCCCC-ceEEEecC-CCCCCCc----cc------cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEecc
Confidence 556663322 78899988 4543321 11 1245678888899999999999999887 8999999 55
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcC------CCCccccCCcCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA------SASYLFQKDKFYD 479 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~------~~~yl~~~~~~~~ 479 (629)
+...... .+.. +|+++.++||+++.|.++|+++++++ .+...... .+.|+...... .
T Consensus 202 ~~~~~~~--------------~~~~-~di~~~s~sK~~~~~gg~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~-~ 264 (398)
T 2fyf_A 202 GAGGLPV--------------DIAE-TDAYYFAPQKNFASDGGLWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAV-E 264 (398)
T ss_dssp TTTTSCC--------------CGGG-CSEEEECTTSTTCSCSSEEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHH-H
T ss_pred ccCCccc--------------Cccc-CcEEEEecCcccCCCCceEEEEECHH-HHHHhhcccccCCCCCcEEehHHHh-h
Confidence 5432211 1233 89999999999998867888888763 43322110 12233211000 0
Q ss_pred cccCCCCccCCCCCC-cchHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC--Cce-EEEEEeeC
Q psy1785 480 TKYDSGDKHIQCGRK-PDVLKFWFMWKAKGTDG-LEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP--ECT-NISFWYIP 554 (629)
Q Consensus 480 ~~~~~~~~~~~~sr~-~~al~~w~~l~~~G~~G-~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p--~~~-~v~F~~~p 554 (629)
.+..+ ... .+.. .....+..+++.+...| ++++.++..++++++.+.|++++|++++...| ..+ .++|++.
T Consensus 265 -~~~~~-~~~-~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~- 340 (398)
T 2fyf_A 265 -NSLKN-QTY-NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV- 340 (398)
T ss_dssp -HHTTT-CCS-SCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC-
T ss_pred -hcccC-CCC-CCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC-
Confidence 00000 000 1111 13345566676666666 89999999999999999999998998763113 345 6777763
Q ss_pred CCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 555 PSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
.+.. ..++.+.|.++|..+.......+ .+++|++++ ..+|++|++++++.|+++.++|
T Consensus 341 ~~~~---------------~~~l~~~L~~~gI~v~~g~~~~~-~~~iRis~~-~~~t~e~i~~~~~~l~~~l~~~ 398 (398)
T 2fyf_A 341 DDVD---------------AGTVAKILRANGIVDTEPYRKLG-RNQLRVAMF-PAVEPDDVSALTECVDWVVERL 398 (398)
T ss_dssp TTSC---------------HHHHHHHHHHTTCBCCSCCTTTC-SSEEEEECC-TTSCHHHHHHHHHHHHHHHHTC
T ss_pred CCCC---------------HHHHHHHHHHCCcEEecCcccCC-CCEEEEEec-CCCCHHHHHHHHHHHHHHHHhC
Confidence 2211 13567788888864322111111 358999996 7899999999999999987654
No 72
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.70 E-value=1.4e-15 Score=163.37 Aligned_cols=301 Identities=12% Similarity=0.078 Sum_probs=195.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..+++++||+++..++.+.+. .|...|+++..+|.++..++...|+ ++
T Consensus 66 ~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~g~---~~ 127 (399)
T 2oga_A 66 EGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGI-------------GPGDEVIVPSHTYIASWLAVSATGA---TP 127 (399)
T ss_dssp HHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCC-------------CCcCEEEECCCccHHHHHHHHHCCC---EE
Confidence 44556688888876 688999999988877765421 1344577788899999999999998 99
Q ss_pred EEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.+|.++ ++.+|+++|+++|.+ .+.+|+ .++.+|.+.|+++|.++|+++|+++++ +++.+.....
T Consensus 128 ~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~--- 195 (399)
T 2oga_A 128 VPVEPHEDHPTLDPLLVEKAITP------RTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRG--- 195 (399)
T ss_dssp EEECBCSSSSSBCHHHHHHHCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETT---
T ss_pred EEEecCCCCCCcCHHHHHHhcCC------CCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCC---
Confidence 9999987 578999999988853 233444 357799999999999999999999999 6654322211
Q ss_pred ccccccccccccCCcceEEEeCCC--CCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPH--KLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~H--K~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
+.++ .. .|.+++++| |+++.|-.+|+++++++++........ .+ .... .+. ......+.+
T Consensus 196 -------~~~~-~~-~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~-~~--g~~~----~~~--~~~~g~~~~ 257 (399)
T 2oga_A 196 -------RRIG-AG-SSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLR-NY--GSRQ----KYS--HETKGTNSR 257 (399)
T ss_dssp -------EETT-CT-TCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHH-BT--TCSS----TTC--CCSCCCBCC
T ss_pred -------eecc-cc-cCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHH-hc--Cccc----ccc--ccccccCCC
Confidence 1111 12 688888885 999864456777766555543321100 00 0000 000 001112223
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEE---EEEeeCCCCCCCCchhhHHHHHh
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNI---SFWYIPPSLRGKEDQADFNELLH 571 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v---~F~~~p~~~~~~~~~~~~~~~l~ 571 (629)
...+..++++..+ +.++++.++..++++++.+.|++++++++.. .|..... .|......
T Consensus 258 ~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~~~--------------- 319 (399)
T 2oga_A 258 LDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPV-TAPDTDPVWHLFTVRTER--------------- 319 (399)
T ss_dssp CCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCC-CCTTEECCCSSEEEECSS---------------
T ss_pred cCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccC-CCCCCcceeEEEEEECCC---------------
Confidence 4556666655443 4466778888889999999999988987654 3433221 23322110
Q ss_pred hHHHHHHHHHHhcCcEEEeee--ecC--------C------------ccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 572 KVAPKIKERMMKSGSMMITYQ--PIH--------A------------LPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 572 ~~~~~i~~~l~~~G~~~i~~~--~~~--------~------------~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
..++.+.|.++|...-... +.. + ..++||+++. +.+|++||+++++.|+++.+++
T Consensus 320 --~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 320 --RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIG-PHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp --HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCS-TTCCHHHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 1356777888886432211 100 0 0157999995 9999999999999999887653
No 73
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.70 E-value=1.7e-15 Score=161.14 Aligned_cols=305 Identities=13% Similarity=0.083 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+..++.+++++.+| .+....++++|+|+++..++.+... |...|++...+|.++..++...
T Consensus 69 ~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~ 134 (391)
T 4dq6_A 69 PDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTK--------------ANDKIMIQEPVYSPFNSVVKNN 134 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--------------TTCEEEECSSCCTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCCHHHHHHHHHc
Confidence 46778888999999999 5557899999999998877765421 3446778889999999999999
Q ss_pred CCCCCCEEEEecC--CCC--CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE--
Q psy1785 333 GLGSDNVYLIKTD--ARG--RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV-- 403 (629)
Q Consensus 333 Glg~~~v~~V~~d--~~g--~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV-- 403 (629)
|. +++.+|.+ +++ .+|+++|+++|.+ +.+|+.+...+.+|.+ +++++|+++|+++|+++++
T Consensus 135 g~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 204 (391)
T 4dq6_A 135 NR---ELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDE 204 (391)
T ss_dssp TC---EEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CC---eEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeec
Confidence 98 99999987 333 5999999988864 4567777788889999 7899999999999999999
Q ss_pred ecCccccccccccccccccccccccC-CcceEEEeCCCCCCCC-CCccEEEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIE-VVADSVTWNPHKLLTA-PQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~-~gaDsv~~~~HK~l~~-P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
++.....-..+ .. ....+..+ .+...++.++||+++. ...+|+++++++.+..........+
T Consensus 205 ~~~~~~~~g~~--~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~----------- 268 (391)
T 4dq6_A 205 IHSDIILKKHK--HI---PMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRI----------- 268 (391)
T ss_dssp TTTTCBCTTCC--CC---CGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHT-----------
T ss_pred cccccccCCCC--cc---CHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhh-----------
Confidence 66553321110 00 00010000 0144888999999974 3567888887644443221100000
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCCC
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLRG 559 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~~ 559 (629)
+...........+..+++. +.+.+++..++..++++++.+.|++ .|+++++. |..+.+. +.+...+..
T Consensus 269 ------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 338 (391)
T 4dq6_A 269 ------DIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRK--PEGTYLLWVDFSALGLS- 338 (391)
T ss_dssp ------TCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC--CSBSSEEEEECGGGCCC-
T ss_pred ------cCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecC--CCccEEEEEEhhhcCCC-
Confidence 0001111122333333443 4455788888899999999999988 78998764 4444443 443211110
Q ss_pred CCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 560 KEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.++|.++ |..+....... ...+++|++++ +++++|+.+++.|+++.
T Consensus 339 --------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 339 --------------DEELESILVQKGKVALNQGNSFGIGGSGYQRINLA---CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp --------------HHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc---CCHHHHHHHHHHHHHHh
Confidence 13567788888 86543322221 12368999985 58999999999998764
No 74
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.70 E-value=1.5e-15 Score=164.21 Aligned_cols=308 Identities=13% Similarity=0.086 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 256 SLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
..+..++.+++++.+|++ ....++++|+++++..++.+.+. |...|++...+|.++..++...|
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~--------------~gd~Vi~~~~~y~~~~~~~~~~g 164 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE--------------KGDAVLINSPVYYPFARTIRLND 164 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--------------TEEEEEEEESCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC--------------CCCEEEECCCCcHHHHHHHHHCC
Confidence 677788899999999954 46799999999999988876532 34467778888999999999999
Q ss_pred CCCCCEEEEecC-CCC--CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE--ec
Q psy1785 334 LGSDNVYLIKTD-ARG--RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 334 lg~~~v~~V~~d-~~g--~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV--A~ 405 (629)
. +++.+|.+ .++ .+|+++|+++|.+ ..+.+|+.....+.+|.+ +++++|+++|+++|+++++ ++
T Consensus 165 ~---~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~ 236 (421)
T 3l8a_A 165 H---RLVENSLQIINGRFEIDFEQLEKDIID-----NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIH 236 (421)
T ss_dssp E---EEEEEECEEETTEEECCHHHHHHHHHH-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred C---EEEeccccccCCCeeeCHHHHHHHhhc-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 8 89999986 344 7999999999974 135667778888999998 8899999999999999999 66
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
.+...-.... ..+..... ... +.+.++.+++|+++ ....+|.++++++++....... ...
T Consensus 237 ~~~~~~g~~~--~~~~~~~~-~~~-~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~----~~~----------- 297 (421)
T 3l8a_A 237 QDLALFGNTH--HSLNTLDA-SYK-DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYR----QLA----------- 297 (421)
T ss_dssp TTCBCTTCCC--CCGGGSCT-TGG-GTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH----HHH-----------
T ss_pred cccccCCCCC--ccHHHcCc-hhc-CcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHH----HHh-----------
Confidence 5533221100 00000000 011 36688999999997 4466799988855444322110 000
Q ss_pred CCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEE-EEeeCCCCCCCCch
Q psy1785 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNIS-FWYIPPSLRGKEDQ 563 (629)
Q Consensus 485 ~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~-F~~~p~~~~~~~~~ 563 (629)
.+..++.......+..+++. +.+.+++..++..++.+++.+.|++.|+++++. |..+.+. +.+...+...
T Consensus 298 --~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~--~~~~~~~~v~~~~~~~~~---- 368 (421)
T 3l8a_A 298 --NNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVME--PEGTYLVWLDFSAYAIAQ---- 368 (421)
T ss_dssp --TTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC--CSBSSEEEEECGGGTCCT----
T ss_pred --cccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC--CCeeEEEEEeccccCCCH----
Confidence 00111222333344444443 566688888899999999999999888998875 4443333 3332211111
Q ss_pred hhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 564 ADFNELLHKVAPKIKERMMK-SGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.++.++|.+ .|.++....... ...+++|++++ +++++|+.+++.|+++.+
T Consensus 369 -----------~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 369 -----------PQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA---TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp -----------THHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHC-
T ss_pred -----------HHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence 246677764 476543322221 12368999985 589999999999988754
No 75
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.70 E-value=7.5e-16 Score=164.95 Aligned_cols=308 Identities=15% Similarity=0.105 Sum_probs=194.2
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH-H--
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK-L-- 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k-a-- 328 (629)
.+....+|+.+.+++++++|.+.. .+++.+||+++..++.++.. |...|+++..+|.+... +
T Consensus 64 ~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~ 128 (405)
T 2vi8_A 64 CEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFTVLE--------------HGDTVLGMNLSHGGHLTHGSP 128 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCTTTTCT
T ss_pred chHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHHhcC--------------CCCEEEEecccccchhcccch
Confidence 355677888888999999998742 34445569999888776521 33456666677876543 1
Q ss_pred HHHcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 329 AAFEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
....|.+ -.++.++++ +++.+|+++|+++|.+. .+.+|+. .++..|...|+++|+++|+++|+++++ ++
T Consensus 129 ~~~~g~~-~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~--~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~ 200 (405)
T 2vi8_A 129 VNFSGVQ-YNFVAYGVDPETHVIDYDDVREKARLH-----RPKLIVA--AAAAYPRIIDFAKFREIADEVGAYLMVDMAH 200 (405)
T ss_dssp TSHHHHH-SEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred hhhccce-eEEEecccccccCCcCHHHHHHHHHhc-----CCeEEEE--eCCCCCccCCHHHHHHHHHHcCCEEEEEccc
Confidence 1122221 156667765 56889999999998752 1233443 345567878999999999999999999 66
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
+.+..... ....+++. +|+++.++||++++|.| |++++++ ++..........+.
T Consensus 201 ~~g~~~~~---------~~~~~~~~-~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~l~~~~~~~~-------------- 254 (405)
T 2vi8_A 201 IAGLVAAG---------LHPNPVPY-AHFVTTTTHKTLRGPRG-GMILCQE-QFAKQIDKAIFPGI-------------- 254 (405)
T ss_dssp THHHHHTT---------SSCCSTTT-CSEEEEESSSTTCCCSC-EEEEECH-HHHHHHHHHHTTTT--------------
T ss_pred cccccccC---------cCCCcccc-CCEEEEeccccCCCCCC-eEEEEcH-HHHHHHHhhhcccc--------------
Confidence 53222111 00012334 89999999999988887 8888764 44432211000010
Q ss_pred CccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchh
Q psy1785 486 DKHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQA 564 (629)
Q Consensus 486 ~~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~ 564 (629)
.++.. .....+..+++....+++++..++..++++++.+.|++. |++++.+....+.+.+.+.+.+..
T Consensus 255 ----~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------ 323 (405)
T 2vi8_A 255 ----QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLT------ 323 (405)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC------
T ss_pred ----cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCCCC------
Confidence 01111 123333455555445688999999999999999999998 998765112345555655321110
Q ss_pred hHHHHHhhHHHHHHHHHHhcCcEEEeeee----c-CCccceEEEeecC---CCCCHHHHHHHHHHHHHHhhc
Q psy1785 565 DFNELLHKVAPKIKERMMKSGSMMITYQP----I-HALPNFFRLVLQN---SALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 565 ~~~~~l~~~~~~i~~~l~~~G~~~i~~~~----~-~~~~~~lR~~~~n---~~~t~edid~l~~~i~~l~~~ 628 (629)
...+.+.|.++|..+..... . ....+++|+++.. +.++++|++++++.|+++.++
T Consensus 324 ---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 324 ---------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp ---------HHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 12466777788865432210 0 1123579999962 267899999999999987654
No 76
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.70 E-value=4.2e-15 Score=156.90 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=198.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+++++++|.+..+.++++|+|+++..++.+... |...|+++..+|.++...+...|. ++
T Consensus 70 ~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~ 132 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLD--------------TTTNTVMATPTFVQYRQNALIEGA---EV 132 (363)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCS--------------TTCEEEEEESSCHHHHHHHHHHTC---EE
T ss_pred HHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHcc--------------CCCEEEEcCCChHHHHHHHHHcCC---EE
Confidence 5667788999998778899999999998877765421 334566777889999999999999 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc--CCeEEE--ecCccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY--DMADSV--TWNPHKLLTAPQ 415 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~--~~~lhV--A~gg~~l~~~~~ 415 (629)
+.+|.++++.+|+++|++++.+ .+.+|+.+...+.+|.+-|++++.++++.+ |+++++ +++.... ....
T Consensus 133 ~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~ 205 (363)
T 3ffh_A 133 REIPLLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-PQPE 205 (363)
T ss_dssp EEEECCTTSCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-SCCC
T ss_pred EEecCCCCCCcCHHHHHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-cccc
Confidence 9999998899999999998853 366777788899999999999999999988 999999 6664332 1100
Q ss_pred cccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 416 QCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 416 ~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
+ .+... ... +-+.++.+++|+++.| ..+|++++++ ++.......... + .
T Consensus 206 --~-~~~~~--~~~-~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~-----------------~------~ 255 (363)
T 3ffh_A 206 --K-HEKLV--RTY-KNLIITRTFSKIYGLASARVGYGIADK-EIIRQLNIVRPP-----------------F------N 255 (363)
T ss_dssp --C-CGGGG--GTC-TTEEEEEESSSTTCCSSCCCEEEEECH-HHHHHHHHTCCS-----------------C------C
T ss_pred --C-HHHHh--hcC-CCEEEEeechhhhcCchhceeeeecCH-HHHHHHHHhCCC-----------------C------C
Confidence 0 00100 111 2457788899999743 4458888843 444332111100 0 0
Q ss_pred cchHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhH
Q psy1785 495 PDVLKFWFMWKAK-GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKV 573 (629)
Q Consensus 495 ~~al~~w~~l~~~-G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~ 573 (629)
...+..+.+...+ ..+.+++..++..++++++.+.|+++++++++. +..+.+.+++.. .
T Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~~~~~~~~~~---~--------------- 315 (363)
T 3ffh_A 256 TTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYP--ANGNFVLIDLGI---E--------------- 315 (363)
T ss_dssp CBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC--CCSSEEEEECSS---C---------------
T ss_pred CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECC--CCCeEEEEECCC---C---------------
Confidence 1223333333322 236678888889999999999999977998753 444555555421 0
Q ss_pred HHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 574 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 574 ~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..++.+.|.++|..+...... +..+++|++++ |++|++++++.|+++
T Consensus 316 ~~~~~~~l~~~gi~v~~g~~~-~~~~~iRis~~----~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 316 AGTIFSYLEKNGYITRSGAAL-GFPTAVRITIG----KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHHTTEECEETTTT-TCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEEeCccC-CCCCeEEEECC----CHHHHHHHHHHHHHh
Confidence 135677888888643332222 23469999984 899999999999875
No 77
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.70 E-value=1.6e-15 Score=162.67 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=199.9
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC--CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF--QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~--~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
|...+....+++.+.+++.+..|+ +..+.++|+|+|+++..++.+.+. |...|++...+|.++.
T Consensus 71 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~ 136 (407)
T 2zc0_A 71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLID--------------PGDVVITENPSYINTL 136 (407)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcC--------------CCCEEEEeCCChHHHH
Confidence 333345667777777777777785 346789999999999888776532 2335667778888999
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEE-EEeeCCCccccccCHH---HHHHHHHHcCCeEE
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMV-SATSGTTVLGAFDPIP---AIADICAEYDMADS 402 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~V-vat~Gtt~~G~idpl~---ei~~i~~~~~~~lh 402 (629)
.++...|. +++.+|.+++| +|+++|+++|.....++..+.+| +.....+.+|.+.|++ +|+++|+++|++++
T Consensus 137 ~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li 212 (407)
T 2zc0_A 137 LAFEQLGA---KIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLII 212 (407)
T ss_dssp HHHHTTTC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHcCC---EEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 99998898 99999998776 99999999997543333345454 4566788899998887 99999999999999
Q ss_pred E--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 403 V--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 403 V--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
+ +++...+-..+. . ....++.. +.+.++.+++|+++....+|++++++ ++..........+
T Consensus 213 ~De~~~~~~~~~~~~--~---~~~~~~~~-~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~---------- 275 (407)
T 2zc0_A 213 EDTAYNFMRYEGGDI--V---PLKALDNE-GRVIVAGTLSKVLGTGFRIGWIIAEG-EILKKVLMQKQPI---------- 275 (407)
T ss_dssp EECTTTTSBSSCSSC--C---CGGGGCSS-CCEEEEEESTTTTCTTSCCEEEECCH-HHHHHHHHHHTTT----------
T ss_pred EECCCcccccCCCCC--C---ChhhcCCC-CCEEEEcccccccCCCcceEEEecCH-HHHHHHHHHHHhh----------
Confidence 9 776643321100 0 01111111 24567788899999334589888864 4443321110000
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcC-h-hhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEEEEeeCCCC
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKG-T-DGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNISFWYIPPSL 557 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G-~-~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~F~~~p~~~ 557 (629)
+. ++.......+..+++... . +.+++..++..++++++.+.|++ .++++++. +.....+.+++. .+.
T Consensus 276 -------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 345 (407)
T 2zc0_A 276 -------DF-CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFFLP-EGA 345 (407)
T ss_dssp -------TS-SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEECS-TTC
T ss_pred -------cC-CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEEcC-CCC
Confidence 00 111111122222233210 2 45566777778889999999987 57877654 222334445542 211
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. ..++.++|.++ |..+....... ...+++|++++ .. |++||+.+++.|+++.++
T Consensus 346 ~---------------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 346 D---------------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFS-RP-SKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp C---------------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECS-SS-CTTHHHHHHHHHHHHHHH
T ss_pred C---------------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeC-CC-CHHHHHHHHHHHHHHHHH
Confidence 1 13567788888 85443222221 12368999996 33 899999999999887543
No 78
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.70 E-value=4.7e-15 Score=158.93 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|. ...++++|||+++..++.+.+. .|...|+++..+|.+...++...|. ++
T Consensus 35 ~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 96 (394)
T 1o69_A 35 NRFEQSVKDYSKS--ENALALNSATAALHLALRVAGV-------------KQDDIVLASSFTFIASVAPICYLKA---KP 96 (394)
T ss_dssp HHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCGGGTHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEECCCccHHHHHHHHHcCC---EE
Confidence 4455667788876 4689999999998888776411 1344678888999999999999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC-cccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN-PHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g-g~~l~~~~~~ 416 (629)
+.+++++++.+|+++|+++|.+. +..+.+|+.+. .+|..+|+++|.++|+++|+++++ ++. +......
T Consensus 97 ~~v~~~~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--- 167 (394)
T 1o69_A 97 VFIDCDETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNK--- 167 (394)
T ss_dssp EEECBCTTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---
T ss_pred EEEEeCCCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCc---
Confidence 99999988999999999998741 11233455543 789999999999999999999999 666 3322111
Q ss_pred ccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc-
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP- 495 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~- 495 (629)
... .+.. +|.++++.||.++ |.++|+++++++.+..........+.... ..+. ..+.+.++
T Consensus 168 -----~~~--~~~~-~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~----~~~~g~~~~ 229 (394)
T 1o69_A 168 -----ALG--TFGE-FGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC-----LHYE----HLDYGYNYR 229 (394)
T ss_dssp -----ETT--SSSS-EEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS-----SSCC----CSSCCCBCB
T ss_pred -----ccc--cccC-cEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC-----cccc----ccccCcccC
Confidence 000 1223 8999999999886 67899999876555443322111111000 0010 11122222
Q ss_pred -chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-----CceEEEEEeeCCC----CCCCCchhh
Q psy1785 496 -DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-----ECTNISFWYIPPS----LRGKEDQAD 565 (629)
Q Consensus 496 -~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-----~~~~v~F~~~p~~----~~~~~~~~~ 565 (629)
..+...+.+.. .+.+++.+++..++++++.+.|++. +++.. .+ .+.+++|++.+.. ..+.-.+..
T Consensus 230 ~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 304 (394)
T 1o69_A 230 LSNVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLD-ELENSRSNRWLSTALINFDKNELNACQKDINIS 304 (394)
T ss_dssp CCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCC-CCTTEECCCSSEEEEESCCGGGSCCCCEEEECC
T ss_pred cCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccC-CCCCCcceeEEEEEEecchhhcccccccccccc
Confidence 22333333332 3457788899999999999999886 66543 22 2224667653210 000000000
Q ss_pred HH-HHHhhHHHHHHHHHHhcCcEEEee-ee------cCCc---c---------ceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 566 FN-ELLHKVAPKIKERMMKSGSMMITY-QP------IHAL---P---------NFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 566 ~~-~~l~~~~~~i~~~l~~~G~~~i~~-~~------~~~~---~---------~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
+. ..+..-..++.+.|.++|...-.. .+ +... . ..+|+.+ ++.+|++|||+++++|+++
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~~~~l~~~ 383 (394)
T 1o69_A 305 QKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEISKLILKS 383 (394)
T ss_dssp CCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHHHHHHHHH
Confidence 00 000000135777888888543211 01 1110 0 2466666 5999999999999999987
Q ss_pred hh
Q psy1785 626 GH 627 (629)
Q Consensus 626 ~~ 627 (629)
..
T Consensus 384 ~~ 385 (394)
T 1o69_A 384 IK 385 (394)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 79
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.69 E-value=1.7e-15 Score=162.90 Aligned_cols=310 Identities=12% Similarity=0.083 Sum_probs=203.0
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCC--CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQG--GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~--~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
|...+....+++.+.+++.+..|++. .+.++++|+|+++..++.+.. .|...|+++..+|.++.
T Consensus 74 y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------------~~gd~Vl~~~~~~~~~~ 139 (406)
T 1xi9_A 74 YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------------DPGDEILVPGPSYPPYT 139 (406)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------------CTTCEEEEEESCCHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--------------CCCCEEEEcCCCCccHH
Confidence 33334556788888888888877643 578999999999888777652 13446777888899999
Q ss_pred HHHHHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeE
Q psy1785 327 KLAAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMAD 401 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~l 401 (629)
.++...|. +++.+|.++ .+.+|+++|+++|.+ .+.+|+.+...+.+|.+-| +++|+++|+++|+++
T Consensus 140 ~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~l 210 (406)
T 1xi9_A 140 GLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPV 210 (406)
T ss_dssp HHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHcCC---EEEEeecCCCcCCcCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 99999998 999999875 456899999998854 3556677778889998855 999999999999999
Q ss_pred EE--ecCccccccccccccccccccccccCCcc-eEEEeCCCCCCCCC-CccEEEEE-ecc----chhhhhhcCCCCccc
Q psy1785 402 SV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVA-DSVTWNPHKLLTAP-QQCSVFLT-RHQ----SVLTECHSASASYLF 472 (629)
Q Consensus 402 hV--A~gg~~l~~~~~~~~~~l~~~~~~i~~ga-Dsv~~~~HK~l~~P-~~~g~ll~-r~~----~~l~~~~~~~~~yl~ 472 (629)
++ +++.... ..+. . ... .+..+. |.++.++||+++.| +.+|++++ .++ .+........ .+.
T Consensus 211 i~De~~~~~~~-~~~~-~----~~~--~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~-~~~- 280 (406)
T 1xi9_A 211 ISDEIYDLMTY-EGEH-I----SPG--SLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA-RIR- 280 (406)
T ss_dssp EEECTTTTCBS-SSCC-C----CHH--HHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHH-HHT-
T ss_pred EEEcCcccccc-CCCC-C----CHH--HcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHH-Hhh-
Confidence 99 6666443 2100 0 001 111236 88999999999733 23788873 333 3433221100 000
Q ss_pred cCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEE-E
Q psy1785 473 QKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISF-W 551 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F-~ 551 (629)
+ +........+..+++ .+.+++++..++..++++++.+.|++.|+++++. |..+.++| +
T Consensus 281 --------------~---~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~ 340 (406)
T 1xi9_A 281 --------------L---CPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK--PQGAFYIFPK 340 (406)
T ss_dssp --------------C---CSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC--CCBSSEECCE
T ss_pred --------------c---CCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec--CCeeEEEEEe
Confidence 0 111112222223333 2456688888899999999999999988988653 44444444 3
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+ +... +. + ..++.++|. +.|..+....... ...+++|+++. +++++|+.+++.|+++.++
T Consensus 341 ~-~~~~-~~-~-----------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~---~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 341 I-EVGP-WK-N-----------DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp E-CSCS-CS-S-----------HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred c-CccC-CC-C-----------HHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHH
Confidence 3 2100 11 0 125666776 7786543322221 11358999984 8999999999999887654
No 80
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.69 E-value=2.1e-15 Score=160.77 Aligned_cols=308 Identities=13% Similarity=0.068 Sum_probs=200.7
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC--CCCC-eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF--QGGD-GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~--~~~~-g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+++.+.+++.+..|+ +..+ .++++||++++..++.+.. .|...|++...+|.++
T Consensus 59 y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------------~~gd~vl~~~~~~~~~ 124 (389)
T 1gd9_A 59 YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL--------------KDGEEVLIPTPAFVSY 124 (389)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC--------------CTTCEEEEEESCCTTH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC--------------CCCCEEEEcCCCchhH
Confidence 333345667888888888888885 4467 9999999999887765431 1344677788889999
Q ss_pred HHHHHHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHcCCe
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD---PIPAIADICAEYDMA 400 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id---pl~ei~~i~~~~~~~ 400 (629)
..+++..|. +++.+|.++ ++.+|+++|++++.+ .+.+|+.+...+.+|.+- ++++|+++|+++|++
T Consensus 125 ~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~ 195 (389)
T 1gd9_A 125 APAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLI 195 (389)
T ss_dssp HHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHCCC---EEEEeccCCccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 999999998 999999985 357999999988853 245666777888899886 599999999999999
Q ss_pred EEE--ecCcccccccccccccccccccc-ccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCc
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFLTRRNY-VIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDK 476 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~ 476 (629)
+++ +++....-..+. . ....+ +.. +.|+++.++||+++.| +.+|++++++ .+........ .+.
T Consensus 196 li~De~~~~~~~~~~~~-~----~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~~~----- 262 (389)
T 1gd9_A 196 VISDEVYEHFIYDDARH-Y----SIASLDGMF-ERTITVNGFSKTFAMTGWRLGFVAAPS-WIIERMVKFQ-MYN----- 262 (389)
T ss_dssp EEEECTTTTCBCTTCCC-C----CGGGSTTCG-GGEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHH-TTT-----
T ss_pred EEEehhhhhcccCCCCC-C----CHhhccCCC-CCEEEEecChhhcCCcccceEEEEECH-HHHHHHHHHH-hhh-----
Confidence 999 676644321100 0 01111 122 3899999999999744 3378888864 3433221100 000
Q ss_pred CCCcccCCCCccCCCCCCcchHHHHHHHHhc--Chh--hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EEEE
Q psy1785 477 FYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK--GTD--GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-ISFW 551 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~--G~~--G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~F~ 551 (629)
. .+ ...+..+.+...+ +.+ +++++.++..++++++.+.|++. |++++. |..+. +.+.
T Consensus 263 ---------~----~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~ 324 (389)
T 1gd9_A 263 ---------A----TC--PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVK--PKGAFYIFPR 324 (389)
T ss_dssp ---------T----CS--CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCC--CCBTTEECCB
T ss_pred ---------c----cC--CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecC--CCeeeEEEEe
Confidence 0 00 1122222222222 233 67888888899999999999998 887653 44333 2233
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.+.. ..++.++|. ++|..+....... ...+++|++++ . ++++|+.+++.|+++.++
T Consensus 325 ~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~-~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 325 IRDTGLT---------------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-T--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CGGGTCC---------------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-S--CHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCC---------------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHHHHHHh
Confidence 3210100 135677787 7786543322221 12358999986 2 899999999999887653
No 81
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.69 E-value=2.1e-15 Score=161.47 Aligned_cols=299 Identities=15% Similarity=0.151 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~ 336 (629)
.+..++.+++++++|.+ +.++++|||+++..++.+.. .|...|++...+|.+...+++..|.
T Consensus 88 ~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~~--------------~~gd~V~~~~p~~~~~~~~~~~~g~-- 149 (398)
T 3a2b_A 88 DIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCLM--------------GRNDYILLDERDHASIIDGSRLSFS-- 149 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHSS--------------CTTCEEEEETTCCHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--------------CCCCEEEECCccCHHHHHHHHHcCC--
Confidence 44467778899999874 79999999999888776542 1445678889999999999999998
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+++.+|. +|+++|++.+.+..+ + .+.+|+.....+.+|.+.|+++|.++|+++|+++++ +++.+.+-...
T Consensus 150 -~~~~v~~-----~d~~~l~~~l~~~~~-~-~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~ 221 (398)
T 3a2b_A 150 -KVIKYGH-----NNMEDLRAKLSRLPE-D-SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKG 221 (398)
T ss_dssp -EEEEECT-----TCHHHHHHHHHTSCS-S-SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGG
T ss_pred -ceEEeCC-----CCHHHHHHHHHhhcc-C-CceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCC
Confidence 8888885 689999988864211 1 356677777788899999999999999999999999 66543221000
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
. + +... .++..++|+++.++||+++ |.| |+++.++ ++..........|.. .++..
T Consensus 222 ~--~-~~~~--~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~-----------------~~~~~ 276 (398)
T 3a2b_A 222 A--G-TASH--FGLNDDVDLIMGTFSKSLA-SLG-GFVAGDA-DVIDFLKHNARSVMF-----------------SASMT 276 (398)
T ss_dssp C--C-HHHH--HTCGGGCSEEEEESSSTTC-SSC-EEEEECH-HHHHHHHHHCHHHHS-----------------SBCCC
T ss_pred C--c-hHhh--cCCCcCCeEEEeccccccc-CCC-cEEEeCH-HHHHHHHHhccccee-----------------cCCCC
Confidence 0 0 0011 0222227999999999998 656 8877754 444332111111110 01111
Q ss_pred c-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhH
Q psy1785 495 P-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKV 573 (629)
Q Consensus 495 ~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~ 573 (629)
. ....+..+++.+ +.+++..++..++++++.+.|++. |++++. |..+.+.+.+. .. . -
T Consensus 277 ~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~g~~~~~~~~-~~---------~------~ 335 (398)
T 3a2b_A 277 PASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA--TESPILPIFIR-SN---------E------K 335 (398)
T ss_dssp HHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS--CCSSEEEEECC-CH---------H------H
T ss_pred HHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC--CCCCEEEEEcC-CH---------H------H
Confidence 1 111233444432 234567788888999999999988 887653 45555555542 10 0 0
Q ss_pred HHHHHHHHHhcCcEEEeeeec--CCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 574 APKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 574 ~~~i~~~l~~~G~~~i~~~~~--~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|.++|..+...... ....+++|++++ ..++++|++.+++.|+++.++
T Consensus 336 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 336 TFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp HHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHHH
Confidence 135778888888654332211 112358999996 778999999999999887654
No 82
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.69 E-value=8.6e-16 Score=163.48 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+..+.++++|||+++..++.+... |...|++...+|.++..+++..|. ++
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 126 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLVG--------------PGDEVVVLEPFFDVYLPDAFLAGA---KA 126 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EE
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EE
Confidence 3555667788888766799999999999888776521 344577777889999999999998 99
Q ss_pred EEEecC---CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCccccc
Q psy1785 340 YLIKTD---ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLL 411 (629)
Q Consensus 340 ~~V~~d---~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~ 411 (629)
+.+|.+ +++.+|+++|++++.. .+.+|+.+...+.+|.+-| +++|+++|+++|+++++ ++....+
T Consensus 127 ~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~- 199 (381)
T 1v2d_A 127 RLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY- 199 (381)
T ss_dssp EEEECEEETTEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-
T ss_pred EEEeCCCCCccCCcCHHHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-
Confidence 999987 5678999999988742 3567777788888999865 89999999999999999 6665433
Q ss_pred cccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 412 TAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
..+ ..+ .. .+..+.|.++.++||+++.| +.+|++++++ ++........ .+. .+
T Consensus 200 g~~-~~~----~~--~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~-~~~--------------~~--- 253 (381)
T 1v2d_A 200 GER-PRR----LR--EFAPERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMR-QWT--------------SF--- 253 (381)
T ss_dssp SSC-CCC----HH--HHCTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHH-HHH--------------TS---
T ss_pred CCC-CCC----HH--HhcCCCEEEEeechhhcCCcccceEEEEeCH-HHHHHHHHHH-hhc--------------cc---
Confidence 210 000 00 01124899999999998744 3388888854 3433221100 000 00
Q ss_pred CCCCcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCce-EEEEEeeCCCCCCCCchhhHHH
Q psy1785 491 CGRKPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECT-NISFWYIPPSLRGKEDQADFNE 568 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~-~v~F~~~p~~~~~~~~~~~~~~ 568 (629)
+........+..+++... .+++++..++..++++++.+.|++. |++++. |..+ .+.+.+. .. +
T Consensus 254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~-~~--------~--- 318 (381)
T 1v2d_A 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYV--PEGTYFLMAELP-GW--------D--- 318 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC--CSBSSEEEEECT-TC--------C---
T ss_pred CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC--CCcceEEEEecC-hH--------h---
Confidence 011111222223333221 5678888899999999999999985 888765 4433 3334432 10 0
Q ss_pred HHhhHHHHHHHHHHhcCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 569 LLHKVAPKIKERMMKSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 569 ~l~~~~~~i~~~l~~~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.+.++|..+....... ...+++|++++ . ++++|+.+++.|+++.++
T Consensus 319 --------~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~-~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 319 --------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC-K--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp --------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC-S--CHHHHHHHHHHHHHHC--
T ss_pred --------HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeC-C--CHHHHHHHHHHHHHHHhh
Confidence 3445667786543322221 12368999996 3 899999999999887643
No 83
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.68 E-value=3e-15 Score=160.08 Aligned_cols=316 Identities=13% Similarity=0.049 Sum_probs=208.0
Q ss_pred HHHHHhcCCCccccccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCe
Q psy1785 236 QWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRL 313 (629)
Q Consensus 236 ~~lt~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~ 313 (629)
+.+...+......|...+....+++.+.+++.+..|++ ..+.++++|+|+++..++.+.. .|..
T Consensus 61 ~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--------------~~gd 126 (389)
T 1o4s_A 61 EEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--------------DPGD 126 (389)
T ss_dssp HHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--------------CTTC
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--------------CCCC
Confidence 33444443322234334456778888888888877873 4689999999999888876542 1334
Q ss_pred EEEEcCCcchHHHHHHHHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HH
Q psy1785 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IP 388 (629)
Q Consensus 314 vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ 388 (629)
.|++...+|.++..+++..|. +++.+|.++ ++.+|+++|+++|.+ .+.+|+.+...+.+|.+-| ++
T Consensus 127 ~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~ 197 (389)
T 1o4s_A 127 EVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLE 197 (389)
T ss_dssp EEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHH
Confidence 567777889999999999998 999999985 467999999988853 2556677778888999866 99
Q ss_pred HHHHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhc
Q psy1785 389 AIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHS 465 (629)
Q Consensus 389 ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~ 465 (629)
+|+++|+++|+++++ +++....-..+. + +.... +.. +.|.++.++||+++.| ..+|++++++ ++......
T Consensus 198 ~l~~~~~~~~~~li~Dea~~~~~~~g~~~--~-~~~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~l~~~~-~~~~~l~~ 270 (389)
T 1o4s_A 198 GLVRLAKKRNFYIISDEVYDSLVYTDEFT--S-ILDVS--EGF-DRIVYINGFSKSHSMTGWRVGYLISSE-KVATAVSK 270 (389)
T ss_dssp HHHHHHHHHTCEEEEECTTTTSBCSSCCC--C-HHHHC--SSS-TTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCC--C-HhhcC--CCC-CcEEEEeechhhcCCcccceEEEEeCH-HHHHHHHH
Confidence 999999999999999 666543211100 0 00110 112 4899999999999743 2378888855 33332211
Q ss_pred CCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCc
Q psy1785 466 ASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC 545 (629)
Q Consensus 466 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~ 545 (629)
....+ +-....+..+.+..++.. ++++..++..++++++.+.|++. |++++. |..
T Consensus 271 ~~~~~---------------------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~ 325 (389)
T 1o4s_A 271 IQSHT---------------------TSCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVE--PEG 325 (389)
T ss_dssp HHHHH---------------------TCSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCC--CSB
T ss_pred Hhhhc---------------------ccCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeec--CCc
Confidence 00000 001123444555555543 47888888899999999999998 887653 444
Q ss_pred eEEEE-EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 546 TNISF-WYIPPSLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 546 ~~v~F-~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
+.+++ ++ | . + ..++.++|. +.|..+....... ..+++|++++ +++++|+.+++.|+
T Consensus 326 ~~~~~~~~-~--~----~-----------~~~l~~~l~~~~gi~v~~g~~f~-~~~~~Ris~~---~~~~~l~~~l~~l~ 383 (389)
T 1o4s_A 326 AFYLFFKV-R--G----D-----------DVKFCERLLEEKKVALVPGSAFL-KPGFVRLSFA---TSIERLTEALDRIE 383 (389)
T ss_dssp SSEEEEEC-S--S----C-----------HHHHHHHHHHHHCEECEEGGGGT-CTTEEEEECC---SCHHHHHHHHHHHH
T ss_pred ceEEEEeC-C--C----C-----------HHHHHHHHHHHCCEEEeCchhcC-CCCeEEEEEe---CCHHHHHHHHHHHH
Confidence 43333 33 2 1 0 125667776 7786543322222 2358999996 28999999999998
Q ss_pred HHhhc
Q psy1785 624 RLGHD 628 (629)
Q Consensus 624 ~l~~~ 628 (629)
++.++
T Consensus 384 ~~l~~ 388 (389)
T 1o4s_A 384 DFLNS 388 (389)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 87653
No 84
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.68 E-value=6.2e-15 Score=158.43 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=187.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH---H
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK---L 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k---a 328 (629)
.+....+|..+.+++++++|.+..+..+++ ||+++..++.+.. .|...|++...+|.+... .
T Consensus 66 ~~~~~~~~~~~~~~la~~~g~~~~~i~~~s-Gt~a~~~~~~~~~--------------~~gd~vl~~~~~~~~~~~~~~~ 130 (417)
T 3n0l_A 66 CEFVDEIETLAIERCKKLFNCKFANVQPNS-GSQANQGVYAALI--------------NPGDKILGMDLSHGGHLTHGAK 130 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHHHHS--------------CTTCEEEEECC-----------
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcceEecc-HHHHHHHHHHHhc--------------CCCCEEEecccccccccchhhh
Confidence 355677888889999999998654444544 4898887776552 134457777778876554 3
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
....|.+. .++.+++++++.+|+++|+++|.+. .+.+|+.+.++ .|.+.|+++|+++|++||+++++ ++.
T Consensus 131 ~~~~g~~~-~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~ 202 (417)
T 3n0l_A 131 VSSSGKMY-ESCFYGVELDGRIDYEKVREIAKKE-----KPKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHI 202 (417)
T ss_dssp -----CCS-EEEEECCCTTSSCCHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred hhhhccee-eeEeccCCCCCCcCHHHHHHHHHhc-----CCeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccc
Confidence 33444321 4566777878899999999999742 24456555544 49999999999999999999999 543
Q ss_pred ccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCC
Q psy1785 407 PHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 486 (629)
....... .... .+.. +|+++.++||++++|.+ |+++.+++.+....... ...
T Consensus 203 ~g~~~~~--------~~~~-~~~~-~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~----~~~------------- 254 (417)
T 3n0l_A 203 AGLVVAG--------EHPS-PFPY-AHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSA----IFP------------- 254 (417)
T ss_dssp HHHHHTT--------SSCC-CTTT-CSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHH----HTT-------------
T ss_pred hhhhhcc--------cCCC-cccc-ceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhh----hCC-------------
Confidence 3332211 0000 1234 89999999999988774 78777754444332110 000
Q ss_pred ccCCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 487 KHIQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 487 ~~~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
+..++-. .....++.++.....++++++.++..++++++.+.|++ .|++++......+.+.+.+.+.+..
T Consensus 255 -~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~------- 325 (417)
T 3n0l_A 255 -GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREFS------- 325 (417)
T ss_dssp -TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSSC-------
T ss_pred -cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCCC-------
Confidence 0011111 12344455566555678899999999999999999998 5898764123334444444332211
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeee-ecC----CccceEEEeec---CCCCCHHHHHHHHHHHHHHhh
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQ-PIH----ALPNFFRLVLQ---NSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~-~~~----~~~~~lR~~~~---n~~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.+.|...-... +.. -..+.+|+++. ....+++||+.+++.|+++.+
T Consensus 326 --------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 326 --------GKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp --------HHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 1245667777886432111 111 01246999873 234689999999999988754
No 85
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.68 E-value=3.7e-15 Score=156.64 Aligned_cols=292 Identities=12% Similarity=0.037 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCC
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDN 338 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~ 338 (629)
..++.+++++++|.+..+.++++|+|+++..++.+... |...|++...+|.++..++...|. +
T Consensus 53 ~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~ 115 (354)
T 3ly1_A 53 ILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYAS--------------LEAQLVIPELTYGDGEHFAKIAGM---K 115 (354)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSSCTHHHHHHHHTTC---E
T ss_pred hHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhC--------------CCCeEEECCCCchHHHHHHHHcCC---E
Confidence 35677889999998777899999999998877765421 334567788899999999999998 9
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--cCCeEEE--ecCcccccccc
Q psy1785 339 VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE--YDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 339 v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~--~~~~lhV--A~gg~~l~~~~ 414 (629)
++.+|.++++.+|+++|+++|.+ +..+.+|+.+...+.+|.+-|++++.++++. +|+++++ +++....-..+
T Consensus 116 ~~~~~~~~~~~~d~~~l~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~ 191 (354)
T 3ly1_A 116 VTKVKMLDNWAFDIEGLKAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRF 191 (354)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTC
T ss_pred EEEecCCCCCCCCHHHHHHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhcccccc
Confidence 99999998899999999999863 1246677778889999999999999998888 9999999 66643321110
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
.+. +.. ..-..+.+.++.++||+++ ....+|+++..+ .+.......... .
T Consensus 192 --~~~-~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~---------------------~-- 242 (354)
T 3ly1_A 192 --RSI-SPM--ITQGAENIILLKTFSKIHAMAGMRVGYAVAHP-TVIALMGRYVAG---------------------E-- 242 (354)
T ss_dssp --CCS-HHH--HHTTCSSEEEEEESSSTTCCGGGCCEEEECCH-HHHHHHGGGTTC---------------------S--
T ss_pred --CCH-HHH--hhhcCCCEEEEeeChhhccChhhhheeeecCH-HHHHHHHHhcCC---------------------C--
Confidence 000 000 0011025688999999997 445678887743 444332111000 0
Q ss_pred CcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 494 KPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 494 ~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
....+..+.+...+. .+.+++..++..++++++.+.|++. ++++. ++..+.+.+.+.. .
T Consensus 243 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~--~~~~~~~~~~~~~-~---------------- 302 (354)
T 3ly1_A 243 KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL--PSEGNFVFHQLVV-P---------------- 302 (354)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCCSSEEEEECSS-C----------------
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC--CCCceEEEEECCC-C----------------
Confidence 112333333333332 2567888888899999999999987 77754 3444445554421 0
Q ss_pred HHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 573 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 573 ~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.+.|.++|.. +. ....+..+++|++++ +++|++++++.|+++.+
T Consensus 303 -~~~~~~~l~~~gi~-v~-g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 303 -LKDYQTHMADAGVL-IG-RAFPPADNWCRISLG----TPQEMQWVADTMREFRK 350 (354)
T ss_dssp -HHHHHHHHHHTTEE-CC-CCCTTCTTEEEEECC----CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEE-Ee-ecCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 13567778888854 33 333334569999985 79999999999998765
No 86
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.67 E-value=1.7e-15 Score=163.08 Aligned_cols=312 Identities=13% Similarity=0.091 Sum_probs=204.0
Q ss_pred HhcCCCccccccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEE
Q psy1785 240 DALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYT 317 (629)
Q Consensus 240 ~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~ 317 (629)
..+......|...+....+++.+.+++.+..|++ ..+.++++|||+++..++.+.. .|...|++
T Consensus 66 ~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------------~~gd~Vl~ 131 (409)
T 2gb3_A 66 YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------------NPGDEILV 131 (409)
T ss_dssp HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------------CTTCEEEE
T ss_pred HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--------------CCCCEEEE
Confidence 4444322234434456778888888888777754 3678999999999988877652 13446777
Q ss_pred cCCcchHHHHHHHHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHH
Q psy1785 318 SEDAHYSIKKLAAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIAD 392 (629)
Q Consensus 318 s~~~H~Si~kaa~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~ 392 (629)
...+|.++..++...|. +++.+|.++ +..+ +++|+++|.+ .+.+|+.+...+.+|.+ +++++|++
T Consensus 132 ~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~ 201 (409)
T 2gb3_A 132 LEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVE 201 (409)
T ss_dssp EESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred cCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHH
Confidence 88899999999999998 999999985 3344 7788877753 35567777778888987 45899999
Q ss_pred HHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCC
Q psy1785 393 ICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
+|+++|+++++ +++....-..+. +. .. ++.. .|+++.++||+++.| ..+|+++++++++..........
T Consensus 202 ~~~~~~~~li~Dea~~~~~~~~~~~--~~---~~--~~~~-~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~ 273 (409)
T 2gb3_A 202 IAERHGLFLIVDEVYSEIVFRGEFA--SA---LS--IESD-KVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG 273 (409)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSCCC--CG---GG--SCCT-TEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECcccccccCCCCC--Cc---cc--cCCC-CEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhc
Confidence 99999999999 666543211100 00 11 1233 799999999999744 34788888763444322110000
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK--GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN 547 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~--G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~ 547 (629)
+ + ....+..+.+..++ +.+++++..++..++++++.+.|++. |++++. .|..+.
T Consensus 274 ~-----------------~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~ 329 (409)
T 2gb3_A 274 R-----------------L-----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFT-KPSGAF 329 (409)
T ss_dssp S-----------------C-----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBC-CCSBSS
T ss_pred c-----------------C-----CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-Cceeee-CCCeeE
Confidence 0 0 11222233333333 56778888889999999999999998 887623 355444
Q ss_pred EEE-EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc------CcEEEeeeecC----CccceEEEeecCCCCCHHHHH
Q psy1785 548 ISF-WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS------GSMMITYQPIH----ALPNFFRLVLQNSALDHSDMD 616 (629)
Q Consensus 548 v~F-~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~------G~~~i~~~~~~----~~~~~lR~~~~n~~~t~edid 616 (629)
+++ ++ + + . + ..++.++|.++ |..+....... ...+++|+++. +++++|+
T Consensus 330 ~~~~~~-~-~---~-~-----------~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~---~~~e~i~ 389 (409)
T 2gb3_A 330 YITAEL-P-V---E-D-----------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLS 389 (409)
T ss_dssp EEEEEC-S-S---S-C-----------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHH
T ss_pred EEEEEe-C-C---C-C-----------HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC---CCHHHHH
Confidence 444 33 2 1 1 0 13566777766 75443322221 11368999984 8999999
Q ss_pred HHHHHHHHHhh
Q psy1785 617 YFIDEIERLGH 627 (629)
Q Consensus 617 ~l~~~i~~l~~ 627 (629)
.+++.|+++.+
T Consensus 390 ~~~~~l~~~l~ 400 (409)
T 2gb3_A 390 RAIDVLMEGLK 400 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 87
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.67 E-value=2.2e-15 Score=160.80 Aligned_cols=304 Identities=13% Similarity=0.104 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ .+++++|||+++..++.+.+. .|...|+++..+|.+...+++..|+ ++
T Consensus 42 ~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 103 (393)
T 1mdo_A 42 QELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI-------------GEGDEVITPSMTWVSTLNMIVLLGA---NP 103 (393)
T ss_dssp HHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC-------------CCCCEEEeCCCccHhHHHHHHHCCC---EE
Confidence 45556688888875 689999999998877765421 1344678889999999999999998 99
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++++ +.+|+++|+++|.+ .+.+|+.+ +.+|.+.|+++|.++|+++|+++++ +++.+.....
T Consensus 104 ~~v~~~~~~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--- 171 (393)
T 1mdo_A 104 VMVDVDRDTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG--- 171 (393)
T ss_dssp EEECBCTTTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT---
T ss_pred EEEeccCCcCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECC---
Confidence 99999875 68999999998853 24445443 4789999999999999999999999 6653322211
Q ss_pred ccccccccccccCCc-ceEEEeCCC--CCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccC---C
Q psy1785 417 CSVFLTRRNYVIEVV-ADSVTWNPH--KLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHI---Q 490 (629)
Q Consensus 417 ~~~~l~~~~~~i~~g-aDsv~~~~H--K~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~---~ 490 (629)
+.+ + .|.+++++| |+++.+ ..|+++++++++......... +-..... .......+.+.. .
T Consensus 172 -------~~~----~~~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 237 (393)
T 1mdo_A 172 -------RHI----GARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF-HGLGVDA-WDRQSGGRAPQAEVLA 237 (393)
T ss_dssp -------EET----TSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB-TTEECC------------CCEESS
T ss_pred -------eec----CCCCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh-cCCcccc-hhhhcccccccccccc
Confidence 111 3 799999999 999764 467776654444433211110 0000000 000000000110 1
Q ss_pred CC--CCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC------CceEEEEEeeCC--CCCCC
Q psy1785 491 CG--RKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP------ECTNISFWYIPP--SLRGK 560 (629)
Q Consensus 491 ~s--r~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p------~~~~v~F~~~p~--~~~~~ 560 (629)
.+ .+...+...+.+.. .+++++..++..++++++.+.|++.+ +++.. .| ....+++++.+. +..
T Consensus 238 ~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-- 311 (393)
T 1mdo_A 238 PGYKYNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLS-LPSWEHIHAWHLFIIRVDEARCGIT-- 311 (393)
T ss_dssp CCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECC-CCSSCEECCCSCEEEECCHHHHSSC--
T ss_pred cCccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-ccccc-CCCCCCCceeEEEEEEecccccccC--
Confidence 11 12334444333332 35678888899999999999999985 88753 22 122455554210 100
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeee-ec------------CCc-------cceEEEeecCCCCCHHHHHHHHH
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQ-PI------------HAL-------PNFFRLVLQNSALDHSDMDYFID 620 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~-~~------------~~~-------~~~lR~~~~n~~~t~edid~l~~ 620 (629)
..++.+.|.++|...-... +. ... ..+||+++. +.+|++||+++++
T Consensus 312 -------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~-~~~t~~~i~~~~~ 377 (393)
T 1mdo_A 312 -------------RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLF-PDMTESDFDRVIT 377 (393)
T ss_dssp -------------HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCC-TTCCHHHHHHHHH
T ss_pred -------------HHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCC-CCCCHHHHHHHHH
Confidence 1356778888886432111 10 010 137999995 8999999999999
Q ss_pred HHHHHhh
Q psy1785 621 EIERLGH 627 (629)
Q Consensus 621 ~i~~l~~ 627 (629)
.|+++.+
T Consensus 378 ~l~~~~~ 384 (393)
T 1mdo_A 378 ALHQIAG 384 (393)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 88
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.67 E-value=7.3e-16 Score=165.15 Aligned_cols=305 Identities=15% Similarity=0.109 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH---HHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI---KKLA 329 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si---~kaa 329 (629)
+....+|..+.+++++++|.+.. -+++.+||+++..++.++.. |...|+++..+|.+. ..++
T Consensus 65 ~~~~~~e~~ar~~la~~~g~~~~-~i~~~sGt~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~ 129 (407)
T 2dkj_A 65 EVIDRVESLAIERAKALFGAAWA-NVQPHSGSQANMAVYMALME--------------PGDTLMGMDLAAGGHLTHGSRV 129 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCTT
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc-eEEecchHHHHHHHHHHhcC--------------CCCEEEEecccccCccchHHHH
Confidence 44446777777899999998742 24555677787777766521 334567777788766 3444
Q ss_pred HHcCCCCCCEEEEec--C-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--e
Q psy1785 330 AFEGLGSDNVYLIKT--D-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--T 404 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~--d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A 404 (629)
...|. .++.++. + +++.+|+++|+++|.+. .+.+|+.+ +...|.+.|+++|.++|+++|+++++ +
T Consensus 130 ~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~--~p~~~~~~~l~~i~~l~~~~~~~li~Dea 199 (407)
T 2dkj_A 130 NFSGK---LYKVVSYGVRPDTELIDLEEVRRLALEH-----RPKVIVAG--ASAYPRFWDFKAFREIADEVGAYLVVDMA 199 (407)
T ss_dssp SHHHH---HSEEEEECCCTTTSSCCHHHHHHHHHHH-----CCSEEEEC--CSSCCSCCCHHHHHHHHHHHTCEEEEECT
T ss_pred HhcCc---eEEEEecCCCcccCccCHHHHHHHHhhc-----CCeEEEEe--ccccCCCCCHHHHHHHHHHcCCEEEEEcc
Confidence 44554 3444554 4 36789999999999742 13344442 23335888999999999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
++.+..... .... .++. +|+++.++||++++|.+ |+++++++++..........+.
T Consensus 200 ~~~g~~~~~--------~~~~-~~~~-~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~------------- 255 (407)
T 2dkj_A 200 HFAGLVAAG--------LHPN-PLPY-AHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGI------------- 255 (407)
T ss_dssp TTHHHHHTT--------CSCC-CTTT-CSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTT-------------
T ss_pred ccccccccC--------ccCC-cccc-ccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcccc-------------
Confidence 665332211 0000 1234 89999999999988875 8888874444433211100000
Q ss_pred CCccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCch
Q psy1785 485 GDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQ 563 (629)
Q Consensus 485 ~~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~ 563 (629)
.++... ....+..+++....++++++.++..++++++.+.|++. |++++.++...+.+++++...+..
T Consensus 256 -----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----- 324 (407)
T 2dkj_A 256 -----QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPKGLT----- 324 (407)
T ss_dssp -----CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC-----
T ss_pred -----cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcccCCC-----
Confidence 011111 12244555655445788999999999999999999998 898775223455666665321100
Q ss_pred hhHHHHHhhHHHHHHHHHHhcCcEEEeeee-----cCCccceEEEeecCC---CCCHHHHHHHHHHHHHHhh
Q psy1785 564 ADFNELLHKVAPKIKERMMKSGSMMITYQP-----IHALPNFFRLVLQNS---ALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~-----~~~~~~~lR~~~~n~---~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.++|........ .....+++|++++.. ..|++|++++++.|+++.+
T Consensus 325 ----------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 386 (407)
T 2dkj_A 325 ----------GKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALL 386 (407)
T ss_dssp ----------HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHh
Confidence 13567778888865433211 112235899998521 4899999999999988654
No 89
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.67 E-value=4.2e-15 Score=159.73 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH----HHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA----AFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa----~~lGlg 335 (629)
.++.+.+++++|.+ ..+++++||+++..++.+... |...|+++...|.+....+ ...|+
T Consensus 68 ~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~- 130 (398)
T 1gc0_A 68 NLLEARMASLEGGE--AGLALASGMGAITSTLWTLLR--------------PGDEVLLGNTLYGCTFAFLHHGIGEFGV- 130 (398)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCSHHHHHHHHTGGGGTC-
T ss_pred HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhc--------------CCCEEEEeCCCchhHHHHHHHHHHHcCC-
Confidence 45556788888876 578888889998887776521 3345778888999887765 45677
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+++.++.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ ++....+..+
T Consensus 131 --~~~~~~~~-----d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~ 197 (398)
T 1gc0_A 131 --KLRHVDMA-----DLQALEAAMTP------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP 197 (398)
T ss_dssp --EEEEECTT-----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG
T ss_pred --EEEEECCC-----CHHHHHHhcCC------CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 88888763 88888888753 466788888999999999999999999999999999 6665443211
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
+..++|.++.++||+++.|.. +|+++.+++ .+...+.....++.
T Consensus 198 --------------~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~------------------- 243 (398)
T 1gc0_A 198 --------------LELGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMT------------------- 243 (398)
T ss_dssp --------------GGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHT-------------------
T ss_pred --------------hhhCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccC-------------------
Confidence 123599999999999998876 688877654 33211110000000
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc-c------------C---CCceEEEEEeeCC
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL-D------------E---PECTNISFWYIPP 555 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~-~------------~---p~~~~v~F~~~p~ 555 (629)
+-....+..|.+++.+ +.+..+.++..++++++.+.|++.++++-+. + + ...++++|.+...
T Consensus 244 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (398)
T 1gc0_A 244 GAVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG 321 (398)
T ss_dssp CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH
T ss_pred CCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC
Confidence 0012345566665544 4566777888888899999988876654221 0 0 1356677765310
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEee--e--------e--------------cCCc-cceEEEeecCCCC
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITY--Q--------P--------------IHAL-PNFFRLVLQNSAL 610 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~--~--------~--------------~~~~-~~~lR~~~~n~~~ 610 (629)
. ..+.+.+.+.|...... . + ..|. .+++|+++. ..+
T Consensus 322 -----------~-------~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~ 382 (398)
T 1gc0_A 322 -----------I-------GAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LED 382 (398)
T ss_dssp -----------H-------HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSC
T ss_pred -----------H-------HHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCC
Confidence 0 12233444444332210 0 0 0011 368999997 789
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1785 611 DHSDMDYFIDEIERLG 626 (629)
Q Consensus 611 t~edid~l~~~i~~l~ 626 (629)
++++|+.+.++|++++
T Consensus 383 ~~~~i~~l~~al~~~a 398 (398)
T 1gc0_A 383 IDDLLADVQQALKASA 398 (398)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998763
No 90
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.67 E-value=2.4e-14 Score=150.70 Aligned_cols=289 Identities=11% Similarity=0.062 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+++++++|.+....++++|+|+++..++... ..|++...+|.++..++...|. ++
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~------------------d~vi~~~~~~~~~~~~~~~~g~---~~ 122 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF------------------EKILIIVPSYAEYEINAKKHGV---SV 122 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC------------------SEEEEEESCCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc------------------CcEEEecCChHHHHHHHHHcCC---eE
Confidence 45677788888987778999999999988776533 2356667789999999999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+.+|.++++.+++++|++++.+ +.+|+.+...+.+|.+-| +.+|+++|+++|+++++ ++.....- .+
T Consensus 123 ~~~~~~~~~~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~ 194 (361)
T 3ftb_A 123 VFSYLDENMCIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS 194 (361)
T ss_dssp EEEECCTTSCCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT
T ss_pred EEeecCcccCCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc
Confidence 9999999989999888888754 346677778888998865 66677788899999999 66543321 10
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
. + .+... +.. +...++.+++|.++.| ...|.+++.++.+.......... +
T Consensus 195 ~--~-~~~~~--~~~-~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~-----------------~------ 245 (361)
T 3ftb_A 195 S--S-FVGEI--KNY-SCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP-----------------W------ 245 (361)
T ss_dssp S--S-SGGGT--TTC-SSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT-----------------T------
T ss_pred c--c-hhHhc--ccC-CCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC-----------------C------
Confidence 0 0 00100 111 2457788999999743 55788776665555432111100 0
Q ss_pred CcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcE-EEccCCCceEEEEEeeCCCCCCCCchhhHHHHHh
Q psy1785 494 KPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFK-LVLDEPECTNISFWYIPPSLRGKEDQADFNELLH 571 (629)
Q Consensus 494 ~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~-l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~ 571 (629)
....+..+.+...+. .+.+++..++..++++++.+.|+++|+++ +. ++..+.+.+++.. ..
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~--~~------------- 308 (361)
T 3ftb_A 246 NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF--SPHANFVLCRLEN--IS------------- 308 (361)
T ss_dssp CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE--CCSSSEEEEEESS--SC-------------
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec--CCCCeEEEEEcCC--CC-------------
Confidence 112344444444443 45678888889999999999999999998 55 3555556665532 10
Q ss_pred hHHHHHHHHHHhcCcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 572 KVAPKIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 572 ~~~~~i~~~l~~~G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
..++.+.|.++|..+.......+ ..+++|++++ ++++++.+++.|+++.+.|
T Consensus 309 --~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~l 361 (361)
T 3ftb_A 309 --GEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK----DEKKNTKFLRALKGVENNL 361 (361)
T ss_dssp --HHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHhcC
Confidence 13567788888865433222221 1368999985 8899999999999987654
No 91
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.67 E-value=5.3e-15 Score=156.20 Aligned_cols=300 Identities=14% Similarity=0.100 Sum_probs=188.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCC-Ce-EEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH--HHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGG-DG-IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS--IKK 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~-~g-~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S--i~k 327 (629)
+|....+.+++.+++++++|.+.. +. ++|+|+|+++..++.+... |...|++....|++ +..
T Consensus 44 ~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~ 109 (362)
T 2c0r_A 44 GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK--------------EGQTANYVMTGSWASKALK 109 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC--------------CCCeEEEEecCcHhHHHHH
Confidence 455666677899999999999764 54 5678999998777664321 22234444455555 334
Q ss_pred HHHHcCCCCCCEEEEecCC---CC-CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHcCCeEE
Q psy1785 328 LAAFEGLGSDNVYLIKTDA---RG-RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF-DPIPAIADICAEYDMADS 402 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~---~g-~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i-dpl~ei~~i~~~~~~~lh 402 (629)
.++..| +++.|+++. .+ .+|.++++ |. ..+.+|+.+..+|.+|.+ +|+++| +|++++
T Consensus 110 ~~~~~g----~~~~v~~~~~~~~~~~~~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vi 171 (362)
T 2c0r_A 110 EAKLIG----DTHVAASSEASNYMTLPKLQEIQ--LQ------DNAAYLHLTSNETIEGAQFKAFPDT------GSVPLI 171 (362)
T ss_dssp HHHHHS----CEEEEEECGGGTTCSCCCGGGCC--CC------TTEEEEEEESEETTTTEECSSCCCC------TTSCEE
T ss_pred HHHHhC----CeEEEecccccccccCCCHHHcc--cC------CCcCEEEEeCCcCccceeccccccc------CCCEEE
Confidence 555555 678888762 23 35665543 31 246778888889999994 888887 899999
Q ss_pred E--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 403 V--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 403 V--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
| +++.+.... .+.. .|.++.++||+++ |.|+|+++++++ .+.......+ ++.... .
T Consensus 172 vD~a~~~~~~~~--------------~~~~-~d~~~~s~~K~~g-~~G~G~l~~~~~-~~~~l~~~~~-~~~~~~----~ 229 (362)
T 2c0r_A 172 GDMSSDILSRPF--------------DLNQ-FGLVYAGAQKNLG-PSGVTVVIVRED-LVAESPKHLP-TMLRYD----T 229 (362)
T ss_dssp EECTTTTTSSCC--------------CGGG-CSEEEEETTTTTC-CSSCEEEEEEGG-GSSSCCTTSC-GGGCHH----H
T ss_pred EEChhhccCCcc--------------chhH-CcEEEEecccccc-CcCcEEEEEcHH-HHhhccccCc-hHHhHH----H
Confidence 9 655432211 1233 5999999999997 788999999764 3332211111 221000 0
Q ss_pred ccCCCCccCCCCCC-cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCc-EEEccC--CCceEEEEEeeCC
Q psy1785 481 KYDSGDKHIQCGRK-PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGF-KLVLDE--PECTNISFWYIPP 555 (629)
Q Consensus 481 ~~~~~~~~~~~sr~-~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~-~l~~~~--p~~~~v~F~~~p~ 555 (629)
....+ ...++-. .....+..+++.+... |++++.++..++++++.+.|++++++ ++..++ +...+++|++..
T Consensus 230 ~~~~~--~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (362)
T 2c0r_A 230 YVKNN--SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS- 306 (362)
T ss_dssp HHHTT--TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-
T ss_pred Hhhcc--CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-
Confidence 00000 0011111 2345556666665554 79999999999999999999998546 875411 234567776521
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+ . -..++.++|.++|.+...... . .+.+|++++ ..+|++|++++++.|+++.+
T Consensus 307 ~---------~------~~~~~~~~L~~~gi~~~~g~~--~-~~~iRis~~-~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 307 E---------E------LEKEFVKASEQEGFVGLKGHR--S-VGGLRASIY-NAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp H---------H------HHHHHHHHHHHTTEESCBCCT--T-TCSEEEECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred c---------c------hHHHHHHHHHHCCCeeccCCC--C-CCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 1 0 013567778888864321111 1 246999996 78899999999999998764
No 92
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.67 E-value=9.9e-15 Score=154.84 Aligned_cols=304 Identities=11% Similarity=0.060 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+..++.+++++.+| .+....++++|+|+++..++.+... |...|++...+|.++..++...
T Consensus 61 ~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~ 126 (383)
T 3kax_A 61 PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTK--------------ENESVLVQPPIYPPFFEMVTTN 126 (383)
T ss_dssp CTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCC--------------TTCEEEECSSCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCC--------------CCCEEEEcCCCcHHHHHHHHHc
Confidence 45677888889999999 4456899999999998877765421 3446778889999999999999
Q ss_pred CCCCCCEEEEecCCCC---CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--e
Q psy1785 333 GLGSDNVYLIKTDARG---RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--T 404 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g---~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A 404 (629)
|. +++.+|.++++ .+|+++|+++|.. .+.+|+.+...+.+|.+-| +.+|+++|+++|+++++ +
T Consensus 127 g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~ 197 (383)
T 3kax_A 127 NR---QLCVSPLQKQNDTYAIDFEHLEKQFQQ------GVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEI 197 (383)
T ss_dssp TC---EEEECCCEEETTEEECCHHHHHHHHTT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CC---EEEeccceecCCcEEEcHHHHHHHhCc------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEcc
Confidence 98 99999987433 4999999999832 3445666778888999866 55666669999999999 6
Q ss_pred cCccccccccccccccccccccccC-CcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIE-VVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~-~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
+.....-.... . ....+.-+ .+.+.++.++||.++ ....+|.+++.++.+..........+
T Consensus 198 ~~~~~~~g~~~-~----~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~------------ 260 (383)
T 3kax_A 198 HSDIIYADHTH-T----PFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQ------------ 260 (383)
T ss_dssp TTTCBCTTCCC-C----CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT------------
T ss_pred ccccccCCCCc-e----eHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhc------------
Confidence 65533211100 0 00010000 125688999999998 44567888875544443221100000
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAK--GTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLR 558 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~--G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~ 558 (629)
+. . ....+..+.+...+ +.+.+++..++..++++++.+.|++ +|+++++. |..+.+. +.+...+..
T Consensus 261 -----~~-~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 330 (383)
T 3kax_A 261 -----GF-H--GLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMK--PEGSFLLWIDCSALNLS 330 (383)
T ss_dssp -----TC-C--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC--CSBSSEEEEECGGGCCC
T ss_pred -----cc-C--CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec--CCceEEEEEEccccCCC
Confidence 00 0 11223333333333 3455788888889999999999998 78998764 4444443 333211111
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.++|. +.|..+....... ...+++|++++ +++++|+.+++.|+++.
T Consensus 331 ---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~---~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 331 ---------------QDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG---CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp ---------------HHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS---SCHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc---CCHHHHHHHHHHHHHHh
Confidence 135677787 5786543322221 12368999986 48999999999998764
No 93
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.67 E-value=4.7e-15 Score=158.01 Aligned_cols=308 Identities=12% Similarity=0.049 Sum_probs=199.1
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+++.+.+++.+.+|++ .. +.++++|+|+++..++.+.. .|...|++...+|.++
T Consensus 63 y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------------~~gd~vl~~~p~~~~~ 128 (386)
T 1u08_A 63 YAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------------RNGDEVICFDPSYDSY 128 (386)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------------CTTCEEEEEESCCTTH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--------------CCCCEEEEeCCCchhH
Confidence 4333456778888888888888864 45 89999999999887776542 1334567777888899
Q ss_pred HHHHHHcCCCCCCEEEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeE
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMAD 401 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~l 401 (629)
..+++..|. +++.+|.++ ++.+|+++|+++|.. .+.+|+.+...+.+|.+-| +++|+++|+++|+++
T Consensus 129 ~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 199 (386)
T 1u08_A 129 APAIALSGG---IVKRMALQPPHFRVDWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFV 199 (386)
T ss_dssp HHHHHHTTC---EEEEEECCTTTCCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHcCC---EEEEeecCcccCcCCHHHHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEE
Confidence 999999998 999999976 578999999998842 3556777778888998865 688999999999999
Q ss_pred EE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCC
Q psy1785 402 SV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFY 478 (629)
Q Consensus 402 hV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~ 478 (629)
++ +++...+-..+. .+ +.... + ..+.|.++.++||+++.| +.+|++++++ ++........ .+.
T Consensus 200 i~De~~~~~~~~g~~~-~~-~~~~~--~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~~~------- 265 (386)
T 1u08_A 200 ISDEVYEHINFSQQGH-AS-VLAHP--Q-LRERAVAVSSFGKTYHMTGWKVGYCVAPA-PISAEIRKVH-QYL------- 265 (386)
T ss_dssp EEECTTTTCBCCSSCC-CC-GGGSH--H-HHTTEEEEEEHHHHTTCGGGCCEEEECCH-HHHHHHHHHH-HHH-------
T ss_pred EEEccccccccCCCCC-cC-hhccc--C-ccCcEEEEecchhhcCCcccceEEEEcCH-HHHHHHHHHH-Hhh-------
Confidence 99 666533211100 00 00000 0 124899999999999743 3378888764 3333221100 000
Q ss_pred CcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCc-eEEEEEeeCCCC
Q psy1785 479 DTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC-TNISFWYIPPSL 557 (629)
Q Consensus 479 ~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~-~~v~F~~~p~~~ 557 (629)
+. +........+..+++. +.+.+++..++..++++++.+.|++. |+++.. |.. ..+.+++....
T Consensus 266 ---------~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~~~~~- 330 (386)
T 1u08_A 266 ---------TF-SVNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILP--CEGTYFLLVDYSAVS- 330 (386)
T ss_dssp ---------TS-SCCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECC--CCBSSEEEEECTTTC-
T ss_pred ---------cc-CCChHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC--CCceEEEEEecCCCC-
Confidence 00 0111122223334443 35678888888999999999999987 888654 443 34455542110
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.. + ..++.++|. +.|..+....... ...+++|+++. +++++|+.+++.|++
T Consensus 331 -~~-~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 331 -TL-D-----------DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERLRQ 385 (386)
T ss_dssp -CS-C-----------HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHHTT
T ss_pred -CC-C-----------HHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc---CCHHHHHHHHHHHhh
Confidence 00 0 124566665 5686543322221 12468999995 389999999988764
No 94
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.66 E-value=2.4e-14 Score=152.93 Aligned_cols=312 Identities=15% Similarity=0.079 Sum_probs=190.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..+++++||+++..++.+.+... ..|+ .|...|+++..+|.++..++...|. ++
T Consensus 37 ~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~-----~~~~--~~g~~Vi~~~~~~~~~~~~~~~~g~---~~ 104 (390)
T 3b8x_A 37 KQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTK-----KPRL--KKGDEIIVPAVSWSTTYYPLQQYGL---RV 104 (390)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSS-----SCSC--CTTCEEEEESSSCHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhh-----hcCC--CCcCEEEECCCCcHHHHHHHHHcCC---EE
Confidence 44455678888876 68999999999888877653110 0111 2445688889999999999999998 99
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++++ +.+|+++|+++|.+ .+.+|+.+ +..|..+|+++|.++|+++|+++++ +++.+.....
T Consensus 105 ~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--- 172 (390)
T 3b8x_A 105 KFVDIDINTLNIDIESLKEAVTD------STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNN--- 172 (390)
T ss_dssp EEECBCTTTCSBCHHHHHHHCCT------TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETT---
T ss_pred EEEecCccccCcCHHHHHHHhCc------CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECC---
Confidence 99999876 89999999998854 24455554 3678899999999999999999999 6653332211
Q ss_pred ccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC-CCcccc---C-----CcCCCcccCCCCc
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS-ASYLFQ---K-----DKFYDTKYDSGDK 487 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~-~~yl~~---~-----~~~~~~~~~~~~~ 487 (629)
+..|....+.+++....|.+++|.+ |+++++++.+........ ..+-.+ . ............+
T Consensus 173 -------~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
T 3b8x_A 173 -------KCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKF 244 (390)
T ss_dssp -------EETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCB
T ss_pred -------cccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccce
Confidence 1111111144566544455555655 777777644332211100 000000 0 0000000000000
Q ss_pred cCCCCCC--cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-CceEEEE--EeeCCCCCCCCc
Q psy1785 488 HIQCGRK--PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-ECTNISF--WYIPPSLRGKED 562 (629)
Q Consensus 488 ~~~~sr~--~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-~~~~v~F--~~~p~~~~~~~~ 562 (629)
. ..+.+ ...+..++++.. .+.+++..++..++++++.+.|+++|++++.. ++ ..+.+.| .+.+.. +..
T Consensus 245 ~-~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~- 317 (390)
T 3b8x_A 245 V-LPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQ-ETGESSWFGFSFIIKKDS--GVI- 317 (390)
T ss_dssp C-SCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEECC-CCSBCCCCEEEEEECTTS--CCC-
T ss_pred e-ccccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC-CCCCcccEEEEEEecCcC--ccc-
Confidence 0 12222 345666666655 36788899999999999999999999998764 32 2333333 332110 110
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEee-------e-ec-C--------Cc-------cceEEEeecCCCCCHHHHHHH
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITY-------Q-PI-H--------AL-------PNFFRLVLQNSALDHSDMDYF 618 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~-------~-~~-~--------~~-------~~~lR~~~~n~~~t~edid~l 618 (629)
..++.+.|.++|...-.. . +. . .. ...||+++. +.+|++|||++
T Consensus 318 -----------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~t~~di~~i 385 (390)
T 3b8x_A 318 -----------RKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNH-QIELFDEIDYL 385 (390)
T ss_dssp -----------HHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECC-SSCCHHHHHHH
T ss_pred -----------HHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCC-CCCCHHHHHHH
Confidence 125667777777532110 1 11 0 00 136999995 99999999999
Q ss_pred HHHH
Q psy1785 619 IDEI 622 (629)
Q Consensus 619 ~~~i 622 (629)
++.|
T Consensus 386 ~~~l 389 (390)
T 3b8x_A 386 REVL 389 (390)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9876
No 95
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.66 E-value=8.4e-15 Score=158.94 Aligned_cols=322 Identities=12% Similarity=0.115 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVG----FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL 328 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G----~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka 328 (629)
+....+++.+.+++.+..| .+....++++||+++|..++.+.+. |...|++...+|.++..+
T Consensus 86 ~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~ 151 (435)
T 3piu_A 86 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--------------PGEAVLIPTPYYPGFDRD 151 (435)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC--------------CCCeEEECCCccccHHHH
Confidence 3345667777777766655 3456899999999999888776532 334577778889998887
Q ss_pred HH-HcCCCCCCEEEEecCCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHcCCeEE
Q psy1785 329 AA-FEGLGSDNVYLIKTDAR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD---PIPAIADICAEYDMADS 402 (629)
Q Consensus 329 a~-~lGlg~~~v~~V~~d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id---pl~ei~~i~~~~~~~lh 402 (629)
+. ..|. +++.++.+++ ..+|+++|+++|.+..+++..+.+|+.+...+.+|.+- ++++|.++|++||++++
T Consensus 152 ~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 228 (435)
T 3piu_A 152 LKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228 (435)
T ss_dssp TTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHhcCC---EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 77 6787 9999999864 46899999999988766666677788888888899884 45888889999999999
Q ss_pred E--ecCccccccccccccccccc-cccccC-----CcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCcccc
Q psy1785 403 V--TWNPHKLLTAPQQCSVFLTR-RNYVIE-----VVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQ 473 (629)
Q Consensus 403 V--A~gg~~l~~~~~~~~~~l~~-~~~~i~-----~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~ 473 (629)
+ ++++..+-..+. .+. ... .+.+++ ..-..++.++||.++.| ..+|+++++++.+.... .....+.
T Consensus 229 ~Dea~~~~~~~~~~~-~~~-~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~-~~~~~~~-- 303 (435)
T 3piu_A 229 SDEIYSGTAFSSPSF-ISV-MEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAA-TKMSSFG-- 303 (435)
T ss_dssp EECTTGGGCCSSSCC-CCH-HHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHH-HHHGGGS--
T ss_pred EeccccccccCCCCC-cCH-HHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHH-HHHhhcC--
Confidence 9 665543322110 000 000 000000 11347889999999843 56788888665443322 1100010
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCc-eEEEE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPEC-TNISF 550 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~-~~v~F 550 (629)
.+.......+...+.... .+.+++..++..++.+++.+.|++. |++++. +.. ..+.+
T Consensus 304 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~ 363 (435)
T 3piu_A 304 -----------------LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLN--GNAGLFCWV 363 (435)
T ss_dssp -----------------CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECC--CCSSSEEEE
T ss_pred -----------------CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccC--CCeeEEEEE
Confidence 011111111112222111 2345667778888999999999987 888764 444 33444
Q ss_pred EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 551 ~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.+.. ..... ... ...++.++|.++ |..+....... ...+++|+++. .. ++++|+.+++.|+++.++
T Consensus 364 ~l~~-~~~~~----~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~-~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 364 DMRH-LLRSN----TFE-----AEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp ECGG-GSSSS----SHH-----HHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SS-CHHHHHHHHHHHHHHHHH
T ss_pred Eccc-ccccC----Cch-----hHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEee-CC-CHHHHHHHHHHHHHHHHH
Confidence 4321 11000 000 113567777776 86543322221 22468999995 44 999999999999887653
No 96
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.66 E-value=7e-15 Score=157.30 Aligned_cols=306 Identities=12% Similarity=-0.016 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVGF--QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~--~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+++.+.+++.+.+|+ +..+.++++|+|+++..++.+.. .|...|++...+|.++..++...
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--------------~~gd~vl~~~p~~~~~~~~~~~~ 133 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------------KPGDGVIIITPVYYPFFMAIKNQ 133 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------------CTTCEEEECSSCCTHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--------------CCCCEEEEcCCCcHhHHHHHHHc
Confidence 566777777788777884 44678999999999887776542 13445777888899999999988
Q ss_pred CCCCCCEEEEecC-CCC--CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--e
Q psy1785 333 GLGSDNVYLIKTD-ARG--RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--T 404 (629)
Q Consensus 333 Glg~~~v~~V~~d-~~g--~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A 404 (629)
|. +++.+|.+ ++| .+|+++|+++|.+ ..+.+|+.+...+.+|.+-| +++|+++|+++|+++++ +
T Consensus 134 g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 205 (399)
T 1c7n_A 134 ER---KIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEI 205 (399)
T ss_dssp TC---EEEECCCEEETTEEECCHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECT
T ss_pred CC---EEEecccccCCCCEEEcHHHHHHHhcc-----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 88 89999886 444 5999999998862 13556667788888999988 99999999999999999 6
Q ss_pred cCccccccccccccccccccccccC---CcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIE---VVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~---~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
++....-..+ .. ... .+. .+.+.++.+++|+++.| ..+|+++++++++..........+
T Consensus 206 ~~~~~~~g~~--~~---~~~--~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~---------- 268 (399)
T 1c7n_A 206 HFDLIMPGYE--HT---VFQ--SIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDAT---------- 268 (399)
T ss_dssp TTTCBCTTCC--CC---CGG--GSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT----------
T ss_pred ccccccCCCC--cc---cHH--HcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhc----------
Confidence 6654321110 00 011 111 12568889999999844 347888887654444321110000
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCC
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLR 558 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~ 558 (629)
+..+........+..++.. +.+.+++..++..++++++.+.|++ +|+++++. +..+.++ +.+...+..
T Consensus 269 -------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 338 (399)
T 1c7n_A 269 -------SGMPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL--IEGTYLQWIDFRALKMD 338 (399)
T ss_dssp -------TCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC--CSBSSEEEEECGGGCCC
T ss_pred -------ccCCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec--CCceEEEEEEcccCCCC
Confidence 0001111112222223332 4567788888889999999999998 88987653 4444443 443211100
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.+.|. ++|..+....... ...+++|++++. ++++|+.+++.|+++.+
T Consensus 339 ---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~---~~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 339 ---------------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA---PSSVIQESLERLNKALK 391 (399)
T ss_dssp ---------------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc---CHHHHHHHHHHHHHHHH
Confidence 135677786 6786543322221 123589999963 27899999999887654
No 97
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.66 E-value=1.8e-14 Score=153.27 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
...++.+.+++++|.+ ..+++.+||+++..++.+.. .|...|+++...|.++..+++..|.
T Consensus 85 ~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~--------------~~gd~v~~~~~~~~~~~~~~~~~g~--- 145 (384)
T 1bs0_A 85 VHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM--------------AKEDRIAADRLSHASLLEAASLSPS--- 145 (384)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC--------------CTTCEEEEETTCCHHHHHHHHTSSS---
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC--------------CCCcEEEEcccccHHHHHHHHHcCC---
Confidence 3456677788888886 57778888999887765431 1344678888999999999999888
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccc
Q psy1785 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQ 415 (629)
Q Consensus 338 ~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~ 415 (629)
+++.+|. +|+++|++.|.+. ...+.+|+.....+.+|.+.|+++|.++|+++|+++++ +++-+.. ...
T Consensus 146 ~~~~~~~-----~d~~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~- 215 (384)
T 1bs0_A 146 QLRRFAH-----NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVI-GEQ- 215 (384)
T ss_dssp EEEEECT-----TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-SGG-
T ss_pred CEEEeCC-----CCHHHHHHHHHhc---CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCccccee-cCC-
Confidence 8888874 5899998888642 11245677777788899999999999999999999999 6543321 100
Q ss_pred cccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc
Q psy1785 416 QCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP 495 (629)
Q Consensus 416 ~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~ 495 (629)
.-+ + ...++ .+.|.++.++||+++ |.+ |++++++ ++..........|... ......
T Consensus 216 ~~~-~--~~~~~--~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~~----------------~~~~~~ 271 (384)
T 1bs0_A 216 GRG-S--CWLQK--VKPELLVVTFGKGFG-VSG-AAVLCSS-TVADYLLQFARHLIYS----------------TSMPPA 271 (384)
T ss_dssp GCC-H--HHHTT--CCCSEEEEESSSTTS-SCC-EEEEECH-HHHHHHHHHCHHHHSS----------------BCCCHH
T ss_pred CCc-h--HHhcC--CCCcEEEeeccchhh-ccC-cEEEeCH-HHHHHHHHhchhhhcC----------------CCCCHH
Confidence 000 0 01111 238999999999998 555 7777754 4443321111111100 001111
Q ss_pred chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHH
Q psy1785 496 DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAP 575 (629)
Q Consensus 496 ~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~ 575 (629)
....+..+++.+....+++..++..++++++.+.|++. ++++.. +..+.+.+++.. . . -..
T Consensus 272 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~-~-------------~--~~~ 332 (384)
T 1bs0_A 272 QAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD--SCSAIQPLIVGD-N-------------S--RAL 332 (384)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS--CCSSBCCEEEES-H-------------H--HHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC--CCCCEEEEEeCC-H-------------H--HHH
Confidence 22233344544322255778888999999999999987 787652 344444455421 0 0 013
Q ss_pred HHHHHHHhcCcEEEeeeec--CCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 576 KIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 576 ~i~~~l~~~G~~~i~~~~~--~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
++.++|.++|..+...... ....+++|++++ ..+|++|++++++.|++++
T Consensus 333 ~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~~ 384 (384)
T 1bs0_A 333 QLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGNG 384 (384)
T ss_dssp HHHHHHHHTTEECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHhhC
Confidence 5777888888543222111 112268999996 8889999999999998764
No 98
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.65 E-value=4e-14 Score=151.59 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ...++ .+|+.+|..++...... .|...|+++..+|.++..+++..|. ++
T Consensus 94 ~~l~~~la~~~~~~-~~i~~-~sG~~a~~~~~~~l~~~------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 156 (401)
T 2bwn_A 94 RRLEAEIAGLHQKE-AALVF-SSAYNANDATLSTLRVL------------FPGLIIYSDSLNHASMIEGIKRNAG---PK 156 (401)
T ss_dssp HHHHHHHHHHTTCS-EEEEE-SCHHHHHHHHHHHHHHH------------STTCEEEEETTCCHHHHHHHHHSCC---CE
T ss_pred HHHHHHHHHHhCCC-cEEEE-CCcHHHHHHHHHHHhcC------------CCCCEEEECchhhHHHHHHHHHcCC---eE
Confidence 55667788888864 34445 55555777666543221 1334677888999999999999998 89
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.+|.+ |+++|++.+..... ..+.+|+.+...+.+|.+.|+++|.++|+++|+++++ +++.+.+ .+ ...
T Consensus 157 ~~v~~~-----d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-~~-~g~ 227 (401)
T 2bwn_A 157 RIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY-GP-RGA 227 (401)
T ss_dssp EEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-ST-TSC
T ss_pred EEEcCC-----CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccccc-CC-CCc
Confidence 999975 78999988865211 2466788889999999999999999999999999999 6653221 11 111
Q ss_pred ccccccccccc-CCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcc
Q psy1785 418 SVFLTRRNYVI-EVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 496 (629)
Q Consensus 418 ~~~l~~~~~~i-~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~ 496 (629)
+. +... ++ +. .|.+..+++|.++.|- |.+... +.+..........+.+. ..+....
T Consensus 228 ~~-~~~~--~~~~~-~~i~~~s~sK~~~~~G--G~~~~~-~~~~~~l~~~~~~~~~~----------------~~~~~~~ 284 (401)
T 2bwn_A 228 GV-AERD--GLMHR-IDIFNGTLAKAYGVFG--GYIAAS-ARMVDAVRSYAPGFIFS----------------TSLPPAI 284 (401)
T ss_dssp CH-HHHH--TCGGG-CSEEEEESSSTTCSCC--EEEEEC-HHHHHHHHHHCHHHHTS----------------BCCCHHH
T ss_pred ee-eecc--Ccccc-CcEEEeechhhccCCC--CEEecC-HHHHHHHHHhCcCceec----------------CCCCHHH
Confidence 11 1111 22 23 6889999999998753 666553 33333211101111100 0111223
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHH
Q psy1785 497 VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPK 576 (629)
Q Consensus 497 al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~ 576 (629)
...+..+++.+...|++++.++..++++++.+.|++. |++++. +..+.++|.+.. . . -..+
T Consensus 285 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~-~-------------~--~~~~ 345 (401)
T 2bwn_A 285 AAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID--HGSHIVPVVIGD-P-------------V--HTKA 345 (401)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC--CSSSCEEEECCC-H-------------H--HHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC--CCCCeEEEEeCC-h-------------H--HHHH
Confidence 4455667777766788899999999999999999987 887654 455666665421 0 0 0135
Q ss_pred HHHHHH-hcCcEEEeeeecCC---ccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 577 IKERMM-KSGSMMITYQPIHA---LPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 577 i~~~l~-~~G~~~i~~~~~~~---~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
+.++|. +.|..+ ......+ ..+++|++++ ..+|++||+++++.|+++.+++
T Consensus 346 ~~~~L~~~~gi~v-~~~~~~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 346 VSDMLLSDYGVYV-QPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp HHHHHHHHHCEEC-CEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhcCCEEE-eecCCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHhc
Confidence 677775 678543 2211111 1148999996 8899999999999999887653
No 99
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=8.3e-15 Score=157.69 Aligned_cols=311 Identities=14% Similarity=0.087 Sum_probs=203.0
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+++.+.+++.+.+|++ .. +.++++|+|+++..++.+... |...|++...+|.++
T Consensus 58 y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~--------------~gd~Vl~~~~~y~~~ 123 (411)
T 2o0r_A 58 YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE--------------PGSEVLLIEPFYDSY 123 (411)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCcHhH
Confidence 3333445678888888888888864 34 799999999998887765421 334577778889999
Q ss_pred HHHHHHcCCCCCCEEEEecCCC---CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCC
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDAR---GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDM 399 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~~---g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~ 399 (629)
..++...|. +++.+|.+++ +.+|+++|+++|.. .+.+|+.+...+.+|.+-| +++|+++|+++|+
T Consensus 124 ~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~ 194 (411)
T 2o0r_A 124 SPVVAMAGA---HRVTVPLVPDGRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANL 194 (411)
T ss_dssp HHHHHHTTC---EEEEEECEEETTEEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---EEEEeeccccccCCCCCHHHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999998 9999998753 57999999998853 3556777778889999865 5899999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCc
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDK 476 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~ 476 (629)
++++ +++...+-..+. . ....+.-..+.|.++.++||+++.| ..+|++++++ ++........ .+.
T Consensus 195 ~li~De~~~~~~~~g~~~-~----~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~~~----- 262 (411)
T 2o0r_A 195 VVITDEVYEHLVFDHARH-L----PLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA-ELIAGVRAAK-QYL----- 262 (411)
T ss_dssp EEEEECTTTTCBCTTCCC-C----CGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH-HHHHHHHHHH-HHH-----
T ss_pred EEEEEccccccccCCCCC-c----ChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH-HHHHHHHHHH-hhc-----
Confidence 9999 666543211100 0 0111100124899999999999743 3388888754 4443221100 000
Q ss_pred CCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCce-EEEEEeeCC
Q psy1785 477 FYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECT-NISFWYIPP 555 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~-~v~F~~~p~ 555 (629)
+. ++.......+..+++. +.+.+++..++..++++++.+.|++. |+++.. |..+ .+.+.+...
T Consensus 263 -----------~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~~~~ 326 (411)
T 2o0r_A 263 -----------SY-VGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD--SYGTYFLCADPRPL 326 (411)
T ss_dssp -----------TS-CCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC--CCBSSEEEEECGGG
T ss_pred -----------cC-CCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC--CCeeEEEEEecCCC
Confidence 00 1111222333444543 36678888888999999999999987 888654 4444 445554321
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeec-CC-----------ccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPI-HA-----------LPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~-~~-----------~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
.+. + ..++.++|. +.|..+...... .. ..+++|+++. ++++||+.+++.|
T Consensus 327 --~~~-~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~---~~~e~i~~~~~~l 389 (411)
T 2o0r_A 327 --GYD-D-----------STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC---KRDDTLDEAIRRL 389 (411)
T ss_dssp --TCC-C-----------HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC---SCHHHHHHHHHHH
T ss_pred --CCC-C-----------HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec---CCHHHHHHHHHHH
Confidence 000 0 124566665 568654432222 11 2368999985 2899999999999
Q ss_pred HHHhh
Q psy1785 623 ERLGH 627 (629)
Q Consensus 623 ~~l~~ 627 (629)
+++.+
T Consensus 390 ~~~~~ 394 (411)
T 2o0r_A 390 SVLAE 394 (411)
T ss_dssp GGGGC
T ss_pred HHHHh
Confidence 87654
No 100
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.65 E-value=7.9e-15 Score=154.95 Aligned_cols=286 Identities=10% Similarity=0.075 Sum_probs=195.4
Q ss_pred HHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEE
Q psy1785 261 HVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVY 340 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~ 340 (629)
++.+++++++|.+..+.++++|+|+++..++.+... |...|++...+|.++..++...|. +++
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~ 131 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLN--------------SKNAFLQAGVTFAMYEIYAKQCGA---KCY 131 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSSCCTHHHHHHHHHTC---EEE
T ss_pred HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhC--------------CCCEEEEeCCChHHHHHHHHHcCC---EEE
Confidence 566778889998777899999999998877665421 344677888899999999999998 999
Q ss_pred EEec-CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHH--HcCCeEEE--ecCcccc--ccc
Q psy1785 341 LIKT-DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICA--EYDMADSV--TWNPHKL--LTA 413 (629)
Q Consensus 341 ~V~~-d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~--~~~~~lhV--A~gg~~l--~~~ 413 (629)
.+|+ ++++ +|+++|++++.. .+.+|+.+...+.+|.+-|++++.++++ ++|+++++ +++...+ ...
T Consensus 132 ~v~~~~~~~-~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~ 204 (365)
T 3get_A 132 KTQSITHNL-DEFKKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSK 204 (365)
T ss_dssp ECSSSSCCH-HHHHHHHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGG
T ss_pred EEecCCCCC-CCHHHHHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCc
Confidence 9998 6778 999999998862 3667777888999999999999999988 67999999 6554331 110
Q ss_pred -cccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 -PQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 -~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
+... +..- +.. +.+.++.++||+++ .....|++++ ++++.......... +
T Consensus 205 ~~~~~---~~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~-----------------~---- 256 (365)
T 3get_A 205 KHLEP---CELI--KEF-DNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAP-----------------F---- 256 (365)
T ss_dssp GCCCH---HHHH--HHC-TTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCT-----------------T----
T ss_pred ccccH---hHHh--ccC-CCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCC-----------------C----
Confidence 0000 0000 011 36788999999997 4456888887 44444332111100 0
Q ss_pred CCCcchHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHH
Q psy1785 492 GRKPDVLKFWFMWKAK-GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELL 570 (629)
Q Consensus 492 sr~~~al~~w~~l~~~-G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l 570 (629)
+ ...+..+.+..++ ..+.+++..++..++++++.+.|++. ++++.. +..+.+.+++... .
T Consensus 257 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~~~~~~~~~~~~~--~------------ 317 (365)
T 3get_A 257 N--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKIID--SYTNFITYFFDEK--N------------ 317 (365)
T ss_dssp C--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECC--CSSSEEEEECSSS--C------------
T ss_pred C--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECC--CCCeEEEEECCCC--C------------
Confidence 0 1223333333332 23668888889999999999999998 888653 4444455544211 0
Q ss_pred hhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 571 HKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 571 ~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.+.|.++|..+...... + .+++|++++ +++|++++++.|+++.
T Consensus 318 ---~~~~~~~l~~~gi~v~~g~~~-~-~~~iRis~~----~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 318 ---STDLSEKLLKKGIIIRNLKSY-G-LNAIRITIG----TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ---HHHHHHHHHTTTEECEECGGG-T-CSEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCEEEEECccC-C-CCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence 135677888888654332222 2 468999985 8999999999998864
No 101
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.65 E-value=2.2e-14 Score=155.28 Aligned_cols=316 Identities=13% Similarity=0.128 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHhC----CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH-
Q psy1785 255 FSLMEEHVLAQMRTIVG----FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA- 329 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G----~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa- 329 (629)
...+.+.+.+++.+.+| .+....++++|+|+++..++.+... |...|++...+|.++...+
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~ 150 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--------------PGDAFLVPSPYYPAFNRDLR 150 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTTHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC--------------CCCeEEEccCCCcchHHHHH
Confidence 45666777777777766 4456789999999998877765432 3345667777888877644
Q ss_pred HHcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE-
Q psy1785 330 AFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV- 403 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV- 403 (629)
...|+ +++.+|.+. ++.+|+++|++++.+..+++..+.+|+.+..++.+|.+.| +++|.++|+++|+++++
T Consensus 151 ~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 227 (428)
T 1iay_A 151 WRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD 227 (428)
T ss_dssp TTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HhcCC---EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEe
Confidence 36677 899999874 3478999999999876555555667777778888999999 99999999999999999
Q ss_pred -ecCccccccccccccccccccccc---cCCcce--EEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYV---IEVVAD--SVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDK 476 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~---i~~gaD--sv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~ 476 (629)
+++...+-..++ .+ +..... . ...+.| .++.++||+++.| +.+|++++.++.+........ .+
T Consensus 228 ea~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~-~~------ 297 (428)
T 1iay_A 228 EIYAATVFDTPQF-VS-IAEILD-EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS-SF------ 297 (428)
T ss_dssp CTTGGGCCSSSCC-CC-HHHHHT-SGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH-TT------
T ss_pred ccccccccCCCCc-cC-HHHhcc-ccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH-hc------
Confidence 776633211100 00 000000 0 001256 7889999999754 346888886544443321100 00
Q ss_pred CCCcccCCCCccCCCCCCcchHHHHHHHHhcCh-----hhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-CceEEEE
Q psy1785 477 FYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT-----DGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-ECTNISF 550 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~-----~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-~~~~v~F 550 (629)
. ....+...++..++.. +.+++..++..++++++.+.|++. |++++. + ..+.+.+
T Consensus 298 --------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~ 358 (428)
T 1iay_A 298 --------------G--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLK--NNAGLFCWM 358 (428)
T ss_dssp --------------S--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCC--CSSSSEEEE
T ss_pred --------------c--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccC--CCeeEEEEE
Confidence 0 0122333333444432 245677788888999999999988 887543 4 3333445
Q ss_pred EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 551 ~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
++... ... . .. ....++.++|.++ |.++........ ..+++|+++. .+++++++.+++.|+++.++
T Consensus 359 ~~~~~-~~~-~---~~-----~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 359 DLRPL-LRE-S---TF-----DSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ECGGG-CSS-S---SH-----HHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHHT
T ss_pred echhh-cCC-C---ch-----hHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence 54321 000 0 00 0113577888876 865433222221 1358999995 47999999999999987653
No 102
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.65 E-value=2.2e-14 Score=154.24 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=190.7
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+++++++|.+. .+++.+||++|..++.+.. .|...|++....|.+...++...|. ++
T Consensus 107 ~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l~~~~--------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~ 167 (409)
T 3kki_A 107 PMIEKRLAKFTGFDE--CLLSQSGWNANVGLLQTIC--------------QPNTNVYIDFFAHMSLWEGARYANA---QA 167 (409)
T ss_dssp CHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC--------------CTTCEEEEETTSCHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCCe--EEEecchHHHHHHHHHHhc--------------CCCCEEEECCCcCHHHHHHHHHcCC---eE
Confidence 455667888888764 6777888998887776442 2455778899999999999999988 77
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.++. +|+++|+++|.+. .+.+|+.....+.+|.+.|+++|+++|++||+++++ +++...+-.. ..
T Consensus 168 ~~~~~-----~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~--g~ 235 (409)
T 3kki_A 168 HPFMH-----NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPN--GA 235 (409)
T ss_dssp EEECT-----TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG--GC
T ss_pred EEecC-----CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC--CC
Confidence 77764 7899999999763 235677778888899999999999999999999999 6655332100 00
Q ss_pred cccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcch
Q psy1785 418 SVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV 497 (629)
Q Consensus 418 ~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~a 497 (629)
+ +.. ..++...+|.++.+++|+++.+ .|+++.++ ............+.+.. ......+
T Consensus 236 ~-~~~--~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~~~ 293 (409)
T 3kki_A 236 G-LLA--ELGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVNRCVPFISYPAIFSS----------------TLLPYEA 293 (409)
T ss_dssp C-HHH--HHTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGGGTHHHHCHHHHHSB----------------CCCHHHH
T ss_pred c-chh--hcCCCCCCCEEEeecchhhCCC--ceEEEECH-HHHHHHHHhCcCccccC----------------CCcHHHH
Confidence 0 000 0123223899999999999876 36665544 34332211111111110 0011122
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHH
Q psy1785 498 LKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKI 577 (629)
Q Consensus 498 l~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i 577 (629)
..+..+++.... .+++.++..++++++.+.|++. ++++. +....+.+++.+. . ...++
T Consensus 294 aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~---------~-------~~~~~ 351 (409)
T 3kki_A 294 AGLETTLEIIES--ADNRRQHLDRMARKLRIGLSQL-GLTIR---SESQIIGLETGDE---------R-------NTEKV 351 (409)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHTT-TCCCC---CSSSEEEEEEESH---------H-------HHHHH
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCccC---CCCCEEEEEeCCH---------H-------HHHHH
Confidence 333344444322 2567778888999999999987 77653 3445566665321 0 11356
Q ss_pred HHHHHhcCcEEEeeee--cCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 578 KERMMKSGSMMITYQP--IHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 578 ~~~l~~~G~~~i~~~~--~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.++|.++|.+...... .....+++|+++. ..+|++||+++++.|+++.+
T Consensus 352 ~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~ 402 (409)
T 3kki_A 352 RDYLESNGVFGSVFCRPATSKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVN 402 (409)
T ss_dssp HHHHHHTTEECEEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCceEeeeCCCCcCCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHh
Confidence 7888888865322111 1112368999996 88999999999999998764
No 103
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.65 E-value=1.5e-14 Score=156.45 Aligned_cols=314 Identities=10% Similarity=0.029 Sum_probs=196.5
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC---CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF---QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~---~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+++.+.+++.+.+|+ +..+.++++|+++++..++.+... |...|++...+|.++
T Consensus 81 y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~ 146 (425)
T 1vp4_A 81 YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD--------------DESYCVLDDPAYLGA 146 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHH
Confidence 333345566777777777776684 446789999999998777665321 334566777888899
Q ss_pred HHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC--CCCcEEE-EEeeCCCccccccC---HHHHHHHHHHcCC
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAE--GAVPFMV-SATSGTTVLGAFDP---IPAIADICAEYDM 399 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~--g~~~~~V-vat~Gtt~~G~idp---l~ei~~i~~~~~~ 399 (629)
..++...|. +++.+|.+++| +|+++|+++|.+..++ +..+.+| +.....+.+|.+-| +++|.++|+++|+
T Consensus 147 ~~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~ 222 (425)
T 1vp4_A 147 INAFRQYLA---NFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL 222 (425)
T ss_dssp HHHHHTTTC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---EEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 999999898 99999998776 9999999999764322 1234455 45677788888865 6788899999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF 477 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~ 477 (629)
++++ +++....-..+. . ....++.. +.+.++.+++|+++..+.+|++++++ ++..........+
T Consensus 223 ~li~De~~~~~~~~g~~~-~----~~~~~~~~-~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~~~l~~~~~~~------- 288 (425)
T 1vp4_A 223 FIVEDDPYGALRYEGETV-D----PIFKIGGP-ERVVLLNTFSKVLAPGLRIGMVAGSK-EFIRKIVQAKQSA------- 288 (425)
T ss_dssp EEEEECSSTTCBCSSCCC-C----CHHHHHCT-TTEEEEEESTTTTCGGGCEEEEECCH-HHHHHHHHHHHHH-------
T ss_pred EEEEECCCccccCCCCCC-c----CHHHhCCC-CCEEEEeccccccccccceEEEeeCH-HHHHHHHHHhhhh-------
Confidence 9999 666543211100 0 01111111 26788899999998223478888864 4443321100000
Q ss_pred CCcccCCCCccCCCCCCcchHHHHHHHHhcC----hhhHHHHHHHHHHHHHHHHHHHhcC-C---CcEEEccCCCceEEE
Q psy1785 478 YDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG----TDGLEAHIDKSFDNAKYFTDKIRHR-P---GFKLVLDEPECTNIS 549 (629)
Q Consensus 478 ~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G----~~G~~~~~~~~~~la~~l~~~L~~~-~---g~~l~~~~p~~~~v~ 549 (629)
+. ++ ..+..+.+..++. .+.+++..++..++++++.+.|++. | +++++. +.....+.
T Consensus 289 ----------~~-~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~-~~~g~~~~ 353 (425)
T 1vp4_A 289 ----------DL-CS---PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK-SEGGLFIW 353 (425)
T ss_dssp ----------HS-SC---CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC-CSBSSEEE
T ss_pred ----------cC-CC---CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEec-CCccEEEE
Confidence 00 11 2233333333332 2445666777778899999999874 5 688754 22233444
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
+++. .+... .++.++|.++|..+....... ...+++|++++ . .++++|+.+++.|+++.
T Consensus 354 ~~~~-~~~~~---------------~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~-~-~~~e~i~~~l~~l~~~l 415 (425)
T 1vp4_A 354 LTLP-EGFDT---------------WEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-L-PPDEKIVEGIKRLREVV 415 (425)
T ss_dssp EECC-TTCCT---------------TTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-S-SCHHHHHHHHHHHHHHH
T ss_pred EEcC-CCCCH---------------HHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeC-C-CCHHHHHHHHHHHHHHH
Confidence 5542 22111 135667777886543322221 12368999996 3 39999999999998765
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 416 ~ 416 (425)
T 1vp4_A 416 L 416 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.64 E-value=1.8e-14 Score=155.80 Aligned_cols=320 Identities=8% Similarity=-0.010 Sum_probs=202.5
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|...+....+.+.+.+++.+.+|.+ .. ..++++|+|+++..++.+... |...|++...+|.++
T Consensus 73 y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~Vl~~~p~y~~~ 138 (429)
T 1yiz_A 73 YTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD--------------EGDEVIIIEPFFDCY 138 (429)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcC--------------CCCEEEEcCCCchhH
Confidence 3333445677788888888888854 45 799999999998888776521 333566677788888
Q ss_pred HHHHHHcCCCCCCEEEEecCC----------CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHH
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDA----------RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIAD 392 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~----------~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~ 392 (629)
..++...|. +++.+|.++ ++.+|+++|+++|.. .+.+|+.+...+.+|.+-| +++|++
T Consensus 139 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~ 209 (429)
T 1yiz_A 139 EPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVAN 209 (429)
T ss_dssp HHHHHHTTC---EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHHHcCC---EEEEEeCCcccccccccccCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHH
Confidence 888898998 999999876 357999999988842 3556777778888999875 999999
Q ss_pred HHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCC
Q psy1785 393 ICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
+|+++|+++++ ++++..+-..+. .+ +.... + ..+.|.++.++||+++.| +.+|++++++ ++........ .
T Consensus 210 ~~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~--~-~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~ 282 (429)
T 1yiz_A 210 LCKKWNVLCVSDEVYEHMVFEPFEH-IR-ICTLP--G-MWERTITIGSAGKTFSLTGWKIGWAYGPE-ALLKNLQMVH-Q 282 (429)
T ss_dssp HHHHHTCEEEEECTTTTCBCTTSCC-CC-GGGST--T-TGGGEEEEEEHHHHHTCGGGCCEEEESCH-HHHHHHHHHH-H
T ss_pred HHHHcCcEEEEeccccccccCCCCC-cC-hhhcc--C-CcCceEEEecchhccCCCCcceEEEEeCH-HHHHHHHHHH-h
Confidence 99999999999 666543211100 00 00110 0 124899999999998743 2388888865 3443221100 0
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHh----cC--hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA----KG--TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP 543 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~----~G--~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p 543 (629)
+. .+ +........+..+++. ++ .+.+++..++..++++++.+.|++. |+++.. +.
T Consensus 283 ~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 343 (429)
T 1yiz_A 283 NC--------------VY---TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTV-PQ 343 (429)
T ss_dssp TT--------------TC---CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEE-CS
T ss_pred hc--------------cc---CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-CC
Confidence 00 00 1111122233334443 13 5567888888889999999999987 888765 32
Q ss_pred CceEEEEEeeCCCC----CCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCC------ccceEEEeecCCCCCH
Q psy1785 544 ECTNISFWYIPPSL----RGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHA------LPNFFRLVLQNSALDH 612 (629)
Q Consensus 544 ~~~~v~F~~~p~~~----~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~------~~~~lR~~~~n~~~t~ 612 (629)
....+.+++..... ..... ... ..++.++|. ++|..+........ ..+++|+++. +++
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~---~~~ 412 (429)
T 1yiz_A 344 GGYFMVADWSSLDSKVDLTQETD--ARK------DYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF---KKD 412 (429)
T ss_dssp BSSEEEEECCSSCTTTTCCSSSS--SCH------HHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC---SCH
T ss_pred cceEEEEEccccccccccccccc--CCC------HHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec---CCH
Confidence 23345555532100 00000 000 135666675 67854432222210 1368999995 389
Q ss_pred HHHHHHHHHHHHHhhc
Q psy1785 613 SDMDYFIDEIERLGHD 628 (629)
Q Consensus 613 edid~l~~~i~~l~~~ 628 (629)
++|+.+++.|+++.+.
T Consensus 413 e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 413 ENLQKAAEILRKWKGS 428 (429)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987654
No 105
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.64 E-value=2.4e-15 Score=158.31 Aligned_cols=305 Identities=13% Similarity=0.083 Sum_probs=194.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCC-CCeEEeCCc-hhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQG-GDGIFCPGG-SMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~-~~g~~~~Gg-T~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa 329 (629)
++....+..++.+++++++|.+. .+.++++|+ |+++..++.....+ | .+..+|+++..+|++... +
T Consensus 43 ~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~--------~---~~g~~vi~~~~~~~~~~~-~ 110 (360)
T 1w23_A 43 SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTK--------G---TIGNYVLTGSWSEKALKE-A 110 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCT--------T---CEEEEEECSHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCC--------C---CcccEEEecchhHHHHHH-H
Confidence 56666677889999999999973 478899998 88877665543221 1 134467777777877433 3
Q ss_pred HHcCCCCCCEEEEecCC-CCCCCHHHHHH-HHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 330 AFEGLGSDNVYLIKTDA-RGRMLPESLRG-EIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~-~g~~d~~~Le~-~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
.. .| +++.||+++ +|.+|+++|++ +|.. .+.+|+.+..++.+|.+-| +| ++++|+++++ ++
T Consensus 111 ~~--~g--~~~~v~~~~~~~~~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~ 175 (360)
T 1w23_A 111 KL--LG--ETHIAASTKANSYQSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSS 175 (360)
T ss_dssp HT--TS--EEEEEEECGGGTSCSCCCGGGCCCCT------TEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTT
T ss_pred HH--hC--CeEEeecccccCcCCccchHhhccCC------CCCEEEEeCCCCCcceecc--cc---cccCCceEEEechh
Confidence 33 34 788999986 77899999988 6632 4667888888899999854 23 3389999999 65
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
+.+..... +.. .|+++.++||+++ |.|+|+++++++ .+.......+.++.... ....+
T Consensus 176 ~~~~~~~~--------------~~~-~di~~~s~sK~~~-~~G~G~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~ 233 (360)
T 1w23_A 176 DILSRPLK--------------VNQ-FGMIYAGAQKNLG-PSGVTVVIVKKD-LLNTKVEQVPTMLQYAT-----HIKSD 233 (360)
T ss_dssp TTTSSCCC--------------GGG-CSEEEEETTTTTS-CTTCEEEEEEHH-HHCSCCTTCCGGGCHHH-----HHHTT
T ss_pred hcCCCCcC--------------ccc-CCEEEEEcccccC-CCCcEEEEEcHH-HHhhcccCCcchhhhhh-----hhhcc
Confidence 54322111 222 4899999999997 668999998764 33322111111110000 00000
Q ss_pred CccCCCCCC-cchHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHhcCCCc-EEEccCC--Cce-EEEEEeeCCCCCC
Q psy1785 486 DKHIQCGRK-PDVLKFWFMWKAKGTD-GLEAHIDKSFDNAKYFTDKIRHRPGF-KLVLDEP--ECT-NISFWYIPPSLRG 559 (629)
Q Consensus 486 ~~~~~~sr~-~~al~~w~~l~~~G~~-G~~~~~~~~~~la~~l~~~L~~~~g~-~l~~~~p--~~~-~v~F~~~p~~~~~ 559 (629)
.. .++.. .....+..+++.+... +++++.++..++++++.+.|++++++ .... +| ..+ .++|++.. .
T Consensus 234 -~~-~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~--- 306 (360)
T 1w23_A 234 -SL-YNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHA-EKGSRSLMNVTFNLRN-E--- 306 (360)
T ss_dssp -TC-SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESS-CGGGBCSSEEEEECSS-H---
T ss_pred -CC-CCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccC-CchhccCcEEEEEcCC-C---
Confidence 00 01111 1334455566655455 78899999999999999999998765 6542 23 234 56666421 0
Q ss_pred CCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 560 KEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. ...++.+.|.++|..+.... ...+++|+++. ..++++|++++++.|+++.++
T Consensus 307 --------~----~~~~~~~~l~~~gi~~~~~~---~~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 307 --------E----LNQQFLAKAKEQGFVGLNGH---RSVGGCRASIY-NAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp --------H----HHHHHHHHHHHTTEESCBCC---TTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred --------c----cHHHHHHHHHHCCeeeecCC---CCCCeEEEEec-CCCCHHHHHHHHHHHHHHHhh
Confidence 0 01346667888886432111 11358999996 888999999999999987653
No 106
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.63 E-value=5.7e-14 Score=150.72 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH----HHc
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA----AFE 332 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa----~~l 332 (629)
....++.+++++++|.+ ..+++++||+++..++.+... |...|+++..+|.++.... ...
T Consensus 64 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~ 127 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLCQ--------------QGDHIVSASAIYGCTHAFLSHSMPKF 127 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSSCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEcCCCcccHHHHHHHHHHHc
Confidence 34466777899999986 678888899988877766521 3446778888999887766 777
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
|. +++.+|.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ +++....
T Consensus 128 g~---~~~~v~~~-----d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 193 (398)
T 2rfv_A 128 GI---NVRFVDAA-----KPEEIRAAMRP------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC 193 (398)
T ss_dssp TC---EEEEECTT-----SHHHHHHHCCT------TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred CC---EEEEeCCC-----CHHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 87 88888874 88888888753 366788888999999999999999999999999999 6664433
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
..+ +..++|+++.++||+++.|.. +|+++.+++ .+...+. .+... .
T Consensus 194 ~~~--------------~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~---~~~~~----------~---- 241 (398)
T 2rfv_A 194 QQP--------------LQLGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARF---VGLKD----------I---- 241 (398)
T ss_dssp CCG--------------GGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHH---THHHH----------T----
T ss_pred CCc--------------hhhCCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHH---HHHHh----------C----
Confidence 211 122589999999999988876 588887763 3331111 01100 0
Q ss_pred CCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc-c------------C---CCceEEEEEe
Q psy1785 489 IQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL-D------------E---PECTNISFWY 552 (629)
Q Consensus 489 ~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~-~------------~---p~~~~v~F~~ 552 (629)
. +-....+..|.+++.+ +.+..+.++..++++++.+.|++.+.++-+. + + ...++++|.+
T Consensus 242 -~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~ 317 (398)
T 2rfv_A 242 -T-GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEI 317 (398)
T ss_dssp -T-CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred -C-CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 0 0012345566666554 3355666777778888888888765433221 0 0 1356677765
Q ss_pred eCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee-----------------e-----cCC-ccceEEEeecCCC
Q psy1785 553 IPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ-----------------P-----IHA-LPNFFRLVLQNSA 609 (629)
Q Consensus 553 ~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~-----------------~-----~~~-~~~~lR~~~~n~~ 609 (629)
... .. ...++.+.+...|. .++.. + ..+ ..+++|+++. ..
T Consensus 318 ~~~-----------~~----~~~~l~~~~~~~~i-~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~ 380 (398)
T 2rfv_A 318 AGG-----------LE----AGRRMINSVELCLL-AVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LE 380 (398)
T ss_dssp TTH-----------HH----HHHHHHTTCSSSEE-CSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SS
T ss_pred cCC-----------HH----HHHHHHHhCCccee-ccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CC
Confidence 310 00 01123333332321 11110 0 001 1368999997 89
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1785 610 LDHSDMDYFIDEIERL 625 (629)
Q Consensus 610 ~t~edid~l~~~i~~l 625 (629)
+++++|+.++++|+++
T Consensus 381 ~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 381 DPEDIINDLEHAIRKA 396 (398)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999999875
No 107
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.63 E-value=2.1e-14 Score=153.18 Aligned_cols=304 Identities=11% Similarity=0.081 Sum_probs=194.0
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
|...+....+.+.+.+++.+..|++ ..+.++|+|+|+++..++.+... |...|++...+|.++.
T Consensus 64 y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--------------~gd~vl~~~p~~~~~~ 129 (391)
T 3h14_A 64 YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFD--------------SGDRVGIGAPGYPSYR 129 (391)
T ss_dssp -----CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcC--------------CCCEEEEcCCCCccHH
Confidence 3333345667777788888877854 46899999999998877665421 3345677778899999
Q ss_pred HHHHHcCCCCCCEEEEecCCCC--CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeE
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARG--RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMAD 401 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g--~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~l 401 (629)
.++...|. +++.+|.++++ .+|+++|+++ .+.+|+.+...+.+|.+-| +++|+++|+++|+++
T Consensus 130 ~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~l 197 (391)
T 3h14_A 130 QILRALGL---VPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASF 197 (391)
T ss_dssp HHHHHTTC---EEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHcCC---EEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 99999998 99999998654 6899988776 2446677788899999887 888999999999999
Q ss_pred EE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCC
Q psy1785 402 SV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFY 478 (629)
Q Consensus 402 hV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~ 478 (629)
++ +++....-..+. ... .... .+.++.+++|+++ ....+|.++.+++ +..........+
T Consensus 198 i~De~~~~~~~~~~~~------~~~--~~~~-~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~-------- 259 (391)
T 3h14_A 198 ISDEIYHGIEYEAKAV------TAL--ELTD-ECYVINSFSKYFSMTGWRVGWMVVPED-QVRVVERIAQNM-------- 259 (391)
T ss_dssp EEECTTTTCBSSSCCC------CGG--GTCS-SSEEEEESSSTTCCTTSCCEEEECCGG-GHHHHHHHHHHT--------
T ss_pred EEECcchhcccCCCCc------Chh--hcCC-CEEEEEechhccCCccceeEEEEeCHH-HHHHHHHHHhhh--------
Confidence 99 666543211100 000 1222 5678889999997 4566788877553 333211100000
Q ss_pred CcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEE-EEeeCCCC
Q psy1785 479 DTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNIS-FWYIPPSL 557 (629)
Q Consensus 479 ~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~-F~~~p~~~ 557 (629)
+ .+........+..++. +.+.+++..++..++.+++.+.|++. ++..+. .|..+.+. +.+.....
T Consensus 260 ---------~-~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 325 (391)
T 3h14_A 260 ---------F-ICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKA-GFTRIA-PPDGAFYVYADVSDLTD 325 (391)
T ss_dssp ---------T-CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBC-CCCBTTEEEEECTTTCS
T ss_pred ---------c-cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHc-CCCccc-CCCeeEEEEEecCccCC
Confidence 0 0111112222223333 56778888899999999999999987 554433 34443332 23321111
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC--CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~--~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. ..++.++|.++ |..+....... ...+++|++++ . ++++|+.+++.|+++.++
T Consensus 326 ~---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~-~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 326 D---------------SRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYA-R--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp C---------------HHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECC-S--CHHHHHHHHHHHHHHHHH
T ss_pred C---------------HHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEec-C--CHHHHHHHHHHHHHHHHH
Confidence 1 12466676665 86543322221 12468999986 3 789999999999887653
No 108
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.63 E-value=1.8e-15 Score=160.50 Aligned_cols=294 Identities=13% Similarity=0.159 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ .+++++|||+++..++.+++. .|...|+++..+|.+...++...|. ++
T Consensus 38 ~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~-------------~~gd~Vi~~~~~~~~~~~~~~~~G~---~~ 99 (367)
T 3nyt_A 38 TELEDRLADFVGAK--YCISCANGTDALQIVQMALGV-------------GPGDEVITPGFTYVATAETVALLGA---KP 99 (367)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCC-------------CCcCEEEECCCccHHHHHHHHHcCC---EE
Confidence 34445678888876 689999999999888876521 2445688889999999999999999 99
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.++++++ +.+|+++|+++|.+ .+.+|+ .++.+|...|+++|.++|+++|+++++ +++.+.....
T Consensus 100 ~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~--- 167 (367)
T 3nyt_A 100 VYVDIDPRTYNLDPQLLEAAITP------RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKG--- 167 (367)
T ss_dssp EEECBCTTTCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETT---
T ss_pred EEEecCCccCCcCHHHHHHhcCc------CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECC---
Confidence 99999876 89999999998843 344444 567889999999999999999999999 5543322211
Q ss_pred ccccccccccccCCcceEEEeC--CCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWN--PHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~--~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
+..+ .. .|.++++ +||+++.+...|+++.+++.+......... + .... .+... .+..+.+
T Consensus 168 -------~~~~-~~-~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~-~--g~~~----~~~~~--~~g~~~~ 229 (367)
T 3nyt_A 168 -------KRSC-NL-STVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIAR-H--GQDR----RYHHI--RVGVNSR 229 (367)
T ss_dssp -------EETT-SS-SSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTB-T--TEEE----TTEEC--SCCCBCC
T ss_pred -------eecc-CC-CCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHh-c--CCCc----Cceee--ccCcCCC
Confidence 1111 11 2666666 699998744467777766554433211110 0 0000 00000 1112223
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC-----ceEEEEEeeCCCCCCCCchhhHHHH
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE-----CTNISFWYIPPSLRGKEDQADFNEL 569 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~-----~~~v~F~~~p~~~~~~~~~~~~~~~ 569 (629)
...+..++.+..+ +.+++..++..++++++.+.|++. ++++.. .+. ...+.+... .
T Consensus 230 ~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~--~------------- 290 (367)
T 3nyt_A 230 LDTLQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQV-GIGTPF-IEVNNISVYAQYTVRMD--N------------- 290 (367)
T ss_dssp CCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CCTTEECCCSSEEEECS--S-------------
T ss_pred ccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccC-CeeccC-CCCCCceeeEEEEEEeC--C-------------
Confidence 4455555555443 456788888999999999999998 565433 221 112223221 0
Q ss_pred HhhHHHHHHHHHHhcCcEEEe-ee-ecC----------C-------ccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 570 LHKVAPKIKERMMKSGSMMIT-YQ-PIH----------A-------LPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~-~~-~~~----------~-------~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
...+.+.|.++|...-. +. +.. . ....||+.+ ++.+|++||+++++.|++.
T Consensus 291 ----~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 291 ----RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPM-HPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ----HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccC-CCCCCHHHHHHHHHHHHHH
Confidence 13567778888863211 11 110 0 024789998 4999999999999998753
No 109
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.63 E-value=5.3e-14 Score=150.09 Aligned_cols=307 Identities=11% Similarity=0.013 Sum_probs=194.6
Q ss_pred HHH-HHHHHHHHHHHHhC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHH
Q psy1785 255 FSL-MEEHVLAQMRTIVG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAF 331 (629)
Q Consensus 255 ~~~-~E~~~~~~l~~l~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~ 331 (629)
... +.+.+.+++.+..| .+..+.++++|+++++..++.+.. .|...|++...+|.++..++..
T Consensus 65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------------~~gd~vl~~~p~y~~~~~~~~~ 130 (390)
T 1d2f_A 65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------------ETGEGVVIHTPAYDAFYKAIEG 130 (390)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------------CTTCEEEEEESCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc--------------CCCCEEEEcCCCcHHHHHHHHH
Confidence 445 66777777777778 444678999999999877766432 1334566777888899999999
Q ss_pred cCCCCCCEEEEecCCCC---CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--
Q psy1785 332 EGLGSDNVYLIKTDARG---RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV-- 403 (629)
Q Consensus 332 lGlg~~~v~~V~~d~~g---~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV-- 403 (629)
.|. +++.+|.++++ .+|+++|+++|.+ ..+.+|+.+...+.+|.+-| +++|+++|+++|+++++
T Consensus 131 ~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 202 (390)
T 1d2f_A 131 NQR---TVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDE 202 (390)
T ss_dssp TTC---EEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCC---EEEEeecccCCCccccCHHHHHHHhcc-----CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 998 99999987543 5999999998853 13556666778888998876 89999999999999999
Q ss_pred ecCccccccccccccccccccccccCCc-ceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVV-ADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~g-aDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
+++....-..+. . ... .+..+ .|. +.++||+++.| +.+|+++++++.+......... + .
T Consensus 203 ~~~~~~~~g~~~--~---~~~--~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-~---~------- 263 (390)
T 1d2f_A 203 IHMDMVWGEQPH--I---PWS--NVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALK-G---R------- 263 (390)
T ss_dssp TTTTCBCSSSCC--C---CGG--GTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHH-T---T-------
T ss_pred cccccccCCCCC--c---CHH--HcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHh-h---h-------
Confidence 666543211100 0 011 12111 377 99999999743 3478888875444432211000 0 0
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCCC
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLRG 559 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~~ 559 (629)
.+..+........+..+++. +.+.+++..++..++++++.+.|++ +|+++++. |..+.+. +.+...+..
T Consensus 264 -----~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 334 (390)
T 1d2f_A 264 -----DGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI--PQSTYLAWLDLRPLNID- 334 (390)
T ss_dssp -----SCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC--CSBCSEEEEECGGGCCC-
T ss_pred -----cccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec--CCccEEEEEEccccCCC-
Confidence 00001111112222233332 3556778888888999999999998 78887643 5544443 343211000
Q ss_pred CCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 560 KEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+.|. +.|..+....... ...+++|++++. ++++++..++.|+++.++
T Consensus 335 --------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 335 --------------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC---PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp --------------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 135677787 5786543322221 123589999963 478999999998877543
No 110
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.63 E-value=3.4e-14 Score=152.48 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH----HHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA----AFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa----~~lGlg 335 (629)
.++.+.+++++|.+ ..+++++||+++..++..... +...|+++...|.+....+ ...|+
T Consensus 69 ~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~~--------------~gd~Vi~~~~~y~~~~~~~~~~~~~~g~- 131 (392)
T 3qhx_A 69 TALEAALAAVEDAA--FGRAFSSGMAAADCALRAMLR--------------PGDHVVIPDDAYGGTFRLIDKVFTGWNV- 131 (392)
T ss_dssp HHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHTGGGGTC-
T ss_pred HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEeCCCcchHHHHHHHHHHhcCc-
Confidence 45566788888876 589999999999888775521 3446778888888776655 45677
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+++.++.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ +++.... ..
T Consensus 132 --~~~~v~~~-----d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~ 197 (392)
T 3qhx_A 132 --EYTPVALA-----DLDAVRAAIRP------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQ 197 (392)
T ss_dssp --EEEEECTT-----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CC
T ss_pred --EEEEeCCC-----CHHHHHHhhCC------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CC
Confidence 88888875 89999888864 466788888999999999999999999999999999 6654322 22
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
| +..|+|.++.++||+++.+.. +|+++.+++.+...... ... ..
T Consensus 198 ~-------------~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~-----~~~----------------~~ 243 (392)
T 3qhx_A 198 P-------------LSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF-----LQN----------------GA 243 (392)
T ss_dssp G-------------GGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH-----HHH----------------HH
T ss_pred h-------------HHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH-----HHH----------------hc
Confidence 1 233699999999999997643 78887776544433211 000 01
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
+.....+..|+.++.+ +.+..++++..++++++.+.|++.|+++-+.
T Consensus 244 g~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~ 290 (392)
T 3qhx_A 244 GAVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVL 290 (392)
T ss_dssp CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred CCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEE
Confidence 2233556777776654 4477788889999999999999998886553
No 111
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.63 E-value=1.8e-14 Score=156.19 Aligned_cols=304 Identities=13% Similarity=0.054 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhC-----CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC
Q psy1785 260 EHVLAQMRTIVG-----FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL 334 (629)
Q Consensus 260 ~~~~~~l~~l~G-----~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl 334 (629)
.+..+.++++++ .+..+.++|+|||+++..++...+. |...|+++.-+|......+...|+
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~g~ 164 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLAN--------------PGQNILVPRPGFSLYKTLAESMGI 164 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHcCC
Confidence 344455666666 4556889999999998877776432 334567777888888899999999
Q ss_pred CCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCc
Q psy1785 335 GSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 335 g~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg 407 (629)
+++.+|.++ ++.+|+++|++.|.+ .+..|+.+...+.+|.+-| +++|+++|+++|+++++ +|++
T Consensus 165 ---~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~ 235 (427)
T 3dyd_A 165 ---EVKLYNLLPEKSWEIDLKQLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGD 235 (427)
T ss_dssp ---EEEEEEEEGGGTTEECHHHHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTT
T ss_pred ---EEEEEecccccCCCCCHHHHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchh
Confidence 999999864 567999999988854 3556777888999999999 99999999999999999 7766
Q ss_pred cccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEecc------chhhhhhcCCCCccccCCcCCCc
Q psy1785 408 HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQ------SVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~------~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
...-..+ .. ....++... -..++.+++|.++.| ..+|.++++++ .+.... .. +. ..
T Consensus 236 ~~~~g~~--~~---~~~~~~~~~-~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l-~~---~~-~~------ 298 (427)
T 3dyd_A 236 MVFSDCK--YE---PLATLSTDV-PILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGL-VK---LS-QR------ 298 (427)
T ss_dssp CBCSSCC--CC---CGGGGCSSC-CEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHH-HH---HH-HH------
T ss_pred hccCCCc--Cc---cHHHhCCCC-cEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHH-HH---HH-hc------
Confidence 4321110 00 111111111 225567999986544 44788888763 122111 00 00 00
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEE-EEEeeCCCCCC
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNI-SFWYIPPSLRG 559 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v-~F~~~p~~~~~ 559 (629)
+ .+........+..+++....+.++++.++..++++++.+.|+++||++++. |..+.+ .+++.......
T Consensus 299 -------~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--p~~g~~~~~~l~~~~~~~ 368 (427)
T 3dyd_A 299 -------I-LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR--PSGAMYLMVGIEMEHFPE 368 (427)
T ss_dssp -------H-CCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC--CSBTTEEEEEECGGGCTT
T ss_pred -------c-CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC--CCeeEEEEEecCHhhcCC
Confidence 0 011112333444455544577888999999999999999999999998765 443333 33442111100
Q ss_pred CCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 560 KEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..+ ..++.++|. +.|.++....... ..+++|++++ +++++|+.+++.|+++.++
T Consensus 369 ~~~-----------~~~~~~~l~~~~gV~v~~g~~~~-~~~~iRis~~---~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 369 FEN-----------DVEFTERLVAEQSVHCLPATCFE-YPNFIRVVIT---VPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp CSS-----------HHHHHHHHHHHHCEECEEGGGGT-CTTEEEEESC---SCHHHHHHHHHHHHHHHHH
T ss_pred CCC-----------HHHHHHHHHHHCCEEEECCcccC-CCCeEEEEEC---CCHHHHHHHHHHHHHHHHH
Confidence 000 124566664 6786554433332 2468999984 6899999999999887653
No 112
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.63 E-value=7.3e-14 Score=149.13 Aligned_cols=282 Identities=14% Similarity=0.132 Sum_probs=186.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lGlg 335 (629)
.++.+.+++++|.+ +.+++.+||+++..++..... |...|+++..+|.++... +...|+
T Consensus 55 ~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~~~g~- 117 (386)
T 1cs1_A 55 DVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFLK--------------PGDLLVAPHDCYGGSYRLFDSLAKRGCY- 117 (386)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHHHTTTSC-
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEecCCcHhHHHHHHHHHHhcCC-
Confidence 45556788888876 456666679988877765521 334567777888875554 345566
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+++.++.+ |+++|+++|.+ .+.+|+.+...+.+|.+.|+++|+++|+++|+++++ ++.......+
T Consensus 118 --~~~~~~~~-----d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~ 184 (386)
T 1cs1_A 118 --RVLFVDQG-----DEQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP 184 (386)
T ss_dssp --EEEEECTT-----CHHHHHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG
T ss_pred --EEEEeCCC-----CHHHHHHhhcc------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 78888764 89999998863 345677888999999999999999999999999999 6765543211
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCcc--EEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQC--SVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~--g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
++.++|.++.++||+++.|.+. |+++++++++...... +... .
T Consensus 185 --------------~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~----~~~~-----------------~ 229 (386)
T 1cs1_A 185 --------------LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW----WANN-----------------I 229 (386)
T ss_dssp --------------GGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH----HHHH-----------------H
T ss_pred --------------cccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH----HHHh-----------------c
Confidence 1225899999999999988874 8888876444332211 0000 0
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc-cC---------------CCceEEEEEeeCC
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL-DE---------------PECTNISFWYIPP 555 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~-~~---------------p~~~~v~F~~~p~ 555 (629)
+.....+..|.+++.+ +.+.++.++..++++++.+.|++.+.++-+. +. ...+.++|.+...
T Consensus 230 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (386)
T 1cs1_A 230 GVTGGAFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD 307 (386)
T ss_dssp TCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC
T ss_pred CCCCCHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC
Confidence 0011234444444432 3466677778888999999998887765432 10 1256677775311
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEe--ee--------e---c-----------CC-ccceEEEeecCCCC
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMIT--YQ--------P---I-----------HA-LPNFFRLVLQNSAL 610 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~--~~--------~---~-----------~~-~~~~lR~~~~n~~~ 610 (629)
...+.+.|.+.|.+.-. .. + . .| ..+++|+++. ...
T Consensus 308 ------------------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~ 368 (386)
T 1cs1_A 308 ------------------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IED 368 (386)
T ss_dssp ------------------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSC
T ss_pred ------------------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCC
Confidence 02355667777764321 01 0 0 01 1368999997 789
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy1785 611 DHSDMDYFIDEIERLGH 627 (629)
Q Consensus 611 t~edid~l~~~i~~l~~ 627 (629)
++++|+.+.+.|+++.+
T Consensus 369 ~~~~i~~l~~al~~~~~ 385 (386)
T 1cs1_A 369 GEDLIADLENGFRAANK 385 (386)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999988753
No 113
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.63 E-value=2.5e-14 Score=153.06 Aligned_cols=298 Identities=12% Similarity=0.085 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+..+.++++|+++++..++.+... |...|++...+|.++...+...|. ++
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~ 139 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLD--------------EGSPVLLEAPSYMGAIQAFRLQGP---RF 139 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTCC---EE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHHHHHHHcCC---EE
Confidence 3445556777787667899999999998777765421 333566677788899899888888 89
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEE-EEeeCCCccccccCHH---HHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMV-SATSGTTVLGAFDPIP---AIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~V-vat~Gtt~~G~idpl~---ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+.+|.+++| +|+++|++++.+ . .+.+| +.....+.+|.+-|.+ +|+++|+++|+++++ +++....-..
T Consensus 140 ~~~~~~~~~-~d~~~l~~~l~~----~-~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~ 213 (397)
T 2zyj_A 140 LTVPAGEEG-PDLDALEEVLKR----E-RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA 213 (397)
T ss_dssp EEEEEETTE-ECHHHHHHHHHH----C-CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC
T ss_pred EecCcCCCC-CCHHHHHHHHhh----c-CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC
Confidence 999998766 999999999875 1 12233 4566678888887654 899999999999999 6665432111
Q ss_pred cccccccccccccccC--CcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 414 PQQCSVFLTRRNYVIE--VVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~--~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
+. . ....++.+ .+-..++.++||+++ | ..+|++++++ ++..........+ +.
T Consensus 214 ~~-~----~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~-~~~~~l~~~~~~~-----------------~~- 268 (397)
T 2zyj_A 214 RL-P----SLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHP-EALQKLVQAKQGA-----------------DL- 268 (397)
T ss_dssp CC-C----CHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCH-HHHHHHHHHHHHH-----------------HS-
T ss_pred CC-C----chhhhCcccCCCeEEEEeccccccc-ccceeEEEecCH-HHHHHHHHHHHhh-----------------cC-
Confidence 00 0 01111111 013478899999999 5 5689988864 3433221100000 00
Q ss_pred CCCCcchHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHhc-CC-CcEEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 491 CGRKPDVLKFWFMWKAKGT---DGLEAHIDKSFDNAKYFTDKIRH-RP-GFKLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G~---~G~~~~~~~~~~la~~l~~~L~~-~~-g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
++ ..+..+.+...+.. +.+++..++..++++++.+.|++ .| |+++.. +.....+.+++. .+..
T Consensus 269 ~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~~~-~~~~------- 336 (397)
T 2zyj_A 269 HT---PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWMELP-KGLS------- 336 (397)
T ss_dssp SC---CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEECS-TTCC-------
T ss_pred CC---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEEcC-CCCC-------
Confidence 11 12223333333322 44677777788889999999987 57 688754 223334445442 2110
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.++|.++|..+....... ...+++|++++ .. ++++|+.+++.|+++.+
T Consensus 337 --------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 337 --------AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYA-TL-DREGIAEGVRRLGRALK 391 (397)
T ss_dssp --------HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECS-SS-CHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcC-CC-CHHHHHHHHHHHHHHHH
Confidence 1356778888886544322221 12368999996 33 99999999999987654
No 114
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.63 E-value=4.2e-14 Score=153.08 Aligned_cols=317 Identities=11% Similarity=0.064 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCe--EEEEcCCcchHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRL--VLYTSEDAHYSIKKL 328 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~--vv~~s~~~H~Si~ka 328 (629)
.....+++.+.+++.+..|++ ..+.++|+|+|+++..++.+.... .|.. .|++...+|.++..+
T Consensus 82 ~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~------------~~gd~~~Vl~~~p~~~~~~~~ 149 (437)
T 3g0t_A 82 DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRT------------HKNREYGTLFIDPGFNLNKLQ 149 (437)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTS------------CTTCSCCEEEEESCCHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcC------------CCCCccEEEEeCCCcHhHHHH
Confidence 334667777777777777754 368999999999988777665310 1223 466677889999999
Q ss_pred HHHcCCCCCCEEEEecCCCC-CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE-
Q psy1785 329 AAFEGLGSDNVYLIKTDARG-RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV- 403 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g-~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV- 403 (629)
+...|. +++.||+++++ .+|+++|+++|+. ..+.+|+.+...+.+|.+-| +++|+++|+++|+++++
T Consensus 150 ~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 150 CRILGQ---KFESFDLFEYRGEKLREKLESYLQT-----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221 (437)
T ss_dssp HHHHTC---CCEEEEGGGGCTTHHHHHHHHHHTT-----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCC---EEEEEeecCCCCccCHHHHHHHHhc-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE
Confidence 999999 99999997544 7899999998842 13456666777899998876 77789999999999999
Q ss_pred -ecCccccccccccc---ccc-ccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhh-hhhcCCCCc------
Q psy1785 404 -TWNPHKLLTAPQQC---SVF-LTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLT-ECHSASASY------ 470 (629)
Q Consensus 404 -A~gg~~l~~~~~~~---~~~-l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~-~~~~~~~~y------ 470 (629)
+++....- ..... +.+ .... +.. +.+.++.++||+++ ....+|++++++ .+.. ........+
T Consensus 222 e~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~ 296 (437)
T 3g0t_A 222 LAYFGMDFR-KDYSHPGEPLYQPSVA--NYT-DNYILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLEESFGRLRFG 296 (437)
T ss_dssp CTTTTCCTT-SCCCSTTSSCCCCCGG--GTC-SCEEEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGHHHHSCSBHH
T ss_pred cchhhcccC-CCcCcccccchhhccC--CCC-CcEEEEEcCccCCCCccceeEEEEECH-HHhhhhhhcccccccccchh
Confidence 66543221 10000 000 0111 112 37789999999998 345588888765 3333 200000000
Q ss_pred ---cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcCh--hh---HHHHHHHHHHHHHHHHHHHhcCCCcEEE---
Q psy1785 471 ---LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT--DG---LEAHIDKSFDNAKYFTDKIRHRPGFKLV--- 539 (629)
Q Consensus 471 ---l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~--~G---~~~~~~~~~~la~~l~~~L~~~~g~~l~--- 539 (629)
+..... .+ +-....+..+.+...+.. .+ +++..++..++++++.+.|+++ |+++.
T Consensus 297 ~~~~~~~~~----------~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 362 (437)
T 3g0t_A 297 EALSSSALY----------AL---SSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDK 362 (437)
T ss_dssp HHHHTTHHH----------HH---HSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCE
T ss_pred HHHHHHHHh----------hh---cCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccc
Confidence 100000 00 001122333333333322 22 7888899999999999999998 99887
Q ss_pred ---ccC-CCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCc-cceEEEeecCCCCCHHH
Q psy1785 540 ---LDE-PECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHAL-PNFFRLVLQNSALDHSD 614 (629)
Q Consensus 540 ---~~~-p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~-~~~lR~~~~n~~~t~ed 614 (629)
. + .....+.+.+. +.. ..++.++|.++|..+......... .+++|++++ ..+++|
T Consensus 363 ~~~~-~~~~~~~~~~~~~--~~~---------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~e~ 422 (437)
T 3g0t_A 363 DGNE-PLADGFYFTVGYK--GMD---------------SSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTS--LLPESQ 422 (437)
T ss_dssp ETTE-ECCSSSEEEEEET--TCC---------------HHHHHHHHHHTTEECEESTTTTCCCTTCEEEECS--SSCGGG
T ss_pred cCCC-CCceeEEEEEecC--CCC---------------HHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEe--cCCHHH
Confidence 3 2 22333444442 111 135677888888654332222111 257999995 449999
Q ss_pred HHHHHHHHHHHhhc
Q psy1785 615 MDYFIDEIERLGHD 628 (629)
Q Consensus 615 id~l~~~i~~l~~~ 628 (629)
|+.+++.|+++.++
T Consensus 423 i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 423 FPDLEKRLQMLNAE 436 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
No 115
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.63 E-value=1e-13 Score=151.30 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=196.4
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC-CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK 327 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~-~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k 327 (629)
|...+....+.+.+.+++.+..|. +..+.++|+|+++++..++.+... |...|++..-+|.++..
T Consensus 114 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~--------------~Gd~Vlv~~p~y~~~~~ 179 (448)
T 3aow_A 114 YGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLN--------------PGDIVVVEAPTYLAALQ 179 (448)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcC--------------CCCEEEEeCCChHHHHH
Confidence 433445566667767677666698 556889999999998877765421 33456777788889999
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEE-EEeeCCCccccccC---HHHHHHHHHHcCCeEEE
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMV-SATSGTTVLGAFDP---IPAIADICAEYDMADSV 403 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~V-vat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV 403 (629)
++...|. +++.||.+++| +|+++|+++|.....++..+.+| +.....+.+|.+-| +++|.++|++|++++++
T Consensus 180 ~~~~~g~---~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 180 AFNFYEP---QYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp HHHTTCC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHcCC---EEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999898 99999998876 99999999997432233345555 45667788888765 56899999999999999
Q ss_pred --ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 404 --TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 404 --A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
+++...+-..+ .. ....+... +.+....+++|+++..+-+|++++++ .+..........+
T Consensus 256 De~y~~~~~~g~~--~~---~~~~~~~~-~~vi~~~S~SK~~~~GlriG~v~~~~-~l~~~l~~~~~~~----------- 317 (448)
T 3aow_A 256 DDPYGELRYSGNP--EK---KIKALDNE-GRVIYLGTFSKILAPGFRIGWMVGDP-GIIRKMEIAKQST----------- 317 (448)
T ss_dssp ECSCTTCBCSSCC--CC---CTGGGCTT-SCEEEEEESTTTTCGGGCCEEEEECH-HHHHHHHHHHHHH-----------
T ss_pred ECCCccccCCCCC--Cc---CHHhcCCC-CCEEEEccchhhccccccEEEEEeCH-HHHHHHHHHHHHh-----------
Confidence 66654321110 00 01111111 25678888899998223478888864 3443321100000
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhc-CC-CcEEEccCCCceE-EEEEeeCCCC
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRH-RP-GFKLVLDEPECTN-ISFWYIPPSL 557 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~-~~-g~~l~~~~p~~~~-v~F~~~p~~~ 557 (629)
+ .++.......+..+++..+ .+.++++.++..++++++.+.|++ .| ++++.. |..+. +.+++ |.+.
T Consensus 318 ------~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~--p~~g~~~~v~~-~~~~ 387 (448)
T 3aow_A 318 ------D-LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK--PEGGMFIWVTL-PDGI 387 (448)
T ss_dssp ------H-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC--CSBSSEEEEEC-STTC
T ss_pred ------c-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC--CCccEEEEEEc-CCCC
Confidence 0 0111111222222333210 233555566666788999999987 57 688654 44333 33443 2211
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
. ..++.++|.++|.++....... ...++||++++ . .++++|+.+++.|+++.+
T Consensus 388 ~---------------~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~-~-~~~e~i~~~~~~L~~~l~ 443 (448)
T 3aow_A 388 D---------------SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFT-Y-VDEDKIMEGIKRLAETIK 443 (448)
T ss_dssp C---------------HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS-S-SCTHHHHHHHHHHHHHHH
T ss_pred C---------------HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeC-C-CCHHHHHHHHHHHHHHHH
Confidence 0 1356778888886654433221 12368999996 3 489999999999987654
No 116
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.62 E-value=8.5e-14 Score=147.41 Aligned_cols=301 Identities=13% Similarity=0.073 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 256 SLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
..+++.+.+++.+..|++ ....++++|+|+++..++..... |...|++...+|.++..++...|
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g 126 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP--------------AQSKVIVPTPAYPPFFHLLSATQ 126 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--------------TTCCEEEEESCCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCCcHhHHHHHHHcC
Confidence 445666666777776654 46899999999998877765421 23346667788999999999999
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
. +++.+|.+++ +|+++|++++.+ .+..|+.+...+.+|.+-| +.+|+++|+++|+++++ +++..
T Consensus 127 ~---~~~~~~~~~~--~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 195 (377)
T 3fdb_A 127 R---EGIFIDATGG--INLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPL 195 (377)
T ss_dssp C---CEEEEECTTS--CCHHHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred C---EEEEccCCCC--CCHHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchh
Confidence 9 9999999877 999999999875 1446777777888998865 66777779999999999 66653
Q ss_pred cccc-ccccccccccccccccC-CcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 409 KLLT-APQQCSVFLTRRNYVIE-VVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 409 ~l~~-~~~~~~~~l~~~~~~i~-~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
..-. .. .. ... .+. .+.+.+..+++|+++.| ...|.+++.++.+........ .+.
T Consensus 196 ~~~g~~~--~~---~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-~~~-------------- 253 (377)
T 3fdb_A 196 VFDGQHT--VA---AGV--SDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS-PVI-------------- 253 (377)
T ss_dssp BSSSCCC--CG---GGS--CHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-HHH--------------
T ss_pred hcCCCCC--cc---cHH--HccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-Hhh--------------
Confidence 3221 10 00 000 010 12568899999999644 457877776655443321100 000
Q ss_pred CccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCCCCCch
Q psy1785 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLRGKEDQ 563 (629)
Q Consensus 486 ~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~~~~~~ 563 (629)
..+........+..+++. +.+.++++.++..++++++.+.|++ +|++++.. |..+.+. +.+...+..
T Consensus 254 ---~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 322 (377)
T 3fdb_A 254 ---KDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP--MQATYLMWIDFRDTTIE----- 322 (377)
T ss_dssp ---HCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC--CSBCSEEEEECTTSCCC-----
T ss_pred ---cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec--CCeeEEEEEECcccCCC-----
Confidence 001111122222233332 3566788889999999999999998 88998764 4444443 433221111
Q ss_pred hhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 564 ADFNELLHKVAPKIKERMMKS-GSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.++.+.+.++ |..+........ ..+++|++++ +++++|+..++.|+++.++
T Consensus 323 -----------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~---~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 323 -----------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA---TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -----------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHTT
T ss_pred -----------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence 1234555555 764433222211 2368999986 3899999999999987664
No 117
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.61 E-value=1.1e-14 Score=156.43 Aligned_cols=303 Identities=13% Similarity=0.090 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH---HHHHc
Q psy1785 256 SLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK---LAAFE 332 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k---aa~~l 332 (629)
..++..+.+++++++|.+.... ++.+||+++..++.+.. .|...|++...+|.+... .....
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~--------------~~gd~v~~~~~~~~~~~~~~~~~~~~ 139 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALL--------------QPGDTVLGMNLAQGGHLTHGSPVNFS 139 (420)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC--------------CTTCEEEEEEEC------------CH
T ss_pred HHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhc--------------CCCCEEEecchhhcceeccchhhhhc
Confidence 4566777789999999865433 34556888877765542 134456677777876432 11222
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
|.+ -..+.++.++++.+|+++|+++|.+. .+.+|+.+.+. .|...|+++|+++|++||+++++ +++.+..
T Consensus 140 g~~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~--~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 211 (420)
T 3gbx_A 140 GKL-YNIVPYGIDESGKIDYDEMAKLAKEH-----KPKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLI 211 (420)
T ss_dssp HHH-SEEEEEEECTTCSCCHHHHHHHHHHH-----CCSEEEECCTT--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred ccc-eeEEeccCCccCCcCHHHHHHHHHhc-----CCeEEEEecCc--cCCccCHHHHHHHHHHcCCEEEEECCcchhce
Confidence 321 04556677888999999999999763 23455554433 36788999999999999999999 5543332
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEecc--chhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQ--SVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~--~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
... .... .+.. +|+++.++||++++|.+ |+++.++. .+...... +.+..
T Consensus 212 ~~~--------~~~~-~~~~-~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~----~~~~~-------------- 262 (420)
T 3gbx_A 212 AAG--------VYPN-PVPH-AHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNS----AVFPS-------------- 262 (420)
T ss_dssp HTT--------SSCC-STTT-SSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHH----HHC----------------
T ss_pred ecc--------cCCc-cccc-CCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhh----hcCCC--------------
Confidence 111 0000 1344 89999999999987775 77666551 33322110 11100
Q ss_pred CCCCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHH
Q psy1785 489 IQCGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFN 567 (629)
Q Consensus 489 ~~~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~ 567 (629)
..++.. .....+..++.....++++++.++..++++++.+.|++ .|++++.+....+.+.+.+.+....
T Consensus 263 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 332 (420)
T 3gbx_A 263 AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN-RGYKVVSGGTENHLFLLDLVDKNLT--------- 332 (420)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGTCC---------
T ss_pred CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCeeccCCCCCeEEEEEcCCCCCC---------
Confidence 001111 12344455555555678889999999999999999998 4898765113444454544322111
Q ss_pred HHHhhHHHHHHHHHHhcCcEEEee------eecCCccceEEEeecC---CCCCHHHHHHHHHHHHHHhh
Q psy1785 568 ELLHKVAPKIKERMMKSGSMMITY------QPIHALPNFFRLVLQN---SALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 568 ~~l~~~~~~i~~~l~~~G~~~i~~------~~~~~~~~~lR~~~~n---~~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.++|.++... ....+ .+.+|+++.. ...++++|+++++.|+++.+
T Consensus 333 ------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 333 ------GKEADAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp ------HHHHHHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 124566777788654331 11111 2359999841 23579999999999988754
No 118
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.61 E-value=2.8e-13 Score=143.47 Aligned_cols=288 Identities=11% Similarity=0.049 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 256 SLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
..+++.+.+++.+..|++ ....++++|+++++..++.+... |...|++...+|.++..++...|
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~--------------~gd~Vl~~~~~y~~~~~~~~~~g 137 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGG--------------PGRTALGFQPSYSMHPILAKGTH 137 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCS--------------TTCEEEEEESSCTHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcC--------------CCCEEEEcCCChHHHHHHHHHcC
Confidence 467777777777776654 45788999999988766654421 33456777788999999999999
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccc
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLL 411 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~ 411 (629)
. +++.+|.++++.+|+++|++++.+. .+.+|+.+...+.+|.+.|++++.++|+.+++++++ +++....-
T Consensus 138 ~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~ 209 (369)
T 3cq5_A 138 T---EFIAVSRGADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS 209 (369)
T ss_dssp C---EEEEEECCTTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS
T ss_pred C---EEEEecCCcCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC
Confidence 8 9999999888899999999998752 234566678889999999999999999999999999 66554321
Q ss_pred cccccccccccccccccCCc-ceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccC
Q psy1785 412 TAPQQCSVFLTRRNYVIEVV-ADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHI 489 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~g-aDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 489 (629)
.. .+..-+ ..+ .+.++.++||+++.| +.+|++++++ ++.......... +
T Consensus 210 ~~------~~~~~~---~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~-----------------~-- 260 (369)
T 3cq5_A 210 PS------ATTLLE---KYPTKLVVSRTMSKAFDFAGGRLGYFVANP-AFIDAVMLVRLP-----------------Y-- 260 (369)
T ss_dssp CC------GGGGTT---TCTTTEEEEEESSSTTSCGGGCCEEEEECT-HHHHHHHTTSCT-----------------T--
T ss_pred cc------hHHHHh---hCCCCEEEEEechHhcCCcccceEEEEeCH-HHHHHHHHcCCC-----------------C--
Confidence 01 001100 113 568899999999754 3478888865 344332111100 0
Q ss_pred CCCCCcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHH
Q psy1785 490 QCGRKPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNE 568 (629)
Q Consensus 490 ~~sr~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~ 568 (629)
+ ...+..+.+...+. .+.+++..++..++++++.+.|++. |+++.. +..+.+.+.+. . +
T Consensus 261 --~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~-~------~------ 320 (369)
T 3cq5_A 261 --H--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVVP--SESNFVFFGDF-S------D------ 320 (369)
T ss_dssp --C--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEEC--CSSSEEEEECC-S------S------
T ss_pred --C--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECC--CCCeEEEEECC-C------C------
Confidence 0 12233333333332 3457778888889999999999884 888763 44555555542 0 0
Q ss_pred HHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 569 LLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 569 ~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.++|.++|..+ ... +..+++|++++ +++|++.+++.|+++.+
T Consensus 321 -----~~~l~~~l~~~gi~v-~~~---~~~~~iRis~~----~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 321 -----QHAAWQAFLDRGVLI-RDV---GIAGHLRTTIG----VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -----HHHHHHHHHHTTEEC-BCC---SCTTEEEEECC----CHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHCCEEE-EEC---CCCCeEEEEeC----CHHHHHHHHHHHHHHHh
Confidence 124667777888543 222 22368999985 79999999999988753
No 119
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.61 E-value=4.5e-14 Score=149.54 Aligned_cols=297 Identities=11% Similarity=0.040 Sum_probs=195.2
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
|...+....+++.+.+++.+..|++ ..+.++++|+|+++..++.+... |...|++...+|.++.
T Consensus 62 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~ 127 (370)
T 2z61_A 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIID--------------DGDEVLIQNPCYPCYK 127 (370)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcC--------------CCCEEEEeCCCchhHH
Confidence 3333456677788888887777754 36799999999998888776521 3346777888899999
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--e
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--T 404 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A 404 (629)
.++...|. +++.+| +|+++|++++.+ .+.+|+.+...+.+|.+.|++ |.++|+++|+++++ +
T Consensus 128 ~~~~~~g~---~~~~v~------~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~ 191 (370)
T 2z61_A 128 NFIRFLGA---KPVFCD------FTVESLEEALSD------KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEI 191 (370)
T ss_dssp HHHHHTTC---EEEEEC------SSHHHHHHHCCS------SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECT
T ss_pred HHHHHcCC---EEEEeC------CCHHHHHHhccc------CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcc
Confidence 99999998 888887 789999888753 355677778888999999999 99999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
++....-..+.. +.... +.. +.|.++.++||+++.| ..+|++++++ ++..........+.
T Consensus 192 ~~~~~~~g~~~~---~~~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~------------ 252 (370)
T 2z61_A 192 YNGLVYEGKCYS---AIEFD--ENL-EKTILINGFSKLYAMTGWRIGYVISND-EIIEAILKLQQNLF------------ 252 (370)
T ss_dssp TTTCBSSSCCCC---GGGTC--TTC-SSEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHHHHT------------
T ss_pred hhhcccCCCCcC---HHHcc--CCC-CcEEEEecChhccCCccceEEEEEECH-HHHHHHHHHHhhcc------------
Confidence 665432111100 00110 112 4899999999999743 2378888766 34332211000000
Q ss_pred CCCccCCCCCCcchHHHHHHHHhc---ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEE-EeeCCCCCC
Q psy1785 484 SGDKHIQCGRKPDVLKFWFMWKAK---GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISF-WYIPPSLRG 559 (629)
Q Consensus 484 ~~~~~~~~sr~~~al~~w~~l~~~---G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F-~~~p~~~~~ 559 (629)
. ....+..+.+..++ +.+.+++..++..++++++.+.|++. |+++.. |..+.+.+ .+ +.
T Consensus 253 -------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~-~~---- 315 (370)
T 2z61_A 253 -------I--SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNN--PIGAYYVFPNI-GE---- 315 (370)
T ss_dssp -------S--SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCC--CCBTTEECCBC-SS----
T ss_pred -------c--CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC--CCcceEEEEec-CC----
Confidence 0 11233334444444 34567778888889999999999988 887653 44333322 22 11
Q ss_pred CCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 560 KEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+ ..++.++|. ++|..+........ ..+++|++++ +++++|+.+++.|+++.+
T Consensus 316 --~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~---~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 --D-----------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA---NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --C-----------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC---SCHHHHHHHHHHHHHHHC
T ss_pred --C-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHHHh
Confidence 0 124667776 67865433222211 1358999995 699999999999988754
No 120
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.61 E-value=1.2e-13 Score=146.12 Aligned_cols=290 Identities=8% Similarity=0.032 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+....++++|+|+++..++... + +. .|++...+|.++..++...|. ++
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~-------------gd-~vl~~~p~y~~~~~~~~~~g~---~~ 122 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL--K-------------PR-RAMIVTPGFAEYGRALAQSGC---EI 122 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--C-------------CS-EEEEEESCCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--C-------------CC-eEEEeCCCcHHHHHHHHHcCC---eE
Confidence 45566788888887678999999999988777654 2 22 355566788888899999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+.+|.+++..+++ +++.++.. . ..+.+|+.+...+.+|.+-| +++|.++|+++|+++++ ++.....-..
T Consensus 123 ~~v~~~~~~~~~~--l~~~~~~~-~--~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~- 196 (364)
T 1lc5_A 123 RRWSLREADGWQL--TDAILEAL-T--PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET- 196 (364)
T ss_dssp EEEECCGGGTTCC--CTTHHHHC-C--TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC-
T ss_pred EEEeCCcccccch--hHHHHHhc-c--CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc-
Confidence 9999876333443 22333321 1 12445666777888999988 89999999999999999 6654332110
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
+ ++.. .+ ..+.+.++.++||+++.| ..+|++++.++++.......... +
T Consensus 197 ---~-~~~~--~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-----------------~------ 246 (364)
T 1lc5_A 197 ---G-FIPA--LK-DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP-----------------W------ 246 (364)
T ss_dssp ---C-SGGG--CT-TCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-----------------T------
T ss_pred ---c-hhhH--hc-cCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC-----------------C------
Confidence 0 0011 01 124789999999999855 44788873444444332111100 0
Q ss_pred CcchHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 494 KPDVLKFWFMWKAKGT-DGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 494 ~~~al~~w~~l~~~G~-~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
....+..+.+...+.. +.+++..++..++++++.+.|++.|++++. ++..+.+.+++. .. .
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~-~~--~------------- 308 (364)
T 1lc5_A 247 SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRCE-RE--D------------- 308 (364)
T ss_dssp CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEES-CT--T-------------
T ss_pred CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC--CCCCeEEEEECC-Cc--H-------------
Confidence 1234455555555543 457777788888999999999998899864 345455555542 11 0
Q ss_pred HHHHHHHHHHhcCcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 573 VAPKIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 573 ~~~~i~~~l~~~G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.++.+.|.++|..+.......+ ..+++|++++ +++|++++++.|+++.++
T Consensus 309 --~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 309 --IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp --CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhhc
Confidence 1356677788865433222211 1368999985 589999999999988654
No 121
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.61 E-value=9.6e-14 Score=150.14 Aligned_cols=298 Identities=12% Similarity=0.111 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ +.++++|||+++..++.+.. +...|+++..+|.+...++...|+ ++
T Consensus 55 ~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~---------------~gd~Vlv~~~~~~~~~~~~~~~G~---~~ 114 (424)
T 2po3_A 55 REFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG---------------LTGEVIMPSMTFAATPHALRWIGL---TP 114 (424)
T ss_dssp HHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT---------------CCSEEEEESSSCTHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---------------CCCEEEECCCccHHHHHHHHHcCC---EE
Confidence 44555677778764 68999999999988877542 123577788889999999999998 99
Q ss_pred EEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.+++++ ++.+|+++|+++|.+ .+.+|+.+ +.+|.++|+++|.++|+++|+++++ +++.+.....
T Consensus 115 ~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--- 182 (424)
T 2po3_A 115 VFADIDPDTGNLDPDQVAAAVTP------RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDG--- 182 (424)
T ss_dssp EEECBCTTTSSBCHHHHGGGCCT------TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT---
T ss_pred EEEecCCCcCCcCHHHHHHhhCc------CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECC---
Confidence 9999986 678999999988753 24455543 3689999999999999999999999 6662222211
Q ss_pred ccccccccccccCCcceEEEeCCC--CCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCC
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPH--KLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK 494 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~H--K~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 494 (629)
+.+ -.. .|.++.++| |+++. ...|+++.+++++........ .+.... .+... ......+
T Consensus 183 -------~~~-~~~-~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~-~~~~~~------~~~~~--~~g~~~~ 243 (424)
T 2po3_A 183 -------RPA-GSL-GDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALH-NFGFDL------PGGSP--AGGTNAK 243 (424)
T ss_dssp -------EET-TSS-SSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHH-BTTTTC------TTCCT--TCCCBCC
T ss_pred -------eec-ccc-cCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHH-hcCccc------ccccc--ccCcCCC
Confidence 111 012 466666655 98875 556777776445443321110 000000 00000 0111223
Q ss_pred cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC-----ceEEEEEeeCC--CCCCCCchhhHH
Q psy1785 495 PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE-----CTNISFWYIPP--SLRGKEDQADFN 567 (629)
Q Consensus 495 ~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~-----~~~v~F~~~p~--~~~~~~~~~~~~ 567 (629)
...+..+.++.. .+++++..++..++++++.+.|++++++++.. +|. +..+.+.+.+. +..
T Consensus 244 ~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~--------- 311 (424)
T 2po3_A 244 MSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVAD-HDRHGLNNHQYVIVEIDEATTGIH--------- 311 (424)
T ss_dssp CCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC-GGGGSCCCCCCEEEEECHHHHSSC---------
T ss_pred cCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccC-CCCCCccccEEEEEEECCccchhh---------
Confidence 445555555543 46788888999999999999999988998764 232 23444554210 100
Q ss_pred HHHhhHHHHHHHHHHhcCcEEEee-e-ecC------C-----ccc-------eEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 568 ELLHKVAPKIKERMMKSGSMMITY-Q-PIH------A-----LPN-------FFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 568 ~~l~~~~~~i~~~l~~~G~~~i~~-~-~~~------~-----~~~-------~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.+.|.++|...... . +.. + .++ .||+.+ +..+|++||+++++.|+++.+
T Consensus 312 ------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~-~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 312 ------RDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPT-GTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp ------HHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECC-STTCCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeC-CCCCCHHHHHHHHHHHHHHHh
Confidence 135677788888543211 1 110 0 011 277776 499999999999999987654
No 122
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.61 E-value=3.4e-14 Score=152.94 Aligned_cols=315 Identities=11% Similarity=0.034 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHHHHHH------hC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 254 VFSLMEEHVLAQMRTI------VG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l------~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
....+++.+.+++.+. .| .+..+.++++|+|+++..++.+... |...|++...+|.++
T Consensus 76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~ 141 (416)
T 1bw0_A 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD--------------AGDYALVPQPGFPHY 141 (416)
T ss_dssp CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHH
T ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC--------------CCCEEEEcCCCcHhH
Confidence 3445555555555522 12 3446789999999998877765421 334566777788889
Q ss_pred HHHHHHcCCCCCCEEEEecCCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCe
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDAR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMA 400 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~ 400 (629)
..++...|. +++.+|.+++ +.+|+++|++++.+ .+..|+.+...+.+|.+.| +++|+++|+++|++
T Consensus 142 ~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~ 212 (416)
T 1bw0_A 142 ETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212 (416)
T ss_dssp HHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCc---EEEEeecCcccCCCCCHHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 999999998 9999998754 57999999988753 2456777778889999998 99999999999999
Q ss_pred EEE--ecCccccccccc--cccccccccccccCC-cceEEEeCCCCCCCCC-CccEEEEEecc-chhhhhhcCCCCcccc
Q psy1785 401 DSV--TWNPHKLLTAPQ--QCSVFLTRRNYVIEV-VADSVTWNPHKLLTAP-QQCSVFLTRHQ-SVLTECHSASASYLFQ 473 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~--~~~~~l~~~~~~i~~-gaDsv~~~~HK~l~~P-~~~g~ll~r~~-~~l~~~~~~~~~yl~~ 473 (629)
+++ ++.....-.... ... ... .+.. +-+.++.+++|+++.| +.+|.++++++ ............+ ..
T Consensus 213 li~De~~~~~~~~g~~~~~~~~---~~~--~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~-~~ 286 (416)
T 1bw0_A 213 LFSDEIYAGMVFKGKDPNATFT---SVA--DFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRV-GM 286 (416)
T ss_dssp EEEECTTTTCBCCSSCTTCCCC---CTT--SSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHH-HH
T ss_pred EEEEccccccccCCCCCCCCcc---CHH--HccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHH-hc
Confidence 999 665532111000 000 011 1111 1246778999998765 45788888774 3322211000000 00
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEee
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYI 553 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~ 553 (629)
. +. +........+..+++..+.++++++.++..++++++.+.|++.|+++++. +.....+.+++.
T Consensus 287 ~-------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~ 351 (416)
T 1bw0_A 287 L-------------VC-GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PRGAMYLMSRID 351 (416)
T ss_dssp H-------------HT-CSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECC-CCBTTEEEEEEC
T ss_pred c-------------cc-CCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCC
Confidence 0 00 11112223333445544567888999999999999999999988998654 222333444543
Q ss_pred CCCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 554 PPSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 554 p~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.....+..+ ..++.++| .++|..+....... ..+++|++++ +++++|+..++.|+++.+
T Consensus 352 ~~~~~~~~~-----------~~~~~~~l~~~~gi~v~~g~~f~-~~~~iRis~~---~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 352 LEKYRDIKT-----------DVEFFEKLLEEENVQVLPGTIFH-APGFTRLTTT---RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp GGGBSSCCS-----------HHHHHHHHHHHHCEECEEGGGGT-CTTEEEEECC---SCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCC-----------HHHHHHHHHHHCCEEEecccccC-CCCeEEEEec---CCHHHHHHHHHHHHHHHH
Confidence 211000000 12456666 46786543332222 2358999984 579999999999887654
No 123
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.60 E-value=2.9e-15 Score=157.08 Aligned_cols=290 Identities=17% Similarity=0.199 Sum_probs=175.6
Q ss_pred HHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH---HHHHcCCCCC
Q psy1785 261 HVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK---LAAFEGLGSD 337 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k---aa~~lGlg~~ 337 (629)
++.+++++++|.+ ..++++|||+++..++.+.. .|...|+++..+|.+... .+...|.
T Consensus 42 ~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~~~~--------------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--- 102 (347)
T 1jg8_A 42 ELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT--------------QRGDEVILEADSHIFWYEVGAMAVLSGV--- 102 (347)
T ss_dssp HHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC--------------CTTCEEEEETTCHHHHSSTTHHHHHTCC---
T ss_pred HHHHHHHHHhCCc--eEEEecCcHHHHHHHHHHhc--------------CCCCEEEEcCcchhhhccccchhhccCe---
Confidence 4456788888875 57899999999887664431 134467778888987653 5667787
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc-ccccC---HHHHHHHHHHcCCeEEE--ec--Cccc
Q psy1785 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL-GAFDP---IPAIADICAEYDMADSV--TW--NPHK 409 (629)
Q Consensus 338 ~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~-G~idp---l~ei~~i~~~~~~~lhV--A~--gg~~ 409 (629)
+++.| .++++.+|+++|+++|.+....+..+.+|+....++.+ |.+-| +++|.++|+++|+++++ ++ +...
T Consensus 103 ~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~ 181 (347)
T 1jg8_A 103 MPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 181 (347)
T ss_dssp EEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHH
T ss_pred EEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchh
Confidence 88888 55678899999998875310011245667777777777 88855 57888999999999999 32 2111
Q ss_pred cccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccC
Q psy1785 410 LLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHI 489 (629)
Q Consensus 410 l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 489 (629)
.... .... +..++|++++++||+++.|. |.+++.++++......... +.. .
T Consensus 182 ~~~~--------~~~~--~~~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~-~~~-------~--------- 232 (347)
T 1jg8_A 182 ASGV--------PVKE--YAGYADSVMFCLSKGLCAPV--GSVVVGDRDFIERARKARK-MLG-------G--------- 232 (347)
T ss_dssp HHCC--------CHHH--HHHTCSEEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHH-HHT-------C---------
T ss_pred hcCC--------ChHH--hcccccEEEEecccccCCCc--eEEEEcCHHHHHHHHHHHH-HcC-------C---------
Confidence 1000 0011 11138999999999999874 4445555444433211100 000 0
Q ss_pred CCCCCcchHHHH---HHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhH
Q psy1785 490 QCGRKPDVLKFW---FMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADF 566 (629)
Q Consensus 490 ~~sr~~~al~~w---~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~ 566 (629)
+.+. ..+..+ .+++.. .+ .+++..+.++++.+.|++. ++++...++..+.+.+++...+..
T Consensus 233 -~~~~-~~~~~~~~~~~l~~~-~~----~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 296 (347)
T 1jg8_A 233 -GMRQ-AGVLAAAGIIALTKM-VD----RLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLKVN-------- 296 (347)
T ss_dssp -CCSS-THHHHHHHHHHHHHS-ST----THHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSSSC--------
T ss_pred -chhH-HHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccccCC--------
Confidence 0011 112222 223321 12 2334456778888888887 777532134455566654211110
Q ss_pred HHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 567 NELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 567 ~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|.++|...... . .+++|+++. ..++++|++++++.|+++.++
T Consensus 297 -------~~~~~~~l~~~gi~v~~~---~--~~~iRl~~~-~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 297 -------AHGFIEALRNSGVLANAV---S--DTEIRLVTH-KDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp -------HHHHHHHHHHHTEECEEE---E--TTEEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHCCCEEecC---C--CCeEEEEeC-CCCCHHHHHHHHHHHHHHHHh
Confidence 135677777888643322 1 247999995 889999999999999887643
No 124
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.60 E-value=1.2e-13 Score=150.44 Aligned_cols=226 Identities=12% Similarity=0.112 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lGlg 335 (629)
.++.+++++++|.+ ..+++.+|++++..++..... |...|+++...|.+.... +...|+
T Consensus 117 ~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~~--------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~- 179 (445)
T 1qgn_A 117 VVLEEKISALEGAE--STLLMASGMCASTVMLLALVP--------------AGGHIVTTTDCYRKTRIFIETILPKMGI- 179 (445)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSC--------------SSCEEEEETTSCHHHHHHHHHTGGGGTC-
T ss_pred HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCchhHHHHHHHHHHHcCC-
Confidence 45556788889875 567777778888777664321 334566777888876664 445677
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVP-FMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLT 412 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~-~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~ 412 (629)
+++.|+.+ |+++|+++|.+ .+ .+|.....++.+|.+.|+++|+++|+++|++++| +|.......
T Consensus 180 --~v~~v~~~-----d~~~l~~ai~~------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~ 246 (445)
T 1qgn_A 180 --TATVIDPA-----DVGALELALNQ------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK 246 (445)
T ss_dssp --EEEEECSS-----CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred --EEEEeCCC-----CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 88888864 89999999875 24 6788888999999999999999999999999999 676433221
Q ss_pred ccccccccccccccccCCcceEEEeCCCCCCCCCC--ccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 413 APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQ--QCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 413 ~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~--~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
+ ++.|+|.++.++||+++.+. ..|+++.++ +++..... +...
T Consensus 247 ~--------------~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~----~~~~----------------- 290 (445)
T 1qgn_A 247 A--------------LALGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRN----LHHI----------------- 290 (445)
T ss_dssp T--------------TTTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHH----HHHH-----------------
T ss_pred c--------------cccCCEEEEECCcccccccccceEEEEEECH-HHHHHHHH----HHHH-----------------
Confidence 1 23369999999999998543 278887765 34332211 0000
Q ss_pred CCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCc-EEEccC----C-----------CceEEEEEee
Q psy1785 491 CGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGF-KLVLDE----P-----------ECTNISFWYI 553 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~-~l~~~~----p-----------~~~~v~F~~~ 553 (629)
.+-....+..|..++. .+.+..++++..+.++++.+.|+++|++ ++..+. | ..++++|.+.
T Consensus 291 ~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 291 LGGALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp HCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred hCCCCCHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 0111234556666553 4567777888888999999999999988 444310 1 3577888874
No 125
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.60 E-value=2.2e-13 Score=143.88 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCC-eEEEEcCCcchHHHHHHHHcCCCCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPR-LVLYTSEDAHYSIKKLAAFEGLGSDN 338 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~-~vv~~s~~~H~Si~kaa~~lGlg~~~ 338 (629)
.++.+.+++++|.+..+.++++|+++++..++.+... |. ..|++..-+|.++..++...|. +
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~--------------~g~d~Vl~~~p~~~~~~~~~~~~g~---~ 123 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--------------PGKDAILYCPPTYGMYSVSAETIGV---E 123 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTTCEEEECSSSCTHHHHHHHHHTC---E
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhC--------------CCCCEEEEeCCChHHHHHHHHHcCC---E
Confidence 4566778888898777899999999998777665421 33 4577788889999999999998 8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--cCCeEEE--ecCcccccccc
Q psy1785 339 VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE--YDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 339 v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~--~~~~lhV--A~gg~~l~~~~ 414 (629)
++.+|.++++.+|+++|++++. .+.+|+.+...+.+|.+-|.+++.++++. +++++++ ++..... ..
T Consensus 124 ~~~v~~~~~~~~d~~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~- 194 (356)
T 1fg7_A 124 CRTVPTLDNWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCP-QA- 194 (356)
T ss_dssp EEECCCCTTSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSG-GG-
T ss_pred EEEeeCCCCCCCCHHHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcC-CC-
Confidence 9999998878899999988774 24567777888999999876666555443 8999999 6654321 11
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
+ +...- . ..+.+.+..+++|+++.| ..+|++++++ ++..........|
T Consensus 195 ---~-~~~~~--~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~~----------------------- 243 (356)
T 1fg7_A 195 ---S-LAGWL--A-EYPHLAILRTLSKAFALAGLRCGFTLANE-EVINLLMKVIAPY----------------------- 243 (356)
T ss_dssp ---C-SGGGT--T-TCTTEEEEEESSSTTCCGGGCCEEEEECH-HHHHHHHHHSCSS-----------------------
T ss_pred ---c-HHHHH--h-hCCCEEEEecchHhhcCchhhhEEEEeCH-HHHHHHHHhcCCC-----------------------
Confidence 0 00110 0 123678899999999743 3478888744 4443321111000
Q ss_pred CcchHHHHHHHHhcChhh---HHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHH
Q psy1785 494 KPDVLKFWFMWKAKGTDG---LEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELL 570 (629)
Q Consensus 494 ~~~al~~w~~l~~~G~~G---~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l 570 (629)
....+..+.+..++...+ +++..++..++++++.+.|++++++..+. ++..+.+.+++ |.
T Consensus 244 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~-~~--------------- 306 (356)
T 1fg7_A 244 PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-DSETNYILARF-KA--------------- 306 (356)
T ss_dssp CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CCSSSEEEEEE-TT---------------
T ss_pred CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-CCCCeEEEEEC-CC---------------
Confidence 123455566666666555 67778888889999999999986643344 34444444443 10
Q ss_pred hhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 571 HKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 571 ~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..++.++|.++|..........+..+++|+++. +++|++++++.|+++
T Consensus 307 ---~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~----~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 307 ---SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRAE 354 (356)
T ss_dssp ---HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 125677787888654320212222358999985 589999999999764
No 126
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.59 E-value=1.7e-13 Score=147.61 Aligned_cols=212 Identities=10% Similarity=0.100 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH----HHHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK----LAAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k----aa~~lGlg 335 (629)
.++.+.+++++|.+ +.++++||++++..++.+.. .|...|+++...|.+... .+...|+
T Consensus 65 ~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~--------------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~- 127 (404)
T 1e5e_A 65 SNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL--------------KAGDHLISDECLYGCTHALFEHALTKFGI- 127 (404)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--------------CTTCEEEEESCCCHHHHHHHHTHHHHTTC-
T ss_pred HHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh--------------CCCCEEEEeCCCchhHHHHHHHHHHHcCC-
Confidence 45566788888885 67888899988776665432 134467778889988877 6788888
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-cCCeEEE--ecCcccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE-YDMADSV--TWNPHKLLT 412 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~-~~~~lhV--A~gg~~l~~ 412 (629)
+++.+|.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|++ +|+++++ ++....+..
T Consensus 128 --~~~~v~~~-----d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~ 194 (404)
T 1e5e_A 128 --QVDFINTA-----IPGEVKKHMKP------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN 194 (404)
T ss_dssp --EEEEECTT-----STTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC
T ss_pred --EEEEECCC-----CHHHHHHhcCC------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC
Confidence 89999875 78888888753 36678888899999999999999999999 9999999 776544321
Q ss_pred ccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 413 APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 413 ~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
+ ++.|+|+++.++||+++.|.. +|+++++++ .+...+.....+.+
T Consensus 195 ~--------------~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~------------------ 241 (404)
T 1e5e_A 195 P--------------VDFGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDIT------------------ 241 (404)
T ss_dssp G--------------GGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCC------------------
T ss_pred c--------------cccCCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCC------------------
Confidence 1 122589999999999998877 688887764 44312111000000
Q ss_pred CCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcE
Q psy1785 491 CGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFK 537 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~ 537 (629)
+.....+..|+++..+. .+..+.++..++++++.+.|++.+.++
T Consensus 242 -g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~ 285 (404)
T 1e5e_A 242 -GSVISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKSHPAVE 285 (404)
T ss_dssp -CCCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred -CCCCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 11123456676666553 356677777888888888888876554
No 127
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.59 E-value=3.6e-14 Score=150.39 Aligned_cols=293 Identities=13% Similarity=0.100 Sum_probs=187.4
Q ss_pred HHHHHHHHh-CCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEE
Q psy1785 262 VLAQMRTIV-GFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVY 340 (629)
Q Consensus 262 ~~~~l~~l~-G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~ 340 (629)
..+.+++++ +.+....++++|||+++..++.+.. .|...|++...+|.++..++...|. +++
T Consensus 68 l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~ 130 (375)
T 3op7_A 68 FKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------------EPGDHVISLYPTYQQLYDIPKSLGA---EVD 130 (375)
T ss_dssp HHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------------CTTCEEEEEESSCTHHHHHHHHTTC---EEE
T ss_pred HHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------------CCCCEEEEeCCCchhHHHHHHHcCC---EEE
Confidence 344456655 4555789999999999988876542 1344677788889999999999998 999
Q ss_pred EEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 341 LIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 341 ~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
.+|+++ .+.+|+++|++++.. .+.+|+.+...+.+|.+-| +++|.++|++||+++++ +++....- .
T Consensus 131 ~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~-~ 203 (375)
T 3op7_A 131 LWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL-D 203 (375)
T ss_dssp EEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS-C
T ss_pred EEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc-C
Confidence 999874 345899999998853 3446777788899999999 99999999999999999 66653321 1
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCG 492 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 492 (629)
...+.. .. +.+.++.+++|.++.| ..+|++++ ++++........ .+ +..++
T Consensus 204 ---~~~~~~-----~~-~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~-~~-----------------~~~~~ 255 (375)
T 3op7_A 204 ---VPSIIE-----VY-DKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYR-DY-----------------TMICA 255 (375)
T ss_dssp ---CCCHHH-----HC-TTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTG-GG-----------------TTSCC
T ss_pred ---CCchhh-----hc-CCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHH-hh-----------------hccCC
Confidence 000001 11 2567888999999844 45688877 444444321110 00 00011
Q ss_pred CCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 493 RKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 493 r~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
.......+..+++. ..+.+++..++..++++++.+.|++.++++++. |..+...|-..+....
T Consensus 256 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------- 318 (375)
T 3op7_A 256 GVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIR--PAVVSTSFVKIAVDMP-------------- 318 (375)
T ss_dssp CHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECC--CSSSSCEEEEECCSSC--------------
T ss_pred CcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec--CCCeEEEeEEcCCCCC--------------
Confidence 11222223333332 233456666677888999999999988998764 3332222322222111
Q ss_pred HHHHHHHHH-HhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 573 VAPKIKERM-MKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 573 ~~~~i~~~l-~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.+++ .++|..+........ .+++|++++ .++++|+.+++.|+++.++
T Consensus 319 -~~~~~~~ll~~~gi~v~~g~~~~~-~~~iRi~~~---~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 319 -MEDFCLQLLQEHGVLLVPGNRFER-DGYVRLGFA---CEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp -HHHHHHHHHHHHCEECEEGGGGTC-TTEEEECCC---SCHHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHhCCEEEeChhhhCC-CCeEEEEec---CCHHHHHHHHHHHHHHHHH
Confidence 12455555 577865433332222 468999985 2348999999999887654
No 128
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.59 E-value=1.3e-13 Score=148.39 Aligned_cols=303 Identities=15% Similarity=0.134 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH-HHHHHH--HcC
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS-IKKLAA--FEG 333 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S-i~kaa~--~lG 333 (629)
.++....+++++++|.+. ..+++++||+++..++.+.. .|...|++...+|.+ +...+. ..|
T Consensus 78 ~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~--------------~~gd~Vi~~~~~~~~~~~~~~~~~~~g 142 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALA--------------KPGDTVLGMSLDAGGHLTHGAKPALSG 142 (425)
T ss_dssp HHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC--------------CTTCEEEEECC----------------
T ss_pred HHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHcc--------------CCCCEEEEcccccccceecchhhhhcc
Confidence 344555577889998764 22458899999887776542 144467777788877 323322 334
Q ss_pred CCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 334 LGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 334 lg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
.+. .++.++.+ +++.+|+++|+++|.+. .+.+|+.+. ...|...++++|+++|++||+++++ ++..+..
T Consensus 143 ~~~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~ 214 (425)
T 3ecd_A 143 KWF-NALQYGVSRDTMLIDYDQVEALAQQH-----KPSLIIAGF--SAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVI 214 (425)
T ss_dssp --C-EEEEECCCTTTSSCCHHHHHHHHHHH-----CCSEEEEEC--SCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHH
T ss_pred cce-eeeecCCCcccCccCHHHHHHHHhhc-----CCcEEEEcc--ccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhh
Confidence 311 34455555 34789999999998752 233455543 3348899999999999999999999 5443332
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
... .... .+.. +|+++.++||++++|. .|+++.+++.+...... +.... ..
T Consensus 215 ~~~--------~~~~-~~~~-~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~----~~~~~--------------~~ 265 (425)
T 3ecd_A 215 AAG--------RHAN-PVEH-AHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINS----AVFPG--------------LQ 265 (425)
T ss_dssp HTT--------SSCC-GGGT-CSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHH----HHC------------------
T ss_pred hcc--------cccC-chhc-CcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHh----hhCcc--------------cc
Confidence 211 0000 1344 8999999999997776 47777765443332211 11100 00
Q ss_pred CCCC-cchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHH
Q psy1785 491 CGRK-PDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNEL 569 (629)
Q Consensus 491 ~sr~-~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~ 569 (629)
++.. .....++.++.....+++++..++..++++++.+.|.+. |++++.+....+.+.+.+.+....
T Consensus 266 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----------- 333 (425)
T 3ecd_A 266 GGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGLK----------- 333 (425)
T ss_dssp -CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC-----------
T ss_pred CCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCCC-----------
Confidence 1111 133445556655566788899999999999999999985 898765223444555554322111
Q ss_pred HhhHHHHHHHHHHhcCcEEEeee-ecC----CccceEEEeec---CCCCCHHHHHHHHHHHHHHhh
Q psy1785 570 LHKVAPKIKERMMKSGSMMITYQ-PIH----ALPNFFRLVLQ---NSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~~~-~~~----~~~~~lR~~~~---n~~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.++|..+.... +.. ...+.+|+++. ....++++|+++++.|+++.+
T Consensus 334 ----~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~ 395 (425)
T 3ecd_A 334 ----GAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE 395 (425)
T ss_dssp ----HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHh
Confidence 1245677777886543211 110 11247999942 255679999999999987654
No 129
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.59 E-value=1.2e-13 Score=147.97 Aligned_cols=213 Identities=16% Similarity=0.101 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lGlg 335 (629)
.++.+++++++|.+ ..+++++|++++..++.+.. .|...|+++..+|.+.... +...|+
T Consensus 62 ~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~--------------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~- 124 (389)
T 3acz_A 62 EQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL--------------QKGDHLIAGDTLYGCTVSLFTHWLPRFGI- 124 (389)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC--------------CTTCEEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh--------------CCCCEEEEeCCCchHHHHHHHHHHHHcCC-
Confidence 45566788888876 67888889988876665431 1334577788888886665 577888
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+++.++. .|+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ ++...... .
T Consensus 125 --~~~~v~~-----~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-~ 190 (389)
T 3acz_A 125 --EVDLIDT-----SDVEKVKAAWKP------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-K 190 (389)
T ss_dssp --EEEEECT-----TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-C
T ss_pred --EEEEECC-----CCHHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-C
Confidence 8888886 488888888753 356788888999999999999999999999999999 77654321 2
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
| ++.++|+++.++||+++.|.+ +|+++.++.++...... +... +
T Consensus 191 ~-------------~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~----~~~~----------~------- 236 (389)
T 3acz_A 191 P-------------LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF----YRKD----------A------- 236 (389)
T ss_dssp G-------------GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH----HHHH----------H-------
T ss_pred c-------------cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH----HHHh----------c-------
Confidence 1 123599999999999999987 68888876344432211 0000 0
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV 539 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~ 539 (629)
+.....+..|..++.+ +.+..+.++..++++.+.+.|++.+.++-+
T Consensus 237 g~~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~ 282 (389)
T 3acz_A 237 GSLMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282 (389)
T ss_dssp CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 0012345666666554 456667788888899999999887665433
No 130
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.59 E-value=3e-13 Score=140.84 Aligned_cols=279 Identities=13% Similarity=0.114 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+..+.++++|+++++..++... |...|++...+|.++..+++..|+ ++
T Consensus 54 ~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~----------------~gd~vl~~~p~~~~~~~~~~~~g~---~~ 114 (337)
T 3p1t_A 54 PRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF----------------SSMRFVTAWPGFDGYRARIAVSGL---RH 114 (337)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS----------------TTSEEEEESSSCSHHHHHHTTSCC---EE
T ss_pred HHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc----------------CCCeEEEeCCCcHHHHHHHHHcCC---EE
Confidence 55667788889988778999999999877665532 123467788899999999999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.+|.++++.+|+++|+++. .+.+|+.+...+.+|.+-|++++.++|+.+++ +++ +|+.......
T Consensus 115 ~~v~~~~~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~---- 181 (337)
T 3p1t_A 115 FEIGLTDDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRA---- 181 (337)
T ss_dssp EEECBCTTSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSS----
T ss_pred EEecCCCCCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccc----
Confidence 99999988999999987651 24678888889999999999999999999996 444 6654221111
Q ss_pred cccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcc
Q psy1785 418 SVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 496 (629)
Q Consensus 418 ~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~ 496 (629)
....... .+.++.+++|+++ ....+|+++..+ .+........ .. . ...
T Consensus 182 ------~~~~~~~-~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~--------~~-------------~--~~~ 230 (337)
T 3p1t_A 182 ------RGLAYGE-NELVFRSFSKSYGLAGLRLGALFGPS-ELIAAMKRKQ--------WF-------------C--NVG 230 (337)
T ss_dssp ------SCCCCBT-TEEEEEESSSTTCCTTTCCEEEECCH-HHHHHHHTTS--------CT-------------T--CSC
T ss_pred ------cccccCC-CEEEEeeCchhccCcchheEEEEeCH-HHHHHHHhhc--------CC-------------C--CCC
Confidence 0001222 6789999999997 446678777644 3443321100 00 0 011
Q ss_pred hHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHH
Q psy1785 497 VLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAP 575 (629)
Q Consensus 497 al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~ 575 (629)
.+....+..++. .+.+.+..++..++++++.+.|++. |+++. ++..+.+.|.. +.. .
T Consensus 231 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~-~~~------------------~ 288 (337)
T 3p1t_A 231 TLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA--SSEANFVLVEN-AAG------------------E 288 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC--CCSSSEEEEEC-TTT------------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC--CCCCeEEEEEc-CCH------------------H
Confidence 222223333332 2457788888888999999999987 88754 35555555543 110 1
Q ss_pred HHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 576 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 576 ~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.+.+.|.++|..+...... +..+++|++++ +++|+++++++|+++.++
T Consensus 289 ~~~~~l~~~gi~v~~g~~~-~~~~~iRis~~----~~~~~~~l~~al~~~~~~ 336 (337)
T 3p1t_A 289 RTLRFLRERGIQVKDAGQF-GLHHHIRISIG----REEDNDRLLAALAEYSDH 336 (337)
T ss_dssp HHHHHHHHTTEECEEGGGG-TCCSEEEEECC----CHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCeEEEECccC-CCCCeEEEecC----CHHHHHHHHHHHHHHhhc
Confidence 3556777888644332222 33468999985 799999999999988653
No 131
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.59 E-value=3.7e-13 Score=142.72 Aligned_cols=302 Identities=11% Similarity=-0.015 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCC--C-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQG--G-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~--~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa 329 (629)
+....+++.+.+++.+..|.+. . +.++++|+++++..++.+... |...|++...+|.++..++
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~ 128 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTE--------------PEDLLLLPEVAYPSYFGAA 128 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcC--------------CCCEEEECCCCcHhHHHHH
Confidence 3555666776777777679862 3 799999999998877765421 3345677788899999999
Q ss_pred HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--e
Q psy1785 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--T 404 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A 404 (629)
...|. +++.+|.++...+|+++|+++|.. .+.+|+.+...+.+|.+-| +++|+++|+++|+++++ +
T Consensus 129 ~~~g~---~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~ 199 (376)
T 2dou_A 129 RVASL---RTFLIPLREDGLADLKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNP 199 (376)
T ss_dssp HHTTC---EEEEECBCTTSSBCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHcCC---EEEEeeCCCCCCCCHHHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 99998 899999844446899999998863 2556777777888898866 67888999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
+.....-..+. + ++... +.. +.+.++.+++|+++.| ..+|+++.++ ++..........+
T Consensus 200 ~~~~~~~~~~~--~-~~~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~------------- 259 (376)
T 2dou_A 200 YVDQVYEGEAP--S-PLALP--GAK-ERVVELFSLSKSYNLAGFRLGFALGSE-EALARLERVKGVI------------- 259 (376)
T ss_dssp TGGGBSSSCCC--C-GGGST--TGG-GTEEEEEEHHHHHTCGGGCCEEEEECH-HHHHHHHHHHHHH-------------
T ss_pred chhcccCCCCC--C-hhhcC--CCC-CcEEEEecchhhcCChhheeEEEecCH-HHHHHHHHHHHhc-------------
Confidence 65543211100 0 00110 111 3678889999999754 3478877644 4443321100000
Q ss_pred CCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EEEEeeCCCCCCCCc
Q psy1785 484 SGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-ISFWYIPPSLRGKED 562 (629)
Q Consensus 484 ~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~F~~~p~~~~~~~~ 562 (629)
+ .+........+..+++. +.+.+++..++..++++++.+.|++. +++.. |..+. +.+++. ....
T Consensus 260 ----~-~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~--~~~~~~~~~~~~-~~~~---- 324 (376)
T 2dou_A 260 ----D-FNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LSLLP--PRATMYLWGRLP-EGVD---- 324 (376)
T ss_dssp ----C-CCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECC--CCBSSEEEEECC-TTCC----
T ss_pred ----c-cCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccC--CCeeEEEEEECC-CCCC----
Confidence 0 01111112222223332 35667788888889999999999886 76543 44443 334442 1110
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.++|.++|..+....... ...+++|++++ . ++++|+.+++.|+++.
T Consensus 325 -----------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~-~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 325 -----------DLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV-R--PLEELLEAAKRIREAL 375 (376)
T ss_dssp -----------HHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC-S--CHHHHHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHHHHh
Confidence 1256778888886543322221 12358999996 3 7899999999988753
No 132
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.59 E-value=1.4e-13 Score=147.05 Aligned_cols=290 Identities=13% Similarity=0.054 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.+++++++|.+....++++|||+++..++.+++... .+..+|+.....|.+...+....|..
T Consensus 88 ~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~-----------~~~~vi~~~~~y~~~~~~~~~~~g~~~~ 156 (395)
T 1vef_A 88 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT-----------GRKKFVAAMRGFSGRTMGSLSVTWEPKY 156 (395)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH-----------SCCEEEEETTCCCCSSHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh-----------CCCeEEEEcCCcCCCchhhhhhcCCccc
Confidence 34666777888887766678999999999998888765310 12446666666677666666665541
Q ss_pred -------CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE-
Q psy1785 336 -------SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV- 403 (629)
Q Consensus 336 -------~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV- 403 (629)
..++..++. .|+++|+++|.+ .+.+|+++...+.+|.+.| +++|+++|++||+++++
T Consensus 157 ~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~D 225 (395)
T 1vef_A 157 REPFLPLVEPVEFIPY-----NDVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILD 225 (395)
T ss_dssp HGGGCSCSSCEEEECT-----TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccCCCCCCeeEeCC-----CcHHHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 012444443 489999888853 3556666665666898877 99999999999999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++++......+..+ ... ++ ++|.+++ ||+++.+..+|+++++++ +.... ... .+
T Consensus 226 ea~~~~~~~g~~~~~----~~~--~~--~~d~~s~--sK~~~~g~~~G~~~~~~~-~~~~l-~~~-~~------------ 280 (395)
T 1vef_A 226 EIQTGMGRTGKRFAF----EHF--GI--VPDILTL--AKALGGGVPLGVAVMREE-VARSM-PKG-GH------------ 280 (395)
T ss_dssp CTTTTTTTTSSSSTH----HHH--TC--CCSEEEE--CGGGGTTSSCEEEEEEHH-HHHTS-CTT-SS------------
T ss_pred ecccCCccCCchhHh----hhc--CC--CCCEEEE--cccccCCCceEEEEehHH-HHhhh-ccC-Cc------------
Confidence 67642211110000 111 11 3787755 999998888999999874 43321 110 00
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEEEEeeCCCCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~F~~~p~~~~~~~ 561 (629)
...+ +........+..+++.+.. .+..++..++++++.+.|++.+. .++.. ++..+.+.|.+...
T Consensus 281 -~~~~---~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~~------ 346 (395)
T 1vef_A 281 -GTTF---GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKEK------ 346 (395)
T ss_dssp -CCSS---TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESSC------
T ss_pred -CCCc---CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEEEEEEEEcCh------
Confidence 0000 1111223333444544332 34567777899999999988742 21110 22334555654311
Q ss_pred chhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 562 DQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..++.+.|. ++|..+ .. . + .+++|++++ ..++++|++++++.|+++.
T Consensus 347 ------------~~~l~~~l~~~~gi~v-~~--~-~-~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 347 ------------AAPYIARLEKEHRVLA-LQ--A-G-PTVIRFLPP-LVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ------------SHHHHHHHHHHHCEEC-EE--S-S-TTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHCCeEE-ec--C-C-CCEEEEeCC-CCCCHHHHHHHHHHHHHHh
Confidence 025667777 788543 22 1 2 358999985 8899999999999998764
No 133
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.58 E-value=2.6e-13 Score=144.96 Aligned_cols=303 Identities=10% Similarity=0.046 Sum_probs=195.5
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCC-eEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPR-LVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~-~vv~~s~~~H~Si 325 (629)
|...+....+.+.+.+++.+..|++ ..+.++++|+|+++..++.+... |. ..|++...+|.++
T Consensus 72 y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~--------------~g~d~vl~~~p~~~~~ 137 (398)
T 3ele_A 72 YTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTS--------------DAYDEFITIAPYFPEY 137 (398)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------------STTCEEEEESSCCTHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcC--------------CCCCEEEEeCCCchhh
Confidence 3334445677788888888888854 46899999999998887765521 33 4567777889999
Q ss_pred HHHHHHcCCCCCCEEEEecCCC-CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH-----
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAE----- 396 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~~-g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~----- 396 (629)
..++...|. +++.+|.+++ +.+|+++|++++.+ .+.+|+.+...+.+|.+-| +.+|+++|++
T Consensus 138 ~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~ 208 (398)
T 3ele_A 138 KVFVNAAGA---RLVEVPADTEHFQIDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEI 208 (398)
T ss_dssp HHHHHHTTC---EEEEECCCTTTSSCCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---EEEEEecCCcCCcCCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhcc
Confidence 999999998 9999999864 58999999998853 3556777788899999988 6677789998
Q ss_pred -cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchh----hhhhcCCC
Q psy1785 397 -YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVL----TECHSASA 468 (629)
Q Consensus 397 -~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l----~~~~~~~~ 468 (629)
+++++++ +++....-..+ .+ ... ... +.+.++.+++|+++ ....+|.+++++.... ...+.
T Consensus 209 ~~~~~li~De~~~~~~~~~~~--~~---~~~--~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--- 277 (398)
T 3ele_A 209 GRPIFIIADEPYREIVYDGIK--VP---FVT--KYY-DNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVC--- 277 (398)
T ss_dssp TSCCEEEEECTTTTCBCTTCC--CC---CGG--GTC-SSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHH---
T ss_pred CCCeEEEEeccccccccCCCC--cC---ChH--hhc-CCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHH---
Confidence 9999999 66653321110 00 000 112 26788999999998 5567899888764211 10000
Q ss_pred CccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-
Q psy1785 469 SYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN- 547 (629)
Q Consensus 469 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~- 547 (629)
..... ...-....+..+.+...+.... ..++..++++++.+.|++. ++++.. |..+.
T Consensus 278 -~~~~~---------------~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~ 335 (398)
T 3ele_A 278 -GAGRA---------------LGYVCAPSLFQKMIVKCQGATG---DINAYKENRDLLYEGLTRI-GYHCFK--PDGAFY 335 (398)
T ss_dssp -HHHHH---------------TTCCCSCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHHHH-TCCEEC--CSBSSE
T ss_pred -HHhhh---------------ccccCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHc-CCeecC--CCeeEE
Confidence 00000 0000112233333333332222 2455666788888888887 887764 44444
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 548 v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+.+.+ |.. . ..++.+.|.++|..+...... +..+++|++++ +++++|+.+++.|+++.+
T Consensus 336 ~~~~~-~~~-~---------------~~~~~~~l~~~gi~v~~g~~~-~~~~~iRis~~---~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 336 MFVKA-LED-D---------------SNAFCEKAKEEDVLIVAADGF-GCPGWVRISYC---VDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp EEEEC-SSS-C---------------HHHHHHHHHTTTEECEESGGG-TCTTEEEEECC---SCHHHHHHHHHHHHHHHH
T ss_pred EEEEc-CCC-C---------------HHHHHHHHHHCCEEEeCcccc-CCCCeEEEEec---CCHHHHHHHHHHHHHHHH
Confidence 33433 210 0 125667788888654333222 22468999984 699999999999988765
Q ss_pred c
Q psy1785 628 D 628 (629)
Q Consensus 628 ~ 628 (629)
+
T Consensus 395 ~ 395 (398)
T 3ele_A 395 K 395 (398)
T ss_dssp H
T ss_pred H
Confidence 3
No 134
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.57 E-value=1.1e-13 Score=150.14 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=157.8
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH----
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK---- 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k---- 327 (629)
.|.... +.+++++++|.+. ++++++|++++..++.+.. .|...|+++..+|.+...
T Consensus 81 ~p~~~~----le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al~--------------~~Gd~Vi~~~~~y~~~~~~~~~ 140 (430)
T 3ri6_A 81 NPTVED----LEQRLKNLTGALG--VLALGSGMAAISTAILTLA--------------RAGDSVVTTDRLFGHTLSLFQK 140 (430)
T ss_dssp CHHHHH----HHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC--------------CTTCEEEEETTCCHHHHHHHHT
T ss_pred CHHHHH----HHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh--------------CCCCEEEEcCCCchhHHHHHHH
Confidence 455544 4456888888754 7888888988877766542 244567888889988776
Q ss_pred HHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 328 LAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
.+...|+ +++.|+.+ |+++|+++|.+ .+.+|.....++.+|.+.|+++|+++|+++|++++| ++
T Consensus 141 ~~~~~G~---~~~~v~~~-----d~~~l~~ai~~------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~ 206 (430)
T 3ri6_A 141 TLPSFGI---EVRFVDVM-----DSLAVEHACDE------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTM 206 (430)
T ss_dssp HHHHTTC---EEEEECTT-----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHHcCC---EEEEeCCC-----CHHHHHHhhCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 6677888 89999876 89999888853 466788888999999999999999999999999999 67
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCC--CccEEEEEeccchhhh---------hhcCCCCccccC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP--QQCSVFLTRHQSVLTE---------CHSASASYLFQK 474 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P--~~~g~ll~r~~~~l~~---------~~~~~~~yl~~~ 474 (629)
+...+..+ .+.|+|+++.+++|++++| ..+|+++++.+..... .+. ...|+...
T Consensus 207 ~~~~~~~~--------------~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g-~~~~i~~~ 271 (430)
T 3ri6_A 207 TPPYLLEA--------------KRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG-PMAFLYKA 271 (430)
T ss_dssp SCTTTCCG--------------GGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG-GGHHHHHH
T ss_pred cccccCCh--------------HHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc-hhhHHHHH
Confidence 65443221 2346999999999999876 2456666544321110 000 00011000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
... .....+.....+..|+.++ |.+.+..++++..++++++.+.|++.|+++-+.
T Consensus 272 ~~~---------~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~ 326 (430)
T 3ri6_A 272 RKE---------VFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVN 326 (430)
T ss_dssp HHT---------HHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred HHH---------HHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEE
Confidence 000 0000122335667777665 567788889999999999999999999988665
No 135
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.57 E-value=1.3e-13 Score=143.71 Aligned_cols=279 Identities=12% Similarity=0.105 Sum_probs=175.6
Q ss_pred HHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH----HHcCCCC
Q psy1785 261 HVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA----AFEGLGS 336 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa----~~lGlg~ 336 (629)
++.+.+++++|.+ +.+++.+||+++..++.+.. .|...|+++..+|.+...++ ...|+
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--------------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~-- 63 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--------------KAGDHLISDDCLYGCTHALFEHQLRKFGV-- 63 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--------------CTTCEEEEESCCCHHHHHHHHTHHHHTTC--
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--------------CCCCEEEEcCCCcchHHHHHHHHHHhcCC--
Confidence 3456788999986 56777777988877766542 13345777888898877664 45777
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-cCCeEEE--ecCccccccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE-YDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~-~~~~lhV--A~gg~~l~~~ 413 (629)
+++.++. +|+++|+++|.+ .+.+|+.+...+.+|.+.|+++|.++|++ +|+++++ ++..+.+..+
T Consensus 64 -~~~~~~~-----~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~ 131 (331)
T 1pff_A 64 -EVDFIDM-----AVPGNIEKHLKP------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP 131 (331)
T ss_dssp -EEEEECT-----TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG
T ss_pred -EEEEeCC-----CCHHHHHHhhcC------CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCCh
Confidence 8888875 578888887753 35678888899999999999999999999 9999999 6664433211
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
++.++|.++.++||+++.|.+ +|++++++++...........| .
T Consensus 132 --------------~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--------------------~ 177 (331)
T 1pff_A 132 --------------LDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI--------------------T 177 (331)
T ss_dssp --------------GGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------C
T ss_pred --------------hhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------c
Confidence 123589999999999999877 7888877634443321111000 0
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC--------------CcEEEcc--CCCceEEEEEeeCC
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP--------------GFKLVLD--EPECTNISFWYIPP 555 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~--------------g~~l~~~--~p~~~~v~F~~~p~ 555 (629)
+.....+..|..+..+ +.+..+.++..+.++.+.+.|++.+ ++++..+ ....+.++|.+.
T Consensus 178 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 253 (331)
T 1pff_A 178 GAIISPHDAWLITRGT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-- 253 (331)
T ss_dssp CCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--
T ss_pred CCCCCHHHHHHHHcCc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--
Confidence 0111233344433322 2233344444555555655555443 3332210 013456777653
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee----------e--------------cCCc-cceEEEeecCCCC
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ----------P--------------IHAL-PNFFRLVLQNSAL 610 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~----------~--------------~~~~-~~~lR~~~~n~~~ 610 (629)
. . ..+.+.|.+.|.+..... + ..+. .+++|+++. ..+
T Consensus 254 ~------~-----------~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~ 315 (331)
T 1pff_A 254 G------L-----------EKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-CEN 315 (331)
T ss_dssp S------H-----------HHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-SSC
T ss_pred C------H-----------HHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEe-cCC
Confidence 0 0 235566777775321110 0 0011 368999996 889
Q ss_pred CHHHHHHHHHHHHHH
Q psy1785 611 DHSDMDYFIDEIERL 625 (629)
Q Consensus 611 t~edid~l~~~i~~l 625 (629)
|+++|+.++++|+++
T Consensus 316 t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 316 VQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 136
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.57 E-value=2.5e-13 Score=145.97 Aligned_cols=305 Identities=7% Similarity=-0.015 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQ---GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~---~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa 329 (629)
+....+++.+.+++.+..|.+ ....++++|+|+++..++.+... |...|++...+|.++..++
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~ 150 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN--------------PGDYVLLPDPGYTDYLAGV 150 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHH
Confidence 456677777777887777976 25789999999998877765421 3345666777888888999
Q ss_pred HHcCCCCCCEEEEecCCCC-CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--
Q psy1785 330 AFEGLGSDNVYLIKTDARG-RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV-- 403 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g-~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV-- 403 (629)
...|. +++.+|.+++| .+|+++|++++.. .+.+|+.+...+.+|.+-| +++|.++|+++|+++++
T Consensus 151 ~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 221 (404)
T 2o1b_A 151 LLADG---KPVPLNLEPPHYLPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDF 221 (404)
T ss_dssp HHTTC---EEEEEECCTTTCCCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEEC
T ss_pred HHCCC---EEEEeccCcccCcCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 99998 99999998644 6899999999863 2456666777788898865 78899999999999999
Q ss_pred ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
+++...+-..+.. ++... + ..+.+.++.++||+++.| +.+|+++.++ ++......... +.
T Consensus 222 ~~~~~~~~g~~~~---~~~~~--~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~-~~----------- 282 (404)
T 2o1b_A 222 AYGAFGFDAKNPS---ILASE--N-GKDVAIEIYSLSKGYNMSGFRVGFAVGNK-DMIQALKKYQT-HT----------- 282 (404)
T ss_dssp TTTTCBSSSCCCC---GGGST--T-HHHHEEEEEESTTTTTCGGGCCEEEEECH-HHHHHHHHHHH-HH-----------
T ss_pred cchhcccCCCCCC---hhhcC--C-CCCCEEEEEecchhccCchhheEeEecCH-HHHHHHHHHHh-hc-----------
Confidence 6665432111000 00110 0 113688999999999754 3478877644 44433211000 00
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EEEEeeCCCCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-ISFWYIPPSLRGKE 561 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~F~~~p~~~~~~~ 561 (629)
+ .+........+..+|+. +.+.+++..++..++.+++.+.|++. ++++.. |..+. +.+++ |....
T Consensus 283 -----~-~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~-~~~~~--- 348 (404)
T 2o1b_A 283 -----N-AGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH--AKGGIYVWLET-PPGYD--- 348 (404)
T ss_dssp -----C-CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC--CCBSSEEEEEC-CTTCC---
T ss_pred -----c-CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC--CCcceEEEEeC-CCCCC---
Confidence 0 01111111222223332 35667788888888999999999988 888654 44443 33443 22110
Q ss_pred chhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 562 DQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|. +.|..+........ ..+++|++++ . ++++|+.+++.|+++.++
T Consensus 349 ------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~-~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 349 ------------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLA-L--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ------------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECC-S--CTTHHHHHHHHHHGGGGG
T ss_pred ------------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEc-C--CHHHHHHHHHHHHHHHHh
Confidence 124566666 46865433222211 2358999996 3 688999999999887653
No 137
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.56 E-value=2.1e-13 Score=148.23 Aligned_cols=317 Identities=12% Similarity=0.086 Sum_probs=183.4
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+.+++++|.+ ..+++++||+++..++.+.+.... .+.+. .|...|+++..+|.+...++...|. ++
T Consensus 65 ~~l~~~la~~~g~~--~~i~~~sGt~a~~~al~~l~~~~~---~~~~~--~~gd~Vi~~~~~~~~~~~~~~~~g~---~~ 134 (437)
T 3bb8_A 65 DAFEKKLGEYLGVP--YVLTTTSGSSANLLALTALTSPKL---GVRAL--KPGDEVITVAAGFPTTVNPTIQNGL---IP 134 (437)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCGGG---GGGSC--CTTCEEEECSSSCHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHHHHCCC--cEEEeCCHHHHHHHHHHHhhhccc---ccccC--CCcCEEEECCCCcHHHHHHHHHcCC---EE
Confidence 45556688888876 689999999988888776531100 00001 2445688899999999999999998 89
Q ss_pred EEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccccc
Q psy1785 340 YLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 340 ~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~ 416 (629)
+.+++++ ++.+|+++|+++|.+ .+.+|+.+. ..|...|+++|.++|+++|+++++ ++..+.....
T Consensus 135 ~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--- 202 (437)
T 3bb8_A 135 VFVDVDIPTYNVNASLIEAAVSD------KTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDG--- 202 (437)
T ss_dssp EECCEETTTTEECGGGHHHHCCT------TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETT---
T ss_pred EEEeccCccCCcCHHHHHHhcCC------CCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECC---
Confidence 9999886 789999999988853 344555543 567889999999999999999999 6653332211
Q ss_pred ccccccccccccCCcceEEEeC---CCCCCCCCCccEEEEEeccchhhhhhcCCCCcccc------CC--------cCC-
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWN---PHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQ------KD--------KFY- 478 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~---~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~------~~--------~~~- 478 (629)
+.++ .. +|.++++ .||+ |.+.|.+++.++..+.........+-.. .. ..+
T Consensus 203 -------~~~~-~~-~d~~~~s~~~~k~l---~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (437)
T 3bb8_A 203 -------KMAG-TF-GDIGTVSFYPAKHI---TMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLG 270 (437)
T ss_dssp -------EETT-SS-SSEEEEECSTTSSS---CCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCS
T ss_pred -------eecc-cc-cCEEEEECcCCcCC---CCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccc
Confidence 1111 12 6776666 4543 3333344444433333211100001100 00 000
Q ss_pred Cc--cc-CCCCccCCCCC-CcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCC-----CceEEE
Q psy1785 479 DT--KY-DSGDKHIQCGR-KPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP-----ECTNIS 549 (629)
Q Consensus 479 ~~--~~-~~~~~~~~~sr-~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p-----~~~~v~ 549 (629)
.. .+ ..+.....+.+ +...+...+++..+ +.+.+.+++..++++++.+.|++++++.++...+ ...++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 348 (437)
T 3bb8_A 271 SLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFP 348 (437)
T ss_dssp CCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEE
T ss_pred cccccccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEE
Confidence 00 00 00000001111 12333333333332 4456777778899999999999988887653111 112233
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeee-------ec-CC--------c-------cceEEEeec
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ-------PI-HA--------L-------PNFFRLVLQ 606 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~-------~~-~~--------~-------~~~lR~~~~ 606 (629)
+.+..+. +.. ...+.+.|.++|...-... +. .. . ...||+++.
T Consensus 349 ~~~~~~~--~~~------------~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 414 (437)
T 3bb8_A 349 ITLKEDS--GVS------------RIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIY 414 (437)
T ss_dssp EEECGGG--SSC------------HHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCS
T ss_pred EEECCcC--cCc------------HHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCC
Confidence 3332110 000 1356778888886421111 10 00 0 125999984
Q ss_pred CCCCCHHHHHHHHHHHHHHhh
Q psy1785 607 NSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 607 n~~~t~edid~l~~~i~~l~~ 627 (629)
+.+|++|||++++.|+++.+
T Consensus 415 -~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 415 -PGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp -TTCCHHHHHHHHHHHHHHTT
T ss_pred -CCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999998754
No 138
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.56 E-value=1.6e-13 Score=146.54 Aligned_cols=307 Identities=10% Similarity=0.072 Sum_probs=191.3
Q ss_pred ChhHHHHHHHHHHHH-HHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH
Q psy1785 252 SPVFSLMEEHVLAQM-RTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA 330 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l-~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~ 330 (629)
+|....+|+ .+ ++++| .....+++++||+++..++.+..- .|...|+++..+|.+...++.
T Consensus 35 ~~~~~~l~~----~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~-------------~~Gd~Vi~~~~~~~~~~~~~~ 96 (377)
T 3ju7_A 35 GPINQRFEQ----TIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKR-------------KKGKYALMPSFTFPATPLAAI 96 (377)
T ss_dssp CHHHHHHHH----HHHHHTST-TCSEEEEESCHHHHHHHHHHHHSC-------------TTCCEEEEESSSCTHHHHHHH
T ss_pred CHHHHHHHH----HHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCCcHHHHHHHH
Confidence 455544544 46 88888 234689999999998877765311 245568889999999999999
Q ss_pred HcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCc
Q psy1785 331 FEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNP 407 (629)
Q Consensus 331 ~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg 407 (629)
..|. +++.++++ +++.+|+++|+++|.... ..+.+|+ ..+.+|.+.|+++|.++|+ +|+++++ ++..
T Consensus 97 ~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~~~---~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~ 166 (377)
T 3ju7_A 97 WCGL---EPYFIDISIDDWYMDKTVLWDKIEELK---EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGF 166 (377)
T ss_dssp HTTC---EEEEECBCTTTCSBCHHHHHHHHHHHG---GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCT
T ss_pred HcCC---EEEEEecCCccCCcCHHHHHHHHhcCC---CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCcc
Confidence 9998 99999998 568999999999984321 0134444 3467899999999999999 9999999 4432
Q ss_pred cccccccccccccccccccc--cCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 408 HKLLTAPQQCSVFLTRRNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 408 ~~l~~~~~~~~~~l~~~~~~--i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
+..... +..| +.. ++.+++++||+++. ...|+++++++.+........ .+-. .. .++..
T Consensus 167 g~~~~~----------~~~g~~~~d-~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~-~~g~--~~----~~~~~ 227 (377)
T 3ju7_A 167 GLMNGG----------MHYGQDFSG-MIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMG-NFGF--DT----NRECT 227 (377)
T ss_dssp TCEETT----------EETTTTCSS-EEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHT-BTTB--CT----TSCBC
T ss_pred CCeECC----------EeccCCCCc-EEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHH-hcCC--CC----CCcee
Confidence 222111 1111 122 67778889999987 356777777665444322111 0000 00 00000
Q ss_pred CccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEE-ccC-C--Cce-EEEEEeeCCCCCCC
Q psy1785 486 DKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV-LDE-P--ECT-NISFWYIPPSLRGK 560 (629)
Q Consensus 486 ~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~-~~~-p--~~~-~v~F~~~p~~~~~~ 560 (629)
.+...-+...+..++.+.. .+.+.++.++..++++++.+.|++++++++. ... . ... .++++. +....
T Consensus 228 --~~g~~~~~~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 300 (377)
T 3ju7_A 228 --MMGFNCKMSEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILC-PEEVR-- 300 (377)
T ss_dssp --SSCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEEC-CTTSC--
T ss_pred --eccccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEe-CChhh--
Confidence 0111122345555555443 4678888999999999999999998764221 101 1 111 123433 21100
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeee--ecC-----------Cc-------cceEEEeecCCCCCHHHHHHHHH
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQ--PIH-----------AL-------PNFFRLVLQNSALDHSDMDYFID 620 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~--~~~-----------~~-------~~~lR~~~~n~~~t~edid~l~~ 620 (629)
..++.+.|.++|...-.+. ++. .. ...||+.+. +.+|++||+++++
T Consensus 301 -------------~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~-~~~t~~di~~v~~ 366 (377)
T 3ju7_A 301 -------------NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW-EGMTKEIVEQIVI 366 (377)
T ss_dssp -------------HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC-TTCCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC-CCCCHHHHHHHHH
Confidence 1367888888885321111 110 00 247999984 9999999999999
Q ss_pred HHHHHh
Q psy1785 621 EIERLG 626 (629)
Q Consensus 621 ~i~~l~ 626 (629)
.|+++.
T Consensus 367 ~l~~~~ 372 (377)
T 3ju7_A 367 CLGQKV 372 (377)
T ss_dssp HHTC--
T ss_pred HHHHHH
Confidence 998764
No 139
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.56 E-value=4.7e-13 Score=143.98 Aligned_cols=309 Identities=8% Similarity=-0.013 Sum_probs=193.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--CC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGF--QG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL 328 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~--~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka 328 (629)
.+....+++.+.+++.+..|. +. .+.++++|+|+++..++.+.. .|...|++...+|.++..+
T Consensus 74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--------------~~gd~Vl~~~p~~~~~~~~ 139 (412)
T 2x5d_A 74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--------------DHGDTILVPNPSYPIHIYG 139 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--------------CTTCEEEEEESCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--------------CCCCEEEEcCCCchhHHHH
Confidence 344566777777777777786 33 589999999999888876542 1334567777889999999
Q ss_pred HHHcCCCCCCEEEEecCCC-C-CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE
Q psy1785 329 AAFEGLGSDNVYLIKTDAR-G-RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV 403 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~-g-~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV 403 (629)
+...|. +++.+|.+++ | .+|+++|++++.. .+.+|+.+...+.+|.+-| +++|+++|+++|+++++
T Consensus 140 ~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 140 AVIAGA---QVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp HHHHTC---EEEEEECSTTSCHHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCC---EEEEeecCCccCCCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 999998 9999999875 3 4788888887742 2345556677788898865 68899999999999999
Q ss_pred --ecCcccccccccccccccccccc-ccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCC
Q psy1785 404 --TWNPHKLLTAPQQCSVFLTRRNY-VIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYD 479 (629)
Q Consensus 404 --A~gg~~l~~~~~~~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~ 479 (629)
++.....-..+. . ....+ +.. +.|.++.++||+++.| +.+|++++++ ++........ .+.
T Consensus 211 De~~~~~~~~g~~~-~----~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~~~-------- 274 (412)
T 2x5d_A 211 DLAYADIVYDGWKA-P----SIMQVPGAK-DIAVEFFTLSKSYNMAGWRIGFMVGNP-ELVSALARIK-SYH-------- 274 (412)
T ss_dssp ECTTTTCBCTTCCC-C----CGGGSTTGG-GTEEEEEECC-CCSCTTSCCEEEEECH-HHHHHHHHHH-HHH--------
T ss_pred eccccccccCCCCC-C----ChhhccCcc-CcEEEEecCccccCCcccceEEEEcCH-HHHHHHHHHH-hhh--------
Confidence 666543211100 0 00111 112 4789999999999743 4578888754 3443221100 000
Q ss_pred cccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EEEEeeCCCCC
Q psy1785 480 TKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-ISFWYIPPSLR 558 (629)
Q Consensus 480 ~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~F~~~p~~~~ 558 (629)
+ .+........+..+++ .+.+.+++..++..++++++.+.|++. |++++ .|..+. +.+++ |....
T Consensus 275 --------~-~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~-~~~~~ 340 (412)
T 2x5d_A 275 --------D-YGTFTPLQVAAIAALE-GDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE--NPKASMYVWAKI-PEPYA 340 (412)
T ss_dssp --------C-CCCCHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC--CCSBSSEEEEEC-CTTTG
T ss_pred --------c-cCCCHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec--CCCeeeEEEEEc-CCccC
Confidence 0 0111111222222333 245667888888889999999999987 77764 355443 33443 22110
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMK-SGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.. + ..++.++|.+ .|..+....... ...+++|++++ . ++++|+.+++.|+++.++
T Consensus 341 ~~-~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~-~--~~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 341 HL-G-----------SLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALI-E--NRDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp GG-C-----------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-S--CHHHHHHHHHHHHHHHHH
T ss_pred CC-C-----------HHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHHHHHHh
Confidence 00 0 1356677754 586543322221 11358999996 3 799999999999877543
No 140
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.56 E-value=4.2e-13 Score=146.70 Aligned_cols=320 Identities=13% Similarity=0.145 Sum_probs=177.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH-HHHHHHHcCCCCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS-IKKLAAFEGLGSDN 338 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S-i~kaa~~lGlg~~~ 338 (629)
.++.+++++++|. ..+++|+|||+++..++.+++... ...|- .+.+|+++ ..|+. ...+....|. .
T Consensus 79 ~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~~~~----~~~Gd---~~~~viv~-~~~~~~~~~~~~~~g~---~ 145 (467)
T 1ax4_A 79 YDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYK----QKEGK---AKNPVFIS-NFHFDTTAAHVELNGC---K 145 (467)
T ss_dssp HHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHH----HHTTC---CSSCEEEE-SSCCHHHHHHHHHTTC---E
T ss_pred HHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHHHhh----ccCCC---ccceEEEe-ccccchhhHHHhccCC---c
Confidence 3445667888876 478999999999999998886521 11231 11113444 67754 4566777776 6
Q ss_pred EEEEecC----------CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc-ccc---cCHHHHHHHHHHcCCeEEE-
Q psy1785 339 VYLIKTD----------ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL-GAF---DPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 339 v~~V~~d----------~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~-G~i---dpl~ei~~i~~~~~~~lhV- 403 (629)
++.++.+ .++.+|+++|+++|.+.. ...+.+|+.+...+.+ |.+ +++++|+++|++||+++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 146 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp EEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred eecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 6666532 146899999999997631 1135567666666666 554 6789999999999999999
Q ss_pred -ecCc-cccccc-----cccccccccccccc---cCCcceEEEeCCCCCCCCCCccEEEEEecc-chhhhhhcCCCCccc
Q psy1785 404 -TWNP-HKLLTA-----PQQCSVFLTRRNYV---IEVVADSVTWNPHKLLTAPQQCSVFLTRHQ-SVLTECHSASASYLF 472 (629)
Q Consensus 404 -A~gg-~~l~~~-----~~~~~~~l~~~~~~---i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~-~~l~~~~~~~~~yl~ 472 (629)
++.. ...+.. .... ....++ ... +|++++++||+++.|.| |+++.+++ ++..........+
T Consensus 224 e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-- 295 (467)
T 1ax4_A 224 SARFCENAYFIKARDPKYKNA----TIKEVIFDMYKY-ADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM-- 295 (467)
T ss_dssp CTTHHHHHHHHHHHCGGGTTC----CHHHHHHHHGGG-CSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH--
T ss_pred chhhhhcchhccccccccCCC----chhhhhhhhccc-cceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc--
Confidence 3211 011000 0000 000000 023 89999999999998854 55555645 5544321111000
Q ss_pred cCCcCCCcccCCCCccCCCCCCcc-hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEE
Q psy1785 473 QKDKFYDTKYDSGDKHIQCGRKPD-VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFW 551 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~sr~~~-al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~ 551 (629)
... .. .++.... ...+..++...-. ++.+++..++++++.+.|++ ++++++. +.....+.+.
T Consensus 296 ~~~---------~~---~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~~~~~~~~ 358 (467)
T 1ax4_A 296 EGF---------VT---YGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIPIQY-PTGGHAVFVD 358 (467)
T ss_dssp TCS---------TT---TTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCCBCS-SCCSSEEEEE
T ss_pred ccc---------cc---cCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCCccc-CCCceEEEEe
Confidence 000 00 0111111 1112223433211 23445555778899999988 5887654 3333333343
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeeec-------CC-----ccceEEEeecCCCCCHHHHHHH
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQPI-------HA-----LPNFFRLVLQNSALDHSDMDYF 618 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~~-------~~-----~~~~lR~~~~n~~~t~edid~l 618 (629)
.. .-+.... ...+. ..++.++| .+.|..+...... .+ ..+++|+++....+|++||+++
T Consensus 359 ~~-~~~~~~~-~~~~~------~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~ 430 (467)
T 1ax4_A 359 CK-KLVPQIP-GDQFP------AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYI 430 (467)
T ss_dssp ST-TTCTTSC-GGGCH------HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHH
T ss_pred hh-hhccccc-cCCCC------HHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHH
Confidence 11 0000000 00000 13567777 7788654331110 01 1268999996345899999999
Q ss_pred HHHHHHHhh
Q psy1785 619 IDEIERLGH 627 (629)
Q Consensus 619 ~~~i~~l~~ 627 (629)
++.|+++.+
T Consensus 431 ~~~l~~~~~ 439 (467)
T 1ax4_A 431 ADALIGLKE 439 (467)
T ss_dssp HHHHHTTHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 141
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.56 E-value=3.5e-13 Score=142.13 Aligned_cols=283 Identities=11% Similarity=0.066 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCE
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNV 339 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v 339 (629)
.++.+++++++|.+..+.++++|+|+++..++.+... |...|++...+|.++..++...|. ++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~p~~~~~~~~~~~~g~---~~ 130 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA--------------EGEEIGYVHPSYSYYGTLAEVQGA---RV 130 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSSCTHHHHHHHHHTC---EE
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhC--------------CCCEEEEcCCChHHHHHHHHHCCC---EE
Confidence 4556778888898777899999999998877765421 334567788889999999999998 99
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccccccc
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQC 417 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~ 417 (629)
+.+|.++++.+ ++|++.+ .+.+|+.+...+.+|.+-|++++.++|+++|+++++ +++... ..
T Consensus 131 ~~v~~~~~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~--~~---- 194 (360)
T 3hdo_A 131 RTFGLTGDFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFA--ES---- 194 (360)
T ss_dssp EEECBCTTSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGS--SC----
T ss_pred EEeeCCCCCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhC--Cc----
Confidence 99999877666 3332221 123677777889999999999999999999999999 665421 10
Q ss_pred cccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcc
Q psy1785 418 SVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 496 (629)
Q Consensus 418 ~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~ 496 (629)
+ .+... .. .+.+.++.+++|+++.| ..+|+++. ++++.......... + +.....
T Consensus 195 ~-~~~~~--~~-~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~-----------------~---~~~~~~ 249 (360)
T 3hdo_A 195 N-ALELV--RR-HENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDH-----------------Y---NLDRLA 249 (360)
T ss_dssp C-CTHHH--HH-CSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCS-----------------C---CSCHHH
T ss_pred c-hhHHh--cc-CCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCC-----------------C---CCCHHH
Confidence 0 00000 01 12568888999998744 56788777 43444332111100 0 011112
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHH
Q psy1785 497 VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPK 576 (629)
Q Consensus 497 al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~ 576 (629)
...+..+++. .+.+++..++..++++++.+.|++. ++++. ++..+.+.+... +.. ..+
T Consensus 250 ~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~~--~~~---------------~~~ 307 (360)
T 3hdo_A 250 QAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDVI--PSQGNYLFATPP--DRD---------------GKR 307 (360)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC--CCSSSEEEEECT--TCC---------------HHH
T ss_pred HHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc--CCCccEEEEECC--CCC---------------HHH
Confidence 2222333332 4557888889999999999999998 88864 345555545432 110 135
Q ss_pred HHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 577 IKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 577 i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+.+.|.++|..+ ......+..+++|++++ +++|+|+++++|+++.+
T Consensus 308 l~~~l~~~gi~v-~~~~~~~~~~~iRis~~----~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 308 VYDGLYARKVLV-RHFSDPLLAHGMRISIG----TREEMEQTLAALKEIGE 353 (360)
T ss_dssp HHHHHHHTTEEC-BCCCSTTTTTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCEEE-EECCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence 677888888543 32221233468999985 89999999999998764
No 142
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.55 E-value=9.9e-13 Score=145.64 Aligned_cols=336 Identities=10% Similarity=0.034 Sum_probs=204.3
Q ss_pred ccccccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcch
Q psy1785 246 VYTYEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHY 323 (629)
Q Consensus 246 ~~~~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~ 323 (629)
...|...+....+.+.+.+++.+..|++ ..+.++|+|+++++..++.+... .|...|++..-+|.
T Consensus 127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------------~~gd~Vlv~~p~y~ 193 (500)
T 3tcm_A 127 TGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-------------NEKDGILVPIPQYP 193 (500)
T ss_dssp SSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-------------STTEEEEEEESCCT
T ss_pred CCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-------------CCCCEEEEeCCCcH
Confidence 3445556667778888888888887854 36889999999998777665421 14557888889999
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHcC
Q psy1785 324 SIKKLAAFEGLGSDNVYLIKTDAR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD---PIPAIADICAEYD 398 (629)
Q Consensus 324 Si~kaa~~lGlg~~~v~~V~~d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id---pl~ei~~i~~~~~ 398 (629)
++..++...|. +++.++++++ +.+|+++|+++|.+..++|..+.+|+.+...+.+|.+- .+.+|.++|++++
T Consensus 194 ~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~ 270 (500)
T 3tcm_A 194 LYSASIALHGG---ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEG 270 (500)
T ss_dssp HHHHHHHHTTC---EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 99999999998 9999999875 48999999999998777776677788888889999884 4667777799999
Q ss_pred CeEEE--ecCccccccccccccccccc-ccccc-CCcce-EEEeCCCCCC-CCC-CccEEEEEe--ccchhhhhhcCCCC
Q psy1785 399 MADSV--TWNPHKLLTAPQQCSVFLTR-RNYVI-EVVAD-SVTWNPHKLL-TAP-QQCSVFLTR--HQSVLTECHSASAS 469 (629)
Q Consensus 399 ~~lhV--A~gg~~l~~~~~~~~~~l~~-~~~~i-~~gaD-sv~~~~HK~l-~~P-~~~g~ll~r--~~~~l~~~~~~~~~ 469 (629)
+++++ +|+...+-......+ +... ..++. ....+ .+..+++|.+ +.| .-+|.+.+. ++............
T Consensus 271 ~~li~Deay~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~ 349 (500)
T 3tcm_A 271 LVLLADEVYQENIYVDNKKFHS-FKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV 349 (500)
T ss_dssp CEEEEECTTTTCBCCTTCCCCC-HHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT
T ss_pred CEEEEecCccccccCCCCCCCc-HHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc
Confidence 99999 776644311100000 0000 11111 11133 4456999998 433 336777763 44444332110000
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhc--C-------hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK--G-------TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~--G-------~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
+ .|+.......+..++... + .+-+.++.++..++++++.+.|+++||+++.
T Consensus 350 ~-------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~- 409 (500)
T 3tcm_A 350 N-------------------LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN- 409 (500)
T ss_dssp T-------------------CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-
T ss_pred c-------------------cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-
Confidence 0 122111112222222100 1 1234556677788899999999999999875
Q ss_pred cCCCceEEEEE-eeCCCCCCCCchhhHHHHHhh--HHHHHHHHHHhcCcEEEeeeecC--CccceEEEeecCCCCCHHHH
Q psy1785 541 DEPECTNISFW-YIPPSLRGKEDQADFNELLHK--VAPKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDM 615 (629)
Q Consensus 541 ~~p~~~~v~F~-~~p~~~~~~~~~~~~~~~l~~--~~~~i~~~l~~~G~~~i~~~~~~--~~~~~lR~~~~n~~~t~edi 615 (629)
+|..+.++|- +..+. ...+..+.+.. -...+.+.|.+.|..++...... ...++||++++ +++++|
T Consensus 410 -~~~g~~~~~~~~~lp~-----~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~---~~~e~i 480 (500)
T 3tcm_A 410 -EAEGAMYVFPQICLPQ-----KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL---PQEDKI 480 (500)
T ss_dssp -CCCBTTEECCEECCCH-----HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC---SCTTTH
T ss_pred -cCCeEEEEeeeecCch-----hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC---CCHHHH
Confidence 4665555442 21110 00000000000 00112355666786654432221 12358999995 788999
Q ss_pred HHHHHHHHHHhh
Q psy1785 616 DYFIDEIERLGH 627 (629)
Q Consensus 616 d~l~~~i~~l~~ 627 (629)
+.+++.|+++.+
T Consensus 481 ~~~i~~l~~~~~ 492 (500)
T 3tcm_A 481 PAVISRFTVFHE 492 (500)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 143
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.55 E-value=1.4e-12 Score=141.19 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH----HHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA----AFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa----~~lGlg 335 (629)
.++.+.+++++|.+ ..+++++||+++..++.+.. .|...|+++..+|.+....+ ...|+
T Consensus 61 ~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~--------------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~- 123 (421)
T 2ctz_A 61 DVLEKRLAALEGGK--AALATASGHAAQFLALTTLA--------------QAGDNIVSTPNLYGGTFNQFKVTLKRLGI- 123 (421)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--------------CTTCEEEECSCCCHHHHHHHHTHHHHTTC-
T ss_pred HHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh--------------CCCCEEEEeCCCchHHHHHHHHHHHHcCC-
Confidence 45556688888876 45777778999888776542 13456788899999877765 67787
Q ss_pred CCCEEEE-ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec-Cccccc
Q psy1785 336 SDNVYLI-KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW-NPHKLL 411 (629)
Q Consensus 336 ~~~v~~V-~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~-gg~~l~ 411 (629)
+++.+ +.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ ++ +.. ..
T Consensus 124 --~~~~~~~~~-----d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g-~~ 189 (421)
T 2ctz_A 124 --EVRFTSREE-----RPEEFLALTDE------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG-YL 189 (421)
T ss_dssp --EEEECCTTC-----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG-TS
T ss_pred --EEEEECCCC-----CHHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc-cc
Confidence 88888 654 88899888854 466788889999999999999999999999999999 77 433 22
Q ss_pred cccccccccccccccccCCcceEEEeCCCCCCCCCCc-cEEEEEec--cch----hhhhhcCCCCccccCCc-CCC-ccc
Q psy1785 412 TAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ-CSVFLTRH--QSV----LTECHSASASYLFQKDK-FYD-TKY 482 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~-~g~ll~r~--~~~----l~~~~~~~~~yl~~~~~-~~~-~~~ 482 (629)
..+ +..++|++++++||+++.|.. .|.+++++ ..+ +.........|-..... ..+ ..+
T Consensus 190 ~~~-------------~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~ 256 (421)
T 2ctz_A 190 LRP-------------LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAF 256 (421)
T ss_dssp CCG-------------GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHH
T ss_pred CCc-------------cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHH
Confidence 121 123599999999999998764 67677753 222 11111111111000000 000 000
Q ss_pred CCCC---ccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 483 DSGD---KHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 483 ~~~~---~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
.... .....+.....+..|+.++. .+-+..++++..++++++.+.|+++|+++.+.
T Consensus 257 ~~~~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 315 (421)
T 2ctz_A 257 IVKARVDGLRDQGQALGPFEAWVVLLG--METLSLRAERHVENTLHLAHWLLEQPQVAWVN 315 (421)
T ss_dssp HHHHHHTHHHHHCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcC--cchHHHHHHHHHHhHHHHHHHHHhCCCeeEEE
Confidence 0000 00012223456666766553 44566778888899999999999999998874
No 144
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.54 E-value=5.7e-13 Score=142.04 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA 330 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~ 330 (629)
.....+.+.+.+++.+..|++ ..+.++|+|+++++..++.+.. .|...|++..-+|.++..+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~--------------~~gd~Vlv~~p~y~~~~~~~~ 133 (385)
T 1b5p_A 68 AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL--------------DPGDEVIVLSPYWVSYPEMVR 133 (385)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--------------CTTCEEEEEESCCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc--------------CCCCEEEEcCCCchhHHHHHH
Confidence 345667777777777777753 3578999999999887766542 134456677778899999999
Q ss_pred HcCCCCCCEEEEecCC--CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--
Q psy1785 331 FEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV-- 403 (629)
Q Consensus 331 ~lGlg~~~v~~V~~d~--~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV-- 403 (629)
..|. +++.||.++ ++.+|+++|++++.+ .+.+|+.+...+.+|.+-| +.+|.++|+++|+++++
T Consensus 134 ~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 204 (385)
T 1b5p_A 134 FAGG---VVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204 (385)
T ss_dssp HTTC---EEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCC---EEEEeecCcccCCCCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 9998 999999985 458999999888753 2556777788899999855 89999999999999999
Q ss_pred ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
+|+....-... . .... +..+.+.++.+++|+++.| .-+|+++.++ .+......... +
T Consensus 205 ~~~~~~~~~~~--~----~~~~--~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~~l~~~~~-~------------ 262 (385)
T 1b5p_A 205 IYEHLLYEGEH--F----SPGR--VAPEHTLTVNGAAKAFAMTGWRIGYACGPK-EVIKAMASVSR-Q------------ 262 (385)
T ss_dssp TTTTCBSSSCC--C----CGGG--TCTTTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHH-T------------
T ss_pred cchhcccCCCC--C----CHHH--cCCCCEEEEEechhhcCCcccceEEEEeCH-HHHHHHHHHHh-h------------
Confidence 66543221010 0 1111 1112578899999999754 2378888754 34332211000 0
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhc-----ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAK-----GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSL 557 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~-----G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~ 557 (629)
. +.....+..+.+..++ +.+.+++..++..+..+++.+.|++. |+++.. |..+.+.+--.+. .
T Consensus 263 --~------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~-~ 330 (385)
T 1b5p_A 263 --S------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVR--PSGAFYVLMDTSP-I 330 (385)
T ss_dssp --T------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC--CSBTTEEEEECTT-T
T ss_pred --c------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC--CCeeEEEEEecCC-C
Confidence 0 0011223333332222 34456777788888899999999987 887643 4433222211121 0
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+.. ..++.+.|.++|..+....... ..+++|++++ +++++|+..++.|+++.+
T Consensus 331 -~~~------------~~~l~~~l~~~gv~v~~g~~f~-~~~~iRis~~---~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 331 -APD------------EVRAAERLLEAGVAVVPGTDFA-AFGHVRLSYA---TSEENLRKALERFARVLG 383 (385)
T ss_dssp -CSS------------HHHHHHHHHHTTEECEESGGGT-CTTEEEEECC---SCHHHHHHHHHHGGGGC-
T ss_pred -CCC------------HHHHHHHHHHCCeEEecccccC-CCCeEEEEec---CCHHHHHHHHHHHHHHHh
Confidence 110 1356777778886544333322 2468999985 788999999888876543
No 145
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.54 E-value=2e-13 Score=143.63 Aligned_cols=290 Identities=13% Similarity=0.158 Sum_probs=175.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH---HHHHcCCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK---LAAFEGLGS 336 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k---aa~~lGlg~ 336 (629)
.++.+++++++|.+ ..+++++||+++..++.+.... | ...+|+++...|++... .+...|.
T Consensus 50 ~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~~~--------g----d~~~vi~~~~~~~~~~~~~~~~~~~g~-- 113 (357)
T 3lws_A 50 EPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWSDE--------T----DNRTVAYHPLCHLEIHEQDGLKELHPI-- 113 (357)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHHHH--------H----TCCEEEECTTCHHHHSSTTHHHHHSSC--
T ss_pred HHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHhhc--------C----CCcEEEecccceeeeeccchhhhccCc--
Confidence 34456688888875 4688899999998887766543 1 12267778888888765 3455566
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc-ccccC---HHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL-GAFDP---IPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~-G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
+++.++. +++.+|+++|+++. + +.+|+.....+.+ |.+-| +++|+++|++||+++|+ ++.....
T Consensus 114 -~~~~v~~-~~~~~d~~~l~~~~-----~---~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 183 (357)
T 3lws_A 114 -ETILVGA-ADRLMTLDEIKALP-----D---IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEML 183 (357)
T ss_dssp -EEEECSC-TTSCCCHHHHHTCC-----S---CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred -EEEEecC-CCCCcCHHHHhcCc-----C---cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhh
Confidence 7777774 56789999998772 1 3345555555555 77654 88999999999999999 5431111
Q ss_pred --ccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 411 --LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 411 --~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
... ....+ ... +|+++.++||++++|.+ |+++. ++++.......... . ..
T Consensus 184 ~~~~~--------~~~~~-~~~-~d~~~~s~sK~~~~~~g-g~~~~-~~~~~~~~~~~~~~-~-------~~-------- 235 (357)
T 3lws_A 184 PYYEK--------TAAEI-AGL-FDSIYISFYKGLGGIAG-AILAG-PAAFCQTARIWKRR-Y-------GG-------- 235 (357)
T ss_dssp HHHTC--------CHHHH-HTT-SSEEEEESSSTTCCSSC-EEEEE-CHHHHHHHHHHHHH-T-------TC--------
T ss_pred hhcCC--------ChHHH-Hhc-CCEEEEeccccCCCCce-EEEEc-CHHHHHHHHHHHHH-h-------cC--------
Confidence 111 01111 123 89999999999988877 66554 54554432111000 0 00
Q ss_pred CCCCCCcc--hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhH
Q psy1785 489 IQCGRKPD--VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADF 566 (629)
Q Consensus 489 ~~~sr~~~--al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~ 566 (629)
..+... +.....+++. ..+.+++..++++++.+.|++++|+++...++..+.+.+++.... ..
T Consensus 236 --~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~ 300 (357)
T 3lws_A 236 --DLISLYPYIVSADYYYEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA--------AD 300 (357)
T ss_dssp --CCSCCHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCH--------HH
T ss_pred --CcccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCCh--------HH
Confidence 001111 1112222322 233445567788999999999999998531456666666654210 00
Q ss_pred HHHHhhHHHHHHHHHHhcCcEEEeee-ecCCccceEEEeecCC--CCCHHHHHHHHHHHHHH
Q psy1785 567 NELLHKVAPKIKERMMKSGSMMITYQ-PIHALPNFFRLVLQNS--ALDHSDMDYFIDEIERL 625 (629)
Q Consensus 567 ~~~l~~~~~~i~~~l~~~G~~~i~~~-~~~~~~~~lR~~~~n~--~~t~edid~l~~~i~~l 625 (629)
-..++.+.|.++|.++.... ...+ ..++|+++... ..++++++..++.|.+.
T Consensus 301 ------~~~~~~~~l~~~Gi~v~~g~~~~~~-~~~~r~~i~~~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 301 ------ISPKLEQVQEETGLGFVGYLVDKDG-YCSTEISVGDAYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp ------HHHHHHHHHHHHCEESCSCCEECSS-EEEEEEEBCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCeEEecccccCCC-ceEEEEEecchhhhcCHHHHHHHHHHHHHh
Confidence 01356778888886432211 1122 24899998633 35788888888777654
No 146
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.54 E-value=1.1e-13 Score=145.52 Aligned_cols=292 Identities=13% Similarity=0.164 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH---HHHcCCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL---AAFEGLGS 336 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka---a~~lGlg~ 336 (629)
.++.+++++++|.+. .++++|||+++..++.+.+.. | ...+|+++...|++.... +...|.
T Consensus 51 ~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~~~--------g----~~~vvi~~~~~~~~~~~~~~~~~~~g~-- 114 (359)
T 3pj0_A 51 EDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWADR--------K----ENRRVAYHPLSHLEIHEQDGLKELQQI-- 114 (359)
T ss_dssp HHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHHHH--------H----TCCEEEECTTCHHHHSSTTHHHHHHCC--
T ss_pred HHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHHhc--------C----CCcEEEEeccceeeehhcchHHHhcCc--
Confidence 555667889998864 488899999998888776654 1 233677787888776532 245677
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc-ccccCHHHH---HHHHHHcCCeEEE--ecCcccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL-GAFDPIPAI---ADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~-G~idpl~ei---~~i~~~~~~~lhV--A~gg~~l 410 (629)
+++.+|. +++.+|+++|+++ . ..+.+|+.+...+.+ |.+.|++++ +++|++||+++++ ++.....
T Consensus 115 -~~~~v~~-~~~~~d~~~l~~~-~------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~ 185 (359)
T 3pj0_A 115 -TPLLLGT-ANQLLTIDDIKSL-R------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEIT 185 (359)
T ss_dssp -EEEECSC-TTSCCCHHHHHTC-S------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGH
T ss_pred -eEEecCC-cCCCcCHHHHHhc-c------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcch
Confidence 8888887 5689999999887 1 134455555444444 677665555 9999999999999 4432221
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
... .. .... +..++|+++.++||+++.|.+ |++ +.++++.......... . . .
T Consensus 186 ~~~--~~----~~~~--~~~~~d~~~~s~sK~~~~~~g-g~~-~~~~~l~~~~~~~~~~-~-~------~---------- 237 (359)
T 3pj0_A 186 PFY--QK----SAEE--ICALFDSVYVSFYKGIGGIAG-AIL-AGNDDFVQEAKIWKRR-Y-G------G---------- 237 (359)
T ss_dssp HHH--TC----CHHH--HHTTCSEEEEESSSTTCCSSC-EEE-EECHHHHHHHHHHHHH-T-T------C----------
T ss_pred hhh--CC----CHHH--hhccCCEEEEeccccCCCcce-EEE-ECCHHHHHHHHHHHHH-h-C------C----------
Confidence 000 00 0011 112489999999999998865 444 4455554432110000 0 0 0
Q ss_pred CCCCc--chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHH
Q psy1785 491 CGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNE 568 (629)
Q Consensus 491 ~sr~~--~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~ 568 (629)
..... .+...+.+++.. .+.+++..++++++.+.|++++|+++...++..+.+.+++..+. .
T Consensus 238 ~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--------~--- 301 (359)
T 3pj0_A 238 DLISLYPYILSADYYFEKR-----IGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA--------D--- 301 (359)
T ss_dssp CCSCCHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCH--------H---
T ss_pred CcchhHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCcc--------c---
Confidence 00011 112222233221 24556677889999999999999998631455666666653211 0
Q ss_pred HHhhHHHHHHHHHHhcCcEEEeee--ecCCccceEEEeecCC--CCCHHHHHHHHHHHHH
Q psy1785 569 LLHKVAPKIKERMMKSGSMMITYQ--PIHALPNFFRLVLQNS--ALDHSDMDYFIDEIER 624 (629)
Q Consensus 569 ~l~~~~~~i~~~l~~~G~~~i~~~--~~~~~~~~lR~~~~n~--~~t~edid~l~~~i~~ 624 (629)
. -...+.+.|.++|.++.... ...+ ..++|+++... ..+.++++..++.|.+
T Consensus 302 -~--~~~~l~~~l~~~GV~v~~g~~~~~~~-~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 302 -E--IGAILTKIQDETGVGISGYLQEKSAD-VCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp -H--HHHHHHHHHHHHCEECCSCCEEEETT-EEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred -h--hHHHHHHHHHhcCcEecCCccccCCC-ceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 0 12357788888886532221 1123 25899988522 3567777777766654
No 147
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.53 E-value=1.2e-12 Score=140.81 Aligned_cols=322 Identities=9% Similarity=0.068 Sum_probs=200.6
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCC---CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQG---GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~---~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si 325 (629)
|........+.+.+.+++.+.+|++. .+.++++|+++++..++..... |...|++..-+|.++
T Consensus 63 y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~ 128 (422)
T 3fvs_A 63 YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD--------------EGDEVIIIEPFFDCY 128 (422)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTH
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcC--------------CCCEEEEcCCCchhh
Confidence 33333456677888888888888753 4789999999998877765421 344566677788888
Q ss_pred HHHHHHcCCCCCCEEEEecCC----CC--------CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc---CHHHH
Q psy1785 326 KKLAAFEGLGSDNVYLIKTDA----RG--------RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD---PIPAI 390 (629)
Q Consensus 326 ~kaa~~lGlg~~~v~~V~~d~----~g--------~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id---pl~ei 390 (629)
..++...|. +++.+|.++ +| .+|+++|++++.+ .+.+|+.+...+.+|.+- ++++|
T Consensus 129 ~~~~~~~g~---~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i 199 (422)
T 3fvs_A 129 EPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELV 199 (422)
T ss_dssp HHHHHHTTC---EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHHHHHcCC---EEEEEecccccccccccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHH
Confidence 899999998 999999986 33 6899999988753 355677778888999987 59999
Q ss_pred HHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCC
Q psy1785 391 ADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSAS 467 (629)
Q Consensus 391 ~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~ 467 (629)
+++|+++|+++++ +++....-... .. ....+.-..+.+.+..+++|.++.| ..+|+++.++ .+........
T Consensus 200 ~~~~~~~~~~li~De~~~~~~~~~~~-~~----~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~ 273 (422)
T 3fvs_A 200 ASLCQQHDVVCITDEVYQWMVYDGHQ-HI----SIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD-HIMKHLRTVH 273 (422)
T ss_dssp HHHHHHHTCEEEEECTTTTCBCTTCC-CC----CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH-HHHHHHHHHH
T ss_pred HHHHHHcCcEEEEEccchhhccCCCC-CC----ChhhcccccCcEEEEecchhccCCccceEEEEEeCH-HHHHHHHHHH
Confidence 9999999999999 66653321110 00 0011101113668888999999744 5678887765 3333221100
Q ss_pred CCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHh------cChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc
Q psy1785 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA------KGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD 541 (629)
Q Consensus 468 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~------~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~ 541 (629)
.. .. .+........+..+++. ...+.+++..++..++.+++.+.|++. |++++.
T Consensus 274 -----~~----------~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 333 (422)
T 3fvs_A 274 -----QN----------SV---FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPII- 333 (422)
T ss_dssp -----HT----------TT---CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEB-
T ss_pred -----hh----------cc---CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-
Confidence 00 00 01111122222233332 235667888889999999999999998 898765
Q ss_pred CCCceEE-EEEeeCCC--CCCC-CchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC------CccceEEEeecCCCC
Q psy1785 542 EPECTNI-SFWYIPPS--LRGK-EDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH------ALPNFFRLVLQNSAL 610 (629)
Q Consensus 542 ~p~~~~v-~F~~~p~~--~~~~-~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~------~~~~~lR~~~~n~~~ 610 (629)
|..+.+ .+.+.... .... ....+. ...++.+++. +.|..+....... ...+++|++++ .
T Consensus 334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-~-- 403 (422)
T 3fvs_A 334 -PQGSYFLITDISDFKRKMPDLPGAVDEP------YDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV-K-- 403 (422)
T ss_dssp -CSBSSEEEEECHHHHHHCCCCCCCTTCC------HHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC-C--
T ss_pred -CCeeeEEEEechhhcccccccccccccc------cHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec-C--
Confidence 443333 33321100 0000 000000 0124455544 4686544322221 12368999986 3
Q ss_pred CHHHHHHHHHHHHHHhhcC
Q psy1785 611 DHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 611 t~edid~l~~~i~~l~~~l 629 (629)
++++|+.+++.|+++.+++
T Consensus 404 ~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 404 DEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp CHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhhC
Confidence 9999999999999887654
No 148
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.53 E-value=6.3e-13 Score=140.73 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCC--CeEEEEcCCcchHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIVGF--QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCP--RLVLYTSEDAHYSIKKL 328 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~--~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p--~~vv~~s~~~H~Si~ka 328 (629)
.....+.+++.+++.+.+|. +..+.++|+|+|+++..++..... | ...|++...+|.++..+
T Consensus 59 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~--------------~~~gd~vl~~~p~~~~~~~~ 124 (376)
T 3ezs_A 59 AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLF--------------DYQNPTIAYPNPFYQIYEGA 124 (376)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTT--------------TCSSCEEEEEESCCTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcC--------------CCCCCEEEEecCCcHhHHHH
Confidence 33567778888888888898 457899999999998877765432 3 34567778889999999
Q ss_pred HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--
Q psy1785 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV-- 403 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV-- 403 (629)
+...|. +++.+|.++++.+++ +|++++.+. +.+|+.+...+.+|.+-| +.+|+++|+++|+++++
T Consensus 125 ~~~~g~---~~~~~~~~~~~~~~~-~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 194 (376)
T 3ezs_A 125 AKFIKA---KSLLMPLTKENDFTP-SLNEKELQE------VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDE 194 (376)
T ss_dssp HHHTTC---EEEEEECCGGGTSCC-CCCHHHHHH------CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHcCC---EEEEcccCCCCCcch-hHHhhhccC------CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEc
Confidence 999998 999999988766766 777777642 335666778888998866 66777779999999999
Q ss_pred ecCccccccccccccccccccc-cc-cCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRN-YV-IEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~-~~-i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
+++....-..+.. ++...+ ++ -..+.+.+..+++|+++ ....+|.++..+ .+........ .+
T Consensus 195 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~-~~---------- 259 (376)
T 3ezs_A 195 CYSEIYENTPPPS---LLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDS-RLLEKYKAFR-AY---------- 259 (376)
T ss_dssp TTTTCBSSSCCCC---HHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECH-HHHHHHHHHH-TT----------
T ss_pred cchhhccCCCCCC---HHHccccccccccCcEEEEecchhccCCccceeEEEeeCH-HHHHHHHHHH-hh----------
Confidence 6665432111000 001000 00 01247889999999996 345578777643 4433221100 00
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE-EEEEeeCCCCCC
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN-ISFWYIPPSLRG 559 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~-v~F~~~p~~~~~ 559 (629)
..+ +........+..+++. .+.+++..++..++.+++.+.|+ ++. . |..+. +.+.+ |.
T Consensus 260 ----~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~~~--~--~~~~~~~~~~~-~~---- 318 (376)
T 3ezs_A 260 ----LGY---TSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---NTL--I--YPYSFYVYLPV-QN---- 318 (376)
T ss_dssp ----TCC---CCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---TCC--C--CSBSSEEEEEC-SC----
T ss_pred ----hcC---CCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---CCC--C--CCcceEEEEEC-CC----
Confidence 000 1111122222333332 34577788888888999998887 554 2 33333 33332 10
Q ss_pred CCchhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecC---CccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 560 KEDQADFNELLHKVAPKIKERMMK-SGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~---~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
..++.++|.+ +|..+....... ...+++|++++ . |++||+.+++.|+++.++
T Consensus 319 --------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~-~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 319 --------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV-Y--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp --------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC-S--CHHHHHHHHHHHHHHHCC
T ss_pred --------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc-C--CHHHHHHHHHHHHHHHHh
Confidence 1256677776 787543322221 12468999986 2 999999999999987654
No 149
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.53 E-value=3.1e-13 Score=147.47 Aligned_cols=305 Identities=13% Similarity=0.084 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCeEE-eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH-HHHH--
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQGGDGIF-CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS-IKKL-- 328 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~~~g~~-~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S-i~ka-- 328 (629)
+....+|...++++++++|.+. ..+ +.+||++|..++.+.+. |...|++...+|.+ +...
T Consensus 87 ~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~a~~~~~~--------------~Gd~Vl~~~~~~~~~~~~~~~ 150 (447)
T 3h7f_A 87 EHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAAVLHALMS--------------PGERLLGLDLANGGHLTHGMR 150 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEecCcccccccchhhh
Confidence 3344555555589999999874 344 78889998877765432 33456666666654 1111
Q ss_pred HHHcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ec
Q psy1785 329 AAFEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 329 a~~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~ 405 (629)
....|.+ -.++.++++ +++.+|+++|++++.+. .+.+|+.....+. ...|+++|+++|+++|+++++ ++
T Consensus 151 ~~~~g~~-~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~--~~~~l~~i~~l~~~~g~lli~Dea~ 222 (447)
T 3h7f_A 151 LNFSGKL-YENGFYGVDPATHLIDMDAVRATALEF-----RPKVIIAGWSAYP--RVLDFAAFRSIADEVGAKLLVDMAH 222 (447)
T ss_dssp TSHHHHS-SEEEEECCCTTTCSCCHHHHHHHHHHH-----CCSEEEEECSSCC--SCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred hhhcCCe-eEEEEcCcCcccCCcCHHHHHHHHHhc-----CCeEEEEcCCCCC--CccCHHHHHHHHHHcCCEEEEECCc
Confidence 1122210 045566666 56789999999998653 2334544433333 334999999999999999999 54
Q ss_pred CccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCC
Q psy1785 406 NPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSG 485 (629)
Q Consensus 406 gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~ 485 (629)
..+..... .... .++. +|+++.++||++++|.+ |+++.++ .+..........+.
T Consensus 223 ~~g~~~~g--------~~~~-~~~~-~di~~~s~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~~~~-------------- 276 (447)
T 3h7f_A 223 FAGLVAAG--------LHPS-PVPH-ADVVSTTVHKTLGGGRS-GLIVGKQ-QYAKAINSAVFPGQ-------------- 276 (447)
T ss_dssp THHHHHTT--------SSCC-STTT-CSEEEEESSGGGCCCSC-EEEEECG-GGHHHHHHHHTTTT--------------
T ss_pred hhhhhcCC--------CCCC-CCCC-CcEEEecCCcCCCCCCe-EEEEECH-HHHHHHhhhcCCcc--------------
Confidence 33222111 0000 1234 89999999999988876 7776655 33332211000110
Q ss_pred CccCCCCCCc-chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CCcEEEccCCCceEEEEEeeCCCCCCC
Q psy1785 486 DKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PGFKLVLDEPECTNISFWYIPPSLRGK 560 (629)
Q Consensus 486 ~~~~~~sr~~-~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g~~l~~~~p~~~~v~F~~~p~~~~~~ 560 (629)
.++... ...++..++.....+++++..++..++++++.+.|++. +|++++......+.+.+.+.+.+..
T Consensus 277 ----~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 350 (447)
T 3h7f_A 277 ----QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD-- 350 (447)
T ss_dssp ----CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC--
T ss_pred ----cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC--
Confidence 111111 23444455555556688899999999999999999886 5898765122334444444332211
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEE----ee--eecCCccceEEEeec---CCCCCHHHHHHHHHHHHHHhh
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMI----TY--QPIHALPNFFRLVLQ---NSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i----~~--~~~~~~~~~lR~~~~---n~~~t~edid~l~~~i~~l~~ 627 (629)
...+.+.|.+.|.+.. .. .+ ...++.+|+++. +...+++||+.+++.|+++..
T Consensus 351 -------------~~~~~~~l~~~GI~v~~~~i~~~~~~-p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 351 -------------GQAAEDLLHEVGITVNRNAVPNDPRP-PMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp -------------HHHHHHHHHHTTEECBC--------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCeEEecccCCCCCCC-CCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 0234555666675432 11 11 112357999873 123689999999999987653
No 150
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.53 E-value=1.1e-12 Score=141.69 Aligned_cols=289 Identities=12% Similarity=0.094 Sum_probs=184.1
Q ss_pred cChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH-
Q psy1785 251 VSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA- 329 (629)
Q Consensus 251 ~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa- 329 (629)
..|....+| +.+++++|.+ ..+++++|++++..++.+.. .|...|+++...|.+.....
T Consensus 80 ~~p~~~~le----~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~--------------~~Gd~Vi~~~~~y~~~~~~~~ 139 (415)
T 2fq6_A 80 GTLTHFSLQ----QAMCELEGGA--GCVLFPCGAAAVANSILAFI--------------EQGDHVLMTNTAYEPSQDFCS 139 (415)
T ss_dssp CCHHHHHHH----HHHHHHHTCS--EEEEESSHHHHHHHHHHTTC--------------CTTCEEEEETTSCHHHHHHHH
T ss_pred CCchHHHHH----HHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh--------------CCCCEEEEeCCCchHHHHHHH
Confidence 445554444 4578888875 46788999998877665321 13446777888888877654
Q ss_pred ---HHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--cCCeEEE-
Q psy1785 330 ---AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE--YDMADSV- 403 (629)
Q Consensus 330 ---~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~--~~~~lhV- 403 (629)
...|+ ++..++.+ |+++|+++|.+ .+.+|.....++.+|.+.|+++|+++|++ +|++++|
T Consensus 140 ~~l~~~G~---~v~~v~~~-----d~~~le~ai~~------~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD 205 (415)
T 2fq6_A 140 KILSKLGV---TTSWFDPL-----IGADIVKHLQP------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 205 (415)
T ss_dssp HTGGGGTC---EEEEECTT-----CGGGGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHcCc---EEEEECCC-----CHHHHHHhhcc------CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE
Confidence 34577 88888764 78888888754 35678888889999999999999999999 9999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
+++.... ..| ++.|+|.++.++||+++.+.+ .|+++.++ ..+...... ..
T Consensus 206 ~a~a~~~~-~~p-------------~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~~~l~~~----~~-------- 258 (415)
T 2fq6_A 206 NTWAAGVL-FKA-------------LDFGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLREN----AY-------- 258 (415)
T ss_dssp CTTTTTTS-SCG-------------GGGTCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHH----HH--------
T ss_pred CCCccccc-CCc-------------cccCCeEEEEeCccccCCCCCceEEEEEeCH-HHHHHHHHH----HH--------
Confidence 6654322 111 233699999999999997754 57777665 343322110 00
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc-cC----C-----------C
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL-DE----P-----------E 544 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~-~~----p-----------~ 544 (629)
. .+........|..++. .+.+..+.++..+++.++++.|++.|.++-+. +. | .
T Consensus 259 --~-------~G~~~~~~~a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~ 327 (415)
T 2fq6_A 259 --L-------MGQMVDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGS 327 (415)
T ss_dssp --H-------TTCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCC
T ss_pred --h-------cCCCCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCC
Confidence 0 0111234455655543 35667778888889999999999987765432 10 1 3
Q ss_pred ceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHH------hcCcE--EEee----ee---c----CCc-cceEEEe
Q psy1785 545 CTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMM------KSGSM--MITY----QP---I----HAL-PNFFRLV 604 (629)
Q Consensus 545 ~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~------~~G~~--~i~~----~~---~----~~~-~~~lR~~ 604 (629)
.++++|.+... . +..+. ..+.+.+. ..|.. .+.. .+ . .+. .+.+|++
T Consensus 328 g~i~sf~l~g~-~----~~~~~--------~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS 394 (415)
T 2fq6_A 328 SGLFSFVLKKK-L----NNEEL--------ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLH 394 (415)
T ss_dssp CSEEEEEESSC-C----CHHHH--------HHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEE
T ss_pred ceEEEEEECCC-C----CHHHH--------HHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEE
Confidence 46788876421 0 00011 12222221 12211 1111 00 0 121 3689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy1785 605 LQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 605 ~~n~~~t~edid~l~~~i~~l 625 (629)
++ ..+++++|+.+.++|+++
T Consensus 395 ~G-~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 395 IG-LEDVDDLIADLDAGFARI 414 (415)
T ss_dssp CC-SSCHHHHHHHHHHHHHTT
T ss_pred ec-CCCHHHHHHHHHHHHHhh
Confidence 97 899999999999998753
No 151
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.53 E-value=2.3e-13 Score=146.57 Aligned_cols=281 Identities=12% Similarity=0.102 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lGlg 335 (629)
.++.+.+++++|.+ ..+++.+|++++..++. . . .|...|+++...|.+.... ++..|+
T Consensus 70 ~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l----~----------~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~- 131 (403)
T 3cog_A 70 NCLEKAVAALDGAK--YCLAFASGLAATVTITH-L----L----------KAGDQIICMDDVYGGTNRYFRQVASEFGL- 131 (403)
T ss_dssp HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T----S----------CTTCEEEEESSCCHHHHHHHHHTGGGGTC-
T ss_pred HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H----h----------CCCCEEEEeCCCcchHHHHHHHHHHHcCC-
Confidence 34455677888875 56666677877665554 2 1 1344577788888875543 346687
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcC-CeEEE--ecCcccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD-MADSV--TWNPHKLLT 412 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~-~~lhV--A~gg~~l~~ 412 (629)
+++.++.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++| +++++ +|.......
T Consensus 132 --~v~~v~~~-----d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 132 --KISFVDCS-----KIKLLEAAITP------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp --EEEEECTT-----SHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred --EEEEECCC-----CHHHHHHhcCc------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 88888875 88888888753 3567888889999999999999999999999 99999 776644221
Q ss_pred ccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 413 APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 413 ~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
+ ++.++|.++.++||++++|.+ +|+++++++.+...... +...
T Consensus 199 ~--------------~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~----~~~~----------------- 243 (403)
T 3cog_A 199 P--------------LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF----LQNS----------------- 243 (403)
T ss_dssp T--------------TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH----HHHH-----------------
T ss_pred c--------------cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH----HHHh-----------------
Confidence 1 223699999999999999876 58888876554433211 0000
Q ss_pred CCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcE--------------EEcc--CCCceEEEEEeeC
Q psy1785 491 CGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFK--------------LVLD--EPECTNISFWYIP 554 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~--------------l~~~--~p~~~~v~F~~~p 554 (629)
.+-....+..|+.++.+ +.+..+.++..+++..+.+.+++.+.++ +..+ ....++++|.+..
T Consensus 244 ~g~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~ 321 (403)
T 3cog_A 244 LGAVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG 321 (403)
T ss_dssp HCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred cCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC
Confidence 00011345666666544 3345566666677777777776664432 2210 0125667776531
Q ss_pred CCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEee----------ee-------c-------CCc-cceEEEeecCCC
Q psy1785 555 PSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITY----------QP-------I-------HAL-PNFFRLVLQNSA 609 (629)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~----------~~-------~-------~~~-~~~lR~~~~n~~ 609 (629)
. . ....+.+.+.|.+.... .+ . .|. .+++|+++. ..
T Consensus 322 ~-------~-----------~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e 382 (403)
T 3cog_A 322 T-------L-----------QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LE 382 (403)
T ss_dssp C-------H-----------HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SS
T ss_pred C-------H-----------HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CC
Confidence 1 0 12233344444322110 00 0 021 368999997 78
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy1785 610 LDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 610 ~t~edid~l~~~i~~l~~ 627 (629)
+++++|+.|.++|+++.+
T Consensus 383 ~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 383 DEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 899999999999988754
No 152
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.51 E-value=1.1e-12 Score=140.58 Aligned_cols=312 Identities=9% Similarity=0.003 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHHHHHhCCC--C-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH
Q psy1785 254 VFSLMEEHVLAQMRTIVGFQ--G-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA 330 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~~--~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~ 330 (629)
....+.+.+.+++.+..|++ . .+.++++|+++++..++.+... |...|++...+|.++...+.
T Consensus 62 g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~ 127 (410)
T 3e2y_A 62 GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD--------------PGDEVIIMVPFYDCYEPMVR 127 (410)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhhHHHHH
Confidence 34567777777888777764 3 5799999999998887765421 33456667788888889999
Q ss_pred HcCCCCCCEEEEecC-----------CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHH
Q psy1785 331 FEGLGSDNVYLIKTD-----------ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAE 396 (629)
Q Consensus 331 ~lGlg~~~v~~V~~d-----------~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~ 396 (629)
..|. +++.++.+ .++.+|+++|++++.. .+.+|+.+...+.+|.+ +++++|+++|++
T Consensus 128 ~~g~---~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~ 198 (410)
T 3e2y_A 128 MAGA---VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCVK 198 (410)
T ss_dssp HTTC---EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HcCC---EEEEEeccccccccccccccCCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHH
Confidence 9998 99999986 3457899999988743 35667777888899998 689999999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCC-CCccEEEEEeccchhhhhhcCCCCcccc
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTA-PQQCSVFLTRHQSVLTECHSASASYLFQ 473 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~-P~~~g~ll~r~~~~l~~~~~~~~~yl~~ 473 (629)
+|+++++ +++....-... .. ....+....+.+.+..+++|.++. ...+|+++.++ ......... . .
T Consensus 199 ~~~~li~De~~~~~~~~~~~-~~----~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~~~~~----~-~ 267 (410)
T 3e2y_A 199 HDTLCISDEVYEWLVYTGHT-HV----KIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA-HLIKHLQTV----Q-Q 267 (410)
T ss_dssp HTCEEEEECTTTTCBCTTCC-CC----CGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH-HHHHHHHHH----H-H
T ss_pred cCcEEEEEhhhhhcccCCCC-CC----CHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH-HHHHHHHHH----H-H
Confidence 9999999 66653321110 00 011110111256888899999973 35678887755 333322110 0 0
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHh------cChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA------KGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN 547 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~------~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~ 547 (629)
. . ..+........+..+++. ...+.+++..++..++++++.+.|++. |+++.. |..+.
T Consensus 268 ~----------~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~ 331 (410)
T 3e2y_A 268 N----------S---FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIV--PDGGY 331 (410)
T ss_dssp T----------T---TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEB--CSBSS
T ss_pred h----------h---ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC--CCccE
Confidence 0 0 001111222223333331 235667888888899999999999998 998765 44333
Q ss_pred EE-EEeeC--CCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeeecCC------ccceEEEeecCCCCCHHHHHH
Q psy1785 548 IS-FWYIP--PSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQPIHA------LPNFFRLVLQNSALDHSDMDY 617 (629)
Q Consensus 548 v~-F~~~p--~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~~~~------~~~~lR~~~~n~~~t~edid~ 617 (629)
+. +.+.. ......... +.. ..++.+++ .+.|.++........ ..+++|++++ . ++++|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-~--~~e~l~~ 401 (410)
T 3e2y_A 332 FIIADVSSLGADLSDMNSD-EPY------DYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI-K--KDSTLDA 401 (410)
T ss_dssp EEEEECGGGCCCCTTCCSS-CCH------HHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC-C--CHHHHHH
T ss_pred EEEEEchhhhccccccccc-ccC------HHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc-C--CHHHHHH
Confidence 32 33321 111110000 000 01344444 456865443332211 1368999986 3 9999999
Q ss_pred HHHHHHHH
Q psy1785 618 FIDEIERL 625 (629)
Q Consensus 618 l~~~i~~l 625 (629)
+++.|+++
T Consensus 402 ~l~~l~~~ 409 (410)
T 3e2y_A 402 AEEIFRAW 409 (410)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99998764
No 153
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.51 E-value=1.9e-12 Score=136.95 Aligned_cols=287 Identities=13% Similarity=0.065 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC-----
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL----- 334 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl----- 334 (629)
.++.+++++++|++ .+.++++|||+++..++.+++.... ..+.| ...+++.....|.+...+....+.
T Consensus 73 ~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~~~~~~--~~~~g----~~~vl~~~~~y~~~~~~~~~~~~~~~~~~ 145 (375)
T 2eh6_A 73 EELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLARKYWR--DKGKN----KWKFISFENSFHGRTYGSLSATGQPKFHK 145 (375)
T ss_dssp HHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHHHH--HTTCC----CCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred HHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHHHHHhc--cCCCC----CCEEEEECCCcCCCchhhhhhcCCccccC
Confidence 45567888989984 5789999999999988876542210 00112 134555555557665555444332
Q ss_pred CC----CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE--e
Q psy1785 335 GS----DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV--T 404 (629)
Q Consensus 335 g~----~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV--A 404 (629)
|. .++..+|. +|+++|+++|.+ .+.+|+.+...+.+|.+.| +++|+++|+++|+++++ +
T Consensus 146 ~~~~~~~~~~~~~~-----~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~ 214 (375)
T 2eh6_A 146 GFEPLVPGFSYAKL-----NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEV 214 (375)
T ss_dssp TTCSCCSSEEEECT-----TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCCCCCceeCCC-----chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecc
Confidence 10 12555553 589999887753 3566777777788899988 99999999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
+++......+. ....++. . +|.++++ |+++++.++|++++++ ++.... .. ....
T Consensus 215 ~~~~~~~~~~~------~~~~~~~-~-~d~~s~S--K~~~~g~~~G~~~~~~-~~~~~~-~~---~~~~----------- 268 (375)
T 2eh6_A 215 QTGIGRTGEFY------AYQHFNL-K-PDVIALA--KGLGGGVPIGAILARE-EVAQSF-TP---GSHG----------- 268 (375)
T ss_dssp TTTTTTTSSSS------GGGGGTC-C-CSEEEEC--GGGGTTSCCEEEEEEH-HHHTTC-CT---TSCC-----------
T ss_pred ccCCCCCCcch------hhhhcCC-C-CCEEEEc--ccccCCCCeEEEEEcH-HHHhhh-cC---CCCC-----------
Confidence 66422111101 0111111 2 7888888 8888888899999876 333321 10 0000
Q ss_pred CCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchh
Q psy1785 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQA 564 (629)
Q Consensus 485 ~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~ 564 (629)
..+ ++ ..+..+.++..+.. +.+..++..++++++.+.|++.+.. .+. +..+.+.+.+..+ .
T Consensus 269 ~~~---~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~L~~~~~~-~~~--~~g~~~~~~~~~~-------~- 329 (375)
T 2eh6_A 269 STF---GG---NPLACRAGTVVVDE--VEKLLPHVREVGNYFKEKLKELGKG-KVK--GRGLMLGLELERE-------C- 329 (375)
T ss_dssp CSS---TT---CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSS-EEE--EETTEEEEECSSC-------C-
T ss_pred CCC---CC---CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcC-Cce--EEEEEEEEEEcCc-------H-
Confidence 000 11 22222222222211 1166778888999999999987542 222 3334455554211 0
Q ss_pred hHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 565 DFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 565 ~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
.++.+.|.++|... .. . + .+++|++++ ..++++|++++++.|+++
T Consensus 330 ----------~~~~~~l~~~gi~~-~~--~-~-~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 330 ----------KDYVLKALEKGLLI-NC--T-A-GKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp ----------HHHHHHHHHTTEEC-EE--E-T-TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHCCCEE-ec--C-C-CCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 24667777788543 21 1 2 358999995 789999999999999875
No 154
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.51 E-value=2.8e-13 Score=154.56 Aligned_cols=305 Identities=13% Similarity=0.116 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCc-hhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGG-SMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDN 338 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~Gg-T~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~ 338 (629)
.++.+.+++++|.+. .+++.+| |.+|..++.+.. .|...|++...+|.|+..++...|. .
T Consensus 198 ~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al~--------------~pGD~VLv~r~~H~S~~~~l~lsGa---~ 258 (715)
T 3n75_A 198 KEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYSA--------------PAGSTILIDRNCHKSLTHLMMMSDV---T 258 (715)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHC--------------CTTCEEEEESSCCHHHHHHHHHSCC---E
T ss_pred HHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHhC--------------CCCCEEEECCCccHHHHHHHHHcCC---E
Confidence 566677999999863 4555545 678766665432 2566788999999999999999998 8
Q ss_pred EEEEecCCC-----CCC-----CHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecC
Q psy1785 339 VYLIKTDAR-----GRM-----LPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWN 406 (629)
Q Consensus 339 v~~V~~d~~-----g~~-----d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~g 406 (629)
++.++.+.+ +.+ |+++|+++|.+..+ ...|.+|+++.+ |.+|.+-|+++|+++|+.+ .++| ||+
T Consensus 259 pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~ 334 (715)
T 3n75_A 259 PIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWV 334 (715)
T ss_dssp EEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTC
T ss_pred EEEEeccccccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccc
Confidence 888887533 234 89999999976311 112446777777 8999999999999999865 3677 898
Q ss_pred cccccccccccccccccccc-ccCCc--ceEE---EeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 407 PHKLLTAPQQCSVFLTRRNY-VIEVV--ADSV---TWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 407 g~~l~~~~~~~~~~l~~~~~-~i~~g--aDsv---~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
++..+.+ ..++. .+..| +|.+ +.++||+|+++.++|++++++. .....+.....++
T Consensus 335 ~~~~f~~--------~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~--------- 396 (715)
T 3n75_A 335 PYTNFSP--------IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMH--------- 396 (715)
T ss_dssp TTGGGSG--------GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHT---------
T ss_pred cccccCC--------ccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhh---------
Confidence 8764443 12111 12222 6765 9999999999999999999875 1111111111111
Q ss_pred ccCCCCccCCCCCCc--chHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCC------cEEEccCCCceEE-EEE
Q psy1785 481 KYDSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG------FKLVLDEPECTNI-SFW 551 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~--~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g------~~l~~~~p~~~~v-~F~ 551 (629)
+.+... ...++-.+++.+-...-+++.++.++++++|++.|+++++ |+++. +...... ||.
T Consensus 397 ---------~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 466 (715)
T 3n75_A 397 ---------TTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQ-PDHIDTTECWP 466 (715)
T ss_dssp ---------SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESS-CSCCCSCSCEE
T ss_pred ---------cCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccC-cccccchhhhc
Confidence 112222 2223333444444322355789999999999999998864 67664 2111000 111
Q ss_pred -------------------eeCC-------C--CCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEE
Q psy1785 552 -------------------YIPP-------S--LRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRL 603 (629)
Q Consensus 552 -------------------~~p~-------~--~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~ 603 (629)
+.|. + ..|.-...-+. ...+.+.|.+.|.. +..+. .+.+-+
T Consensus 467 ~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~------g~~~~~~L~~~~I~-~E~~d----~~~vl~ 535 (715)
T 3n75_A 467 LRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIP------ASIVAKYLDEHGIV-VEKTG----PYNLLF 535 (715)
T ss_dssp CCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCC------HHHHHHHHHHTTCC-CSEEE----TTEEEE
T ss_pred cCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCc------HHHHHHHHHHCCCE-EEecC----CCcEEE
Confidence 1110 1 11100000000 12455667667642 22222 234666
Q ss_pred eecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 604 VLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 604 ~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.++ +..|++++++|+++|.++.+
T Consensus 536 l~s-~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 536 LFS-IGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred EeC-CCCCHHHHHHHHHHHHHHHH
Confidence 664 99999999999999987643
No 155
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.50 E-value=1.4e-12 Score=142.22 Aligned_cols=317 Identities=14% Similarity=0.113 Sum_probs=181.4
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcc-hHHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAH-YSIKK 327 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H-~Si~k 327 (629)
|...+.... +.+.+++++|.+ ..++++|||+++..++.+... |.. + +...+| .++..
T Consensus 71 y~~~~~~~~----l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~~--------------~gd-i-~~~~~~~~~~~~ 128 (456)
T 2ez2_A 71 YAGSENFYH----LERTVQELFGFK--HIVPTHQGRGAENLLSQLAIK--------------PGQ-Y-VAGNMYFTTTRY 128 (456)
T ss_dssp SSSCHHHHH----HHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-E-EEESSCCHHHHH
T ss_pred cccChhHHH----HHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhCC--------------CCC-E-eccccccchhHH
Confidence 334455444 445577778764 689999999999888866521 222 3 344566 77788
Q ss_pred HHHHcCCCCCCEEEEecCC----------CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCC-ccccccC---HHHHHHH
Q psy1785 328 LAAFEGLGSDNVYLIKTDA----------RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTT-VLGAFDP---IPAIADI 393 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d~----------~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt-~~G~idp---l~ei~~i 393 (629)
++...|. +++.+++++ ++.+|+++|+++|.+... ....+|+.+...+ .+|.+-| +++|+++
T Consensus 129 ~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~l 203 (456)
T 2ez2_A 129 HQEKNGA---VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVREL 203 (456)
T ss_dssp HHHHTTC---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHH
T ss_pred HHHHcCC---EEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHHHHHHH
Confidence 8899998 899998873 268999999999976321 1234565554444 6787665 9999999
Q ss_pred HHHcCCeEEE--ecCcc---------ccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhh
Q psy1785 394 CAEYDMADSV--TWNPH---------KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTE 462 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~---------~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~ 462 (629)
|++||+++++ +++.+ ..... .....+. ... ... .|.+++++||+++.| ..|+++.+++++...
T Consensus 204 a~~~~i~li~De~~~~g~~~~~~~~~~~~~g-~~~~~~~--~~~-~~~-~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~ 277 (456)
T 2ez2_A 204 TEAHGIKVFYDATRCVENAYFIKEQEQGFEN-KSIAEIV--HEM-FSY-ADGCTMSGKKDCLVN-IGGFLCMNDDEMFSS 277 (456)
T ss_dssp HHHTTCCEEEECTTHHHHHHHHHHHSTTCTT-SCHHHHH--HHH-HTT-CSEEEEETTTTTCCS-SCEEEEESCHHHHHH
T ss_pred HHHcCCeEEEEccccccccccccccccccCC-cchhhhh--hhh-ccc-CCEEEEeCcccCCCC-ceeEEEECCHHHHHH
Confidence 9999999999 55432 10110 0000000 000 023 788888899998855 467777655555443
Q ss_pred hhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhH-HHHHHHHHHHHHHHHHHHhcCCCcEEEcc
Q psy1785 463 CHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGL-EAHIDKSFDNAKYFTDKIRHRPGFKLVLD 541 (629)
Q Consensus 463 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~-~~~~~~~~~la~~l~~~L~~~~g~~l~~~ 541 (629)
.......+. . . . ...+.....+.. +++... +.+ ++..++..++++++.+.|++. |++++.
T Consensus 278 ~~~~~~~~~-~-~---------~---~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 338 (456)
T 2ez2_A 278 AKELVVVYE-G-M---------P---SYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVE- 338 (456)
T ss_dssp HHHHHHHHT-C-C---------T---TTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS-
T ss_pred HHHHHhhcc-C-c---------c---cccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCcccc-
Confidence 211110000 0 0 0 001111111111 011111 222 456677788899999999885 887654
Q ss_pred CCCceEEEEEee--CCCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeee-c-----------CCccceEEEeec
Q psy1785 542 EPECTNISFWYI--PPSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQP-I-----------HALPNFFRLVLQ 606 (629)
Q Consensus 542 ~p~~~~v~F~~~--p~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~-~-----------~~~~~~lR~~~~ 606 (629)
+.....+.+.+. +++.. ..++. ...+.++| .+.|...+.... . ....+++|+++.
T Consensus 339 p~~~~~~~~~~~~~~~~~~----~~~~~------~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 339 PVGGHAVFLDARRFCEHLT----QDEFP------AQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp SCCSSEEEEEHHHHTTTSC----GGGCH------HHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred CCCceEEEEEhHHhcCCCC----hhhcc------HHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 323333333332 11111 11110 23445666 566765333111 0 011258999996
Q ss_pred CCCCCHHHHHHHHHHHHHHhh
Q psy1785 607 NSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 607 n~~~t~edid~l~~~i~~l~~ 627 (629)
...++++||+++++.|+++.+
T Consensus 409 ~~~~t~e~i~~~~~~l~~~l~ 429 (456)
T 2ez2_A 409 RRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 333899999999999988754
No 156
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.50 E-value=5.3e-12 Score=134.60 Aligned_cols=292 Identities=12% Similarity=0.070 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcc-hHHHHHHHHcCCC---
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAH-YSIKKLAAFEGLG--- 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H-~Si~kaa~~lGlg--- 335 (629)
.++.+++++++| ....++++|||+++..++..++.... ...|... .+..|++...+| .....+....+-.
T Consensus 81 ~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~---~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 3ruy_A 81 GPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAY---DVKKVEA-NRAEIIVCEDNFHGRTMGAVSMSSNEEYK 154 (392)
T ss_dssp HHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHH---HTSCCCT-TCCEEEEETTCCCCSSHHHHHTCSCTTTT
T ss_pred HHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhh---hccCCCC-CCcEEEEEcCCcCCCCHhhhhccCChhhc
Confidence 556677888888 34789999999999999987765311 1223211 122444444444 4433333332210
Q ss_pred ------CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE--
Q psy1785 336 ------SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV-- 403 (629)
Q Consensus 336 ------~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV-- 403 (629)
..++..++.+ |+++|+++|.. .+.+|+.+...+.+|.+.| +++|+++|++||+++++
T Consensus 155 ~~~~~~~~~~~~~~~~-----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De 223 (392)
T 3ruy_A 155 RGFGPMLPGIIVIPYG-----DLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADE 223 (392)
T ss_dssp TTCCSCCSSEEEECTT-----CHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEEC
T ss_pred cccCCCCCCCeeeCcc-----cHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 1135555543 79999988862 4667888788899999998 99999999999999999
Q ss_pred ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++.+......+..+ .. .....|.++++ |.+++. +..|++++++ +....... .. .
T Consensus 224 ~~~~~~~~g~~~~~----~~----~~~~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~~~~~----~~-~--------- 278 (392)
T 3ruy_A 224 IQTGLGRTGKVFAC----DW----DNVTPDMYILG--KALGGGVFPISCAAANR-DILGVFEP----GS-H--------- 278 (392)
T ss_dssp TTTTTTTTSSSSGG----GG----GTCCCSEEEEC--GGGGTTTSCCEEEEECH-HHHTTCCT----TS-S---------
T ss_pred chhCCCccccchhh----hc----cCCCCCEEEEc--hhhhCChhhhEEEEECH-HHHhhhcc----CC-c---------
Confidence 66543221110000 11 11136888886 987653 4578888765 33322100 00 0
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC--CCcEEEccCCCceEEEEEeeCCCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR--PGFKLVLDEPECTNISFWYIPPSLRGK 560 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~--~g~~l~~~~p~~~~v~F~~~p~~~~~~ 560 (629)
... ..........+..+++.+.. ++..++..++++++.+.|++. +.+.... +..+.+.+.+.. ..
T Consensus 279 -~~~---~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~---~~- 345 (392)
T 3ruy_A 279 -GST---FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR--GKGLFIGIELNE---PA- 345 (392)
T ss_dssp -CCS---STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--EETTEEEEEESS---CS-
T ss_pred -CCC---CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--eeeeEEEEEEcc---hH-
Confidence 000 01112223333334443322 556777888999999999987 3344332 444555555422 10
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.++.+.|.++|.. +. + +..+++|++++ ..+|++|++.+++.|+++.
T Consensus 346 --------------~~l~~~l~~~gi~-v~--~--~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 346 --------------RPYCEQLKAAGLL-CK--E--THENVIRIAPP-LVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp --------------HHHHHHHHTTTEE-CC--C--BTTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHCCcE-Ee--c--CCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 2567788888854 22 1 12368999985 8899999999999998864
No 157
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.50 E-value=1.7e-12 Score=138.87 Aligned_cols=296 Identities=13% Similarity=0.097 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.+++++++|. ...++++|||+++..++.+++..... ...| +..+|+.....|.+...++...|..
T Consensus 83 ~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~~~--~~~~----~~~vi~~~~~yh~~~~~~~~~~g~~~~ 154 (397)
T 2ord_A 83 PQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKK--KSEK----KYRILSAHNSFHGRTLGSLTATGQPKY 154 (397)
T ss_dssp HHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHHHH--HCTT----CCEEEEEBTCCCCSSHHHHHHSBCHHH
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhc--CCCC----CceEEEEcCCcCCCchhhhhccCChhh
Confidence 345566778888873 47899999999999888876542100 0011 2346667778888777777777651
Q ss_pred -------CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccc----ccCHHHHHHHHHHcCCeEEE-
Q psy1785 336 -------SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGA----FDPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 336 -------~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~----idpl~ei~~i~~~~~~~lhV- 403 (629)
...++.+|.+ |+++|++++.+ .+.+|+.+...+.+|. .+++++|+++|+++|+++++
T Consensus 155 ~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D 223 (397)
T 2ord_A 155 QKPFEPLVPGFEYFEFN-----NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD 223 (397)
T ss_dssp HGGGCSCCTTEEEECTT-----CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccCCCCCCeeEecCC-----CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 0127777753 89999888753 3667777778888888 48999999999999999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++.+......+. ....+++ ..|.+++ +|+++.++.+|.++++++ .. .+.. . ..
T Consensus 224 e~~~~~~~~g~~~------~~~~~~~--~~d~~s~--sK~~~~G~r~G~~~~~~~-~~--~l~~--~----~~------- 277 (397)
T 2ord_A 224 EVQCGMGRTGKLF------AYQKYGV--VPDVLTT--AKGLGGGVPIGAVIVNER-AN--VLEP--G----DH------- 277 (397)
T ss_dssp CTTTTTTTTSSSS------HHHHHTC--CCSEEEE--CGGGGTTSCCEEEEECST-TC--CCCT--T----SS-------
T ss_pred ecccCCccCccch------hhhhhCC--CCCeeee--ccccCCCcCeEEEEEchH-hc--ccCC--C----Cc-------
Confidence 676432111110 0011111 2687766 799997777999988764 22 1110 0 00
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CCcEEEccCCCceEEEEEeeCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PGFKLVLDEPECTNISFWYIPPSLR 558 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g~~l~~~~p~~~~v~F~~~p~~~~ 558 (629)
.. +. +........+..+++.+.. ++..++..++++++.+.|++. +.+... ++..+.+.|.+... .
T Consensus 278 -~~--~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~~~~~~~~-~- 346 (397)
T 2ord_A 278 -GT--TF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV--RGMGLMIGIQFREE-V- 346 (397)
T ss_dssp -CC--SS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE--EEETTEEEEEECTT-S-
T ss_pred -CC--CC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE--EEEeEEEEEEECCh-H-
Confidence 00 00 1112223334445555443 345666777888888888764 222212 23344556655321 0
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
+ ..++.++|.++|.++.. . + .+++|+++. ..++++|++++++.|+++.+++
T Consensus 347 ---~-----------~~~l~~~l~~~gi~v~~-~---~-~~~iRis~~-~~~~~e~i~~~~~~l~~~l~~~ 397 (397)
T 2ord_A 347 ---S-----------NREVATKCFENKLLVVP-A---G-NNTIRFLPP-LTVEYGEIDLAVETLKKVLQGI 397 (397)
T ss_dssp ---C-----------HHHHHHHHHHTTEECEE-E---T-TTEEEECCC-TTCCHHHHHHHHHHHHHHHHTC
T ss_pred ---H-----------HHHHHHHHHHCCCEEcc-C---C-CCEEEEECC-cCCCHHHHHHHHHHHHHHHhhC
Confidence 0 13567778888854322 1 2 358999985 7899999999999999887653
No 158
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.49 E-value=6.6e-12 Score=135.78 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhCCCC---------CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 256 SLMEEHVLAQMRTIVGFQG---------GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~~---------~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
..+-+.+.+++.+..|.+. .+.++|+|+++++..++.+... |...|++..-+|..+.
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~ 146 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--------------PGDNVLLDEPAYSGTL 146 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHH
Confidence 4555677777888888864 3789999999998777665421 3445777788888999
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh------CCCCcEEEEE-eeCCCccccccCHH---HHHHHHHH
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLA------EGAVPFMVSA-TSGTTVLGAFDPIP---AIADICAE 396 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~------~g~~~~~Vva-t~Gtt~~G~idpl~---ei~~i~~~ 396 (629)
..++..|. +++.||.+++| +|+++|++++.+... .+..+.+|++ ....+.+|.+-|.+ +|.++|++
T Consensus 147 ~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 147 QSLHPLGC---NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK 222 (425)
T ss_dssp HHHGGGTC---EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH
Confidence 99999998 99999997765 999999998863110 0122444544 46678889887755 89999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccC
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~ 474 (629)
|++++++ +++...+-..+. . ....+... +.+.+..+++|+++.-.-+|.++..+ .+..........+
T Consensus 223 ~~~~li~De~~~~~~~~g~~~-~----~~~~~~~~-~~~i~~~s~SK~~~~GlRiG~~~~~~-~l~~~l~~~~~~~---- 291 (425)
T 2r2n_A 223 YDFLIIEDDPYYFLQFNKFRV-P----TFLSMDVD-GRVIRADSFSKIISSGLRIGFLTGPK-PLIERVILHIQVS---- 291 (425)
T ss_dssp TTCEEEEECTTGGGBSSSSCC-C----CTGGGCTT-SCEEEEEESTTTTCSTTCCEEEEEEH-HHHHHHHHHHHTT----
T ss_pred cCCEEEEECCcccccCCCCCC-C----CccccCCC-CCEEEEccchhhccCccceEEEecCH-HHHHHHHHHHHHh----
Confidence 9999999 665432211100 0 00111111 25688889999997223478888865 3433221100000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhh----HHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEE-
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDG----LEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNI- 548 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G----~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v- 548 (629)
+ .+........+..+++..+..+ +++..++..+..+++.+.|++ .|++..+. .|..+.+
T Consensus 292 -------------~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~p~~g~~~ 356 (425)
T 2r2n_A 292 -------------T-LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWH-VPAAGMFL 356 (425)
T ss_dssp -------------T-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEC-CCSBSSEE
T ss_pred -------------c-CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEe-CCCceEEE
Confidence 0 0111112222223333333233 344455666778888888887 67874333 4554443
Q ss_pred EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC----CccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 549 SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH----ALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 549 ~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~----~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.+++ |.... . . ..+.+.|.++|..+....... ...+++|++++ . .++++|+.+++.|++
T Consensus 357 ~~~~-~~~~~----~----~------~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~-~-~~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 357 WIKV-KGIND----V----K------ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS-S-ASPEQMDVAFQVLAQ 419 (425)
T ss_dssp EEEE-TTCSC----C----H------HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS-S-CCHHHHHHHHHHHHH
T ss_pred EEEe-CCCCC----H----H------HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC-C-CCHHHHHHHHHHHHH
Confidence 3343 32111 0 0 124566778886554332221 11358999996 3 599999999999988
Q ss_pred Hhhc
Q psy1785 625 LGHD 628 (629)
Q Consensus 625 l~~~ 628 (629)
+.++
T Consensus 420 ~l~~ 423 (425)
T 2r2n_A 420 LIKE 423 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 159
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.49 E-value=4.1e-12 Score=137.32 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH----HcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA----FEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~----~lGlg 335 (629)
.++.++++++.|.+ ..+++++|++++..++.+.. .|...|+++..+|.+...... ..|+
T Consensus 84 ~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~--------------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~- 146 (414)
T 3ndn_A 84 SVFEERLRLIEGAP--AAFATASGMAAVFTSLGALL--------------GAGDRLVAARSLFGSCFVVCSEILPRWGV- 146 (414)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC--------------CTTCEEEEESCCCHHHHHHHHTHHHHTTC-
T ss_pred HHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh--------------CCCCEEEEcCCccchHHHHHHHHHHHcCc-
Confidence 44556688888864 57899999998876665431 134457777888887666554 4788
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTA 413 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~ 413 (629)
+++.||.+ |+++|+++|.+ .+.+|.....++.+|.+.|+++|+++|+++|+++++ +|+...+..+
T Consensus 147 --~~~~v~~~-----d~~~l~~ai~~------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~ 213 (414)
T 3ndn_A 147 --QTVFVDGD-----DLSQWERALSV------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQG 213 (414)
T ss_dssp --EEEEECTT-----CHHHHHHHTSS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCC
T ss_pred --EEEEeCCC-----CHHHHHHhcCC------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 88888875 88999888753 345677788999999999999999999999999999 6664332221
Q ss_pred cccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 414 PQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 414 ~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
++.|+|.++.+++|+++.+.. +|+++.++. .+...+.. +.. ..
T Consensus 214 --------------~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~---~~~-----------------~~ 258 (414)
T 3ndn_A 214 --------------FPLGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQK---LMR-----------------HT 258 (414)
T ss_dssp --------------GGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHH---HHH-----------------HH
T ss_pred --------------hhcCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHH---HHH-----------------Hc
Confidence 234699999999999986542 677777654 33211110 000 00
Q ss_pred CCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 492 GRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
+.....+..|+.++ +.+.+..++++..++++++.+.|++.|+++.+.
T Consensus 259 g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 305 (414)
T 3ndn_A 259 GPAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVR 305 (414)
T ss_dssp CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEE
Confidence 11234566777666 456678888999999999999999999886554
No 160
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.7e-13 Score=145.90 Aligned_cols=338 Identities=11% Similarity=0.043 Sum_probs=202.1
Q ss_pred HHHHHHHhcCC-CccccccChhHHHHHHHHHHHHHHHhCCCC--CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCC
Q psy1785 234 VGQWLADALNP-SVYTYEVSPVFSLMEEHVLAQMRTIVGFQG--GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASC 310 (629)
Q Consensus 234 ~~~~lt~~~n~-~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~--~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~ 310 (629)
+.+.+..++.. ....|........+.+.+.+++.+.+|.+. .+.++|+|+++++..++.+...
T Consensus 75 v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~-------------- 140 (447)
T 3b46_A 75 AIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-------------- 140 (447)
T ss_dssp HHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcC--------------
Confidence 34445555543 222343334456777787888877777642 5789999999998888776521
Q ss_pred CCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCC------------CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCC
Q psy1785 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDAR------------GRMLPESLRGEIQRTLAEGAVPFMVSATSGT 378 (629)
Q Consensus 311 p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~------------g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gt 378 (629)
|...|++..-+|.++..++...|. +++.||.+++ +.+|+++|+++|.. .+.+|+.+...
T Consensus 141 ~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~ 211 (447)
T 3b46_A 141 AGDEVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS------KTKAVIINTPH 211 (447)
T ss_dssp TTCEEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT------TEEEEEEESSC
T ss_pred CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccccccCcccCHHHHHHhhcc------CCeEEEEeCCC
Confidence 334566677788888899999998 8999998653 57999999988852 35567777888
Q ss_pred Cccccc---cCHHHHHHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEE
Q psy1785 379 TVLGAF---DPIPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVF 452 (629)
Q Consensus 379 t~~G~i---dpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~l 452 (629)
+.+|.+ +++++|+++|++||+++++ ++....+-.+.. + +..... +.. +.|.++.++||+++.| .-+|++
T Consensus 212 nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~--~-~~~~~~-~~~-~~~i~i~S~sK~~~~~G~riG~~ 286 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFT--R-IATLSP-EIG-QLTLTVGSAGKSFAATGWRIGWV 286 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC--C-GGGSCH-HHH-TTEEEEEEHHHHTTCTTSCCEEE
T ss_pred CCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCc--C-HHHcCC-CCC-CcEEEEecCchhcCCcchhhEEE
Confidence 889988 5799999999999999999 666533211100 0 001100 011 4799999999999743 348888
Q ss_pred EEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHh
Q psy1785 453 LTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIR 531 (629)
Q Consensus 453 l~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~ 531 (629)
+.+++++........ .+. + -++.......+..+++... .+.+++..++..++++++.+.|+
T Consensus 287 ~~~~~~l~~~l~~~~-~~~----------------~-~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 348 (447)
T 3b46_A 287 LSLNAELLSYAAKAH-TRI----------------C-FASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFD 348 (447)
T ss_dssp ECSCHHHHHHHHHHH-HHH----------------T-SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHH-hhc----------------c-CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 884444443321100 000 0 0111111222223333221 34467778888889999999999
Q ss_pred cCCCcEEEccCCCceE-EEEEeeCCCCC-CCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCC------ccceEE
Q psy1785 532 HRPGFKLVLDEPECTN-ISFWYIPPSLR-GKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHA------LPNFFR 602 (629)
Q Consensus 532 ~~~g~~l~~~~p~~~~-v~F~~~p~~~~-~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~------~~~~lR 602 (629)
+. |+++.. |..+. +.+.+...... +........... -..++.++|. +.|.++........ ..+++|
T Consensus 349 ~~-g~~~~~--~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iR 423 (447)
T 3b46_A 349 EL-GLPYTA--PEGTYFVLVDFSKVKIPEDYPYPEEILNKG--KDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLR 423 (447)
T ss_dssp HH-TCCEEC--CSBSSEEEEECTTCCCCTTCCCCGGGSSSC--HHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEE
T ss_pred HC-CCeecC--CCeeEEEEEecccccCccccccccccccCC--CHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEE
Confidence 87 888764 44333 33443211000 000000000000 0135666676 46765433222211 136899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q psy1785 603 LVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 603 ~~~~n~~~t~edid~l~~~i~~l 625 (629)
++++ .++++|+..++.|+++
T Consensus 424 ls~~---~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 424 FAVC---KDDAYLENAVERLKLL 443 (447)
T ss_dssp EECC---SCHHHHHHHHHHGGGG
T ss_pred EEEe---CCHHHHHHHHHHHHHH
Confidence 9996 2799999999988765
No 161
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.48 E-value=1.5e-12 Score=139.59 Aligned_cols=282 Identities=15% Similarity=0.139 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lGlg 335 (629)
.++.+.+++++|.+ ..+++++||+++..++. .. .|...|+++...|.+.... ++..|+
T Consensus 58 ~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~--------------~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~- 119 (393)
T 1n8p_A 58 ENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL--------------PQGSHAVSIGDVYGGTHRYFTKVANAHGV- 119 (393)
T ss_dssp HHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS--------------CSSCEEEEESSCCHHHHHHHHHTSTTTCS-
T ss_pred HHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc--------------CCCCEEEEeCCCchHHHHHHHHHHHHcCc-
Confidence 55667788999876 56777777998887765 21 1333566666777755543 344566
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc----CCeEEE--ecCccc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY----DMADSV--TWNPHK 409 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~----~~~lhV--A~gg~~ 409 (629)
+++.+|.+ | ++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++ |+++++ +++...
T Consensus 120 --~v~~v~~~-----d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~ 185 (393)
T 1n8p_A 120 --ETSFTNDL-----L-NDLPQLIKE------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp --CCEEESSH-----H-HHHHHHSCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred --EEEEeCCC-----h-HHHHHhccc------CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence 88888875 6 777776642 366788888999999999999999999999 999999 666554
Q ss_pred cccccccccccccccccccCCcceEEEeCCCCCCCCCC-cc-EEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCc
Q psy1785 410 LLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQ-QC-SVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDK 487 (629)
Q Consensus 410 l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~-~~-g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~ 487 (629)
.. .+ .+.|+|.++.++||+++.|. -. |+++++++.++...... .+.
T Consensus 186 ~~-~~-------------~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~-----~~~------------- 233 (393)
T 1n8p_A 186 IS-NP-------------LNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL-----QNA------------- 233 (393)
T ss_dssp HC-CG-------------GGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-----HHH-------------
T ss_pred cC-CH-------------HHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH-----HHh-------------
Confidence 32 20 12259999999999998543 14 77777654444432110 000
Q ss_pred cCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCC-cEEE-cc----CC------------C-ceEE
Q psy1785 488 HIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG-FKLV-LD----EP------------E-CTNI 548 (629)
Q Consensus 488 ~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g-~~l~-~~----~p------------~-~~~v 548 (629)
.+.....+..|..++.+ +.+..+.++..++++++.+.|++.+. ++-+ .+ .| . .+++
T Consensus 234 ---~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~ 308 (393)
T 1n8p_A 234 ---IGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMI 308 (393)
T ss_dssp ---HCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEE
T ss_pred ---cCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEE
Confidence 01112345555554443 34667778888889999999988866 5433 21 01 2 4577
Q ss_pred EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHh------cCcE---EEee-eecC-----------Cc-cceEEEeec
Q psy1785 549 SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMK------SGSM---MITY-QPIH-----------AL-PNFFRLVLQ 606 (629)
Q Consensus 549 ~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~------~G~~---~i~~-~~~~-----------~~-~~~lR~~~~ 606 (629)
+|.+.+. ..+ ...+.+.+.. .|.. .... .+.. |. .+.+|++++
T Consensus 309 ~~~l~~~-------~~~--------~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g 373 (393)
T 1n8p_A 309 SFRIKGG-------AEA--------ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG 373 (393)
T ss_dssp EEEESSC-------HHH--------HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC
T ss_pred EEEeCCc-------HHH--------HHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc
Confidence 7876421 001 1123333322 2211 0100 0000 11 358999997
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy1785 607 NSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 607 n~~~t~edid~l~~~i~~l~ 626 (629)
..+++++|+.+.++|+++.
T Consensus 374 -~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 374 -IEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp -SSCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 162
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.47 E-value=5.3e-12 Score=136.01 Aligned_cols=311 Identities=14% Similarity=0.101 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHh-CCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC-
Q psy1785 259 EEHVLAQMRTIV-GFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG- 335 (629)
Q Consensus 259 E~~~~~~l~~l~-G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg- 335 (629)
..++.+.+++++ | +. ...++++||++++..++..++... .+..+++.+...|.+...+....|..
T Consensus 86 ~~~l~~~la~~~~~-~~~~~v~~~~g~~~a~~~~~~~a~~~~-----------~~~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 86 YLELCEIMNQKVPG-DFAKKTLLVTTGSEAVENAVKIARAAT-----------KRSGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp HHHHHHHHHHHSSC-SSCEEEEEESSHHHHHHHHHHHHHHHH-----------TCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred HHHHHHHHHHhCCc-ccccEEEEeCchHHHHHHHHHHHHHhh-----------CCCeEEEECCCcCCCchHhhhhcCCcc
Confidence 355666788888 5 33 578999999999999988665421 13456677778887777777776641
Q ss_pred ---------CCCEEEEecCC-----CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHc
Q psy1785 336 ---------SDNVYLIKTDA-----RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEY 397 (629)
Q Consensus 336 ---------~~~v~~V~~d~-----~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~ 397 (629)
...++.+|.+. ++.+|+++|+++|.+.. .+..+.+|+++...+.+|.+.| +++|.++|++|
T Consensus 154 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~ 232 (426)
T 1sff_A 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH 232 (426)
T ss_dssp TTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 01377888763 23579999999886421 1123455656443344897777 99999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ ++.+........ .... ....+|.+++ +|+++..+.+|++++++ ++.... .. ..+
T Consensus 233 ~~~li~De~~~~~~~~g~~~------~~~~--~~~~~di~s~--sK~~~~GlriG~~~~~~-~~~~~l-~~-~~~----- 294 (426)
T 1sff_A 233 GIMLIADEVQSGAGRTGTLF------AMEQ--MGVAPDLTTF--AKSIAGGFPLAGVTGRA-EVMDAV-AP-GGL----- 294 (426)
T ss_dssp TCEEEEECTTTTTTTTSSSS------GGGG--TTSCCSEEEE--CGGGGTSSCCEEEEEEH-HHHTTS-CT-TSB-----
T ss_pred CCEEEEechhhccCcccchh------hhhh--cCCCCCEEEE--cccccCCCceEEEEEcH-HHHhhh-cc-CCc-----
Confidence 999999 776532111100 0011 1112677655 59998544479998876 343321 10 000
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCCcEEEccCCCceEEEEE
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPGFKLVLDEPECTNISFW 551 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g~~l~~~~p~~~~v~F~ 551 (629)
... .+........+..+++.+..+. ..++..+++++++++|++ .+.+..+ .+..+.+.+.
T Consensus 295 --------~~~---~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~~~ 358 (426)
T 1sff_A 295 --------GGT---YAGNPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDV--RGLGAMIAIE 358 (426)
T ss_dssp --------CCS---SSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEE--EEETTEEEEE
T ss_pred --------CcC---CCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEE--EEEEEEEEEE
Confidence 000 0111223334444455443333 455666677778777765 3333322 2344555666
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.......+ .. ...++.++|.++|.++..... ..+++|++++ ..++++||+.+++.|+++.++
T Consensus 359 ~~~~~~~~~~~--~~------~~~~l~~~l~~~gi~v~~~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 359 LFEDGDHNKPD--AK------LTAEIVARARDKGLILLSCGP---YYNVLRILVP-LTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp EBGGGCTTSBC--HH------HHHHHHHHHHHTTEECEEEST---TSCEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCccccCCC--hH------HHHHHHHHHHHCCcEEecCCC---CCCEEEEECC-ccCCHHHHHHHHHHHHHHHHH
Confidence 53210000000 00 123577788888865432221 1358999995 799999999999999887543
No 163
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.47 E-value=1.1e-11 Score=132.10 Aligned_cols=307 Identities=10% Similarity=0.022 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHhCCC---CC-CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH
Q psy1785 254 VFSLMEEHVLAQMRTIVGFQ---GG-DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~~---~~-~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa 329 (629)
....+.+.+.+++.+.+|++ .. +.++++|+++++..++.+.+.. |-. ..+..|++..-+|.++..++
T Consensus 67 g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~--------g~~-~~~d~vl~~~p~~~~~~~~~ 137 (396)
T 3jtx_A 67 GLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNP--------VSD-GIKPAIVSPNPFYQIYEGAT 137 (396)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC------------CCCCEEEEEESCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCC--------CCc-cCCCEEEEcCCCcHhHHHHH
Confidence 34667788888888888864 56 8999999999988777655321 100 00135667777888999999
Q ss_pred HHcCCCCCCEEEEecCCCC-CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHH---HHHHHHHcCCeEEE--
Q psy1785 330 AFEGLGSDNVYLIKTDARG-RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPA---IADICAEYDMADSV-- 403 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d~~g-~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~e---i~~i~~~~~~~lhV-- 403 (629)
...|. +++.+|.+++| .+|+++|++++.+ .+.+|+.+...+.+|.+-|.++ |+++|+++++++++
T Consensus 138 ~~~g~---~~~~v~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 208 (396)
T 3jtx_A 138 LLGGG---EIHFANCPAPSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDE 208 (396)
T ss_dssp HHTTC---EEEEEECCTTTCCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHcCC---EEEEeecCCCCCccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 99998 99999997665 6899999999875 3556777778889999876555 88899999999999
Q ss_pred ecCcccccc-cccccccccc-ccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCc
Q psy1785 404 TWNPHKLLT-APQQCSVFLT-RRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 404 A~gg~~l~~-~~~~~~~~l~-~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
+++....-. .+... +. ...++.+.+.+.++.+++|.++.| ..+|+++. ++.+........ .+.
T Consensus 209 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~-~~~--------- 274 (396)
T 3jtx_A 209 CYSEIYFDGNKPLGC---LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAELLKNFLLYR-TYH--------- 274 (396)
T ss_dssp TTTTCCSTTCCCCCH---HHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHHHHHHHHHHH-HHH---------
T ss_pred cccccccCCCCCchH---HhhhhhcccccCcEEEEeccccccCCcccceEEEEe-CHHHHHHHHHHH-hhc---------
Confidence 666533221 11000 00 000000124788899999976544 55787765 434443321100 000
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEE-EEEeeCCCCCC
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNI-SFWYIPPSLRG 559 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v-~F~~~p~~~~~ 559 (629)
+ .+........+..+++. .+.+++..++..++.+++.+.|++. +.+. .|..+.+ .+.+ +. .
T Consensus 275 -------~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~--~~~~~~~~~~~~-~~-~-- 336 (396)
T 3jtx_A 275 -------G-SAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV--FDVK--LPDASFYIWLKV-PD-G-- 336 (396)
T ss_dssp -------T-CCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT--SCCC--CCSSSSEEEEEC-TT-S--
T ss_pred -------c-cCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc--CCcc--CCCeeEEEEEEC-CC-C--
Confidence 0 01111122222233332 4567788888888999999999876 3333 3443333 3333 21 0
Q ss_pred CCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-------CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 560 KEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-------ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 560 ~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-------~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
+ ..++.++|. +.|..+....... ...+++|++++ . ++++|+.+++.|+++.
T Consensus 337 --~-----------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~-~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 337 --D-----------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV-A--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp --C-----------HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC-S--CHHHHHHHHHHHHHHC
T ss_pred --C-----------HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc-C--CHHHHHHHHHHHHHHh
Confidence 0 124566664 4586543322111 12368999986 3 8999999999998764
No 164
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.47 E-value=1.3e-11 Score=133.53 Aligned_cols=307 Identities=10% Similarity=-0.032 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC-----
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL----- 334 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl----- 334 (629)
.+..+.++++++.+....+|++|||+++..++..++... ...|-+ ..-+++.....|.+...++...|.
T Consensus 89 ~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~----~~~g~~--~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 162 (429)
T 1s0a_A 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW----QAKGEA--RQRFLTFRNGYHGDTFGAMSVCDPDNSMH 162 (429)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH----HHHTCC--CCEEEEETTCCCCSSHHHHTTSCTTTTTG
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHh----cccCCC--CCeEEEECCCCCCCchhhhhhcCCchhhc
Confidence 445567888888776789999999999999998776421 111210 134555566777765545443331
Q ss_pred -----CCCCEEEEecCC------CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHcC
Q psy1785 335 -----GSDNVYLIKTDA------RGRMLPESLRGEIQRTLAEGAVPFMVSATSG-TTVLGAFDP----IPAIADICAEYD 398 (629)
Q Consensus 335 -----g~~~v~~V~~d~------~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~G-tt~~G~idp----l~ei~~i~~~~~ 398 (629)
....+..++++. .+.+|+++|+++|.+. ...+.+|++... .+.+|.+-| +++|+++|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~ 239 (429)
T 1s0a_A 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp GGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred ccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 012467777652 2468999999998742 123445655554 567897776 999999999999
Q ss_pred CeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCC-CCccccC
Q psy1785 399 MADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSAS-ASYLFQK 474 (629)
Q Consensus 399 ~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~-~~yl~~~ 474 (629)
+++++ ++.+........ .....++ ..|.++++ |+++.+ +..|.++.++ ++........ ..+..
T Consensus 240 ~~li~De~~~~~g~~g~~~------~~~~~~~--~~d~~t~s--K~l~~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~-- 306 (429)
T 1s0a_A 240 ILLIADEIATGFGRTGKLF------ACEHAEI--APDILCLG--KALTGGTMTLSATLTTR-EVAETISNGEAGCFMH-- 306 (429)
T ss_dssp CEEEEECTTTTTTTTSSSS------GGGGGTC--CCSEEEEC--GGGGTSSSCCEEEEECH-HHHHHHHTSTTSSCSC--
T ss_pred CEEEEeehhhCCcccchHH------HhhhcCC--CCCEEEec--ccccCCCccceEEEeCH-HHHHHhhcCCCccccc--
Confidence 99999 665421111100 0011111 37888776 888877 7899998866 4443321100 00000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCceEEEEE
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECTNISFW 551 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~~v~F~ 551 (629)
.+. .+........+..+++.+..+ +..++..++.++|.+.|+++ |++..+. +..+.+.+.
T Consensus 307 ---------~~t---~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~--~~g~~~~~~ 369 (429)
T 1s0a_A 307 ---------GPT---FMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADVR--VLGAIGVVE 369 (429)
T ss_dssp ---------CCT---TTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEE--EETTEEEEE
T ss_pred ---------CCC---CCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEE--EeeEEEEEE
Confidence 000 011122233333444433333 34566677889999998875 5654332 233344454
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.. .. + ..++.+.|.++|.+ +.. . + +++|+++. ..+|++|++++++.|+++.++
T Consensus 370 ~~~-~~----~-----------~~~l~~~l~~~Gi~-v~~--~-~--~~iRis~~-~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 370 TTH-PV----N-----------MAALQKFFVEQGVW-IRP--F-G--KLIYLMPP-YIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ESS-CB----C-----------HHHHHHHHHHTTEE-CCC--B-T--TEEEECCC-TTCCHHHHHHHHHHHHHHTSS
T ss_pred ECC-cc----c-----------HHHHHHHHHHCCCE-Eec--c-C--CEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 421 10 0 12466778888854 322 1 2 58999985 889999999999999987653
No 165
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.47 E-value=2e-12 Score=139.87 Aligned_cols=305 Identities=9% Similarity=-0.001 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHh-CCCCCC---eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH
Q psy1785 255 FSLMEEHVLAQMRTIV-GFQGGD---GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA 330 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~-G~~~~~---g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~ 330 (629)
...+.+.+.+++.+.. +.+..+ .++|+|+++++..++.+... |...|++..-+|.++...+.
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~ 155 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--------------QDDTILLPEHNWGNYKLVFN 155 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhC--------------CCCEEEEcCCcCccHHHHHH
Confidence 4445555444443332 555556 89999999998877765421 33456777888889888888
Q ss_pred H-cCCCCCCEEEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH-----cCCe
Q psy1785 331 F-EGLGSDNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAE-----YDMA 400 (629)
Q Consensus 331 ~-lGlg~~~v~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~-----~~~~ 400 (629)
. .|. +++.+|.++ ++.+|+++|+++|.+ .+..+.+|+.+...+.+|.+-| +++|.++|++ +|++
T Consensus 156 ~~~g~---~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~ 229 (430)
T 2x5f_A 156 TRNGA---NLQTYPIFDKDGHYTTDSLVEALQS---YNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVI 229 (430)
T ss_dssp TTTCC---EEEEECCBCTTSCBCSHHHHHHHHH---CCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HhcCC---eEEEEeccCccCCcCHHHHHHHHHh---cCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEE
Confidence 8 888 899999876 468999999999874 2234566777788888999988 8899999999 9999
Q ss_pred EEE--ecCccccccccccccccc-cccccccCCcc---eEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCcc
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFL-TRRNYVIEVVA---DSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYL 471 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l-~~~~~~i~~ga---Dsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl 471 (629)
+++ +++....-..+. .+ +. ... +.. +. +.+..++||+++.| ..+|++++ +++.+............
T Consensus 230 li~De~~~~~~~~~~~~-~~-~~~~~~--~~~-~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~ 304 (430)
T 2x5f_A 230 AVVDDAYYGLFYEDVYT-QS-LFTALT--NLH-SNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLI 304 (430)
T ss_dssp EEEECTTTTCBCSSSCC-SC-HHHHHH--TTC-CTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHH
T ss_pred EEEehhcccccCCcccc-hH-HHHHHh--hcc-CCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhh
Confidence 999 666543211100 00 00 000 111 24 67788999999755 33788888 24344433211000000
Q ss_pred ccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC-----hhhHHHHHHHHHHHHHHHHHHHh----cCCCcEEEccC
Q psy1785 472 FQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG-----TDGLEAHIDKSFDNAKYFTDKIR----HRPGFKLVLDE 542 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G-----~~G~~~~~~~~~~la~~l~~~L~----~~~g~~l~~~~ 542 (629)
... +-....+..+.+...+. .+.+++..++..++.+++.+.|+ +. ++++..
T Consensus 305 ~~~-----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~-- 364 (430)
T 2x5f_A 305 RSN-----------------ISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYD-- 364 (430)
T ss_dssp HTT-----------------TSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECC--
T ss_pred hcc-----------------cCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeC--
Confidence 000 00112233333333332 12233366777788899999998 44 787653
Q ss_pred CCceE-EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHH
Q psy1785 543 PECTN-ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMK-SGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFID 620 (629)
Q Consensus 543 p~~~~-v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~ 620 (629)
|..+. +.+.+. +.. ..++.++|.+ +|..+... ..+++|++++ . +++++|+.+++
T Consensus 365 ~~~g~~~~~~~~--~~~---------------~~~~~~~l~~~~gi~v~~g-----~~~~iRis~~-~-~~~e~i~~~~~ 420 (430)
T 2x5f_A 365 FNSGYFMAIKVH--DVD---------------PEALRKHLIDKYSIGVIAL-----NATDIRIAFS-C-VEKDDIPHVFD 420 (430)
T ss_dssp CCBSSEEEEEES--SSC---------------HHHHHHHHHHHHCEECEEC-----SSSEEEEEGG-G-SCGGGHHHHHH
T ss_pred CCceEEEEeCCC--CCC---------------HHHHHHHHHHhCCEEEecC-----CCCeEEEEEe-c-CCHHHHHHHHH
Confidence 55444 444442 211 1256777877 78643221 2358999996 3 59999999999
Q ss_pred HHHHHhhc
Q psy1785 621 EIERLGHD 628 (629)
Q Consensus 621 ~i~~l~~~ 628 (629)
.|+++.++
T Consensus 421 ~l~~~l~~ 428 (430)
T 2x5f_A 421 SIAKAIDD 428 (430)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987654
No 166
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.46 E-value=4.5e-12 Score=133.00 Aligned_cols=279 Identities=9% Similarity=0.009 Sum_probs=182.6
Q ss_pred HHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEE
Q psy1785 261 HVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVY 340 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~ 340 (629)
++.+++++++|.+..+.++|+|+|+++..++.+.. | ..|++..-+|.++..++...|. +++
T Consensus 54 ~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~----------g------d~Vi~~~p~~~~~~~~~~~~g~---~~~ 114 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR----------G------SRSLIAIPSFAEYEDACRMYEH---EVC 114 (350)
T ss_dssp HHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT----------T------CEEEEEESCCHHHHHHHHHTTC---EEE
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC----------C------CEEEEeCCCcHHHHHHHHHcCC---eEE
Confidence 56778899999877789999999999877765432 2 2456677889999999999999 999
Q ss_pred EEec-CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcC-CeEEE--ecCcccccccccc
Q psy1785 341 LIKT-DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD-MADSV--TWNPHKLLTAPQQ 416 (629)
Q Consensus 341 ~V~~-d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~-~~lhV--A~gg~~l~~~~~~ 416 (629)
.+|. ++.+.+++ ..+.+|+.+...+.+|.+-|++++.++++.++ .++++ +|.....-.. .
T Consensus 115 ~v~~~~~~~~~~~--------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~-~- 178 (350)
T 3fkd_A 115 FYPSNEDIGEADF--------------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEV-I- 178 (350)
T ss_dssp EEETTSCGGGSCC--------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCC-C-
T ss_pred EEecCCccccCcc--------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcc-h-
Confidence 9999 76566665 12446677888999999999999999999886 67766 6654322111 0
Q ss_pred ccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCc
Q psy1785 417 CSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP 495 (629)
Q Consensus 417 ~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~ 495 (629)
. ...... .+.+.++.+++|+++.| ...|.+++ ++++.......... . ..
T Consensus 179 ~-----~~~~~~-~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~---------------------~--~~ 228 (350)
T 3fkd_A 179 R-----PADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTP---------------------W--AV 228 (350)
T ss_dssp C-----GGGGTT-CSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCT---------------------T--CS
T ss_pred h-----hHHhhc-CCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCC---------------------C--CC
Confidence 0 000011 12568889999999844 56788887 44444432211100 0 11
Q ss_pred chHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHH
Q psy1785 496 DVLKFWFMWKAKGTDG-LEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVA 574 (629)
Q Consensus 496 ~al~~w~~l~~~G~~G-~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~ 574 (629)
..+..+.+...+.... +.+.+++..++++++.+.|+++|++++. ++..+.+.+++... + .
T Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~--~---------------~ 289 (350)
T 3fkd_A 229 NALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH--PSGTTFFLLRLKKG--T---------------A 289 (350)
T ss_dssp CHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC--CCSSSEEEEEESSS--C---------------H
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC--CCCCcEEEEECCCC--C---------------H
Confidence 2333333333332222 3444455558899999999999999874 35555555665321 0 1
Q ss_pred HHHHHHHHh-cCcEEEeeeecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 575 PKIKERMMK-SGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 575 ~~i~~~l~~-~G~~~i~~~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.++.++|.+ .|..+.......+ ..+++|++++ +++|+|.++++|+++.+
T Consensus 290 ~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 290 AELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ----RPAQNQLFIKALETFLE 340 (350)
T ss_dssp HHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 356778888 7865433222211 1468999985 88999999999998864
No 167
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.46 E-value=5.4e-12 Score=137.86 Aligned_cols=322 Identities=16% Similarity=0.206 Sum_probs=173.3
Q ss_pred ccccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH
Q psy1785 248 TYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK 327 (629)
Q Consensus 248 ~~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k 327 (629)
.|...+... ++.+++++++|. ..+++|+|||+||..++.+++.... ...|.. .+.. |+++ ..|+....
T Consensus 69 ~y~~~~~~~----~l~~~la~~~~~--~~v~~t~~gt~A~~~al~~~~~~~~---~~~G~~-~~d~-Ii~~-~~h~~t~~ 136 (467)
T 2oqx_A 69 AYSGSRSYY----ALAESVKNIFGY--QYTIPTHQGRGAEQIYIPVLIKKRE---QEKGLD-RSKM-VAFS-NYFFDTTQ 136 (467)
T ss_dssp CSSSCHHHH----HHHHHHHHHHCC--SEEEEEC--CCSHHHHHHHHHHHHH---HHHCCC-TTTC-EEEE-SSCCHHHH
T ss_pred eeccCchhH----HHHHHHHHHhCc--CcEEEcCCcHHHHHHHHHHHhcccc---ccCCCC-ccce-EEec-ccccccch
Confidence 344455443 445567888876 4689999999999999998875311 112421 0022 4444 57865433
Q ss_pred H-HHHcCCCCCCEEEE------ecC----CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc-cc---ccCHHHHHH
Q psy1785 328 L-AAFEGLGSDNVYLI------KTD----ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL-GA---FDPIPAIAD 392 (629)
Q Consensus 328 a-a~~lGlg~~~v~~V------~~d----~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~-G~---idpl~ei~~ 392 (629)
+ ....|. .++.. +.+ .+|.+|+++|+++|.+.. ...+.+|+.....+.+ |. .+++++|++
T Consensus 137 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~ 211 (467)
T 2oqx_A 137 GHSQINGC---TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYS 211 (467)
T ss_dssp HHHHHTTC---EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHH
T ss_pred hhhhccCc---ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHH
Confidence 2 233333 33222 223 457899999999997531 0124456666555554 54 467899999
Q ss_pred HHHHcCCeEEE--ecCc-ccc-------ccccccccccccccccc---cCCcceEEEeCCCCCCCCCCccEEEEEecc--
Q psy1785 393 ICAEYDMADSV--TWNP-HKL-------LTAPQQCSVFLTRRNYV---IEVVADSVTWNPHKLLTAPQQCSVFLTRHQ-- 457 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg-~~l-------~~~~~~~~~~l~~~~~~---i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~-- 457 (629)
+|++||+|+|+ ++.. ... ..... ....++ .+. +|++++++||+++.|.| |+++.+++
T Consensus 212 la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~------~~~~~~~~~~~~-~d~~~~s~sK~~g~~~G-g~~~~~~~~~ 283 (467)
T 2oqx_A 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDW------TIEQITRETYKY-ADMLAMSAKKDAMVPMG-GLLCMKDDSF 283 (467)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS------CHHHHHHHHGGG-CSEEEEESSSTTCCSSC-EEEEECSGGG
T ss_pred HHHHcCCEEEEEchhhhhhhhhcccccccccCc------cHHHHhhhhhcc-CCeEEEecccccCCCCc-eEEEecChhH
Confidence 99999999999 3322 110 00000 000000 134 89999999999998854 55555554
Q ss_pred -chhhhhhcCCCCcc-ccCCcCCCcccCCCCccCCCC-CCcchHHHHHHHHhcChhhH-HHHHHHHHHHHHHHHHHHhcC
Q psy1785 458 -SVLTECHSASASYL-FQKDKFYDTKYDSGDKHIQCG-RKPDVLKFWFMWKAKGTDGL-EAHIDKSFDNAKYFTDKIRHR 533 (629)
Q Consensus 458 -~~l~~~~~~~~~yl-~~~~~~~~~~~~~~~~~~~~s-r~~~al~~w~~l~~~G~~G~-~~~~~~~~~la~~l~~~L~~~ 533 (629)
+.+.... .++ .... ..+.+ ....++. ++...-.+.+ ++.+++..++++++.+.|++.
T Consensus 284 ~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~---al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (467)
T 2oqx_A 284 FDVYTECR----TLCVVQEG------------FPTYGGLEGGAME---RLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI 344 (467)
T ss_dssp HHHHHHHH----HHHHHTTS------------SCCCCCCCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HhhhccCC------------cccccchhhhHHH---HHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 2222211 111 0000 00111 1111111 1111001111 234555677889999999988
Q ss_pred CCcEEEccCCCceEEEEEeeC--CCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeeec-----C--C-----cc
Q psy1785 534 PGFKLVLDEPECTNISFWYIP--PSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQPI-----H--A-----LP 598 (629)
Q Consensus 534 ~g~~l~~~~p~~~~v~F~~~p--~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~~-----~--~-----~~ 598 (629)
+++++ + .....+.+.+.. ++.. ..++. ..++.++| .+.|..+...... . + ..
T Consensus 345 -~~~~~-~-~~~~~~~~~~~~~~~~~~----~~~~~------~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~ 411 (467)
T 2oqx_A 345 -GVVCQ-Q-AGGHAAFVDAGKLLPHIP----ADQFP------AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPA 411 (467)
T ss_dssp -TCCEE-E-ECSSCEEEEHHHHSTTSC----GGGCH------HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred -CCeee-c-CCceEEEEechhhcccCC----ccccc------HHHHHHHHHHhcCceecccccccccccccccccccCcc
Confidence 88765 2 233344455421 1111 11110 23567777 7788654321210 0 0 12
Q ss_pred ceEEEeecCCC-CCHHHHHHHHHHHHHHhh
Q psy1785 599 NFFRLVLQNSA-LDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 599 ~~lR~~~~n~~-~t~edid~l~~~i~~l~~ 627 (629)
+++|+++. .. +|++||+++++.|+++.+
T Consensus 412 ~~iRl~~~-~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 412 ELLRLTIP-RATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp CEEEECCC-TTTSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEec-CCCCCHHHHHHHHHHHHHHHh
Confidence 58999996 67 999999999999988754
No 168
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.45 E-value=5.9e-12 Score=135.40 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH-
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA- 330 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~- 330 (629)
.|....+| +.++++.|.+ ..+++++|++++..+ . + .. .|...|+++...|.+......
T Consensus 66 ~p~~~~l~----~~la~l~g~~--~~~~~~sG~~Ai~~~-~-~---l~----------~~gd~Vi~~~~~y~~~~~~~~~ 124 (400)
T 3nmy_A 66 NPTRFAYE----RCVAALEGGT--RAFAFASGMAATSTV-M-E---LL----------DAGSHVVAMDDLYGGTFRLFER 124 (400)
T ss_dssp CHHHHHHH----HHHHHHHTCS--EEEEESSHHHHHHHH-H-T---TS----------CTTCEEEEESSCCHHHHHHHHH
T ss_pred CHHHHHHH----HHHHHHhCCC--CEEEecCHHHHHHHH-H-H---Hc----------CCCCEEEEeCCCchHHHHHHHH
Confidence 45554444 4578888865 578888888876642 1 1 11 134457778888876555533
Q ss_pred ----HcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--e
Q psy1785 331 ----FEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--T 404 (629)
Q Consensus 331 ----~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A 404 (629)
..|+ +++.++.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|++++| +
T Consensus 125 ~~~~~~g~---~~~~v~~~-----d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~ 190 (400)
T 3nmy_A 125 VRRRTAGL---DFSFVDLT-----DPAAFKAAIRA------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNT 190 (400)
T ss_dssp THHHHHCC---EEEEECTT-----SHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred hhHhhcCe---EEEEECCC-----CHHHHHHHhcc------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 3588 88888865 88899888753 466788888999999999999999999999999999 7
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCCC--ccE-EEEEeccchhhhhhcCCCCccccCCcCCCcc
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQ--QCS-VFLTRHQSVLTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~--~~g-~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
++...+..+ ++.|+|.++.++||++++|. -.| +++++++.+....... ..
T Consensus 191 ~~~~~~~~~--------------~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~-----~~-------- 243 (400)
T 3nmy_A 191 FASPMLQRP--------------LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFL-----QN-------- 243 (400)
T ss_dssp TTHHHHCCG--------------GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHH-----HH--------
T ss_pred CcccccCCh--------------hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHH-----HH--------
Confidence 764332211 23369999999999999873 245 4555565444332110 00
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEc
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~ 540 (629)
..+.....+..|+.++. .+.+..++++..++++++.+.|++.|.++-+.
T Consensus 244 --------~~g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~ 292 (400)
T 3nmy_A 244 --------SIGGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVI 292 (400)
T ss_dssp --------HHCCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred --------hcCCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEE
Confidence 01112345777777764 45678889999999999999999999887664
No 169
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.45 E-value=4.8e-12 Score=136.80 Aligned_cols=299 Identities=12% Similarity=0.035 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.+++++++|. ...++++|||+++..++.+++... ...|.++ ...+|+.....|.+...+....|..
T Consensus 100 ~~~~l~~~la~~~g~--~~v~~~~ggteA~~~al~~~~~~~----~~~~~~g-~~~vi~~~~~yh~~~~~~~~~~g~~~~ 172 (420)
T 2pb2_A 100 PALRLGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYA----CVRHSPF-KTKIIAFHNAFHGRSLFTVSVGGQPKY 172 (420)
T ss_dssp HHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHHHHHHHH----HHHTCTT-CCEEEEETTCCCCSSHHHHHHSSCHHH
T ss_pred HHHHHHHHHHhhCCC--CeEEEeCCHHHHHHHHHHHHHHHh----hhccCCC-CCEEEEEeCCcCCcCHHHHHhcCCccc
Confidence 345666778888874 478999999999999999887532 1122111 2346667777887766666655531
Q ss_pred -------CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccc----ccCHHHHHHHHHHcCCeEEE-
Q psy1785 336 -------SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGA----FDPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 336 -------~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~----idpl~ei~~i~~~~~~~lhV- 403 (629)
...+..+|.+ |+++|+++|.+ .+.+|++....+..|. .+++++|+++|++||+++++
T Consensus 173 ~~~~~p~~~~~~~~~~~-----d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~D 241 (420)
T 2pb2_A 173 SDGFGPKPADIIHVPFN-----DLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFD 241 (420)
T ss_dssp HTTSSSCCSCEEEECTT-----CHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCCCCeEEecCC-----CHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 1136667642 88999888853 3455555544444454 47899999999999999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++.+......+.. ....++ ..|.+++ +|+++..+..|.++++++ +... +. ....
T Consensus 242 ev~~g~~~~g~~~~------~~~~~~--~~diit~--sK~l~~G~~iG~~~~~~~-l~~~-l~-------~~~~------ 296 (420)
T 2pb2_A 242 EVQCGMGRTGDLFA------YMHYGV--TPDILTS--AKALGGGFPVSAMLTTQE-IASA-FH-------VGSH------ 296 (420)
T ss_dssp CTTTTTTTTSSSSH------HHHHTC--CCSEEEE--CGGGGTTSCCEEEEECHH-HHTT-CC-----------------
T ss_pred cCCcCcccCCcHHH------HHhcCC--CCCeEEe--cccccCCCceEEEEEhHH-HHHh-hc-------CCCc------
Confidence 6654321111000 011112 3688865 699997677999998763 3322 11 0000
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CCcEEEccCCCceEEEEEeeCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PGFKLVLDEPECTNISFWYIPPSLR 558 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g~~l~~~~p~~~~v~F~~~p~~~~ 558 (629)
.. +. ++.......+..+++.+.. ++..++..+++++|.+.|++. +.+..+ .+..+.+.|.+....
T Consensus 297 -~~--t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~~v~~~~~~-- 365 (420)
T 2pb2_A 297 -GS--TY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI--RGMGLLIGAELKPKY-- 365 (420)
T ss_dssp -CC--EE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE--EEETTEEEEEECGGG--
T ss_pred -Cc--cc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE--EecceEEEEEECCCc--
Confidence 00 00 1222233444555665544 356677777888888888764 333322 233444555543210
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+. ...++.+.|.++|.++ .. . + .+++|+++. ..+|++|++.+++.|+++.++
T Consensus 366 ~~------------~~~~l~~~l~~~Gi~v-~~--~-~-~~~iRl~~~-~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 366 KG------------RARDFLYAGAEAGVMV-LN--A-G-ADVMRFAPS-LVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp TT------------CHHHHHHHHHHTTEEC-EE--S-S-TTEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred hH------------HHHHHHHHHHHCCCEE-Ee--C-C-CCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 00 0135677888888543 22 1 1 368999984 789999999999999887653
No 170
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.45 E-value=7.6e-12 Score=134.86 Aligned_cols=308 Identities=10% Similarity=0.001 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHH--HHHHHHHHhhchhHHhcCCCCCC----CeEEEEcCCcchHHHHHHHHcC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANG--YAISCARHHAFPQIKTQGLASCP----RLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~--~al~~ar~~~~~~~~~~G~~~~p----~~vv~~s~~~H~Si~kaa~~lG 333 (629)
.++.+.++++++.+..+.++|+|+++++. .++.+.... . .|- ..| ...|++..-+|..+..++...|
T Consensus 73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~-~-----~g~-~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g 145 (423)
T 3ez1_A 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHG-V-----RGS-TGPWLSQTPKMIVTVPGYDRHFLLLQTLG 145 (423)
T ss_dssp HHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTC-C-----TTC-SSCGGGGCCEEEEEESCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhcc-C-----CCc-cccccCCCCEEEEcCCCcHHHHHHHHHcC
Confidence 45566688888888778999999999876 555443320 0 010 000 2456777788889999999999
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEe-eCCCccccccCHH---HHHHHH-HHcCCeEEE--ecC
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSAT-SGTTVLGAFDPIP---AIADIC-AEYDMADSV--TWN 406 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat-~Gtt~~G~idpl~---ei~~i~-~~~~~~lhV--A~g 406 (629)
. +++.||.+++| +|+++|+++|++ ...+.+|.++ ...+.+|.+-|.+ +|+++| +++|+++++ +|.
T Consensus 146 ~---~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~ 217 (423)
T 3ez1_A 146 F---ELLTVDMQSDG-PDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYR 217 (423)
T ss_dssp C---EEEEEEEETTE-ECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred C---EEEeccCCCCC-CCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence 9 99999998876 999999998852 1235555444 6788899998877 777788 899999999 676
Q ss_pred cccccc-c-cccccccccccc-cccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 407 PHKLLT-A-PQQCSVFLTRRN-YVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 407 g~~l~~-~-~~~~~~~l~~~~-~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
.+.+.. . +...+ ++.... .+.. +.+.+..+++|+++.....|+++..+ .+........ +.
T Consensus 218 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~~~~~~~-----~~--------- 280 (423)
T 3ez1_A 218 VHHLVEEDRAEPVN-FVVLARDAGYP-DRAFVFASTSKITFAGAGLGFVASSE-DNIRWLSKYL-----GA--------- 280 (423)
T ss_dssp SCBCCSSSCCCCCC-HHHHHHHHTCT-TSEEEEEESTTTSCSSSSCEEEEECH-HHHHHHHHHH-----HH---------
T ss_pred hhhcCCCCCCCCcc-hhhhhhccCCC-CeEEEEeCchhhccCCcceEEEEeCH-HHHHHHHHHH-----hh---------
Confidence 433221 1 00000 001000 0011 26788999999877677888887755 3333221100 00
Q ss_pred CCCccCCCCCCcchHHHHHHHHhcCh--hhHHHHHHH----H----HHHHHHHHHHHhcCC-CcEEEccCCCce-EEEEE
Q psy1785 484 SGDKHIQCGRKPDVLKFWFMWKAKGT--DGLEAHIDK----S----FDNAKYFTDKIRHRP-GFKLVLDEPECT-NISFW 551 (629)
Q Consensus 484 ~~~~~~~~sr~~~al~~w~~l~~~G~--~G~~~~~~~----~----~~la~~l~~~L~~~~-g~~l~~~~p~~~-~v~F~ 551 (629)
.+.....+..+.+...+.. ..+.+.+++ . ..+.+.|.+.|.+++ ++++.. |..+ .+.++
T Consensus 281 -------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~--p~~g~~~~~~ 351 (423)
T 3ez1_A 281 -------QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTL--PKGGYFISLD 351 (423)
T ss_dssp -------SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECC--CSBSSCEEEE
T ss_pred -------hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeC--CCccEEEEEE
Confidence 0001122333333333222 233333222 2 223445555555564 466543 4433 33444
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEe-eeecC----CccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMIT-YQPIH----ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~-~~~~~----~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
+.. . . ...+.+.|.++|..+.. ..... ...+++|+++. .. ++++|+.+++.|+++.
T Consensus 352 ~~~-~-~---------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 352 TAE-P-V---------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPT-RP-PVEEVRTAMQVVAACI 412 (423)
T ss_dssp ESS-S-C---------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCS-SS-CHHHHHHHHHHHHHHH
T ss_pred CCC-C-c---------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcC-CC-CHHHHHHHHHHHHHHH
Confidence 421 1 0 12466778888865432 11111 12368999995 44 9999999999998765
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 413 ~ 413 (423)
T 3ez1_A 413 R 413 (423)
T ss_dssp H
T ss_pred H
Confidence 4
No 171
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.44 E-value=9e-12 Score=133.22 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC--
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS-- 336 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~-- 336 (629)
..++.+++++++|.+ ..++++|||+++..++.+++... ...|.. .+..+++.+...|.+...+....+...
T Consensus 83 ~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~----~~~~~~-g~~~vi~~~~~y~~~~~~~~~~~~~~~~~ 155 (406)
T 4adb_A 83 VLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFA----HDRYGS-HKSGIVAFKNAFHGRTLFTVSAGGQPAYS 155 (406)
T ss_dssp HHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHH----HHHTCT-TCCEEEEETTCCCCSSHHHHHHSSCGGGT
T ss_pred HHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHH----HhcCCC-CCcEEEEECCCcCCCcHHHhhccCCcccc
Confidence 456677888988865 79999999999999998776531 111211 124577778888877666665544211
Q ss_pred -------CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccc-----cccCHHHHHHHHHHcCCeEEE-
Q psy1785 337 -------DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLG-----AFDPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 337 -------~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G-----~idpl~ei~~i~~~~~~~lhV- 403 (629)
.++..+|. .|+++|+++|.. .+.+|+.+ ..+.+| ..+++++|+++|++||+++++
T Consensus 156 ~~~~~~~~~~~~~~~-----~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~D 223 (406)
T 4adb_A 156 QDFAPLPADIRHAAY-----NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFD 223 (406)
T ss_dssp GGGCSCCSSEEEECT-----TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCCceEeCC-----CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 25556654 378899888752 35566666 444444 456899999999999999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++.+......+..+ .. .....|.+++ +|.++..+..|+++.++ ++.... .. ...
T Consensus 224 e~~~~~~~~g~~~~~----~~----~~~~~d~~t~--sK~~~~G~r~G~~~~~~-~~~~~~-~~---~~~---------- 278 (406)
T 4adb_A 224 EVQTGVGRTGELYAY----MH----YGVTPDLLTT--AKALGGGFPVGALLATE-ECARVM-TV---GTH---------- 278 (406)
T ss_dssp CTTTTTTTTSSSSHH----HH----HTCCCSEEEE--CGGGGTTSCCEEEEECH-HHHHTC-CT---TSS----------
T ss_pred ccccCCCccchhHHH----Hh----cCCCCCEEEe--chhhcCCCCeEEEEEcH-HHHhhh-cc---CCc----------
Confidence 67643222211100 11 1113688876 99998555688877765 333321 10 000
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCC-cEEEcc-CCCceEEEEEeeCCCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG-FKLVLD-EPECTNISFWYIPPSLRGK 560 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g-~~l~~~-~p~~~~v~F~~~p~~~~~~ 560 (629)
... .++.......+..+++.+.. ++..++..++++++.+.|++... +.++.+ ......+.|.+.... . .
T Consensus 279 -~~~---~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-~ 349 (406)
T 4adb_A 279 -GTT---YGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY-A-G 349 (406)
T ss_dssp -CCS---STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTT-T-T
T ss_pred -CCC---CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCc-H-H
Confidence 000 01112223333344444433 56677777888888888876421 111110 112334455543210 0 0
Q ss_pred CchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 561 ~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
...++.+.|.++|..+ .. .+ .+++|++++ ..+|++||+.+++.|+++.++
T Consensus 350 ------------~~~~~~~~l~~~gi~v-~~---~~-~~~iRi~~~-~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 350 ------------QAKQISQEAAKAGVMV-LI---AG-GNVVRFAPA-LNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp ------------CHHHHHHHHHHTTEEC-EE---SS-TTEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHCCcEE-ee---cC-CCeEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 0135677888888543 22 12 368999985 899999999999999887643
No 172
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.44 E-value=1.2e-12 Score=143.65 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHH----HHHcC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKL----AAFEG 333 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ka----a~~lG 333 (629)
.-.++.+++++++|.+ +.+++++|++++..++. .. .|...|+++..+|.+...+ ++..|
T Consensus 134 ~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-----~~----------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 196 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-----LI----------KNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-----TS----------CTTCEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-----Hh----------CCCCEEEEECCCchhHHHHHHHHHHHcC
Confidence 3466778899999975 67888888887654332 11 2344567777888887654 45567
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCccccc
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLL 411 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~ 411 (629)
. +++.++.+ |+++|+++|.+ .+.+|+....++.+|.+.|+++|+++|+++|+++++ ++......
T Consensus 197 ~---~v~~v~~~-----d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~ 262 (464)
T 1ibj_A 197 V---VVKRVNTT-----KLDEVAAAIGP------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS 262 (464)
T ss_dssp C---EEEEECTT-----SHHHHHHHCCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC
T ss_pred C---EEEEeCCC-----CHHHHHHHhcc------CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC
Confidence 7 88888864 88899888752 466788889999999999999999999999999999 66543221
Q ss_pred cccccccccccccccccCCcceEEEeCCCCCCCCCCcc--EEEEEeccchh
Q psy1785 412 TAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQC--SVFLTRHQSVL 460 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~--g~ll~r~~~~l 460 (629)
.+ ++.|+|+++.++||++++|.|+ |+++++++.+.
T Consensus 263 ~~--------------~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~ 299 (464)
T 1ibj_A 263 RP--------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA 299 (464)
T ss_dssp CG--------------GGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH
T ss_pred Ch--------------hhcCCEEEEECCcccccCCCCCcEEEEEEChHHHH
Confidence 11 1235999999999999988765 88888764443
No 173
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.43 E-value=1.4e-11 Score=136.43 Aligned_cols=333 Identities=11% Similarity=0.022 Sum_probs=196.4
Q ss_pred ccccChhHHHHHHHHHHHHHHHhC-CC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH
Q psy1785 248 TYEVSPVFSLMEEHVLAQMRTIVG-FQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS 324 (629)
Q Consensus 248 ~~~~~p~~~~~E~~~~~~l~~l~G-~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S 324 (629)
.|..+.....+.+.+.+++.+..| ++ ..+.++|+|+++++..++.+.... |- .+...|++..-+|.+
T Consensus 124 ~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~--------gd--~~~d~Vlv~~p~y~~ 193 (498)
T 3ihj_A 124 SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSG--------GG--KSRTGVMIPIPQYPL 193 (498)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCC--------CG--GGSEEEEEEESCCTH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCC--------CC--CCCCEEEEeCCCchh
Confidence 344455666777788888888774 54 468999999999987776643211 10 023467888889999
Q ss_pred HHHHHHHcCCCCCCEEEEecCCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCC
Q psy1785 325 IKKLAAFEGLGSDNVYLIKTDAR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDM 399 (629)
Q Consensus 325 i~kaa~~lGlg~~~v~~V~~d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~ 399 (629)
+..++...|. +++.++++++ +.+|+++|+++|.+... +..+.+|+.+...+.+|.+ +++++|.++|+++++
T Consensus 194 ~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~ 269 (498)
T 3ihj_A 194 YSAVISELDA---IQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKL 269 (498)
T ss_dssp HHHHHHHTTC---EEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCC---EEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCc
Confidence 9999999998 9999999865 48999999999987532 2235667777888899988 557789999999999
Q ss_pred eEEE--ecCccccccccccccccccc-cccccC--Ccce-EEEeCCCCCC-C-CCCccEEEEE--eccchhhhhhcCCCC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTR-RNYVIE--VVAD-SVTWNPHKLL-T-APQQCSVFLT--RHQSVLTECHSASAS 469 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~-~~~~i~--~gaD-sv~~~~HK~l-~-~P~~~g~ll~--r~~~~l~~~~~~~~~ 469 (629)
++++ +|+...+-......+ +... .+++-. .... .+..+++|.+ + .-.-.|.+.+ .++.+..........
T Consensus 270 ~li~De~y~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~ 348 (498)
T 3ihj_A 270 FLLADEVYQDNVYSPDCRFHS-FKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV 348 (498)
T ss_dssp EEEEECTTTTCBCCTTCCCCC-HHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEcCccccccCCCCCcCC-HHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhc
Confidence 9999 776544321100000 0000 000000 0122 4556899999 4 3345677764 454444332111000
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcCh------------hhHHHHHHHHHHHHHHHHHHHhcCCCcE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT------------DGLEAHIDKSFDNAKYFTDKIRHRPGFK 537 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~------------~G~~~~~~~~~~la~~l~~~L~~~~g~~ 537 (629)
+ .|+ ..+..++...++.. .-++++.++..+.++++.+.|+++||++
T Consensus 349 ~-------------------~~~---~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~ 406 (498)
T 3ihj_A 349 R-------------------LCP---PVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIH 406 (498)
T ss_dssp S-------------------CCC---CHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred c-------------------CCC---CHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 0 011 12222222222321 1123455677788999999999999988
Q ss_pred EEccCCCceEEEE-EeeCCCCCCCCchhhHHHHHhhHHHH--HHHHHHhcCcEEEeeeecC--CccceEEEeecCCCCCH
Q psy1785 538 LVLDEPECTNISF-WYIPPSLRGKEDQADFNELLHKVAPK--IKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDH 612 (629)
Q Consensus 538 l~~~~p~~~~v~F-~~~p~~~~~~~~~~~~~~~l~~~~~~--i~~~l~~~G~~~i~~~~~~--~~~~~lR~~~~n~~~t~ 612 (629)
+. +|..+.+.| ++..+.. ..+....+..-..+ +.+.|.+.|..+....... ...++||+++. .++
T Consensus 407 ~~--~p~gg~~~~~~l~~p~~-----~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~---~~~ 476 (498)
T 3ihj_A 407 CN--PLQGAMYAFPRIFIPAK-----AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL---PPV 476 (498)
T ss_dssp CC--CCCBSSEECCEECCCHH-----HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC---SCH
T ss_pred ec--CCCeEEEEEEeccCchh-----hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC---CCH
Confidence 65 466665554 2321100 00000000000012 3455667887655433322 12358999993 689
Q ss_pred HHHHHHHHHHHHHhh
Q psy1785 613 SDMDYFIDEIERLGH 627 (629)
Q Consensus 613 edid~l~~~i~~l~~ 627 (629)
++++.+++.|+++.+
T Consensus 477 e~l~~~i~~L~~~~~ 491 (498)
T 3ihj_A 477 EKLKTVLQKVKDFHI 491 (498)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
No 174
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.43 E-value=4e-11 Score=127.99 Aligned_cols=296 Identities=11% Similarity=0.022 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC----
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG---- 333 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG---- 333 (629)
...++.+++++++|. ...++++|||+++..++..++... .+.|. ....+++....-|.+...+....+
T Consensus 79 ~~~~l~~~la~~~~~--~~v~~~~gg~ea~~~al~~~~~~~----~~~g~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 150 (395)
T 3nx3_A 79 NIAAAAKNLAKASAL--ERVFFTNSGTESIEGAMKTARKYA----FNKGV--KGGQFIAFKHSFHGRTLGALSLTANEKY 150 (395)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHH----HHTTC--TTCEEEEETTCCCCSSHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHh----hccCC--CCCEEEEEcCCcCCCCHHHHhhcCCccc
Confidence 345666778888873 579999999999999998887542 11231 124566667777765544433222
Q ss_pred -----CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE-
Q psy1785 334 -----LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV- 403 (629)
Q Consensus 334 -----lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV- 403 (629)
.-..++..+|.+ |+++|+++|.+ .+..|+.....+..|.+.| +++|+++|++||+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 219 (395)
T 3nx3_A 151 QKPFKPLISGVKFAKYN-----DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIAD 219 (395)
T ss_dssp HGGGCSCCSCEEEECTT-----CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccCCCCCCcEEeCCC-----CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 001256667653 78899888752 3455666666667788877 99999999999999999
Q ss_pred -ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccch-hhhhhcCCCCccccCCcCCCcc
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSV-LTECHSASASYLFQKDKFYDTK 481 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~-l~~~~~~~~~yl~~~~~~~~~~ 481 (629)
++.+......... ....++ ..|.++++ |.++.++..|.++.+++ . ... +.. ....
T Consensus 220 ev~~~~g~~g~~~~------~~~~~~--~~d~~t~s--K~~~~G~~~G~~~~~~~-~~~~~-~~~---~~~~-------- 276 (395)
T 3nx3_A 220 EIQCGMGRSGKFFA------YEHAQI--LPDIMTSA--KALGCGLSVGAFVINQK-VASNS-LEA---GDHG-------- 276 (395)
T ss_dssp CTTTTTTTTSSSSG------GGGGTC--CCSEEEEC--GGGTTTSCCEEEEECHH-HHHHH-SCT---TCCS--------
T ss_pred ecccCCCcCCcchh------HHhcCC--CCCEEEec--ccccCCCceEEEEEchh-hhhhh-cCC---cccC--------
Confidence 6654321111000 111112 26788776 88877778898888663 3 322 110 0000
Q ss_pred cCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCCcEEEccCCCceEEEEEeeCCCC
Q psy1785 482 YDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPGFKLVLDEPECTNISFWYIPPSL 557 (629)
Q Consensus 482 ~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g~~l~~~~p~~~~v~F~~~p~~~ 557 (629)
.. .++..........+++.+..+. ..++..++.+++++.|++ .+.+..+. +..+.+.|.+....
T Consensus 277 ---~~---~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~- 344 (395)
T 3nx3_A 277 ---ST---YGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPYLEQSLDELINEFDFCKKRK--GLGFMQGLSLDKSV- 344 (395)
T ss_dssp ---SC---BSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEEEEEECTTS-
T ss_pred ---CC---CCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eEEEEEEEEeCCcc-
Confidence 00 0111222222233343332233 344455555555555543 45454332 33344555543210
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+ ..++.+.|.++|.++... + .+++|+++. ..+|++|++++++.|+++.++
T Consensus 345 ----~-----------~~~~~~~l~~~Gi~v~~~----~-~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 345 ----K-----------VAKVIQKCQENALLLISC----G-ENDLRFLPP-LILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp ----C-----------HHHHHHHHHHTTEECEEE----T-TTEEEECCC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred ----h-----------HHHHHHHHHHCCCEEecC----C-CCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 0 135677788889643221 1 358999985 889999999999999988765
No 175
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.43 E-value=1.3e-11 Score=133.34 Aligned_cols=308 Identities=10% Similarity=-0.011 Sum_probs=179.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHH--HHHHHHHHhhchhHHhcCC----CCCCCeEEEEcCCcchHHHHHHHHcC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANG--YAISCARHHAFPQIKTQGL----ASCPRLVLYTSEDAHYSIKKLAAFEG 333 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~--~al~~ar~~~~~~~~~~G~----~~~p~~vv~~s~~~H~Si~kaa~~lG 333 (629)
.++.+.++++++.+..+.++|+|+++++. .++.+.... . .|- ...+...|++..-+|.++..+++..|
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~-~-----~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g 154 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFG-N-----NDSVQPWSKEETVKWICPVPGYDRHFSITERFG 154 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHC-C-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhcc-C-----CcccccccCCCCCEEEEcCCCcHHHHHHHHHcC
Confidence 44556677778888788999999999874 444433321 0 000 00013467777888999999999999
Q ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEe-eCCCccccccCHH---HHHHHH-HHcCCeEEE--ecC
Q psy1785 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSAT-SGTTVLGAFDPIP---AIADIC-AEYDMADSV--TWN 406 (629)
Q Consensus 334 lg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat-~Gtt~~G~idpl~---ei~~i~-~~~~~~lhV--A~g 406 (629)
. +++.||++++| +|+++|++++.. ..+.+|+++ ...+.+|.+-|.+ +|.++| +++++++++ +|+
T Consensus 155 ~---~~~~v~~~~~g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~ 225 (427)
T 3ppl_A 155 F---EMISVPMNEDG-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA 225 (427)
T ss_dssp C---EEEEEEEETTE-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT
T ss_pred C---EEEEeCCCCCC-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc
Confidence 9 99999999887 999999988831 234555544 6789999998877 788888 899999999 666
Q ss_pred ccccccccc-cccccccccc-cccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCC
Q psy1785 407 PHKLLTAPQ-QCSVFLTRRN-YVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDS 484 (629)
Q Consensus 407 g~~l~~~~~-~~~~~l~~~~-~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 484 (629)
...+-..+. ..+ ++.... .+ ..+.+.+..+++|+++....+|.++..+ .+........ .+
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l~~~~~~~~-~~-------------- 287 (427)
T 3ppl_A 226 VHTLTDEFPEVID-IVGLGEAAG-NPNRFWAFTSTSKITLAGAGVSFFLTSA-ENRKWYTGHA-GI-------------- 287 (427)
T ss_dssp TCBSSSCCCCCCC-HHHHHHHTT-CTTSEEEEEESTTTSCTTSSCEEEECCH-HHHHHHHHHH-HH--------------
T ss_pred ccccCCCCCCccc-hhhhhhccC-CCCcEEEEechhhccCcCccEEEEEcCH-HHHHHHHHHh-hc--------------
Confidence 543221100 000 001000 00 1136788899999976667788777654 3333221100 00
Q ss_pred CCccCCCCCCcchHHHHHHHHhcCh-hhHH----HHHHHHHHHHHHHHHH----HhcCCCcEEEccCCCceE-EEEEeeC
Q psy1785 485 GDKHIQCGRKPDVLKFWFMWKAKGT-DGLE----AHIDKSFDNAKYFTDK----IRHRPGFKLVLDEPECTN-ISFWYIP 554 (629)
Q Consensus 485 ~~~~~~~sr~~~al~~w~~l~~~G~-~G~~----~~~~~~~~la~~l~~~----L~~~~g~~l~~~~p~~~~-v~F~~~p 554 (629)
.+.....+..+.+...+.. ..+. +..+...+..+++.+. +...+++++.. |..+. +.+++.
T Consensus 288 ------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~--p~~g~~~~~~~~- 358 (427)
T 3ppl_A 288 ------RGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTV--PAGGYFISLDVV- 358 (427)
T ss_dssp ------HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECC--CSBSSCEEEECS-
T ss_pred ------ccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeC--CCccEEEEEECC-
Confidence 0001123334444444433 2232 3333333334444444 44444566543 44333 334432
Q ss_pred CCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEe-eeecC----CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 555 PSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMIT-YQPIH----ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~-~~~~~----~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.. + ..++.+.|.++|..+.. ..... ...+++|+++. .. ++++|+..++.|+++.+
T Consensus 359 ~~-----~-----------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~-~~-~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 359 PG-----T-----------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPS-LP-PVEELEVAMDGVATCVL 418 (427)
T ss_dssp TT-----C-----------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCS-SS-CHHHHHHHHHHHHHHHH
T ss_pred cc-----h-----------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECC-CC-CHHHHHHHHHHHHHHHH
Confidence 11 0 12566778888865432 11111 12468999995 33 99999999999887654
No 176
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.43 E-value=2.1e-11 Score=132.29 Aligned_cols=312 Identities=12% Similarity=-0.000 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC
Q psy1785 257 LMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG 335 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg 335 (629)
....++.++++++++... ...+|++||++++..++.+++... .+..+|+.....|.+...+....+..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~ 154 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT-----------GRSGVIAFAGAYHGCTVGSMAFSGHS 154 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH-----------SCCEEEEETTCCCCSSHHHHCC----
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh-----------CCCEEEEECCCCCCCcHHHHhhcCCC
Confidence 345667778889886555 589999999999999999887531 13456777888887766655444321
Q ss_pred C-----------CCEEEEecCCCCCC-----CHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q psy1785 336 S-----------DNVYLIKTDARGRM-----LPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICA 395 (629)
Q Consensus 336 ~-----------~~v~~V~~d~~g~~-----d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~ 395 (629)
. ..+..+|.+..+.. |+++|+++|.+ .....+.+|+.....+..|.+.| +++|+++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 232 (439)
T 3dxv_A 155 VQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICR 232 (439)
T ss_dssp ---------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred chhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 0 01234454433333 78899888851 11234566777767777889888 999999999
Q ss_pred HcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCcccc
Q psy1785 396 EYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQ 473 (629)
Q Consensus 396 ~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~ 473 (629)
+|++++++ ++.+......+.. ....++ ..|.+++ .|.+++.+..|+++.++ .+.... . .
T Consensus 233 ~~~~~li~DE~~~g~g~~g~~~~------~~~~~~--~~di~s~--sK~~~~G~riG~~~~~~-~~~~~~-~-------~ 293 (439)
T 3dxv_A 233 AHGILVVCDEVKVGLARSGRLHC------FEHEGF--VPDILVL--GKGLGGGLPLSAVIAPA-EILDCA-S-------A 293 (439)
T ss_dssp HTTCEEEEECTTTCTTTTSSSSG------GGGTTC--CCSEEEE--CGGGGTTSCCEEEEEEH-HHHTSC-S-------S
T ss_pred HcCCEEEEeccccCCCcCchhhH------HHhcCC--CCCEEEE--cchhcCCcceEEEEECH-HHHhhh-c-------C
Confidence 99999999 7765321111000 011111 2677755 49888655678887765 333221 1 0
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCCcEEEccCCCceEEE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPGFKLVLDEPECTNIS 549 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g~~l~~~~p~~~~v~ 549 (629)
... . .+. +..........+++.+..+ ++.++..++.+++++.|++ .+.+..+. +..+.+.
T Consensus 294 ~~~-------~--~t~--~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~ 357 (439)
T 3dxv_A 294 FAM-------Q--TLH--GNPISAAAGLAVLETIDRD---DLPAMAERKGRLLRDGLSELAKRHPLIGDIR--GRGLACG 357 (439)
T ss_dssp SSC-------C--TTT--TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEEE
T ss_pred CCc-------C--CCc--ccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--EEEEEEE
Confidence 000 0 011 1111222222233332223 3445555566666666654 45444332 3334444
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.........+ . ....++.+.|.++|.++... ....+++|++++ ...|++|++.+++.|+++.++
T Consensus 358 ~~~~~~~~~~~~~--~------~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 358 MELVCDRQSREPA--R------AETAKLIYRAYQLGLVVYYV---GMNGNVLEFTPP-LTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp EEEEEETTTTEEC--H------HHHHHHHHHHHHHTEECEEE---STTSCEEEECCC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEecCccccCCC--H------HHHHHHHHHHHHCCcEEeec---CCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 5443211100000 0 11235677888889654322 112368999985 889999999999999887654
No 177
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.42 E-value=2.3e-11 Score=132.38 Aligned_cols=302 Identities=9% Similarity=0.029 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC------
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG------ 333 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG------ 333 (629)
.++.+++++++|. ...++++|||+++..++.+++.... .+.|+......+|+.....|.+...+....|
T Consensus 121 ~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~~~~~~~---~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 195 (439)
T 2oat_A 121 GEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGY---TVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 195 (439)
T ss_dssp HHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHH---HTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred HHHHHHHHHhcCC--CEEEEeCCHHHHHHHHHHHHHHHhh---hccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence 4445567777774 4689999999999999998875311 1123211113566667777877766655544
Q ss_pred -CC--CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHcCCeEEE--e
Q psy1785 334 -LG--SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD----PIPAIADICAEYDMADSV--T 404 (629)
Q Consensus 334 -lg--~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id----pl~ei~~i~~~~~~~lhV--A 404 (629)
.+ ...++.+|.+ |+++|+++|+. ..+.+|++.-..+.+|.+- ++++|+++|++||+++++ +
T Consensus 196 ~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv 265 (439)
T 2oat_A 196 GFGPFMPGFDIIPYN-----DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEI 265 (439)
T ss_dssp TSCSCCTTEEEECSS-----CHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 11 1367777753 89999988851 1345565554444467655 799999999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
+.+.......+ .....++ ..|.+++ .|.++.. +..|++++++ ++.... . ....
T Consensus 266 ~~g~g~~g~~~------~~~~~~~--~~Di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l-~-------~~~~------- 319 (439)
T 2oat_A 266 QTGLARTGRWL------AVDYENV--RPDIVLL--GKALSGGLYPVSAVLCDD-DIMLTI-K-------PGEH------- 319 (439)
T ss_dssp TTTTTTTSSSS------GGGGGTC--CCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTS-C-------TTSS-------
T ss_pred ccCCccCCcch------hHHHhCC--CCcEEEe--cccccCCCCCeEEEEECH-HHHhcc-C-------CCCc-------
Confidence 65422111100 0111122 2687755 5999875 5689998876 333221 1 0000
Q ss_pred CCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEEEEeeCCCCCCCCc
Q psy1785 484 SGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSLRGKED 562 (629)
Q Consensus 484 ~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~F~~~p~~~~~~~~ 562 (629)
.. +. ++.......+..+++.+..+ +..++..+++++|++.|++. ++.++.. .+..+.+.+.+.... +. +
T Consensus 320 ~~--t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~--~~-~ 389 (439)
T 2oat_A 320 GS--TY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK--DW-D 389 (439)
T ss_dssp CC--SS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS--SC-C
T ss_pred cc--CC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc--cH-H
Confidence 00 11 12222333444555554333 45667778999999999886 4432210 123344555543210 00 0
Q ss_pred hhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 563 QADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
..++.++|.++|.++ .. . + .+++|+++. ..+|++|++++++.|+++.+++
T Consensus 390 -----------~~~l~~~l~~~Gv~v-~~--~-~-~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 390 -----------AWKVCLRLRDNGLLA-KP--T-H-GDIIRFAPP-LVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp -----------HHHHHHHHHHTTEEC-CB--S-S-SSEEEECCC-TTCCHHHHHHHHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHCCeEE-ec--C-C-CCEEEEECc-cCCCHHHHHHHHHHHHHHHHhC
Confidence 135677888888543 22 1 2 368999985 8899999999999999887653
No 178
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.41 E-value=4.6e-11 Score=129.67 Aligned_cols=299 Identities=10% Similarity=0.071 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC----
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL---- 334 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl---- 334 (629)
..++.+.+++++|. ...+|++|||+++..++.+++.... .+.|+......+|+.....|.+...+....|.
T Consensus 109 ~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~a~~~~~---~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 109 LGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGY---EVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp HHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHH---HTSCCCTTCCEEEEETTC------------------
T ss_pred HHHHHHHHHhhcCC--CeEEEeCCHHHHHHHHHHHHHHHhh---hccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 34555667777774 4689999999999999998874211 11232111234566666777776655544431
Q ss_pred ---C--CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHcCCeEEE--
Q psy1785 335 ---G--SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD----PIPAIADICAEYDMADSV-- 403 (629)
Q Consensus 335 ---g--~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id----pl~ei~~i~~~~~~~lhV-- 403 (629)
+ ...++.+|.+ |+++|+++|+. ..+.+|++.-..+.+|.+- ++++|+++|++||+++++
T Consensus 184 ~~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 253 (433)
T 1z7d_A 184 SNFGPFAPQFSKVPYD-----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 253 (433)
T ss_dssp --------CEEEECTT-----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 0 0256666653 89999988851 1345566554444467654 899999999999999999
Q ss_pred ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCccc
Q psy1785 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 404 A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
++.+........ .....++ ..|.+++ .|+++.. +..|++++++ ++.... . ...
T Consensus 254 v~~g~g~~g~~~------~~~~~~~--~~di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l-~-------~~~------- 307 (433)
T 1z7d_A 254 VQTGLGRTGKLL------CVHHYNV--KPDVILL--GKALSGGHYPISAVLAND-DIMLVI-K-------PGE------- 307 (433)
T ss_dssp TTTTTTTTSSSS------GGGGGTC--CCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTC-C-------TTC-------
T ss_pred CccCCCcCCcch------hhHhcCC--CCCEEEE--CccccCCCCCeEEEEECH-HHHhhh-c-------ccc-------
Confidence 665432111100 0011122 3787765 5999865 5689888876 333321 1 000
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CCcEEEccCCCceEEEEEeeCCCCC
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PGFKLVLDEPECTNISFWYIPPSLR 558 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g~~l~~~~p~~~~v~F~~~p~~~~ 558 (629)
... +. ++..........+++.+..+ +..++..++++++++.|+++ +.+..+ .+..+.+.+.+.+..
T Consensus 308 ~~~--t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~--~~~g~~~~i~~~~~~-- 377 (433)
T 1z7d_A 308 HGS--TY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDV--RGKGLLCAIEFKNEL-- 377 (433)
T ss_dssp CCC--TT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE--EEETTEEEEEECTTT--
T ss_pred ccc--cC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--EeeeeEEEEEEccCh--
Confidence 000 11 12222333344455544333 34566677888888888764 322222 233344555543210
Q ss_pred CCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 559 GKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 559 ~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
. + ..++.+.|.++|.++ .. . + .+++|+++. ..+|++||+++++.|+++.+
T Consensus 378 -~-~-----------~~~~~~~l~~~Gv~v-~~--~-~-~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~ 427 (433)
T 1z7d_A 378 -V-N-----------VLDICLKLKENGLIT-RD--V-H-DKTIRLTPP-LCITKEQLDECTEIIVKTVK 427 (433)
T ss_dssp -C-C-----------HHHHHHHHHHTTEEC-CE--E-T-TTEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -h-H-----------HHHHHHHHHHCCeEE-ec--C-C-CCEEEEECC-cCCCHHHHHHHHHHHHHHHH
Confidence 0 0 135677888888543 22 1 2 358999985 88999999999999988754
No 179
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.41 E-value=4.7e-12 Score=134.85 Aligned_cols=297 Identities=11% Similarity=0.062 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHhCCC-CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCC---cchHHHHHHHHc
Q psy1785 257 LMEEHVLAQMRTIVGFQ-GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSED---AHYSIKKLAAFE 332 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~-~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~---~H~Si~kaa~~l 332 (629)
.++.++.+.+++++|.+ ..+.++++|||+++..++.+. . | . .|+++.. .|+++.+++...
T Consensus 58 ~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~--------g-----d-~Vl~~~~~y~~~~~~~~~~~~~ 121 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--K--------P-----K-KVIHYLPELPGHPSIERSCKIV 121 (374)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--C--------C-----S-EEEEECSSSSCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--C--------C-----C-EEEEecCCCCccHHHHHHHHHc
Confidence 45566777778899984 246799999999998887753 2 2 2 2344444 467766777888
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEE-EEEeeCCCccc-cccCHHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFM-VSATSGTTVLG-AFDPIPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~-Vvat~Gtt~~G-~idpl~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
|. +++.+ +|+++|+++ . ..+.+ |+....++.+| ...|+++|.++|+++|+++++ +++..
T Consensus 122 g~---~~~~v-------~d~~~l~~~-~------~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~ 184 (374)
T 2aeu_A 122 NA---KYFES-------DKVGEILNK-I------DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGAR 184 (374)
T ss_dssp TC---EEEEE-------SCHHHHHTT-C------CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred Cc---EEEEe-------CCHHHHHhc-C------CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccc
Confidence 87 77777 388888765 2 13556 66677778888 899999999999999999999 55443
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
.. .+.. .... +..++|.++.++||++++| ..|+++.++ ++........ .+ ++
T Consensus 185 ~~-~~~~------~~~~--~~~~~di~~~S~sK~l~g~-~~G~~~~~~-~~~~~l~~~~-~~-------------~~--- 236 (374)
T 2aeu_A 185 VR-LLFN------QPPA--LKLGADLVVTSTDKLMEGP-RGGLLAGKK-ELVDKIYIEG-TK-------------FG--- 236 (374)
T ss_dssp HH-HHTT------CCCH--HHHTCSEEEEETTSSSSSC-SCEEEEEEH-HHHHHHHHHH-HT-------------TT---
T ss_pred cc-cccc------cCCc--cccCCcEEEecCcccccCc-ceEEEEECH-HHHHHHHHhh-cc-------------cc---
Confidence 21 0100 0000 1124899999999998765 788877765 4443321100 00 00
Q ss_pred CCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHH----HHHHHHHHhcC---CCcEEEccCCCceEEEEEeeCCCCCCCC
Q psy1785 489 IQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDN----AKYFTDKIRHR---PGFKLVLDEPECTNISFWYIPPSLRGKE 561 (629)
Q Consensus 489 ~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~l----a~~l~~~L~~~---~g~~l~~~~p~~~~v~F~~~p~~~~~~~ 561 (629)
. +........+..+++.+..+-++++.++...+ .+.|.+.|... +|+++.. .|. +.+.++....
T Consensus 237 ~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~-~~~-g~~~~~~~~~------ 307 (374)
T 2aeu_A 237 L-EAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER-TPT-GFVIKRVYKD------ 307 (374)
T ss_dssp C-BCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE-CSS-EEEEEEEESS------
T ss_pred C-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee-CCc-eEEEEeeccc------
Confidence 0 00111222333344444322344444444444 35556655554 3666543 333 3333332111
Q ss_pred chhhHHHHHhhHHHHHH-HHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 562 DQADFNELLHKVAPKIK-ERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~-~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.... ... ..++. +.+.+.|.++..+....+..+++|++++....++++++++++.|++..++
T Consensus 308 ---~~~~-~~~-~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 308 ---DTIN-IKK-LIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp ---HHHH-HHH-HHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred ---cccc-ccc-hHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 01233 34455786543322222223589999975566666799999998877653
No 180
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.41 E-value=9.3e-12 Score=133.96 Aligned_cols=312 Identities=11% Similarity=0.001 Sum_probs=186.8
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK 327 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k 327 (629)
|...+....+.+.+.+++.+..+.+. .+.++|+||++++..++.+.. .|...|++..-+|.++..
T Consensus 76 y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------------~~gd~Vl~~~p~~~~~~~ 141 (418)
T 3rq1_A 76 YAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT--------------EPGDEVLTADWYWGAYRV 141 (418)
T ss_dssp CCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS--------------CTTCEEEEESSCCTHHHH
T ss_pred CCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc--------------CCCCEEEECCCCchhHHH
Confidence 33334455666666666665554321 268999999999887776432 134467778888999999
Q ss_pred HHHHcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeC-CCccccccCHHHHHHH---HH------H
Q psy1785 328 LAAFEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSG-TTVLGAFDPIPAIADI---CA------E 396 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~G-tt~~G~idpl~ei~~i---~~------~ 396 (629)
++...|. +++.+|++ +++.+|+++|++++.+..... ...+|+.... .+.+|.+-|.+++.++ |+ +
T Consensus 142 ~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~ 217 (418)
T 3rq1_A 142 ICSDTGR---TLVTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGR 217 (418)
T ss_dssp HHHHTTC---EEEEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHcCC---EEEEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccC
Confidence 9999998 99999985 557999999999997643222 2335556555 7899999886666554 55 8
Q ss_pred cCCeEEE--ecCcccccccccccccccc-ccccccCCcc-eEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCC
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLT-RRNYVIEVVA-DSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASAS 469 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~-~~~~~i~~ga-Dsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~ 469 (629)
+++++++ +|.+...-.. ....++. .. ++.... ..++.+++|.++.| ...|.++. +++++....... ..
T Consensus 218 ~~~~li~De~y~~~~~~~~--~~~~~~~~~~--~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-~~ 292 (418)
T 3rq1_A 218 NNVIIGIDVAYLDYSGEKD--EVRAFFNKFS--HLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEV-NK 292 (418)
T ss_dssp CEEEEEEECTTGGGSSCHH--HHHGGGGGGT--TCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHH-HH
T ss_pred CCeEEEEecccccccCChH--HHHHHHHHHH--hcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHH-HH
Confidence 9999999 6654332110 0000101 11 111101 26778999998754 45777776 344444332110 00
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChh--------hHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTD--------GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD 541 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~--------G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~ 541 (629)
+.... .......+....+...+... .++++.++..++.+++.+.|+++ |+++..
T Consensus 293 ~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 354 (418)
T 3rq1_A 293 STSRA----------------TWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLP- 354 (418)
T ss_dssp HHHHH----------------HTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCC-
T ss_pred HHHhh----------------ccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCC-
Confidence 11000 00011233333333333322 22344566677888889999887 887653
Q ss_pred CCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHH
Q psy1785 542 EPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDE 621 (629)
Q Consensus 542 ~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~ 621 (629)
|..+.+.|.-.+. ..++.+.|.++|..+.. + .+++|++++ ..++++|+.+++.
T Consensus 355 -~~~~~~~~~~~~~------------------~~~~~~~l~~~gi~v~~-----g-~~~iRis~~--~~~~~~i~~~~~~ 407 (418)
T 3rq1_A 355 -YRGGFFITIPTDS------------------ANAICEELKKEHIYVIA-----L-ANGIRIAAC--GIPKCQMTGLAEK 407 (418)
T ss_dssp -CCSSSEEEEECTT------------------HHHHHHHHHHTTEECEE-----C-SSEEEEEGG--GSCHHHHTTHHHH
T ss_pred -CCceEEEEcCCCC------------------HHHHHHHHHhCCEEEec-----C-CCCeEEEEe--cCCHHHHHHHHHH
Confidence 4444443321110 12456678888864432 1 247999974 5699999999999
Q ss_pred HHHHhhc
Q psy1785 622 IERLGHD 628 (629)
Q Consensus 622 i~~l~~~ 628 (629)
|+++.++
T Consensus 408 l~~~l~~ 414 (418)
T 3rq1_A 408 IYNAMKS 414 (418)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 181
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.39 E-value=9.5e-12 Score=132.64 Aligned_cols=306 Identities=9% Similarity=0.044 Sum_probs=181.0
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC--CCC--CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF--QGG--DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS 324 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~--~~~--~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S 324 (629)
|...+....+.+.+.+++.+..+. +.. +.++|+|+|+++..++...... .|...|++..-+|.+
T Consensus 66 y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~------------~~gd~vl~~~p~~~~ 133 (397)
T 3fsl_A 66 YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY------------FPESGVWVSDPTWEN 133 (397)
T ss_dssp CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------------CTTCCEEEESSCCHH
T ss_pred CCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc------------CCCCeEEEeCCCchh
Confidence 333344444545544444333221 334 6799999999988776433221 133456778888999
Q ss_pred HHHHHHHcCCCCCCEEEEec--CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCC
Q psy1785 325 IKKLAAFEGLGSDNVYLIKT--DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDM 399 (629)
Q Consensus 325 i~kaa~~lGlg~~~v~~V~~--d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~ 399 (629)
+...+...|. +++.+|. ++++.+|+++|++++.+. .....+|+.+...+.+|.+ +++++|+++|+++++
T Consensus 134 ~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~ 207 (397)
T 3fsl_A 134 HVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL 207 (397)
T ss_dssp HHHHHHHTTC---CEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---ceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE
Confidence 9999999998 9999998 467899999999998641 2245677777888889988 567799999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCccccC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl~~~ 474 (629)
++++ +|+....-......+ +.... +... -..+..+++|.++.| ..+|.+++ .++..+.........+....
T Consensus 208 ~li~De~~~~~~~~~~~~~~~-~~~~~--~~~~-~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (397)
T 3fsl_A 208 IPFLDIAYQGFGAGMEEDAYA-IRAIA--SAGL-PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRN 283 (397)
T ss_dssp EEEEEESCTTSSSCTTGGGHH-HHHHH--HTTC-CEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCchhhccCcccccHH-HHHHH--hcCC-CEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 9999 666543211000000 00110 1112 457788899999843 34787765 33333332211000000000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCC
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEP 543 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p 543 (629)
..+. ..+....+...+. .+.+++..++..++.+++.+.|++.+ ++++.. |
T Consensus 284 --------------~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~ 344 (397)
T 3fsl_A 284 --------------YSSP---PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLL--N 344 (397)
T ss_dssp --------------TSSC---CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHH--H
T ss_pred --------------cCCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeec--C
Confidence 0011 1111222222221 35567778888889999999998875 565433 4
Q ss_pred CceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 544 ECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 544 ~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
..+.++|. . +. . ..+.+.+.++|..+ . .+ . |++++ ..++++|+.+++.|+
T Consensus 345 ~~~~~~~~-~---~~----~-----------~~~~~~l~~~gi~v-~----~g--~--Ris~~--~~~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 345 QRGMFSYT-G---LS----A-----------AQVDRLREEFGVYL-I----AS--G--RMCVA--GLNTANVQRVAKAFA 394 (397)
T ss_dssp CCSSEEEC-C---CC----H-----------HHHHHHHHTTCEEC-C----TT--C--EEEGG--GCCTTTHHHHHHHHH
T ss_pred CceEEEec-C---CC----H-----------HHHHHHHHhCCEEE-C----CC--C--eEEEE--ecCHhhHHHHHHHHH
Confidence 44444331 1 10 0 23456667778543 2 12 1 99985 335577999999998
Q ss_pred HH
Q psy1785 624 RL 625 (629)
Q Consensus 624 ~l 625 (629)
++
T Consensus 395 ~~ 396 (397)
T 3fsl_A 395 AV 396 (397)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 182
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.39 E-value=2.4e-10 Score=123.21 Aligned_cols=294 Identities=10% Similarity=0.006 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhCCC-CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC----
Q psy1785 260 EHVLAQMRTIVGFQ-GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL---- 334 (629)
Q Consensus 260 ~~~~~~l~~l~G~~-~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl---- 334 (629)
.++.+.+++.+|.+ ....++++||++++..++..++.. ...-+|+....-|.+...+....|-
T Consensus 89 ~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~------------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~ 156 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT------------GRKYIIAFLGGFHGRTFGSISLTASKAVQ 156 (419)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT------------SCCEEEEETTCCCCSSHHHHHHCCSCGGG
T ss_pred HHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh------------hCCcEEEECCCcCCCCHhhHhhcCCcccc
Confidence 44556788889987 568999999999999999877642 0234666667778766665554331
Q ss_pred ----C--CCCEEEEecCCCCC----------------CCHHHHH-HHHHHHHhCCCCcEEEEEeeCCCccccccC----H
Q psy1785 335 ----G--SDNVYLIKTDARGR----------------MLPESLR-GEIQRTLAEGAVPFMVSATSGTTVLGAFDP----I 387 (629)
Q Consensus 335 ----g--~~~v~~V~~d~~g~----------------~d~~~Le-~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l 387 (629)
+ ...++.+|.+++.+ +|+++|+ ++|.+. .....+.+|++.-..+.+|.+-| +
T Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~vi~~p~~~~tG~~~~~~~~l 235 (419)
T 2eo5_A 157 RSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNL-VPPEEVAGIFFEPIQGEGGYVIPPKNFF 235 (419)
T ss_dssp GCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT-CCGGGEEEEEECSSBTTTTSBCCCTTHH
T ss_pred ccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhc-cCCCCEEEEEEeCccCCCCCccCCHHHH
Confidence 1 12688888865533 4688888 887641 00013445555544445787666 9
Q ss_pred HHHHHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhh
Q psy1785 388 PAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECH 464 (629)
Q Consensus 388 ~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~ 464 (629)
++|+++|++||+++++ ++.+.........+ .. .++ ..|.++++ |.++.+ ..+|.++.+++ +. . +
T Consensus 236 ~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~----~~--~~~--~~d~~t~s--K~~~~G~~riG~~~~~~~-~~-~-~ 302 (419)
T 2eo5_A 236 AELQKLAKKYGILLVDDEVQMGLGRTGKLFAI----EN--FNT--VPDVITLA--KALGGGIMPIGATIFRKD-LD-F-K 302 (419)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG----GG--GTC--CCSEEEEC--GGGGTTTSCCEEEEEEGG-GC-C-C
T ss_pred HHHHHHHHHcCCEEEEeccccCCccCcchhhH----Hh--cCC--CCCEEEec--ccccCCccceEEEEEchH-hh-c-C
Confidence 9999999999999999 66543211110000 11 111 26777655 888876 78899988764 32 2 1
Q ss_pred cCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCC
Q psy1785 465 SASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE 544 (629)
Q Consensus 465 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~ 544 (629)
. . .. .+ + .+........+..+++. +++..++..++.++|.+.|+++ +..+ ++.
T Consensus 303 ~---~-~~-----------~~--t-~~~n~~~~~aa~aal~~-----~~~~~~~~~~~~~~l~~~L~~~--~~~~--~~~ 355 (419)
T 2eo5_A 303 P---G-MH-----------SN--T-FGGNALACAIGSKVIDI-----VKDLLPHVNEIGKIFAEELQGL--ADDV--RGI 355 (419)
T ss_dssp -----------------------C-CCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTS--SSEE--EEE
T ss_pred C---c-cc-----------CC--C-CCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh--hhhe--Eee
Confidence 1 0 00 00 0 01112222222333332 2236677788999999999876 3222 233
Q ss_pred ceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 545 CTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 545 ~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.+.+.+.+.|. . .... +.++|.++|.++... + .+++|+++. ..+|++|++.+++.|++
T Consensus 356 g~~~~i~~~~~------------~---~~~~-~~~~l~~~Gv~v~~~----~-~~~lRis~~-~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 356 GLAWGLEYNEK------------K---VRDR-IIGESFKRGLLLLPA----G-RSAIRVIPP-LVISEEEAKQGLDILKK 413 (419)
T ss_dssp TTEEEEECSCH------------H---HHHH-HHHHHHHTTEECEEE----T-TTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred eEEEEEEEecC------------c---cHHH-HHHHHHHCCCEEecC----C-CCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 34444544220 0 0123 677788888654221 1 358999984 88999999999999998
Q ss_pred Hhhc
Q psy1785 625 LGHD 628 (629)
Q Consensus 625 l~~~ 628 (629)
+.++
T Consensus 414 ~l~~ 417 (419)
T 2eo5_A 414 VIKV 417 (419)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 183
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.38 E-value=1.1e-11 Score=134.55 Aligned_cols=318 Identities=10% Similarity=0.073 Sum_probs=174.7
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhc-h-hHHhcCCCCCCC--eEEEEc-CCc
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAF-P-QIKTQGLASCPR--LVLYTS-EDA 321 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~-~-~~~~~G~~~~p~--~vv~~s-~~~ 321 (629)
|...+....+.+.+.+++.+..|+. ..+.++|+|+|+++..++.+....-- + ...+.| +. ..|+++ .-+
T Consensus 79 y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~----~g~~~~vi~~~~p~ 154 (444)
T 3if2_A 79 YSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKES----KSVDKSILLPLTPE 154 (444)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-----------CEEEEEEEESSSSC
T ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCcccccccccc----ccccceEEEeCCCC
Confidence 4334445677777777777777664 36899999999999887765422100 0 000000 00 034443 334
Q ss_pred chHHHHHH------HHcCCCCCCEEEEecCC-CC----CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---H
Q psy1785 322 HYSIKKLA------AFEGLGSDNVYLIKTDA-RG----RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---I 387 (629)
Q Consensus 322 H~Si~kaa------~~lGlg~~~v~~V~~d~-~g----~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l 387 (629)
|.....++ ...|. .++.+++++ +| .+|+++|+++++... ..+.+|+.+...+.+|.+-| +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l 228 (444)
T 3if2_A 155 YIGYSDVHVEGQHFAAVLP---HIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRPTNPTGNVLTDEEM 228 (444)
T ss_dssp CGGGTTCCSSSCCEEECCC---EEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESSCTTTCCCCCHHHH
T ss_pred ccchhhcccccchhhccCc---eEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCCCCCCCCcCCHHHH
Confidence 44433321 12234 777888876 44 799999999865431 24567777778889999988 8
Q ss_pred HHHHHHHHHcCCeEEE--ecCcccccccccccccccccccc--ccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhh
Q psy1785 388 PAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNY--VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC 463 (629)
Q Consensus 388 ~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~--~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~ 463 (629)
.+|+++|+++|+++++ +++.... .. .+... ... +.+.++.++||++.....+|+++... .+....
T Consensus 229 ~~i~~~a~~~~~~li~De~~~~~~~-~~--------~~~~~~~~~~-~~~i~~~S~sK~~~~G~r~G~~~~~~-~l~~~~ 297 (444)
T 3if2_A 229 AHLAEIAKRYDIPLIIDNAYGMPFP-NI--------IYSDAHLNWD-NNTILCFSLSKIGLPGMRTGIIVADA-KVIEAV 297 (444)
T ss_dssp HHHHHHHHHTTCCEEEECTTCTTTT-CC--------BCSCCCCCCC-TTEEEEEESTTTTCGGGCCEEEECCH-HHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCccc-cc--------ccccccccCC-CCEEEEechhhccCCCCceEEEEECH-HHHHHH
Confidence 8899999999999999 6653211 00 00000 112 37889999999855446678776543 333322
Q ss_pred hcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHH-----HHHHHHHHHHHHHHHHhc-CC--C
Q psy1785 464 HSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEA-----HIDKSFDNAKYFTDKIRH-RP--G 535 (629)
Q Consensus 464 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~-----~~~~~~~la~~l~~~L~~-~~--g 535 (629)
......+ + .++ ..+...++...+....+.+ ..++..+..+++.+.|++ .+ +
T Consensus 298 ~~~~~~~-----------------~-~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 356 (444)
T 3if2_A 298 SAMNAVV-----------------N-LAP---TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYP 356 (444)
T ss_dssp HHHHHHH-----------------H-SSC---CCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHhc-----------------c-CCC---ChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 1100000 0 011 1122222222221222221 223334455566666554 34 4
Q ss_pred cEEEccCCCce-EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC-C--------ccceEEEee
Q psy1785 536 FKLVLDEPECT-NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH-A--------LPNFFRLVL 605 (629)
Q Consensus 536 ~~l~~~~p~~~-~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-~--------~~~~lR~~~ 605 (629)
+++.. |..+ .+.+.+...+.. ..++.+.|.++|..+....... + ..+++|+++
T Consensus 357 ~~~~~--~~~g~~~~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~ 419 (444)
T 3if2_A 357 LMIHK--PEGAIFLWLWFKDLPIS---------------TLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSI 419 (444)
T ss_dssp EEEEC--CCBSSEEEEEETTCSSC---------------HHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEES
T ss_pred ceEec--CCccEEEEEEcCCCCCC---------------HHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEE
Confidence 56553 3333 333443221111 1256677888886543322211 1 125899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 606 QNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 606 ~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+ . ++++|+.+++.|+++.++
T Consensus 420 ~-~--~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 420 A-A--DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp S-S--CHHHHHHHHHHHHHHHHH
T ss_pred e-C--CHHHHHHHHHHHHHHHHH
Confidence 6 3 999999999999887543
No 184
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.38 E-value=4e-10 Score=122.71 Aligned_cols=325 Identities=10% Similarity=0.044 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC-
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG- 335 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg- 335 (629)
....++.++++++++.+.. .+|++|||+++..++..++... ...|.+ ....+++....-|....-+...-|..
T Consensus 91 ~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~ 164 (452)
T 3n5m_A 91 EPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYY----AQKGEP-HRYKFMSRYRGYHGNTMATMAATGQAQ 164 (452)
T ss_dssp HHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHH----HTTTCT-TCCEEEEETTCCCCSSHHHHHSCCCGG
T ss_pred HHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEECCCcCCCCHHHHhcCCchh
Confidence 4456677788888887655 9999999999999999988531 111211 12456666777776554444433321
Q ss_pred --------CCCEEEEecCCCCCC---C---------HHHHHHHHHHHHhCCCCcEEEEEeeC-CCccccccC----HHHH
Q psy1785 336 --------SDNVYLIKTDARGRM---L---------PESLRGEIQRTLAEGAVPFMVSATSG-TTVLGAFDP----IPAI 390 (629)
Q Consensus 336 --------~~~v~~V~~d~~g~~---d---------~~~Le~~i~~~~~~g~~~~~Vvat~G-tt~~G~idp----l~ei 390 (629)
...+..++.....+. | +++|+++|.+. ......+|++.-. .+ +|.+-| +++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l 241 (452)
T 3n5m_A 165 RRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAV 241 (452)
T ss_dssp GTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred hccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence 124566664222111 2 88999888731 1123455666655 57 898877 9999
Q ss_pred HHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcC-
Q psy1785 391 ADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSA- 466 (629)
Q Consensus 391 ~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~- 466 (629)
+++|++||+++++ ++.+........ .....++ ..|.++++ |.++.. ...|.++.++ ++.+.. ..
T Consensus 242 ~~l~~~~~~llI~DEv~~g~g~~g~~~------~~~~~~~--~~di~t~s--K~l~~G~~~ig~~~~~~-~i~~~~-~~~ 309 (452)
T 3n5m_A 242 HETCQKHGALLISDEVICGFGRTGKAF------GFMNYDV--KPDIITMA--KGITSAYLPLSATAVKR-EIYEAF-KGK 309 (452)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSS------GGGGTTC--CCSEEEEC--GGGGTTSSCCEEEEEEH-HHHGGG-CSS
T ss_pred HHHHHHcCCEEEEecchhCCCcccccc------hhhhcCC--CCCEEeec--ccccCCCcceEEEEECH-HHHHHH-hhc
Confidence 9999999999999 655432111100 0111122 26788765 877765 6678888765 343322 11
Q ss_pred --CCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHh----cCCCcEEEc
Q psy1785 467 --SASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR----HRPGFKLVL 540 (629)
Q Consensus 467 --~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~----~~~g~~l~~ 540 (629)
...++.. +. .++..........+++.+..++ .+++..++.+++++.|+ +.+.+..+.
T Consensus 310 ~~~~~~~~~-----------~t---~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 372 (452)
T 3n5m_A 310 GEYEFFRHI-----------NT---FGGNPAACALALKNLEIIENEN---LIERSAQMGSLLLEQLKEEIGEHPLVGDIR 372 (452)
T ss_dssp STTCSCCCC-----------CS---STTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred cCCCCcccc-----------CC---CCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0011100 00 1122222223333344333333 34444555555555554 445554432
Q ss_pred cCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeee-cCCccceEEEeecCCCCCHHHHHHHH
Q psy1785 541 DEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQP-IHALPNFFRLVLQNSALDHSDMDYFI 619 (629)
Q Consensus 541 ~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~-~~~~~~~lR~~~~n~~~t~edid~l~ 619 (629)
+.-..+.+.+........ .+.. ....++.+.|.++|.++..... ..+..+++|+++. ...|++||+.++
T Consensus 373 --~~g~~~~i~~~~~~~~~~----~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~l 442 (452)
T 3n5m_A 373 --GKGLLVGIELVNDKETKE----PIDN---DKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPP-LVISSEEIAFVI 442 (452)
T ss_dssp --ESSSCEEEEEEEETTTTE----ECCH---HHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCC-TTCCHHHHHHHH
T ss_pred --EEEEEEEEEEecCCcccC----CCCH---HHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECC-CCCCHHHHHHHH
Confidence 222233333321110000 0000 1123577888889965432211 1112468999985 889999999999
Q ss_pred HHHHHHhhcC
Q psy1785 620 DEIERLGHDL 629 (629)
Q Consensus 620 ~~i~~l~~~l 629 (629)
+.|+++.+++
T Consensus 443 ~~l~~~l~~~ 452 (452)
T 3n5m_A 443 GTLKTAMERI 452 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999887654
No 185
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.38 E-value=6.6e-11 Score=127.93 Aligned_cols=326 Identities=15% Similarity=0.096 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.+++++.++.+....++++||++++..++.+++... ...|-.+ ...+|+....-|.....+...-+..
T Consensus 73 ~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~----~~~g~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~ 147 (430)
T 3i4j_A 73 VLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYH----VERGEPG-RFKVITRVPSYHGASLGSLAASGMGAR 147 (430)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTC-----------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH----HhcCCCC-CcEEEEEeCCcCCCCcccccccCcccc
Confidence 33566678889998776789999999999999999887642 1223111 2345555666565543333222210
Q ss_pred -------CC--CEEEEecCCC---CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCC-ccccccC----HHHHHHHHHHcC
Q psy1785 336 -------SD--NVYLIKTDAR---GRMLPESLRGEIQRTLAEGAVPFMVSATSGTT-VLGAFDP----IPAIADICAEYD 398 (629)
Q Consensus 336 -------~~--~v~~V~~d~~---g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt-~~G~idp----l~ei~~i~~~~~ 398 (629)
.. ++..+|.++. +..|+++|+++|++.. .....+|++.-..+ ..|.+-| +++|+++|++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (430)
T 3i4j_A 148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAG 225 (430)
T ss_dssp --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcC
Confidence 01 4555665443 4457789999887531 02345566666556 7787777 999999999999
Q ss_pred CeEEE--ecCcccccccccccccccccccc-ccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccC
Q psy1785 399 MADSV--TWNPHKLLTAPQQCSVFLTRRNY-VIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 399 ~~lhV--A~gg~~l~~~~~~~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~ 474 (629)
+++++ ++.+........ ..... ++ ..|.++++ |.++.. +..|.++.++ ++..........+....
T Consensus 226 ~~li~DEv~~~~~~~g~~~------~~~~~~~~--~~di~t~s--K~l~~G~~r~G~~~~~~-~i~~~~~~~~~~~~~~~ 294 (430)
T 3i4j_A 226 IIFIADEVMSGMGRCGSPL------ALSRWSGV--TPDIAVLG--KGLAAGYAPLAGLLAAP-QVYETVMGGSGAFMHGF 294 (430)
T ss_dssp CEEEEECTTTTTTTTSSSS------GGGGTTTC--CCSEEEEC--GGGTTTSSCCEEEEECH-HHHHHHHHTTCBCCCCC
T ss_pred CEEEEechhhCCCcccchh------hhhhhcCC--CCcEEEEc--ccccCCccccEEEEECH-HHHHHHhccCCcccccC
Confidence 99999 665432211100 01111 11 25778765 998864 5578887754 44433211110111100
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHh----cCCCcEEEccCCCceEEEE
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR----HRPGFKLVLDEPECTNISF 550 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~----~~~g~~l~~~~p~~~~v~F 550 (629)
+ -++..........+++.+..+.+ .++..++.+++++.|+ +.|++..+. +..+.+.+
T Consensus 295 -------------t-~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~ 355 (430)
T 3i4j_A 295 -------------T-YAGHPVSVAAGLSVLDIVEREDL---TGAAKERGAQLLAGLQALQARFPQMMQVR--GTGLLLGV 355 (430)
T ss_dssp -------------T-TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEEEE
T ss_pred -------------C-CCCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEE--EEEEEEEE
Confidence 0 01112222233334443323333 3444444445544444 456665543 33444455
Q ss_pred EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEee-eecCC-ccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITY-QPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 551 ~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~-~~~~~-~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.+.... ... .+. -.....++.+.|.++|.++... ....+ ..+++|+++. ...|+++++.+++.|+++.++
T Consensus 356 ~~~~~~--~~~---~~~--~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 356 VLGDLA--TGQ---AFE--TPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPP-LSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EEC-------------------CHHHHHHHHHHTTEECC-----------CEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred Eecccc--ccC---CCc--cHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 443110 000 000 0001236778888999654221 01111 1358999985 789999999999999987653
No 186
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.37 E-value=5.7e-12 Score=136.41 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=153.4
Q ss_pred HHHHHHHHhCCCCCCeEE---eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcC-CcchHHH-----------
Q psy1785 262 VLAQMRTIVGFQGGDGIF---CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSE-DAHYSIK----------- 326 (629)
Q Consensus 262 ~~~~l~~l~G~~~~~g~~---~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~-~~H~Si~----------- 326 (629)
+.+.+++++|.+.. ++ +++||.+|..++.+.. .|...|+++. ..|....
T Consensus 78 Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~all--------------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 78 LDAVYARVFNTESA--LVRPHFVNGTHALGAALFGNL--------------RPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp HHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHHC--------------CTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred HHHHHHHHhCCcce--EEeCCCccHHHHHHHHHHHHh--------------CCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 33568999998643 55 7899999877665432 1444566665 6666544
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--cCCe
Q psy1785 327 KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATS----GTTVLGAFDPIPAIADICAE--YDMA 400 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~----Gtt~~G~idpl~ei~~i~~~--~~~~ 400 (629)
+.+...|+ +++.++.+++|.+|+++|+++|.+ ...+.+|+... .++.+|.+.|+++|+++|++ +|++
T Consensus 142 ~~l~~~G~---~~~~v~~~~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~ 214 (427)
T 3i16_A 142 GSLKEFGI---NYKQVDLKEDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDII 214 (427)
T ss_dssp CCTGGGTC---EEEECCCCTTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHcCC---EEEEecCccCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCE
Confidence 33445677 899999999999999999999863 12466777766 78899999999999999999 9999
Q ss_pred EEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCC--ccEEEEEeccchhhhhhcC-CCCccccCC
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQ--QCSVFLTRHQSVLTECHSA-SASYLFQKD 475 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~--~~g~ll~r~~~~l~~~~~~-~~~yl~~~~ 475 (629)
++| +|+.......| ++.|+|.++.++||+++.+. ..|+++.+ +++.+..... ....+
T Consensus 215 livD~a~~~~~~~~~p-------------~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~---- 276 (427)
T 3i16_A 215 CFVDNCYGEFMDTKEP-------------TDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGI---- 276 (427)
T ss_dssp EEEECTTTTTSSSSCG-------------GGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTT----
T ss_pred EEEECCCccccccCCc-------------cccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCcc----
Confidence 999 77654422221 23369999999999998732 23666665 4455443210 01111
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCce-----EEEE
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECT-----NISF 550 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~-----~v~F 550 (629)
+ ...+-.+. ..|.+++ |..-+..++++..+++.++++.|++. |+++.. . ... +++|
T Consensus 277 ---------g---~~~~~~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p-~-~~~~~~~~i~~i 337 (427)
T 3i16_A 277 ---------G---GECGSTFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVMP-K-YDEKRSDIIQSI 337 (427)
T ss_dssp ---------G---GGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEES-C-TTSCCSSSCEEE
T ss_pred ---------C---ccCCccHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeecC-C-CCCCCccEEEEE
Confidence 0 01111122 1344444 33455678899999999999999998 778743 2 222 6677
Q ss_pred Ee
Q psy1785 551 WY 552 (629)
Q Consensus 551 ~~ 552 (629)
.+
T Consensus 338 ~l 339 (427)
T 3i16_A 338 KF 339 (427)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 187
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.36 E-value=8.9e-11 Score=127.56 Aligned_cols=304 Identities=8% Similarity=-0.029 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHHHh--CCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH
Q psy1785 253 PVFSLMEEHVLAQMRTIV--GFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA 330 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~--G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~ 330 (629)
+....+++.+.+++. . +.+....++++|+++++..+ .+... |...|++..-+|.++..++.
T Consensus 111 ~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~--~~l~~-------------~gd~Vl~~~p~~~~~~~~~~ 173 (449)
T 3qgu_A 111 QGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI--QMMFG-------------SKPTVAVQDPSYPVYVDTSV 173 (449)
T ss_dssp TCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH--HHHHC-------------SSSCEEEEESCCTHHHHHHH
T ss_pred CCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH--HHHhC-------------CCCEEEEcCCCChhHHHHHH
Confidence 334455555554444 3 34446889999999887654 22221 33456777888999999999
Q ss_pred HcCCCCCC----------EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHc
Q psy1785 331 FEGLGSDN----------VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEY 397 (629)
Q Consensus 331 ~lGlg~~~----------v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~ 397 (629)
..|. + ++.+|.++++.++++ +++. ..+.+|+.+...+.+|.+-| +++|+++|+++
T Consensus 174 ~~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~ 241 (449)
T 3qgu_A 174 MMGM---TGDHNGTGFDGIEYMVCNPDNHFFPD-LSKA--------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN 241 (449)
T ss_dssp HHTC---SCCBCSSSBTTEEEEECCGGGTTCCC-GGGC--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred HcCC---cccccccccceeEEEecccccCCcCC-hhHc--------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC
Confidence 9997 6 999999875433322 1111 13445666678888998855 78888899999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhh-hcCCCCcccc
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTEC-HSASASYLFQ 473 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~-~~~~~~yl~~ 473 (629)
|+++++ +++....-.. ... ....+.-..+.+.++.+++|+++ ....+|+++.+++ ..... ...... +..
T Consensus 242 ~~~li~Dea~~~~~~~~~-~~~----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~-~~~ 314 (449)
T 3qgu_A 242 GSILVYDAAYALYISNPD-CPK----TIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHAD-WNR 314 (449)
T ss_dssp TCEEEEECTTGGGCCCTT-SCS----SGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHH-HHH
T ss_pred CcEEEEEcchHhhhcCCC-CCC----CHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHH-HHH
Confidence 999999 6665332111 000 00111011136889999999998 4466888887653 22210 000000 000
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT---DGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISF 550 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~---~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F 550 (629)
... .+ ......+...++...+.. +.++++.++..+++++|.+.|++. |+++.. +.....+.+
T Consensus 315 ~~~----------~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~ 379 (449)
T 3qgu_A 315 VMT----------TC---FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYG-GDDAPYIWV 379 (449)
T ss_dssp HHH----------HS---CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEE-SSSSSEEEE
T ss_pred Hhh----------cc---cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeC-CCCeeEEEE
Confidence 000 00 001123444444444433 456778888899999999999998 888765 222333434
Q ss_pred EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 551 ~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.+ | +.. ..++.++|.++ |..+....... ...+++|+++. .++++|+.+++.|+++.+
T Consensus 380 ~~-~-~~~---------------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~---~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 380 GF-P-GKP---------------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF---GSRENILEAVRRFKEAYG 438 (449)
T ss_dssp EC-T-TSC---------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHC
T ss_pred EC-C-CCC---------------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHH
Confidence 33 2 211 12456666665 86543322221 11368999974 389999999999998764
No 188
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.35 E-value=2.1e-11 Score=131.58 Aligned_cols=310 Identities=9% Similarity=0.029 Sum_probs=182.1
Q ss_pred cccChhHHHHHHHHHHHHHHHhCC--CCC--CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGF--QGG--DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS 324 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~--~~~--~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S 324 (629)
|........+.+.+.+++....+. +.. +.++|+|||+++..++...... .|...|++..-+|.+
T Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~------------~~gd~Vlv~~p~~~~ 155 (420)
T 4f4e_A 88 YLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL------------NPKAKVAISDPSWEN 155 (420)
T ss_dssp CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCHH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh------------CCCCEEEEeCCCcHh
Confidence 433344444545555554433221 234 6899999999988775432211 133446677788999
Q ss_pred HHHHHHHcCCCCCCEEEEec--CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCC
Q psy1785 325 IKKLAAFEGLGSDNVYLIKT--DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDM 399 (629)
Q Consensus 325 i~kaa~~lGlg~~~v~~V~~--d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~ 399 (629)
....+...|. +++.+|. ++++.+|+++|++.|.+. .....+|+.....+.+|.+ +++++|+++|+++|+
T Consensus 156 ~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~ 229 (420)
T 4f4e_A 156 HRALFDMAGF---EVVAYPYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL 229 (420)
T ss_dssp HHHHHHHTTC---CEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCC---eEEEeeeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 9999999998 9999998 457899999999988632 2245678888888889988 557788999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCccccC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl~~~ 474 (629)
++++ +|+....-......+ +.... +.. +-+.++.+++|.++.| ..+|.+++ .++............+....
T Consensus 230 ~li~De~y~~~~~~~~~~~~~-~~~~~--~~~-~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (420)
T 4f4e_A 230 VPFLDIAYQGFGESIEADAAA-VRLFA--AAN-LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTN 305 (420)
T ss_dssp EEEEEESCTTSSSCTTGGGHH-HHHHH--HTT-CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEccccccccCCcchhhHH-HHHHH--hcC-CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 9999 776544311000000 00010 112 2578889999999843 34787764 33333322111000000000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhc-----ChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCce
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK-----GTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECT 546 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~-----G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~ 546 (629)
..+........+...+... ..+.++++.++..++.+++.+.|+++ +++++.. |..+
T Consensus 306 --------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g 369 (420)
T 4f4e_A 306 --------------YSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN--AQRG 369 (420)
T ss_dssp --------------TSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH--HSCS
T ss_pred --------------cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC--CCcc
Confidence 0011111111122222211 12446777788888999999999987 4665443 4444
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.++|.- +. . ..+.+.+.+.|..+ . + + .|++++ ..++++|+++++.|+++.
T Consensus 370 ~~~~~~----~~----~-----------~~~~~~l~~~gI~v-~--~--~----~Ris~~--~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 370 MFSYSG----LT----S-----------AQVDRLREEFGIYA-V--S--T----GRICVA--ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp SEEECC----CC----H-----------HHHHHHHHHHCEEC-C--T--T----SEEEGG--GCCTTTHHHHHHHHHHHH
T ss_pred EEEEeC----CC----H-----------HHHHHHHHhCCEEe-c--C--C----CeEEEe--cCCHHHHHHHHHHHHHHh
Confidence 444421 10 0 23455666778533 2 1 1 399985 346677999999998764
No 189
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.35 E-value=6.4e-11 Score=127.86 Aligned_cols=311 Identities=12% Similarity=0.010 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHH-HHHHHHHHhhchhHHhcCCCCC---CCeEEEEcCCcchHHHHHHHHcCCC
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANG-YAISCARHHAFPQIKTQGLASC---PRLVLYTSEDAHYSIKKLAAFEGLG 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~-~al~~ar~~~~~~~~~~G~~~~---p~~vv~~s~~~H~Si~kaa~~lGlg 335 (629)
.+..+.+++.+|.+..+.++|+|++++++ ..+..+...- ...|.... ....|++..-+|.....+++..|.
T Consensus 79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~----~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~- 153 (422)
T 3d6k_A 79 ADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWG----NNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF- 153 (422)
T ss_dssp HHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHC----CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCc----ccccccccccCCCCEEEEeCCccHHHHHHHHHcCC-
Confidence 34555677777888778999999999863 3333332220 00010000 022466677788888899999998
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEE-EeeCCCccccccCHH---HHHHHHH-HcCCeEEE--ecCcc
Q psy1785 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVS-ATSGTTVLGAFDPIP---AIADICA-EYDMADSV--TWNPH 408 (629)
Q Consensus 336 ~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vv-at~Gtt~~G~idpl~---ei~~i~~-~~~~~lhV--A~gg~ 408 (629)
+++.||.+++| +|+++|++++.+ ..+.+|+ .....+.+|.+-|.+ +|.++|+ ++++++++ +|...
T Consensus 154 --~~~~v~~~~~g-~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~ 225 (422)
T 3d6k_A 154 --EMINVPMTDEG-PDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALH 225 (422)
T ss_dssp --EEEEEEEETTE-ECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred --EEEecCCCCCC-CCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccc
Confidence 99999998876 999999988853 1244455 466788899998877 6667777 89999999 66531
Q ss_pred ccccccccccccccc-cccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCc
Q psy1785 409 KLLTAPQQCSVFLTR-RNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDK 487 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~-~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~ 487 (629)
.+.........++.. +..+.. +.+.+..+++|+++....+|.++.++ ++..........+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~GlriG~~~~~~-~l~~~l~~~~~~~----------------- 286 (422)
T 3d6k_A 226 TLSDEFPIVHNVIEFAQAAGNP-NRFWFMSSTSKITHAGSGVSFFASSK-ENIEWYASHANVR----------------- 286 (422)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCT-TCEEEEEESTTTSCTTSSCEEEECCH-HHHHHHHHHHHHH-----------------
T ss_pred ccCCCCCCCcChhhHhhccCCC-CcEEEEcChhhhcCcccceEEEEeCH-HHHHHHHHHHHhh-----------------
Confidence 111110000000000 000011 25788889999954335589888764 3443321100000
Q ss_pred cCCCCCCcchHHHHHHHHhcCh-hhHHHHH----HHHHHHHHHHHHHHh----cCCCcEEEccCCCceE-EEEEeeCCCC
Q psy1785 488 HIQCGRKPDVLKFWFMWKAKGT-DGLEAHI----DKSFDNAKYFTDKIR----HRPGFKLVLDEPECTN-ISFWYIPPSL 557 (629)
Q Consensus 488 ~~~~sr~~~al~~w~~l~~~G~-~G~~~~~----~~~~~la~~l~~~L~----~~~g~~l~~~~p~~~~-v~F~~~p~~~ 557 (629)
+ . ....+..+.+..++.. ..+.+++ +...+..+++.+.|. +.+++++.. |..+. +.+++ |..
T Consensus 287 ~--~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~--p~~g~~~~~~~-~~~- 358 (422)
T 3d6k_A 287 G--I--GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTS--PTGGYFISVDV-VPG- 358 (422)
T ss_dssp C--S--CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECC--CSBSSCEEEEE-STT-
T ss_pred c--C--CCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeC--CCcceEEEEEC-CCC-
Confidence 0 0 1123444444444443 2233333 333334445555554 343466543 44333 33443 211
Q ss_pred CCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeee-cC----CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 558 RGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQP-IH----ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~-~~----~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
+ ...+.+.+.++|..+..... .. ...+++|++++ . +++++++.+++.|+++.+
T Consensus 359 ----~-----------~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~-~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 359 ----T-----------ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPS-L-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp ----C-----------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCS-S-SCHHHHHHHHHHHHHHHH
T ss_pred ----C-----------HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecC-C-CCHHHHHHHHHHHHHHHH
Confidence 0 12456677788865432111 11 12368999996 4 899999999999987654
No 190
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.04 E-value=7.5e-14 Score=149.20 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+++.+.+++.+..| .+....++++|+++++..++.+... |...|++...+|.++..++...
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~ 133 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTK--------------EGEAVLINSPVYPPFARSVRLN 133 (392)
Confidence 45566777777777777 3446789999999998877776532 2334666777888888888888
Q ss_pred CCCCCCEEEEecC-CC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--e
Q psy1785 333 GLGSDNVYLIKTD-AR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--T 404 (629)
Q Consensus 333 Glg~~~v~~V~~d-~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A 404 (629)
|. +++.+|.+ ++ +.+|+++|++++.+. .+.+|+.+...+.+|.+-| +++|+++|+++|+++++ +
T Consensus 134 g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~ 205 (392)
T 3b1d_A 134 NR---KLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEI 205 (392)
Confidence 88 88888885 33 359999999988631 1334555677778888754 89999999999999999 6
Q ss_pred cCccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccC
Q psy1785 405 WNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483 (629)
Q Consensus 405 ~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 483 (629)
+.....-..+ ...+..... .. .+.+.++.+++|+++ ..+.+|.+++.++.+..........+
T Consensus 206 ~~~~~~~g~~--~~~~~~~~~-~~-~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~------------- 268 (392)
T 3b1d_A 206 HQDLTLFGHE--HVSFNTVSP-DF-KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN------------- 268 (392)
Confidence 6654322110 000000000 00 125678889999997 44567888876644443221100000
Q ss_pred CCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEccCCCceEEE-EEeeCCCCCCCC
Q psy1785 484 SGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH-RPGFKLVLDEPECTNIS-FWYIPPSLRGKE 561 (629)
Q Consensus 484 ~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~g~~l~~~~p~~~~v~-F~~~p~~~~~~~ 561 (629)
++.+........+..+++ .+.+.+++..++..++.+++.+.|++ .|++++.. |..+.+. +++...+..
T Consensus 269 ----~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~i~~~~~~~~--- 338 (392)
T 3b1d_A 269 ----NHHEVSSLGYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK--PQGTYLIWLDFSDYGLT--- 338 (392)
Confidence 000111111111222232 13455677777788889999999987 78887653 4444433 333211000
Q ss_pred chhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 562 DQADFNELLHKVAPKIKERMM-KSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 562 ~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
..++.++|. ++|.++....... ...+++|++++. ++++|+..++.|+++.+
T Consensus 339 ------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 339 ------------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---PKSLVEEICKRIVCCLP 391 (392)
Confidence 124566675 5676543322221 123589999862 47899999998887643
No 191
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.34 E-value=1.2e-11 Score=132.61 Aligned_cols=286 Identities=9% Similarity=0.002 Sum_probs=173.3
Q ss_pred CCCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCC-----eEEEEcCCcchHHHHHHHHcCCCCCC-EEEEec
Q psy1785 273 QGGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPR-----LVLYTSEDAHYSIKKLAAFEGLGSDN-VYLIKT 344 (629)
Q Consensus 273 ~~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~-----~vv~~s~~~H~Si~kaa~~lGlg~~~-v~~V~~ 344 (629)
+..+.++ |+||++++..++..++.. .|. ..|++..-+|.++..++...|. + ++.+|.
T Consensus 96 ~~~~v~~~~t~gg~~a~~~~~~~~~~~------------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~ 160 (412)
T 1ajs_A 96 QEKRVGGVQSLGGTGALRIGAEFLARW------------YNGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRY 160 (412)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHH------------SSSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEEC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHHh------------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCC---ceeEEEee
Confidence 3467889 999999998886544321 122 3456666788888899999998 8 999998
Q ss_pred C--CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE--ecCcccccc---cc
Q psy1785 345 D--ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV--TWNPHKLLT---AP 414 (629)
Q Consensus 345 d--~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV--A~gg~~l~~---~~ 414 (629)
+ +++.+|+++|++++.+. +....+|+.+...+.+|.+ +++++|+++|+++|+++++ +|.+...-. ..
T Consensus 161 ~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~ 237 (412)
T 1ajs_A 161 WDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDA 237 (412)
T ss_dssp EETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHT
T ss_pred ecCCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccc
Confidence 4 56789999999988652 2235667678888888988 4567899999999999999 665543211 00
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCC-CCccEEEEEe--ccchhhhhhcCCCCccccCCcCCCcccCCCCccCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTA-PQQCSVFLTR--HQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~-P~~~g~ll~r--~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 491 (629)
..+. ... . ...-..++.++||.++. ...+|++++. +++.+..... .+..... .+..+
T Consensus 238 ~~~~---~~~--~-~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~----~~~~~~~----------~~~~~ 297 (412)
T 1ajs_A 238 WAIR---YFV--S-EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLS----QMQKIVR----------VTWSN 297 (412)
T ss_dssp HHHH---HHH--H-TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHH----HHHHHHH----------TTTSS
T ss_pred hHHH---HHh--c-cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHH----HHHHHHh----------cccCC
Confidence 0000 010 0 01124788999999875 2337888882 4332221100 0100000 00011
Q ss_pred CCCcchHHHHHHHHhcC-----hhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEEeeCCCCCCCCch
Q psy1785 492 GRKPDVLKFWFMWKAKG-----TDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFWYIPPSLRGKEDQ 563 (629)
Q Consensus 492 sr~~~al~~w~~l~~~G-----~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~~~p~~~~~~~~~ 563 (629)
........+..+++... .+.+++..++..++.+++.+.|++.. +++++. |..+.+.|.- +.
T Consensus 298 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~----~~----- 366 (412)
T 1ajs_A 298 PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT--DQIGMFSFTG----LN----- 366 (412)
T ss_dssp CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH--HCCSSEEECC----CC-----
T ss_pred CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc--CCCceEEEeC----CC-----
Confidence 11222222222333211 23667788888889999999999874 365443 4444444421 10
Q ss_pred hhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 564 ADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 564 ~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
...+...+.+.|.++ . + .+|++++ . .++++++.+++.|+++.++
T Consensus 367 ----------~~~~~~~l~~~gv~v-~--~------~~Ris~~-~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 367 ----------PKQVEYLINQKHIYL-L--P------SGRINMC-G-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp ----------HHHHHHHHHTTCEEC-C--T------TSEEEGG-G-CCTTTHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhCCEEe-c--C------CcEEEee-e-CCHHHHHHHHHHHHHHHHh
Confidence 013444556778532 2 1 2699996 3 5899999999999987664
No 192
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.34 E-value=1.7e-11 Score=131.61 Aligned_cols=303 Identities=11% Similarity=0.030 Sum_probs=178.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--CCCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVGF--QGGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK 327 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G~--~~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k 327 (629)
.+....+.+.+.+++.+..|. +..+.++ |+||++++..++...+.. .|...|++..-+|.++..
T Consensus 72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~------------~~gd~Vl~~~p~~~~~~~ 139 (412)
T 1yaa_A 72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF------------FPDKLVYLSKPTWANHMA 139 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCTTHHH
T ss_pred CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh------------CCCCEEEEeCCCCccHHH
Confidence 344445555555555433332 3467888 999999988775443321 123345566678888889
Q ss_pred HHHHcCCCCCCEEEEec-CC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEE
Q psy1785 328 LAAFEGLGSDNVYLIKT-DA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADS 402 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~-d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lh 402 (629)
.++..|. +++.+|. ++ ++.+|+++|++++.+. .....+++.+...+.+|.+-| +.+|.++|+++|++++
T Consensus 140 ~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li 213 (412)
T 1yaa_A 140 IFENQGL---KTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIAL 213 (412)
T ss_dssp HHHTTTC---CEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHcCc---eEEEEeeecCCCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 9998898 9999998 53 6789999999998652 112445555888888998854 6678889999999999
Q ss_pred E--ecCcccccc--ccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEE--E----eccc----hhhhhhcC
Q psy1785 403 V--TWNPHKLLT--APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFL--T----RHQS----VLTECHSA 466 (629)
Q Consensus 403 V--A~gg~~l~~--~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll--~----r~~~----~l~~~~~~ 466 (629)
+ ++.....-. .+. .+ +......+-+.+-+.++.+++|.++ |.| +|.++ . +++. +......
T Consensus 214 ~De~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~- 289 (412)
T 1yaa_A 214 FDTAYQGFATGDLDKDA-YA-VRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAK- 289 (412)
T ss_dssp EEESCTTTSSSCHHHHT-HH-HHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH-
T ss_pred EecccccccCCcccchh-HH-HHHHHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHH-
Confidence 9 665432210 000 00 0010000000002467889999997 444 68877 4 2443 3322110
Q ss_pred CCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCC---C
Q psy1785 467 SASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRP---G 535 (629)
Q Consensus 467 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~---g 535 (629)
+... +..+. ..+..+.+..++. .+.+++..++..++.+++.+.|++.+ +
T Consensus 290 ---~~~~--------------~~~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 349 (412)
T 1yaa_A 290 ---IIRS--------------EVSNP---PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGN 349 (412)
T ss_dssp ---HHHT--------------TTSSC---CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred ---HHhh--------------ccCCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 0000 00011 1222222222221 23677778888889999999998874 3
Q ss_pred cEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHH
Q psy1785 536 FKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDM 615 (629)
Q Consensus 536 ~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edi 615 (629)
+++.. |..+.++|. . +. . ..+...+.+.|..+ .. ++|++++ . .+++++
T Consensus 350 ~~~~~--~~~~~~~~~-~---~~----~-----------~~~~~~l~~~gi~v-~~--------~~Ris~~-~-~~~~~i 397 (412)
T 1yaa_A 350 WDHIV--NQCGMFSFT-G---LT----P-----------QMVKRLEETHAVYL-VA--------SGRASIA-G-LNQGNV 397 (412)
T ss_dssp CTHHH--HCCSSEEEC-C---CC----H-----------HHHHHHHHHHCEEC-CT--------TSEEEGG-G-CCTTTH
T ss_pred eeeec--cCceEEEee-C---CC----H-----------HHHHHHHHhCCEEe-cc--------CcEEEEc-c-CCHhHH
Confidence 66543 444444432 1 10 0 13444445677532 21 4799996 3 589999
Q ss_pred HHHHHHHHHHhhc
Q psy1785 616 DYFIDEIERLGHD 628 (629)
Q Consensus 616 d~l~~~i~~l~~~ 628 (629)
+++++.|+++.+.
T Consensus 398 ~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 398 EYVAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 193
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.34 E-value=1.2e-10 Score=125.16 Aligned_cols=311 Identities=11% Similarity=-0.027 Sum_probs=181.8
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKK 327 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~k 327 (629)
|...+....+.+.+.+++.+..+.+. .+.++|+||++++..++.+.. .|...|++..-+|.+...
T Consensus 75 Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~--------------~~gd~Vl~~~p~~~~~~~ 140 (413)
T 3t18_A 75 YAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYL--------------DEGDPLICHDYYWAPYRK 140 (413)
T ss_dssp CCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHC--------------CSSCEEEEESSCCTHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhc--------------CCCCEEEECCCCcccHHH
Confidence 33334455555666666655544321 278999999999887766432 134456777788999999
Q ss_pred HHHHcCCCCCCEEEEec-CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeC-CCccccccCHHHHHHH---HH------H
Q psy1785 328 LAAFEGLGSDNVYLIKT-DARGRMLPESLRGEIQRTLAEGAVPFMVSATSG-TTVLGAFDPIPAIADI---CA------E 396 (629)
Q Consensus 328 aa~~lGlg~~~v~~V~~-d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~G-tt~~G~idpl~ei~~i---~~------~ 396 (629)
++...|. +++.+|. ++++.+|+++|++++.+....+ ...+|+.... .+.+|.+-|.+++.++ |+ +
T Consensus 141 ~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~ 216 (413)
T 3t18_A 141 ICEEFGR---NFKTFEFFTDDFAFNIDVYKEAIDEGIRDS-DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKD 216 (413)
T ss_dssp HHHHHTC---EEEEECCBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHhCC---eEEEeeccCCCCCcCHHHHHHHHHHHhhcC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccC
Confidence 9999999 9999998 4557999999999997643222 2335555555 7889999887766654 55 8
Q ss_pred cCCeEEE--ecCcccccccccccccccc-ccccccCCc-ceEEEeCCCCCCCCC-CccEEEEEe--ccchhhhhhcCCCC
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLT-RRNYVIEVV-ADSVTWNPHKLLTAP-QQCSVFLTR--HQSVLTECHSASAS 469 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~-~~~~~i~~g-aDsv~~~~HK~l~~P-~~~g~ll~r--~~~~l~~~~~~~~~ 469 (629)
+++++++ +|.+...... ....++. .. ++... ...++.+++|.++.| ..+|.++.. ++++....... ..
T Consensus 217 ~~~~li~De~y~~~~~~~~--~~~~~~~~~~--~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~-~~ 291 (413)
T 3t18_A 217 KKITLIVDVAYLEFAGDGD--QQRKFFEKFS--NLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEAS-LA 291 (413)
T ss_dssp CEEEEEEECTTGGGSSSSS--TTTGGGGGGT--TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHH-HH
T ss_pred CcEEEEEecccccccCChh--hHHHHHHHHh--hcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHH-HH
Confidence 9999999 6654432211 0000101 11 11110 126677999999854 447887762 44444332110 00
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChh-------hHHHHHHHHHHHHHHHHHHHhcCCCcEEEccC
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTD-------GLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDE 542 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~-------G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~ 542 (629)
+.... .......+...++...+... .++++.++..++.+++.+.|++. |+++..
T Consensus 292 ~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-- 352 (413)
T 3t18_A 292 HSARC----------------NWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMIP-- 352 (413)
T ss_dssp HHHHH----------------HTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBC--
T ss_pred Hhhhc----------------cccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccC--
Confidence 10000 00012334444444444332 23345566777888899999887 887653
Q ss_pred CCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 543 PECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 543 p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
|..+.+.+ .... + ..++.+.|.++|..+.. + .+++|++++ ..++++.++.+.+.+
T Consensus 353 ~~~~~~~~-~~~~------~-----------~~~~~~~l~~~gv~v~~-----g-~~~iRis~~-~~~~~~~l~~l~~~l 407 (413)
T 3t18_A 353 YFGGFFTF-IPTD------K-----------AFDIVKDLEKENIFTIP-----S-AKGIRVAIC-GVGEEKIPKLVQRLA 407 (413)
T ss_dssp CCSSSCEE-EECS------C-----------HHHHHHHHHHTTEECEE-----C-SSEEEECTT-TSCGGGHHHHHHHHH
T ss_pred CCceEEEE-eCCC------C-----------HHHHHHHHHhCCEEEec-----C-CCceEEEEe-eCCHHHHHHHHHHHH
Confidence 44443332 2110 0 12456678788865432 2 258999986 444444477777776
Q ss_pred HHHh
Q psy1785 623 ERLG 626 (629)
Q Consensus 623 ~~l~ 626 (629)
+++.
T Consensus 408 ~~~~ 411 (413)
T 3t18_A 408 FYTN 411 (413)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 194
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.33 E-value=7.2e-10 Score=120.49 Aligned_cols=321 Identities=11% Similarity=0.062 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC-----
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL----- 334 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl----- 334 (629)
.++.+.++++++.+....++++|||+++..++.+++... +..|-+ ....+|+.+...|.+...+....|.
T Consensus 96 ~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 170 (449)
T 3a8u_X 96 FQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYW----RLKGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRK 170 (449)
T ss_dssp HHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEECCCcCCCChhhhhccCChhhcc
Confidence 455667788876655678999999999999998877521 122311 0134566678888776666665541
Q ss_pred --C--CCCEEEEecCCCC-----CCC--------HHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHH
Q psy1785 335 --G--SDNVYLIKTDARG-----RML--------PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADI 393 (629)
Q Consensus 335 --g--~~~v~~V~~d~~g-----~~d--------~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i 393 (629)
+ ...+..++++... .+| +++|+++|.+.. ...+.+|++....+.+|.+-| +++|+++
T Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 248 (449)
T 3a8u_X 171 LFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI 248 (449)
T ss_dssp TTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred ccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence 1 1256777764321 256 999999887421 013455665554455898888 9999999
Q ss_pred HHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCc
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASY 470 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~y 470 (629)
|++||+++++ ++.+.........+ ...++ ..|.++++ |+++.- +..|.+++++ ++..........
T Consensus 249 ~~~~~~~li~Dev~~~~g~~g~~~~~------~~~~~--~~di~s~s--K~l~~G~~~~G~~~~~~-~~~~~l~~~~~~- 316 (449)
T 3a8u_X 249 CNQHNILLVFDEVITGFGRTGSMFGA------DSFGV--TPDLMCIA--KQVTNGAIPMGAVIAST-EIYQTFMNQPTP- 316 (449)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHH------HHHTC--CCSEEEEC--GGGGTTSSCCEEEEEEH-HHHHHHHTCSSC-
T ss_pred HHHhCCEEEEeccccCccccCcchhh------hhcCC--CCCEEEEc--ccccCCCCceEEEEECH-HHHHHhhccCcc-
Confidence 9999999999 66432211110000 11112 26877664 988752 3488888875 444332111000
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEcc-CCCceEEE
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLD-EPECTNIS 549 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~-~p~~~~v~ 549 (629)
.+.. . +..+ .+. ++.......+..+++.+..+ +..++..++.+++++.|++++++.++.. .+..+.+.
T Consensus 317 -~~~~----~-~~~~-~t~-~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~ 385 (449)
T 3a8u_X 317 -EYAV----E-FPHG-YTY-SAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGA 385 (449)
T ss_dssp -TTSC----S-SCCC-CTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEE
T ss_pred -cccc----c-cccc-CCC-cccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEE
Confidence 0000 0 0000 000 11112222333344443333 3566777788899999887533322210 12334455
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.+.. . ... .. ..++.+.|.++|.++ ... + +++|+++. ..+|++||+++++.|+++.++
T Consensus 386 i~~~~~~-~----~~~----~~--~~~~~~~l~~~Gv~v-~~~---g--~~iRis~~-~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 386 IQIAPRD-G----DAI----VR--PFEAGMALWKAGFYV-RFG---G--DTLQFGPT-FNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp EEECCBT-T----BSS----HH--HHHHHHHHHHHTEEC-EEE---T--TEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCc-c----ccc----cc--HHHHHHHHHHCCcEE-ecC---C--CEEEEECC-CcCCHHHHHHHHHHHHHHHHH
Confidence 5543211 0 000 00 014677787888643 221 2 58999985 789999999999999987654
No 195
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.33 E-value=6.3e-11 Score=123.58 Aligned_cols=269 Identities=8% Similarity=0.058 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhC---CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC
Q psy1785 260 EHVLAQMRTIVG---FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336 (629)
Q Consensus 260 ~~~~~~l~~l~G---~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~ 336 (629)
.++.+.++++++ .+..+.++++|+++++..++.+. | ..|++. -+|.++...++..|.
T Consensus 59 ~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-----------g------d~Vl~~-p~y~~~~~~~~~~g~-- 118 (335)
T 1uu1_A 59 EELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-----------D------RSVFFP-PTYSCYRIFAKAVGA-- 118 (335)
T ss_dssp HHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS-----------S------EEEECS-SSCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh-----------C------CcEEEC-CCcHHHHHHHHHcCC--
Confidence 455666788887 66678999999999987766543 2 246667 888888888999998
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccccccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAP 414 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~ 414 (629)
+++.+|.++++.+|+++| ..+.+|+.+...+.+|.+-|.+++.++++..+ ++++ ++..... ..
T Consensus 119 -~~~~v~~~~~~~~d~~~l-----------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~-~~- 183 (335)
T 1uu1_A 119 -KFLEVPLTKDLRIPEVNV-----------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHG-ES- 183 (335)
T ss_dssp -EEEECCCCTTSCCCCCCC-----------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHC-CC-
T ss_pred -eEEEeccCCCCCCCHHHc-----------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcc-hh-
Confidence 899999987778888876 13456666778899999999999999999988 8877 5553211 01
Q ss_pred ccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCC
Q psy1785 415 QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGR 493 (629)
Q Consensus 415 ~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 493 (629)
++.. ++. .+.+.++.+++|+++.| ..+|++++++ ++.......... + +
T Consensus 184 -----~~~~--~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~-----------------~---~-- 232 (335)
T 1uu1_A 184 -----YVDF--LKK-YENLAVIRTFSKAFSLAAQRVGYVVASE-KFIDAYNRVRLP-----------------F---N-- 232 (335)
T ss_dssp -----CGGG--GGT-CSSEEEEEESTTTTTCGGGCCEEEEECH-HHHHHHHHHSCT-----------------T---C--
T ss_pred -----HHHH--hhh-CCCEEEEecchhhcCCcccCeEEEEeCH-HHHHHHHHhcCC-----------------C---C--
Confidence 0010 011 13678899999999744 3478888844 444332111100 0 1
Q ss_pred CcchHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhh
Q psy1785 494 KPDVLKFWFMWKAKG-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHK 572 (629)
Q Consensus 494 ~~~al~~w~~l~~~G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~ 572 (629)
...+..+.+...+. .+.++++.++..++++++.+.|++. |+++. ++..+.+.+++. . ..
T Consensus 233 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~-~----------~~----- 292 (335)
T 1uu1_A 233 -VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT--DSRGNFVFVFME-K----------EE----- 292 (335)
T ss_dssp -SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCCSSEEEEECC-T----------HH-----
T ss_pred -cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc--CCCCeEEEEECC-C----------CC-----
Confidence 12222333222222 2467788888889999999999987 77643 334444444431 1 00
Q ss_pred HHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 573 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 573 ~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..++.+.|.++|..+ .. ..+++|++++ +++|++.+++.|+++
T Consensus 293 -~~~~~~~l~~~gi~v-~~-----~~~~iRis~~----~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 293 -KERLLEHLRTKNVAV-RS-----FREGVRITIG----KREENDMILRELEVF 334 (335)
T ss_dssp -HHHHHHHHHHHTEEE-EE-----ETTEEEEECC----CHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHCCEEE-EE-----CCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 135677788888643 32 1258999985 368899999988753
No 196
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.32 E-value=2.4e-10 Score=123.61 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC-----
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL----- 334 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl----- 334 (629)
.++.+.++++++.+....++++||++++..++..++... | ...+++....-|.+...+....+.
T Consensus 88 ~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 156 (433)
T 1zod_A 88 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT-------G----KYEIVGFAQSWHGMTGAAASATYSAGRKG 156 (433)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH-------T----CCEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred HHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh-------C----CCeEEEECCCcCCCChhHHhhcCCccccc
Confidence 455567888888766789999999999999998876421 1 234566666778766555443221
Q ss_pred ---CCCCEEEEecCCC------------CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q psy1785 335 ---GSDNVYLIKTDAR------------GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICA 395 (629)
Q Consensus 335 ---g~~~v~~V~~d~~------------g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~ 395 (629)
-...++.++++.. +.+|+++|+++|.+. ....+.+|++.-..+.+|.+-| +++|+++|+
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 157 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred cCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 0125677765432 124689999888642 1123445555443345787666 999999999
Q ss_pred HcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCcccc
Q psy1785 396 EYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQ 473 (629)
Q Consensus 396 ~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~ 473 (629)
+||+++++ ++.+.........+ .. .++ ..|.++++ |.++.++..|+++.++ ++...... . .+..
T Consensus 235 ~~~~~li~DEv~~~~g~~g~~~~~----~~--~~~--~~di~s~s--K~~~~G~~ig~~~~~~-~~~~~~~~-~-~~~~- 300 (433)
T 1zod_A 235 ARGMLLILDEAQTGVGRTGTMFAC----QR--DGV--TPDILTLS--KTLGAGLPLAAIVTSA-AIEERAHE-L-GYLF- 300 (433)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTH----HH--HTC--CCSEEEEC--HHHHTTSSCEEEEECH-HHHHHHHH-T-TCCC-
T ss_pred HhCCEEEEeccccCCCcCchHhHH----hh--cCC--CCCEEEec--ccccCCCCeeEEEEhH-HHHHhhcc-C-CCCC-
Confidence 99999999 66543211110000 11 011 26777665 9888777789998876 44432211 0 0110
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCCcEEEccCCCceEEE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPGFKLVLDEPECTNIS 549 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g~~l~~~~p~~~~v~ 549 (629)
.+ + .++.......+..+++.+..++ ..++..++.+++++.|++ .+.+..+. +..+.+.
T Consensus 301 ----------~~--t-~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~--~~g~~~~ 362 (433)
T 1zod_A 301 ----------YT--T-HVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVR--GRGLLLG 362 (433)
T ss_dssp ----------CC--T-TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEEE
T ss_pred ----------CC--C-CCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--EEEEEEE
Confidence 00 0 0111222223334444333333 345566677777777765 34443332 3334445
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+......+.. . . ....++.+.|.++|.++...... +..+++|++++ ..+|++||+.+++.|+++.++
T Consensus 363 i~~~~~~~~~~~-~-~------~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~lRi~~~-~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 363 VEIVKDRRTKEP-A-D------GLGAKITRECMNLGLSMNIVQLP-GMGGVFRIAPP-LTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp EEEEEETTTTEE-C-T------THHHHHHHHHHHTTEECCEECCT-TSCCEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccCC-C-h------HHHHHHHHHHHHCCCeEeccCCC-CCCCEEEEECC-cCCCHHHHHHHHHHHHHHHHH
Confidence 554321000000 0 0 01235677888888654322221 22268999984 889999999999999887653
No 197
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.32 E-value=1.8e-10 Score=122.57 Aligned_cols=322 Identities=15% Similarity=0.115 Sum_probs=186.4
Q ss_pred ccChhHHHHHHHHHHHHHHHhCCCCC-Ce--EEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEE---cCCcch
Q psy1785 250 EVSPVFSLMEEHVLAQMRTIVGFQGG-DG--IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYT---SEDAHY 323 (629)
Q Consensus 250 ~~~p~~~~~E~~~~~~l~~l~G~~~~-~g--~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~---s~~~H~ 323 (629)
.....+..+|.-+++...++||.+.+ ++ +-..+|+.||+.+..+..+ |...|+. +.-.|.
T Consensus 93 gGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--------------PGD~ilg~~l~~GGHl 158 (490)
T 3ou5_A 93 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--------------PHDRIMGLDLPDGGHL 158 (490)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---------------CCCEECBC-------
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--------------CCCEEEecccCCCCcc
Confidence 34566789999999999999999864 22 3344889999877665443 2222222 222233
Q ss_pred HHH-----HHHHHcCCCCCCEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 324 SIK-----KLAAFEGLGSDNVYLIKTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 324 Si~-----kaa~~lGlg~~~v~~V~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
+-- +-..+.|.- -+++..++| ++|.+|.+.|++...+. +|.+|+ +|.+.+--.-|++++++||++.
T Consensus 159 tHg~~~~~~~v~~sg~~-~~~~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklIi--~G~SaY~r~id~~~~reIAd~v 230 (490)
T 3ou5_A 159 THGYMSDVKRISATSIF-FESMPYKLNPKTGLIDYNQLALTARLF-----RPRLII--AGTSAYARLIDYARMREVCDEV 230 (490)
T ss_dssp ----------------------CBCEETTTTEECHHHHHHHHHHH-----CCSEEE--ECCSSCCSCCCHHHHHHHHHHH
T ss_pred cccccCCCccccccccc-ccccccccCCCCCcccHHHHHHHHhhc-----CCCeEE--ECCccCccccCHHHHHHHHhhc
Confidence 322 111223320 033344455 56899999999988774 577775 4677777888999999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhh-hcCCCCccccC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC-HSASASYLFQK 474 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~-~~~~~~yl~~~ 474 (629)
|.++.+ |+=.+..... .+.. .++. ||+++.+.||.|.+|. .|++++++...-... ......|-...
T Consensus 231 GA~Lm~DmAHiaGLVA~g--------~~ps-P~~~-ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~k 299 (490)
T 3ou5_A 231 KAHLLADMAHISGLVAAK--------VIPS-PFKH-ADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFED 299 (490)
T ss_dssp TCEEEEECGGGHHHHHTT--------SSCC-GGGT-CSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHH
T ss_pred ccEEEechhhhhhhhccc--------ccCC-cccc-ceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHH
Confidence 999999 4422222211 0111 1566 9999999999999998 588888873100000 00000000000
Q ss_pred CcCCCcccCCCCccCCCCCCcc-hHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEee
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPD-VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYI 553 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~-al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~ 553 (629)
. -+. ..-.++|++-... ..+...+++..-...+++..++.+++|+.|.+.|.+. ||+++..-.+...+...+.
T Consensus 300 k--in~---aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~ 373 (490)
T 3ou5_A 300 R--INF---AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLR 373 (490)
T ss_dssp H--HHH---HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred H--HHh---hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEecc
Confidence 0 000 0001235554442 2333334444335667889999999999999999997 9999863345555666665
Q ss_pred CCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCC-----ccceEEEee---cCCCCCHHHHHHHHHHHHHH
Q psy1785 554 PPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHA-----LPNFFRLVL---QNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 554 p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~-----~~~~lR~~~---~n~~~t~edid~l~~~i~~l 625 (629)
+.++.| .+..+.|-+.|..+ ....+++ .+.-||+.. +.....++|++.+.+.|.++
T Consensus 374 ~~g~tG---------------~~ae~~Le~agItv-NkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~ 437 (490)
T 3ou5_A 374 PKGLDG---------------ARAERVLELVSITA-NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp GGTCCH---------------HHHHHHHHHTTEEC-EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCH---------------HHHHHHHHHcCcEE-CCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 554433 23445566677532 2211211 123599987 34667899999999888764
Q ss_pred h
Q psy1785 626 G 626 (629)
Q Consensus 626 ~ 626 (629)
.
T Consensus 438 l 438 (490)
T 3ou5_A 438 V 438 (490)
T ss_dssp H
T ss_pred H
Confidence 3
No 198
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.31 E-value=4.2e-10 Score=122.62 Aligned_cols=297 Identities=11% Similarity=0.054 Sum_probs=174.4
Q ss_pred HHHHHHHHHh-CCC-----CCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH--
Q psy1785 261 HVLAQMRTIV-GFQ-----GGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA-- 330 (629)
Q Consensus 261 ~~~~~l~~l~-G~~-----~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~-- 330 (629)
+..+.+++++ |.+ ....++ |+|||+++..+....... .|...|+++.-+|.+....++
T Consensus 98 ~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~------------~~gd~Vlv~~p~~~~~~~~~~~~ 165 (448)
T 3meb_A 98 LFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW------------MPKAEFYMPSTTWPNHYGIYDKV 165 (448)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------------CTTCCEEEESSCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh------------CCCCEEEECCCCCHhHHHHHHhh
Confidence 3444455554 776 467888 999999987654322221 133457778888999988888
Q ss_pred --HcCCCCCCEEEEec-CCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEE
Q psy1785 331 --FEGLGSDNVYLIKT-DAR--GRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADS 402 (629)
Q Consensus 331 --~lGlg~~~v~~V~~-d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lh 402 (629)
..|. +++.+|. +++ +.+|+++|++++.+. .....+|+.....+.+|.+-+ +++|+++|+++|++++
T Consensus 166 ~~~~G~---~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li 239 (448)
T 3meb_A 166 FNKLKV---PYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAF 239 (448)
T ss_dssp HCTTTS---CCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHhCCC---eEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 8888 9999998 664 799999999998752 223567777778888988765 5569999999999999
Q ss_pred E--ecCcccccccccccccccccccc-ccCCcceEEEeCCCCCCCCC-CccEEE--EE--------eccchhhhhhcCCC
Q psy1785 403 V--TWNPHKLLTAPQQCSVFLTRRNY-VIEVVADSVTWNPHKLLTAP-QQCSVF--LT--------RHQSVLTECHSASA 468 (629)
Q Consensus 403 V--A~gg~~l~~~~~~~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P-~~~g~l--l~--------r~~~~l~~~~~~~~ 468 (629)
+ +|.+...-....+.. ..+.+ .... -..++.++||.++.| ..+|.+ ++ .++.........-.
T Consensus 240 ~Deay~~~~~~~~~~~~~---~~~~~~~~~~-~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~ 315 (448)
T 3meb_A 240 FDSAYQGFATGSFEADAF---AVRMFVDAGV-EVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT 315 (448)
T ss_dssp EEESCTTTSSSCHHHHTH---HHHHHHHTTC-CEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH
T ss_pred EecccccccCCCcccCch---hHHHHhhcCC-cEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH
Confidence 9 766543211000000 00100 0111 236688999999854 336776 45 34311111100000
Q ss_pred CccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcCh--------hhHHHHHHHHHHHHHHHHHHHhcC--CC---
Q psy1785 469 SYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT--------DGLEAHIDKSFDNAKYFTDKIRHR--PG--- 535 (629)
Q Consensus 469 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~--------~G~~~~~~~~~~la~~l~~~L~~~--~g--- 535 (629)
...... .+ ....+..+.+...+.. +.+++..++..++.++|.+.|+++ ++
T Consensus 316 ~~~~~~----------------~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 378 (448)
T 3meb_A 316 LQIRKT----------------WS-MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGS 378 (448)
T ss_dssp HHHHTT----------------TS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTT
T ss_pred HHHhcc----------------cC-CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCc
Confidence 000000 00 1122333333333322 346677788888999999999887 45
Q ss_pred ---cEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHH-HhcCcEEEeeeecCCccceEEEeecCCCCC
Q psy1785 536 ---FKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERM-MKSGSMMITYQPIHALPNFFRLVLQNSALD 611 (629)
Q Consensus 536 ---~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t 611 (629)
++... |..+.++|.- +. .++..++ .+.|..+ .. |. .|++++ ..+
T Consensus 379 ~~~~~~~~--~~~g~~~~~~----~~----------------~~~~~~ll~~~gV~v-~~----G~---gRis~a--~~~ 426 (448)
T 3meb_A 379 KGTWDHIL--TAIGMFTFTG----LT----------------PEHVDYLKEKWSIYL-VK----AG---GRMSMC--GLT 426 (448)
T ss_dssp TCCCTHHH--HCCSSEEECC----CC----------------HHHHHHHHHHHCEEE-CS----GG---GEEEGG--GCC
T ss_pred ccccceeC--CCceEEEecC----CC----------------HHHHHHHHHhCCEEE-eC----CC---cEEEEe--cCC
Confidence 43332 4444444421 10 1223344 4567543 21 11 299985 335
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy1785 612 HSDMDYFIDEIERLGHD 628 (629)
Q Consensus 612 ~edid~l~~~i~~l~~~ 628 (629)
+++|+++++.|+++.+.
T Consensus 427 ~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 427 ESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56699999999887653
No 199
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.31 E-value=2.5e-11 Score=129.40 Aligned_cols=298 Identities=12% Similarity=0.040 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVGFQGGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~~~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+.+.+.+++... +.+..+.++ |+|||+++..++...+.. .|...|++..-+|.++..++...
T Consensus 71 ~~~lr~~la~~~~~~-~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------------~~gd~vl~~~p~~~~~~~~~~~~ 137 (394)
T 2ay1_A 71 EPEFQKAMGELILGD-GLKSETTATLATVGGTGALRQALELARMA------------NPDLRVFVSDPTWPNHVSIMNFM 137 (394)
T ss_dssp CHHHHHHHHHHHHGG-GCCGGGEEEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC-CCCcccEEEEecCCchhHHHHHHHHHHhc------------CCCCEEEEcCCCChhHHHHHHHc
Confidence 344444444443211 224457788 999999998888766542 12223556667888888899999
Q ss_pred CCCCCCEEEEecC--CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ec
Q psy1785 333 GLGSDNVYLIKTD--ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TW 405 (629)
Q Consensus 333 Glg~~~v~~V~~d--~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~ 405 (629)
|. +++.+|.+ +++.+|+++|++++.+. .....+++.....+.+|.+-| +++|+++|+++|+++++ ++
T Consensus 138 g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 211 (394)
T 2ay1_A 138 GL---PVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAY 211 (394)
T ss_dssp TC---CEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CC---ceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCc
Confidence 98 99999986 56789999999988641 123456666888888898865 56788999999999999 66
Q ss_pred Ccccccc--ccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCccccCCcCCCc
Q psy1785 406 NPHKLLT--APQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYLFQKDKFYDT 480 (629)
Q Consensus 406 gg~~l~~--~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl~~~~~~~~~ 480 (629)
.....-. ....+. .... ... -..++.+++|+++.| ..+|.+++ .+++.+..... .+.....
T Consensus 212 ~~~~~~~~~~~~~~~---~~~~--~~~-~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~----~~~~~~~---- 277 (394)
T 2ay1_A 212 QGFGDGLEEDAAGTR---LIAS--RIP-EVLIAASCSKNFGIYRERTGCLLALCADAATRELAQG----AMAFLNR---- 277 (394)
T ss_dssp TTSSSCHHHHHHHHH---HHHH--HCS-SEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHH----HHHHHHH----
T ss_pred cccccCcccchHHHH---HHhh--cCC-CEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHH----HHHHHHh----
Confidence 5533210 000000 0110 111 235677899999743 34688887 33333221110 0000000
Q ss_pred ccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEE
Q psy1785 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNIS 549 (629)
Q Consensus 481 ~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~ 549 (629)
.+..+. ..+..+.+.+.+. .+.+++..++..++.+++.+.|++.. ++++.. |..+.++
T Consensus 278 ------~~~~~~---~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~ 346 (394)
T 2ay1_A 278 ------QTYSFP---PFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVA--EHRGMFS 346 (394)
T ss_dssp ------TTTSSC---CCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHH--HCCSSEE
T ss_pred ------hhcCCC---ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEc--CCceEEE
Confidence 000011 1122222222221 24577777888888999999998763 365433 3434443
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
+ .. +. . ..+.+.+.+.|.++ .. .+|+++. .++++|++++++.|++++
T Consensus 347 ~-~~---~~----~-----------~~~~~~l~~~gi~v-~~--------~~Ris~~--~~~~~~i~~~~~~l~~~~ 393 (394)
T 2ay1_A 347 R-LG---AT----P-----------EQVKRIKEEFGIYM-VG--------DSRINIA--GLNDNTIPILARAIIEVG 393 (394)
T ss_dssp E-CC---CC----H-----------HHHHHHHHHHCEEC-CT--------TCEEEGG--GCCTTTHHHHHHHHHHHT
T ss_pred e-eC---CC----H-----------HHHHHHHHhCCEEe-cC--------CCeEEee--cCCHhhHHHHHHHHHHcc
Confidence 3 21 10 0 13455666778532 21 2699985 479999999999998874
No 200
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.31 E-value=2.1e-11 Score=131.42 Aligned_cols=219 Identities=10% Similarity=0.024 Sum_probs=147.8
Q ss_pred HHHHHHHHHhCCCCCCeEE---eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcC-CcchHHHHH--------
Q psy1785 261 HVLAQMRTIVGFQGGDGIF---CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSE-DAHYSIKKL-------- 328 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~---~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~-~~H~Si~ka-------- 328 (629)
++.+.+++++|.+. ..+ +++||++|..++.+.. .|...|+++. ..|......
T Consensus 63 ~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all--------------~~GD~Vl~~~~~~y~~~~~~~~~~g~~~ 126 (409)
T 3jzl_A 63 TLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGIL--------------RPDDELLYITGQPYDTLEEIVGIRKQGQ 126 (409)
T ss_dssp HHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHC--------------CTTCEEEECSSSCCTTHHHHHTSSSSSS
T ss_pred HHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhc--------------CCCCEEEEeCCCCcHhHHHHHhcccchh
Confidence 34456889999763 455 7899999877766432 1344566665 677766643
Q ss_pred --HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--cCCe
Q psy1785 329 --AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATS----GTTVLGAFDPIPAIADICAE--YDMA 400 (629)
Q Consensus 329 --a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~----Gtt~~G~idpl~ei~~i~~~--~~~~ 400 (629)
++..|+ +++.++.+++|.+|+++|+++|.+ .+.+|.... .++.+|.+.|+++|+++|++ +|++
T Consensus 127 ~~l~~~G~---~~~~v~~~~~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~ 197 (409)
T 3jzl_A 127 GSLKDFHI---GYSSVPLLENGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVI 197 (409)
T ss_dssp SCTGGGTC---EEEECCCCTTSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCE
T ss_pred hHHHHcCC---EEEEeCCCCCCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCE
Confidence 345577 899999999999999999998853 356777777 78999999999999999999 9999
Q ss_pred EEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCc--cEEEEEeccchhhhhhcC-CCCccccCC
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQ--CSVFLTRHQSVLTECHSA-SASYLFQKD 475 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~--~g~ll~r~~~~l~~~~~~-~~~yl~~~~ 475 (629)
++| +|+.......| .+.|+|.++.++||+++.+.. .|++.. ++++.+..... ...++..
T Consensus 198 livD~a~~~~~~~~~p-------------~~~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~-- 261 (409)
T 3jzl_A 198 VFVDNCYGEFVEYQEP-------------PEVGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGR-- 261 (409)
T ss_dssp EEEECTTCTTTSSCCS-------------GGGTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGG--
T ss_pred EEEeCCcccccccCCc-------------cccCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhccccccc--
Confidence 999 77654322111 233699999999999987532 355555 44555443211 1111210
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV 539 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~ 539 (629)
.++-.... .|.+++ |..-+..++++..+++.++++.|+++ |+++.
T Consensus 262 --------------~~g~~~~~--~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~ 306 (409)
T 3jzl_A 262 --------------EAGASLYS--LLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEAD 306 (409)
T ss_dssp --------------GCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred --------------cccccHHH--HHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 01111111 233333 23445678888999999999999998 78874
No 201
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.30 E-value=1.1e-09 Score=119.61 Aligned_cols=327 Identities=13% Similarity=0.001 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC---
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL--- 334 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl--- 334 (629)
...++.++++++++.+.....|++||++++..++.+++... ...|.++ ...+|.....-|.+..-+...-|.
T Consensus 96 ~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~----~~~g~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~ 170 (460)
T 3gju_A 96 ASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN----NVLGRPE-KKKIISRWRGYHGSGVMTGSLTGLDLF 170 (460)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTCCCCSSHHHHHHCCCGGG
T ss_pred HHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHH----HhcCCCC-CCEEEEECCCcCCCCHHHhhccCCccc
Confidence 34556677888776555679999999999999999988642 1223211 244666677778766555554332
Q ss_pred ------CCCCEEEEecCC-----CCCCC--------HHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHH
Q psy1785 335 ------GSDNVYLIKTDA-----RGRML--------PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIA 391 (629)
Q Consensus 335 ------g~~~v~~V~~d~-----~g~~d--------~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~ 391 (629)
....+..++... +..++ +++|+++|.+.. .....+|++.-..+..|.+-| +++|+
T Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~ 248 (460)
T 3gju_A 171 HNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQ 248 (460)
T ss_dssp TTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred ccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHH
Confidence 122567777432 11233 578888876421 123456666665666677666 99999
Q ss_pred HHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcC--
Q psy1785 392 DICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSA-- 466 (629)
Q Consensus 392 ~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~-- 466 (629)
++|++||+++++ ++.+.........+ . ..++ ..|.++++ |.++.. ...|.++.+++ +.......
T Consensus 249 ~l~~~~~~llI~DEv~~g~gr~g~~~~~----~--~~~~--~pdi~t~s--K~l~gG~~~lg~v~~~~~-i~~~~~~~~~ 317 (460)
T 3gju_A 249 AVLKKYDVLLVADEVVTGFGRLGTMFGS----D--HYGI--KPDLITIA--KGLTSAYAPLSGVIVADR-VWQVLVQGSD 317 (460)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHH----H--HHTC--CCSEEEEC--GGGTTTSSCCEEEEEEHH-HHHHHHHHHH
T ss_pred HHHHHcCCEEEEeccccCCCcccccchH----h--hcCC--CCCeeeee--hhhcCCCCCeEEEEECHH-HHHHHhcccc
Confidence 999999999999 66653222110000 1 1122 26788876 998875 46788887663 33322100
Q ss_pred CCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHH-HHHHHHHHHHHHhcCCCcEEEccCCCc
Q psy1785 467 SASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDK-SFDNAKYFTDKIRHRPGFKLVLDEPEC 545 (629)
Q Consensus 467 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~-~~~la~~l~~~L~~~~g~~l~~~~p~~ 545 (629)
....+... . + -++..........+++.+..+++.+.+++ ...+.+.|.+.+.+.+.+..+. +.-
T Consensus 318 ~~~~~~~~----------~--t-~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~g 382 (460)
T 3gju_A 318 KLGSLGHG----------W--T-YSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR--GDG 382 (460)
T ss_dssp HHCSCSCC----------C--T-TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE--EET
T ss_pred cccccccC----------C--C-CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--eee
Confidence 00000000 0 0 01222222333344444333443333222 2233444545555666555443 333
Q ss_pred eEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 546 TNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 546 ~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..+.+.+.+.......-.. -.....++.+.|.++|.++.. .. ..+++|+++. ...|+++|+.+++.|+++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~v~~---~~-~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 452 (460)
T 3gju_A 383 MLAAVEFVADKDDRVFFDA-----SQKIGPQVATALAASGVIGRA---MP-QGDILGFAPP-LCLTREQADIVVSKTADA 452 (460)
T ss_dssp TEEEEEECSBTTTTBCCCG-----GGCHHHHHHHHHHHTTEECEE---CS-SSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEccCccccccccc-----hHHHHHHHHHHHHHCCeEEec---CC-CCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 3444544322110000000 011234678888899964422 11 2368999985 789999999999999887
Q ss_pred hh
Q psy1785 626 GH 627 (629)
Q Consensus 626 ~~ 627 (629)
.+
T Consensus 453 l~ 454 (460)
T 3gju_A 453 VK 454 (460)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 202
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.30 E-value=3e-10 Score=124.17 Aligned_cols=310 Identities=11% Similarity=0.008 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC-C---
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG-L--- 334 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG-l--- 334 (629)
..++.++++++++.+.....|++|||++|..|+.+++... ...|.++ ...+|......|-+..-+....+ .
T Consensus 120 ~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~----~~~g~~g-~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 194 (457)
T 3tfu_A 120 AARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYW----RGRGLPG-KRRLMTWRGGYHGDTFLAMSICDPHGGM 194 (457)
T ss_dssp HHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTCCCCSSHHHHTTSCCC---
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHH----HhcCCCC-CceEEEEcCCcCCccHHhhcccCCcccc
Confidence 3566778888887655689999999999999999988642 1123211 23456666666765444333311 0
Q ss_pred ------CCCCEEEEecCCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEee-CCCccccccC----HHHHHHHHHHcCCeE
Q psy1785 335 ------GSDNVYLIKTDAR--GRMLPESLRGEIQRTLAEGAVPFMVSATS-GTTVLGAFDP----IPAIADICAEYDMAD 401 (629)
Q Consensus 335 ------g~~~v~~V~~d~~--g~~d~~~Le~~i~~~~~~g~~~~~Vvat~-Gtt~~G~idp----l~ei~~i~~~~~~~l 401 (629)
....+..++.... +..|+++|+++|++.. ..+.+|++.- ..+..|.+-| +++|+++|++||+++
T Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 195 HSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp -------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred cccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0113455554322 3368899999887531 2345555555 4566777765 999999999999999
Q ss_pred EE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCC
Q psy1785 402 SV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFY 478 (629)
Q Consensus 402 hV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~ 478 (629)
++ ++.+.......+ .....++ ..|.++++ |.++.. ...|.++.+++ +........+.-+...
T Consensus 272 I~DEv~~g~gr~G~~~------a~~~~~~--~pdiit~s--K~l~gG~~~lG~v~~~~~-i~~~~~~~~~~~~~~~---- 336 (457)
T 3tfu_A 272 IFDEIATGFGRTGALF------AADHAGV--SPDIMCVG--KALTGGYLSLAATLCTAD-VAHTISAGAAGALMHG---- 336 (457)
T ss_dssp EEECTTTTTTTTSSSS------THHHHTC--CCSEEEEC--GGGGTTSSCCEEEEEEHH-HHHHHHHSSSCSCCCC----
T ss_pred EEEcCccCCccccchh------HhHhcCC--CceEEEEC--hhhhCCCcceEEEEEcHH-HHHHhhccCCCceeEe----
Confidence 99 655432111100 0011122 26888775 888775 36888888763 3332211001100000
Q ss_pred CcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCceEEEEEeeCC
Q psy1785 479 DTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECTNISFWYIPP 555 (629)
Q Consensus 479 ~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~~v~F~~~p~ 555 (629)
. + .++..........+++.+..++ ..++..++.+++++.|+++ +++..+. +.-..+.+.+..+
T Consensus 337 ------~--t-~~~n~~a~aaa~aaL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr--~~G~~~~i~l~~~ 402 (457)
T 3tfu_A 337 ------P--T-FMANPLACAVSVASVELLLGQD---WRTRITELAAGLTAGLDTARALPAVTDVR--VCGAIGVIECDRP 402 (457)
T ss_dssp ------C--T-TTTCHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHGGGGGSTTEEEEE--ECSSCEEEEESSC
T ss_pred ------c--C-CCcCHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhcCCCeeeee--cCCeEEEEEECCc
Confidence 0 0 0122222233334444443343 4556666788888888764 4444332 2333444544321
Q ss_pred CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 556 SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
. + ..++.++|.++|.++ . +. .+++|+++. ...|++||+++++.|+++.++
T Consensus 403 -~-------~--------~~~~~~~l~~~Gv~v-~--~~---~~~lRi~p~-~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 403 -V-------D--------LAVATPAALDRGVWL-R--PF---RNLVYAMPP-YICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp -C-------C--------HHHHHHHHHHTTEEC-C--CB---TTEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred -c-------c--------HHHHHHHHHHCCeEE-E--ec---CCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 0 0 135778888898543 2 22 258999984 788999999999999987654
No 203
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.29 E-value=9.6e-10 Score=120.10 Aligned_cols=322 Identities=11% Similarity=0.030 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.++++++++.+....+|++|||+++..++.+++... ...|.+. ...+|.....-|....-+...-+..
T Consensus 95 ~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~----~~~g~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~ 169 (459)
T 4a6r_A 95 AVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYW----DVQGKPE-KKTLIGRWNGYHGSTIGGASLGGMKYM 169 (459)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTCCCCSSHHHHHHSCCTTT
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH----HhcCCCC-CCEEEEECCCcCCccHHHHhhcCChhh
Confidence 34566778888887766789999999999999999988642 1223211 2345666777776554444443321
Q ss_pred -------CCCEEEEecCC-----CCCCC--------HHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHH
Q psy1785 336 -------SDNVYLIKTDA-----RGRML--------PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIA 391 (629)
Q Consensus 336 -------~~~v~~V~~d~-----~g~~d--------~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~ 391 (629)
...+..++... +. +| +++|++.|.+.. ...+.+|++.-..+..|.+-| +++|+
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 246 (459)
T 4a6r_A 170 HEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIE 246 (459)
T ss_dssp C---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred ccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 12556666432 22 56 778888876421 123456666556666777777 99999
Q ss_pred HHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCC
Q psy1785 392 DICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASA 468 (629)
Q Consensus 392 ~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~ 468 (629)
++|++||+++++ ++.+.........+ . ..++ ..|.++++ |.++.. ...|.++.++ ++....... .
T Consensus 247 ~l~~~~~~llI~DEv~~g~gr~G~~~~~----~--~~~~--~pdi~t~s--K~l~gg~~~lg~v~~~~-~i~~~~~~~-~ 314 (459)
T 4a6r_A 247 RICRKYDVLLVADEVICGFGRTGEWFGH----Q--HFGF--QPDLFTAA--KGLSSGYLPIGAVFVGK-RVAEGLIAG-G 314 (459)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSHH----H--HHTC--CCSEEEEC--GGGGTTSSCCEEEEECH-HHHHHHHHH-C
T ss_pred HHHHHcCCEEEEeccccCCCcccccchH----h--hcCC--CCCeeehh--hhhcCCCCCccceeeCH-HHHHHhhcC-C
Confidence 999999999999 66553222110000 1 1122 26888876 988765 5678888755 333322110 0
Q ss_pred CccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHH--HHHHHHHHHHHHHhcCCCcEEEccCCCce
Q psy1785 469 SYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHID--KSFDNAKYFTDKIRHRPGFKLVLDEPECT 546 (629)
Q Consensus 469 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~--~~~~la~~l~~~L~~~~g~~l~~~~p~~~ 546 (629)
.+.... + -++.+........+++.+..+.+.+.++ ....+.+.|.+.|.+.+.+..+. +.-+
T Consensus 315 ~~~~~~-------------t-~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~g~ 378 (459)
T 4a6r_A 315 DFNHGF-------------T-YSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR--GVGM 378 (459)
T ss_dssp TTHHHH-------------H-HCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE--EETT
T ss_pred CcccCC-------------C-CCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--EEEE
Confidence 000000 0 0111222233333444333344433333 22223333434445555555443 3334
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.|.+.........-.++ ......+.+.|.++|.++... + +++|+++. ...|+++++.+++.|+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~v~~~----g--~~iRi~~~-~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 379 VQAFTLVKNKAKRELFPDF-----GEIGTLCRDIFFRNNLIMRAC----G--DHIVSAPP-LVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp EEEEEECSBTTTTBCCSST-----THHHHHHHHHHHHTTEECEEE----T--TEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCccccccccch-----HHHHHHHHHHHHHCCeEEecC----C--CEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 4455543221100000000 012346778888999654221 2 58999984 8899999999999998765
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 447 ~ 447 (459)
T 4a6r_A 447 E 447 (459)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.29 E-value=1.1e-09 Score=119.13 Aligned_cols=323 Identities=11% Similarity=0.049 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG-- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg-- 335 (629)
...++.++++++++.+.....|++|||+++..|+.+++... ...|.+. ...+++....-|.+...+...-|..
T Consensus 88 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~----~~~G~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~ 162 (448)
T 3dod_A 88 PATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYW----KNIGKPE-KQKFIAMKNGYHGDTIGAVSVGSIELF 162 (448)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEEC-------------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH----HhhCCCC-CCEEEEECCCCCCccHHHHHhcCCccc
Confidence 34566678888886554689999999999999999998641 1123111 2345556666666544333332211
Q ss_pred -------CCCEEEEecCCCCCC-----------CHHHHHHHHHHHHhCCCCcEEEEEeeCC-CccccccC----HHHHHH
Q psy1785 336 -------SDNVYLIKTDARGRM-----------LPESLRGEIQRTLAEGAVPFMVSATSGT-TVLGAFDP----IPAIAD 392 (629)
Q Consensus 336 -------~~~v~~V~~d~~g~~-----------d~~~Le~~i~~~~~~g~~~~~Vvat~Gt-t~~G~idp----l~ei~~ 392 (629)
...+..+|.+...+. |+++|+++|... .....+|+..-.. +..|.+-| +++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~ 239 (448)
T 3dod_A 163 HHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRE 239 (448)
T ss_dssp ----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred cccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence 124566666554443 488899988732 1134445544443 55676655 999999
Q ss_pred HHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCC
Q psy1785 393 ICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
+|++||+++++ ++.+.......+.+ . ..++ ..|.++++ |.++.. ...|.++.+++ +.... .. .
T Consensus 240 l~~~~~~~lI~DEv~~g~g~~g~~~a~----~--~~~~--~~di~t~s--K~l~~G~~~ig~v~~~~~-~~~~~-~~--~ 305 (448)
T 3dod_A 240 LCTTYDVLMIVDEVATGFGRTGKMFAC----E--HENV--QPDLMAAG--KGITGGYLPIAVTFATED-IYKAF-YD--D 305 (448)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGG----G--GGTC--CCSEEEEC--GGGGTTSSCCEEEEEEHH-HHHTT-CS--C
T ss_pred HHHHhCCEEEEeccccCCCcccchhhh----h--hcCC--CCCEEEec--ccccCCcCceEEEEECHH-HHHHh-hh--c
Confidence 99999999999 66543221110000 1 1122 26788776 998766 36788887653 33321 11 0
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc---CCCcEEEccCCCce
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH---RPGFKLVLDEPECT 546 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~---~~g~~l~~~~p~~~ 546 (629)
+-.... ..... + -++..........+++.+..++ +.++..++.+++++.|++ .+.+..+. +.-.
T Consensus 306 ~~~~~~-----~~~~~--t-~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~g~ 372 (448)
T 3dod_A 306 YENLKT-----FFHGH--S-YTGNQLGCAVALENLALFESEN---IVEQVAEKSKKLHFLLQDLHALPHVGDIR--QLGF 372 (448)
T ss_dssp GGGCCC-----CCCCC--T-TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTTSTTEEEEE--EETT
T ss_pred cccCCc-----ccccC--C-CCcCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHhcCCCeEEEE--eeeE
Confidence 000000 00000 0 0112222233333444332333 344455555666555554 44333222 2233
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.+.+........... . ......++.+.|.++|.++ . +. + +++|+++. ...|++||+.+++.|+++.
T Consensus 373 ~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~~Gv~~-~--~~-~--~~iRi~~~-~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 373 MCGAELVRSKETKEPYP----A-DRRIGYKVSLKMRELGMLT-R--PL-G--DVIAFLPP-LASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp EEEEEECSBTTTTBCCC----G-GGCHHHHHHHHHHHTTEEC-C--EE-T--TEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEccCcccccccc----h-hhHHHHHHHHHHHHCCcEE-e--cc-C--CEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 44444432111000000 0 0001246778888899543 2 21 2 58999984 8899999999999998875
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 441 ~ 441 (448)
T 3dod_A 441 H 441 (448)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.28 E-value=1.7e-10 Score=123.45 Aligned_cols=293 Identities=9% Similarity=-0.003 Sum_probs=166.4
Q ss_pred HHHHHHHHH--hC-CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCC
Q psy1785 261 HVLAQMRTI--VG-FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337 (629)
Q Consensus 261 ~~~~~l~~l--~G-~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~ 337 (629)
++.+.++++ .| .+..+.++++|+++++..++. .. . |...|++..-+|.++..++...|.
T Consensus 79 ~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~-~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~--- 140 (400)
T 3asa_A 79 ALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLS-FF-G-------------PNQTVAIQDPSYPAYLDIARLTGA--- 140 (400)
T ss_dssp HHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHH-HH-C-------------SSCEEEEEESCCHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHH-Hc-C-------------CCCEEEECCCCcHHHHHHHHHcCC---
Confidence 344455665 46 455678999999998765332 11 1 333466667788888888888888
Q ss_pred C-EEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCccccc
Q psy1785 338 N-VYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLL 411 (629)
Q Consensus 338 ~-v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~ 411 (629)
+ ++.+|.++++.++.+ |++ + ..+.+|+.+...+.+|.+-| +.+|+++|+++|+++++ ++.....-
T Consensus 141 ~~~~~~~~~~~~~~~~~-l~~-~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 211 (400)
T 3asa_A 141 KEIIALPCLQENAFFPE-FPE-D-------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD 211 (400)
T ss_dssp SEEEEEECCGGGTTCCC-CCT-T-------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC
T ss_pred cceEecccchhcCcccC-hhh-c-------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC
Confidence 7 999998765433321 221 1 13445666678888999877 56788899999999999 66543211
Q ss_pred cccccccccccccccccC--CcceEEEeCCCCCCCCC-CccEEEEEeccch------hhhhhcCCCCccccCCcCCCccc
Q psy1785 412 TAPQQCSVFLTRRNYVIE--VVADSVTWNPHKLLTAP-QQCSVFLTRHQSV------LTECHSASASYLFQKDKFYDTKY 482 (629)
Q Consensus 412 ~~~~~~~~~l~~~~~~i~--~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~------l~~~~~~~~~yl~~~~~~~~~~~ 482 (629)
.. ... ... .+. .+.+.++.+++|+++.| +.+|+++++++.. +...... ...
T Consensus 212 ~~-~~~----~~~--~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~-----~~~-------- 271 (400)
T 3asa_A 212 PS-LPK----SIF--EIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWER-----FLS-------- 271 (400)
T ss_dssp TT-SCS----SGG--GSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHH-----HHH--------
T ss_pred CC-CCC----chh--hCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHH-----Hhc--------
Confidence 10 000 001 111 11457889999999744 4578888765321 1111000 000
Q ss_pred CCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCc
Q psy1785 483 DSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKED 562 (629)
Q Consensus 483 ~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~ 562 (629)
.+. ++ ...+....+..++....+++..++..++.+++.+.|++. |+++.. +...+.+.+++.|.+...
T Consensus 272 ----~~~-~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~--- 339 (400)
T 3asa_A 272 ----TTF-NG--ASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFG-GEHAPYLWVKPTQANISD--- 339 (400)
T ss_dssp ----HHC-CC--CCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEE-CSSSSEEEEECCCTTCCT---
T ss_pred ----cCc-cC--CChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeC-CCCceEEEEeccCCCCCH---
Confidence 000 01 111222222222211146667777888999999999987 888765 323334444412322111
Q ss_pred hhhHHHHHhhHHHHHHHHHHh-cCcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHHhh
Q psy1785 563 QADFNELLHKVAPKIKERMMK-SGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 627 (629)
Q Consensus 563 ~~~~~~~l~~~~~~i~~~l~~-~G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~ 627 (629)
.++.++|.+ .|.++....... +..+++|+++ .+++++|+.+++.|+++.+
T Consensus 340 ------------~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~~~ 391 (400)
T 3asa_A 340 ------------RDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS---LGKREDILAACERLQMAPA 391 (400)
T ss_dssp ------------TTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC---CSCHHHHHHHHHHHHC---
T ss_pred ------------HHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe---eCCHHHHHHHHHHHHHHHH
Confidence 134555654 476543322221 1235899994 4689999999999987654
No 206
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.28 E-value=3.6e-11 Score=130.15 Aligned_cols=230 Identities=12% Similarity=0.088 Sum_probs=150.2
Q ss_pred HHHHHHHHHhCCCCCCeEE---eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcC-CcchHHH----------
Q psy1785 261 HVLAQMRTIVGFQGGDGIF---CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSE-DAHYSIK---------- 326 (629)
Q Consensus 261 ~~~~~l~~l~G~~~~~g~~---~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~-~~H~Si~---------- 326 (629)
++.+.+++++|.+. .++ +++||.+|..++.+.. .|...|+++. ..|....
T Consensus 78 ~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all--------------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~ 141 (427)
T 3hvy_A 78 SLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNL--------------RPNDTMMSICGMPYDTLHDIIGMDDSKK 141 (427)
T ss_dssp HHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTC--------------CTTCEEEECSSSCCGGGHHHHTCCTTCC
T ss_pred HHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhc--------------CCCCEEEEeCCCCchhHHHHhccccchh
Confidence 33456889999864 355 7899998876665432 2444566665 5555443
Q ss_pred -HHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--cCC
Q psy1785 327 -KLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATS----GTTVLGAFDPIPAIADICAE--YDM 399 (629)
Q Consensus 327 -kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~----Gtt~~G~idpl~ei~~i~~~--~~~ 399 (629)
..++..|+ +++.|+. ++|.+|+++|+++|.+ ...+.+|+... .++.+|.+.|+++|+++|++ +|+
T Consensus 142 ~~~l~~~G~---~~~~v~~-~~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~ 213 (427)
T 3hvy_A 142 VGSLREYGV---KYKMVDL-KDGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV 213 (427)
T ss_dssp SCCTGGGTC---EEEECCC-BTTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS
T ss_pred hhHHHHcCC---EEEEecC-CCCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC
Confidence 33445677 8888888 7899999999999874 12466777777 78899999999999999999 899
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCC---CCccEEEEEeccchhhhhhcC-CCCcccc
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTA---PQQCSVFLTRHQSVLTECHSA-SASYLFQ 473 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~---P~~~g~ll~r~~~~l~~~~~~-~~~yl~~ 473 (629)
+++| +++.......| ++.|+|.++.++||+++. |.+ |+++.+ +++.+..... ....+.
T Consensus 214 ~livD~a~~~~~~~~~p-------------~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~-~~li~~l~~~~~~~~~g- 277 (427)
T 3hvy_A 214 IVFVDNCYGEFVEEKEP-------------TDVGADIIAGSLIKNIGGGIATTG-GYIAGK-EEYVTQATFRVTVPGIG- 277 (427)
T ss_dssp EEEEECTTCTTTSSSCG-------------GGGTCSEEEEETTSGGGTTTCCSC-EEEEEC-HHHHHHHHHHHSCTTTG-
T ss_pred EEEEECCccccccCCCC-------------cccCCeEEEECCcccccccccceE-EEEEEC-HHHHHHHHHHhhcCCcc-
Confidence 9999 77654422221 233699999999999987 433 666654 4455443210 111110
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCce-----EE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECT-----NI 548 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~-----~v 548 (629)
...+-.+.. .|+.++ |..-+..++++..+++.++++.|++. |+++.. . ... ++
T Consensus 278 ---------------~~~~~~~~~--a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p-~-~~~~~~~li~ 335 (427)
T 3hvy_A 278 ---------------GECGSTFGV--MRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVLP-K-YNDKRTDIIQ 335 (427)
T ss_dssp ---------------GGCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEES-C-TTSCCSSSEE
T ss_pred ---------------cccCCCHHH--HHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeecC-C-CCCCCceEEE
Confidence 011111111 244433 23345678889999999999999998 778743 2 222 66
Q ss_pred EEEe
Q psy1785 549 SFWY 552 (629)
Q Consensus 549 ~F~~ 552 (629)
+|.+
T Consensus 336 ~~~l 339 (427)
T 3hvy_A 336 AIKF 339 (427)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6765
No 207
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.28 E-value=1e-10 Score=125.02 Aligned_cols=303 Identities=7% Similarity=0.015 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHHHHHHhCC--CCCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH
Q psy1785 254 VFSLMEEHVLAQMRTIVGF--QGGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329 (629)
Q Consensus 254 ~~~~~E~~~~~~l~~l~G~--~~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa 329 (629)
....+-+.+.+++.+-.|. +..+.++ |+|||+++..++...+... .|...|+++.-+|.+....+
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~-----------~~gd~Vlv~~p~~~~~~~~~ 140 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-----------KFSRDVYLPKPSWGNHTPIF 140 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-----------TTCCEEEEEESCCTTHHHHH
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhc-----------cCCCEEEEcCCCchhHHHHH
Confidence 3333444444444433332 2457766 9999999988776554321 13445777778888999999
Q ss_pred HHcCCCCCCEEEEecC--CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE-
Q psy1785 330 AFEGLGSDNVYLIKTD--ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV- 403 (629)
Q Consensus 330 ~~lGlg~~~v~~V~~d--~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV- 403 (629)
+..|. +++.+|.+ +++.+|++.|++.+++. ...+.+|+.+...+.+|.+ +++++|+++|+++|+++++
T Consensus 141 ~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 214 (401)
T 7aat_A 141 RDAGL---QLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFD 214 (401)
T ss_dssp HHTTC---EEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCC---eeEeeeeeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEc
Confidence 99998 99999985 36899999998888652 2245677888888889954 5688999999999999999
Q ss_pred -ecCcccccccccccccccccccc-ccCCcceEEEeCCCCCCCCC-CccEEEEEe--ccchhhhhhcCCCCccccCCcCC
Q psy1785 404 -TWNPHKLLTAPQQCSVFLTRRNY-VIEVVADSVTWNPHKLLTAP-QQCSVFLTR--HQSVLTECHSASASYLFQKDKFY 478 (629)
Q Consensus 404 -A~gg~~l~~~~~~~~~~l~~~~~-~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r--~~~~l~~~~~~~~~yl~~~~~~~ 478 (629)
+|.....-..+.+.. ....+ .... -..++.+++|.++.| .-+|.+++. ++............+....
T Consensus 215 eay~~~~~~~~~~~~~---~~~~~~~~~~-~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~---- 286 (401)
T 7aat_A 215 MAYQGFASGDINRDAW---ALRHFIEQGI-DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM---- 286 (401)
T ss_dssp ESCTTTTTSCHHHHTH---HHHHHHHTTC-CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH----
T ss_pred cccccccCCCccccHH---HHHHHHhcCC-cEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc----
Confidence 665543211100000 00000 0112 457889999999754 226877762 3321111100000000000
Q ss_pred CcccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceE
Q psy1785 479 DTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTN 547 (629)
Q Consensus 479 ~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~ 547 (629)
+ .+ ..++....+...+. .+.+++..++..++.+++.+.|++.. +++.. .|..+.
T Consensus 287 ---------~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~--~~~~~~ 351 (401)
T 7aat_A 287 ---------Y-SN---PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI--TDQIGM 351 (401)
T ss_dssp ---------H-SS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH--HHCCSS
T ss_pred ---------c-CC---CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee--cCCcce
Confidence 0 00 11222222222221 23356667777888999999998862 34433 244444
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 548 v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
++|. .+. . ..+...+.+.|..+ . + .+|++++ ..+++ +|+++++.|+++.
T Consensus 352 ~~~~----~~~----~-----------~~~~~ll~~~gi~v-~-------~-~~Ris~~-~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 352 FCFT----GLK----P-----------EQVERLTKEFSIYM-T-------K-DGRISVA-GVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp EEEC----CCC----H-----------HHHHHHHHHHCEEC-C-------T-TCEEEGG-GCCTT-THHHHHHHHHHHH
T ss_pred EEec----CCC----H-----------HHHHHHHHhCCEec-c-------C-CCeEEec-cCChh-hHHHHHHHHHHHh
Confidence 4442 111 0 12333345567532 1 1 3799996 44444 5999999998864
No 208
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.27 E-value=1.6e-09 Score=118.97 Aligned_cols=318 Identities=14% Similarity=0.047 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC----
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL---- 334 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl---- 334 (629)
..++.++++++++.+.....|++||+++|..|+.+++... ...|.++ ...+|.....-|-+..-+...-|.
T Consensus 101 ~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~----~~~g~~~-~~~ii~~~~~yHg~t~~~~~~~~~~~~~ 175 (472)
T 3hmu_A 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYW----QNKGQPE-KTVIISRKNAYHGSTVASSALGGMAGMH 175 (472)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTCCCCSSHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHH----HhcCCCC-CCEEEEEcCcCCCccHHhhhccCChhhc
Confidence 3555667788876554679999999999999999998742 1223221 234666677777665444443321
Q ss_pred ----CCCCEEEEecCC-----CCCCC--------HHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHH
Q psy1785 335 ----GSDNVYLIKTDA-----RGRML--------PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADI 393 (629)
Q Consensus 335 ----g~~~v~~V~~d~-----~g~~d--------~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i 393 (629)
....+..++... ++ +| +++|++.|.+.. ...+.+|++.-..+..|.+-| |++|+++
T Consensus 176 ~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l 252 (472)
T 3hmu_A 176 AQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRI 252 (472)
T ss_dssp HTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHH
T ss_pred cccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHH
Confidence 122566776432 22 45 778888876421 123556666555666788887 9999999
Q ss_pred HHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCc
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASY 470 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~y 470 (629)
|++||+++++ ++.+.......+.+ . ..++ . .|.++++ |.++.. ...|.++.++ ++.... .. ..
T Consensus 253 ~~~~gillI~DEv~~gfgr~G~~~a~----~--~~~v-~-pdi~t~s--K~l~gg~~plG~v~~~~-~i~~~~-~~--~~ 318 (472)
T 3hmu_A 253 CDKYDILLIADEVICGFGRTGNWFGT----Q--TMGI-R-PHIMTIA--KGLSSGYAPIGGSIVCD-EVAHVI-GK--DE 318 (472)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSCHH----H--HHTC-C-CSEEEEC--GGGTTTSSCCEEEEEEH-HHHHHH-TT--SC
T ss_pred HHHcCCEEEEEccccCCcccCccchh----H--HhCC-C-Cceeeec--hhhhcCCcceEEEEECH-HHHHhc-cc--CC
Confidence 9999999999 66653222210000 1 1123 2 6888876 988765 4678888865 343322 11 10
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHH-HHHHHHHHHHhcC---CCcEEEccCCCce
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSF-DNAKYFTDKIRHR---PGFKLVLDEPECT 546 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~-~la~~l~~~L~~~---~g~~l~~~~p~~~ 546 (629)
+... . + -++.+....+...+++.+..+. .+++.. ++.+++++.|+++ |.+..+. +.-.
T Consensus 319 ~~~~----------~--t-~~~np~a~aAa~aaL~~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr--~~G~ 380 (472)
T 3hmu_A 319 FNHG----------Y--T-YSGHPVAAAVALENLRILEEEN---ILDHVRNVAAPYLKEKWEALTDHPLVGEAK--IVGM 380 (472)
T ss_dssp BCCC----------C--T-TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHTHHHHHHHHHHGGGGSTTEEEEE--EETT
T ss_pred cccc----------C--C-CCCCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--ecCc
Confidence 1000 0 0 0122222333334444433333 455555 6677777777654 4444332 3334
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.|.+.+.......-..+ ..+....+.+.|.++|.++... + +++|+++. ...|++|||.+++.|+++.
T Consensus 381 ~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~Gv~v~~~----g--~~iRi~p~-~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 381 MASIALTPNKASRAKFASE----PGTIGYICRERCFANNLIMRHV----G--DRMIISPP-LVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp EEEEEECSCGGGTCCBSSC----TTHHHHHHHHHHHHTTBCCEEE----T--TEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCccccccccch----hHHHHHHHHHHHHHCCcEEEec----C--CEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 4555543221000000000 0112346778888999654321 2 58999984 8899999999999998765
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 450 ~ 450 (472)
T 3hmu_A 450 D 450 (472)
T ss_dssp H
T ss_pred H
Confidence 4
No 209
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.27 E-value=3.2e-10 Score=122.47 Aligned_cols=301 Identities=7% Similarity=-0.004 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 253 PVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 253 p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
+....+++.+.+|+.+-++.+..+.++++|+++++.. +. +.-. |...|++..-+|.++..++...
T Consensus 98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~-~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~ 162 (432)
T 3ei9_A 98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQ-VMFG-------------SNVTIAVQDPSYPAYVDSSVIM 162 (432)
T ss_dssp TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HH-HHHC-------------TTCCEEEEESCCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HH-HHcC-------------CCCEEEEeCCCCHHHHHHHHHc
Confidence 3445666776667665456666789999999988654 32 2211 3445777888999999998888
Q ss_pred CCCC---------CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHcCCe
Q psy1785 333 GLGS---------DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD---PIPAIADICAEYDMA 400 (629)
Q Consensus 333 Glg~---------~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id---pl~ei~~i~~~~~~~ 400 (629)
|... .+++.+|+++++.++++ |++ ...+.+|+.+...+.+|.+- ++.+|+++|++||++
T Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~ 233 (432)
T 3ei9_A 163 GQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST--------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSI 233 (432)
T ss_dssp TCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCcccccccccccCceEEeccCcccCCcCC-hhh--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcE
Confidence 7411 26889998765433221 222 12344566667888899875 467777779999999
Q ss_pred EEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCC-CCCccEEEEEeccch-------hhhhhcCCCCc
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLT-APQQCSVFLTRHQSV-------LTECHSASASY 470 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~-~P~~~g~ll~r~~~~-------l~~~~~~~~~y 470 (629)
+++ +++....-..+.... ... +... .+.++.+++|.++ ....+|+++.+++.. ....... ..+
T Consensus 234 li~Dea~~~~~~~~~~~~~~---~~~--~~~~-~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~ 306 (432)
T 3ei9_A 234 IVYDSAYAMYMSDDNPRSIF---EIP--GAEE-VAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRI-ICT 306 (432)
T ss_dssp EEEECTTGGGCCSSCCSSGG---GST--TGGG-TEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHH-HHH
T ss_pred EEEccchHhhccCCCCCChh---hcC--CCCC-eEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHH-hcc
Confidence 999 666543221110000 110 1122 6789999999997 445678888766431 1111000 000
Q ss_pred cccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC---hhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCceE
Q psy1785 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG---TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTN 547 (629)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G---~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~~ 547 (629)
. ......+...++..++. .+.++++.++..++++++.+.|++. |+++.. +.....
T Consensus 307 ~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~ 364 (432)
T 3ei9_A 307 C--------------------FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYG-GKNAPY 364 (432)
T ss_dssp S--------------------CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEE-CSSSSE
T ss_pred c--------------------cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecC-CCcceE
Confidence 0 00112344444444443 2446777888889999999999998 888775 333444
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhc-CcEEEeeeecC-CccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 548 ISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS-GSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 548 v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~i~~~~~~-~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
+.+.+. +.. ..++.++|.++ |..+....... ...+++|+++. +++++|+..++.|++.
T Consensus 365 ~~~~~~--~~~---------------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~---~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 365 VWVHFP--NQS---------------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAF---GHRENILEACRRFKQL 424 (432)
T ss_dssp EEEECT--TSC---------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred EEEECC--CCC---------------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEec---CCHHHHHHHHHHHHHH
Confidence 444432 110 02345555554 76543322221 12368999974 4899999999998875
Q ss_pred h
Q psy1785 626 G 626 (629)
Q Consensus 626 ~ 626 (629)
-
T Consensus 425 ~ 425 (432)
T 3ei9_A 425 Y 425 (432)
T ss_dssp H
T ss_pred h
Confidence 3
No 210
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.27 E-value=4.5e-11 Score=127.29 Aligned_cols=279 Identities=10% Similarity=0.045 Sum_probs=169.2
Q ss_pred CCCeEE--eCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecC--CCCC
Q psy1785 274 GGDGIF--CPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTD--ARGR 349 (629)
Q Consensus 274 ~~~g~~--~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d--~~g~ 349 (629)
..+.++ ++|||+++..++...+.. .|...|++..-+|.++..++...|. +++.+|.+ +++.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~------------~~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~ 156 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKN------------TSVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHT 156 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHH------------SCCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTE
T ss_pred cccEEEEecccchhhHHHHHHHHHHh------------CCCCEEEEcCCCchhHHHHHHHcCC---ceEEEecccCCCCC
Confidence 456777 999999998887665432 1333566677788888899999998 99999986 5678
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHcCCeEEE--ecCcccccc--cccccccccc
Q psy1785 350 MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEYDMADSV--TWNPHKLLT--APQQCSVFLT 422 (629)
Q Consensus 350 ~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~~~~lhV--A~gg~~l~~--~~~~~~~~l~ 422 (629)
+|+++|++++.+. .....+++.+...+.+|.+-| +++|+++|+++|+++++ ++.....-. ... .
T Consensus 157 ~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~------~ 227 (396)
T 2q7w_A 157 LDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAE------G 227 (396)
T ss_dssp ECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTH------H
T ss_pred cCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhH------H
Confidence 9999999988641 123456777888888898754 66789999999999999 665533210 000 0
Q ss_pred ccccccCCcceEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHH
Q psy1785 423 RRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLK 499 (629)
Q Consensus 423 ~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~ 499 (629)
...+.....-+.++.+++|.++.| ..+|.+++ .++..+..... .+..... . +..+ ...+.
T Consensus 228 ~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~----~~~~~~~--------~--~~~~---~~~~~ 290 (396)
T 2q7w_A 228 LRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFS----QMKAAIR--------A--NYSN---PPAHG 290 (396)
T ss_dssp HHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHH----HHHHHHH--------T--TTSS---CCHHH
T ss_pred HHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHH----HHHHHHh--------h--ccCC---CCcHH
Confidence 000000111457788999999743 33688886 23322111100 0000000 0 0001 12233
Q ss_pred HHHHHHhcCh--------hhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEEeeCCCCCCCCchhhHHH
Q psy1785 500 FWFMWKAKGT--------DGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFWYIPPSLRGKEDQADFNE 568 (629)
Q Consensus 500 ~w~~l~~~G~--------~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~ 568 (629)
.+.+...+.. +.+++..++..++.+++.+.|++.. ++++.. |..+.+++ .. +. .
T Consensus 291 ~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~-~~---~~----~----- 355 (396)
T 2q7w_A 291 ASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII--KQNGMFSF-SG---LT----K----- 355 (396)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH--HCCSSEEE-CC---CC----H-----
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec--CCCceEEE-ec---CC----H-----
Confidence 3333343322 4566677778888999999999873 365432 44444433 21 10 0
Q ss_pred HHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 569 LLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 569 ~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
..+.+.+.+.|.++ . + .+|++++ . .|+++++.+++.|+++
T Consensus 356 ------~~~~~~l~~~gv~v-~--~------~~Ris~~-~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 356 ------EQVLRLREEFGVYA-V--A------SGRVNVA-G-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ------HHHHHHHHHHCEEC-C--T------TCEEEGG-G-CCTTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCeee-c--C------CceEEEe-e-cCHHHHHHHHHHHHhc
Confidence 13455566778532 2 1 2799996 3 4899999999999875
No 211
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.25 E-value=4.6e-10 Score=121.44 Aligned_cols=306 Identities=10% Similarity=0.090 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC---
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS--- 336 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~--- 336 (629)
.++.+++++.++ +....+|++|||+++..++..++... | ...+|......|.+...+....|.+.
T Consensus 98 ~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 165 (434)
T 3l44_A 98 VKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYT-------G----RTKIMKFAGCYHGHSDLVLVAAGSGPSTL 165 (434)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEETTCCCCSSGGGGBC-------C
T ss_pred HHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhh-------C----CCEEEEEcCccCCCcHHHHhhcCCccccc
Confidence 455566778776 44689999999999999999887631 1 23455666666654332222222110
Q ss_pred -------------CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCC
Q psy1785 337 -------------DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDM 399 (629)
Q Consensus 337 -------------~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~ 399 (629)
.+++.+|.+ |+++|+++|.+.. ....+|++.-..+..|.+-| +++|+++|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i 237 (434)
T 3l44_A 166 GTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA 237 (434)
T ss_dssp CCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC
T ss_pred CCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 134444432 8999999987532 13456666666666788888 9999999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF 477 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~ 477 (629)
++++ ++.++ .......+ . ..++ ..|.++++ |.+++++..|.++.++ ++..........+.
T Consensus 238 llI~DEv~~g~-~~g~~~~~----~--~~~~--~~di~t~s--K~~~~G~~iG~~~~~~-~i~~~~~~~~~~~~------ 299 (434)
T 3l44_A 238 LVIYDEVITAF-RFMYGGAQ----D--LLGV--TPDLTALG--KVIGGGLPIGAYGGKK-EIMEQVAPLGPAYQ------ 299 (434)
T ss_dssp EEEEECTTTTT-TSSSSCHH----H--HHTC--CCSEEEEE--GGGGTTSSCEEEEECH-HHHTTBTTTSSBCC------
T ss_pred EEEEeccccce-eccccHHH----H--HcCC--CCCeeehh--hhhcCCcCeeeEEEcH-HHHHhhccCCCccc------
Confidence 9999 77654 22110000 1 1122 25777664 8888888899987655 34432111000000
Q ss_pred CCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCCcEEEccCCCceEEEEEee
Q psy1785 478 YDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPGFKLVLDEPECTNISFWYI 553 (629)
Q Consensus 478 ~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g~~l~~~~p~~~~v~F~~~ 553 (629)
.+. .++..........+++.+..+ +.+++..++.+++++.|++ .+.+..+ .+..+.+.+.+.
T Consensus 300 ------~~t---~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~~~~~~ 365 (434)
T 3l44_A 300 ------AGT---MAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITL--NRLKGALTVYFT 365 (434)
T ss_dssp ------CCT---TTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEE--EEETTEEEEEES
T ss_pred ------CCC---CCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEE--EeeccEEEEEEe
Confidence 000 011122223333444444333 3455556666677666665 3322222 123344445443
Q ss_pred CCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 554 PPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 554 p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
....... ......-.....++.+.|.++|.++ . +. + ...+|++ ..+|++|++.+++.|+++.++
T Consensus 366 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gv~v-~--~~-~-~~~~rl~---~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 366 TNTIEDY---DAAQDTDGEMFGKFFKLMLQEGVNL-A--PS-K-YEAWFLT---TEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp SSCCCSH---HHHHHSCHHHHHHHHHHHHHTTEEC-C--SS-T-TCCEECC---TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCcccch---hhccccCHHHHHHHHHHHHHCCeEE-e--ec-C-CCcEEEe---cccCHHHHHHHHHHHHHHHHH
Confidence 2211100 0000000012246778888899543 2 11 1 2357763 578999999999999887653
No 212
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.25 E-value=1.9e-09 Score=118.45 Aligned_cols=322 Identities=14% Similarity=0.102 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC-
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG- 335 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg- 335 (629)
....++.++++++++.+.....|++|||++|..|+.+++... ...|.++ ...+|+....-|.+..-+...-|..
T Consensus 97 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~----~~~g~~~-~~~vi~~~~~yHg~~~~~~~~~~~~~ 171 (476)
T 3i5t_A 97 SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN----NVLGRPQ-KKRIIVRYDGYHGSTALTAACTGRTG 171 (476)
T ss_dssp HHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH----HHTTCTT-CCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH----HhcCCCC-CCEEEEEcCCcCcCChhhccccCChh
Confidence 344666778888887665689999999999999999998742 2234221 2356667777787765555443321
Q ss_pred --------CCCEEEEecCCC--C-CCC--------HHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHH
Q psy1785 336 --------SDNVYLIKTDAR--G-RML--------PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIAD 392 (629)
Q Consensus 336 --------~~~v~~V~~d~~--g-~~d--------~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~ 392 (629)
...+..++.... + ..| +++|++.|.+.. .....+|++.-..+..|.+-| |++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~ 249 (476)
T 3i5t_A 172 NWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKA 249 (476)
T ss_dssp GCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred hccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 234556654321 1 122 778888886421 123456666655666776655 999999
Q ss_pred HHHHcCCeEEE--ecCcccccccccccccccccc-ccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCC
Q psy1785 393 ICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRR-NYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASA 468 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~-~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~ 468 (629)
+|++||+++++ ++.+.......+ ... ..++ . .|.++++ |.++.. +..|.++.++ ++... +....
T Consensus 250 lc~~~gillI~DEv~~g~gr~G~~~------~~~~~~~v-~-pdi~t~s--K~l~~G~~plg~v~~~~-~i~~~-~~~~~ 317 (476)
T 3i5t_A 250 ICEKHDILYISDEVVTGFGRCGEWF------ASEKVFGV-V-PDIITFA--KGVTSGYVPLGGLAISE-AVLAR-ISGEN 317 (476)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSC------HHHHTTCC-C-CSEEEEC--GGGGTTSSCCEEEEECH-HHHHT-TSGGG
T ss_pred HHHHcCCEEEEEecccCCccccCce------eeecccCC-C-cchhhhh--hhhcCCCcCeEEEEECH-HHHHH-HhcCC
Confidence 99999999999 665532221100 011 1122 2 6888876 888876 5678888865 33332 11100
Q ss_pred ---CccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccC
Q psy1785 469 ---SYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDE 542 (629)
Q Consensus 469 ---~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~ 542 (629)
..+.. .. + -++.+....+...+++.+..+ +++++..++.+++++.|+++ |.+..+.
T Consensus 318 ~~~~~~~~----------~~--t-~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-- 379 (476)
T 3i5t_A 318 AKGSWFTN----------GY--T-YSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALASLRDLPGVAETR-- 379 (476)
T ss_dssp CTTCEECC----------CC--T-TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEE--
T ss_pred cccccccc----------cC--C-CCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--
Confidence 00000 00 0 012222333333444443333 34566667788888888764 3343332
Q ss_pred CCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 543 PECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 543 p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
+.-..+.+.+........ .+.. .......+.+.|.++|.++.. . + +++|+++. ..+|+++|+.+++.|
T Consensus 380 ~~G~~~~i~~~~~~~~~~----~~~~-~~~~~~~~~~~l~~~Gv~v~~---~-g--~~iRi~p~-l~~t~e~i~~~l~~l 447 (476)
T 3i5t_A 380 SVGLVGCVQCLLDPTRAD----GTAE-DKAFTLKIDERCFELGLIVRP---L-G--DLCVISPP-LIISRAQIDEMVAIM 447 (476)
T ss_dssp EETTEEEEEECCC---------CCHH-HHHHHHHHHHHHHHTTEECEE---E-T--TEEEECCC-TTCCHHHHHHHHHHH
T ss_pred ecCceeEEEEecCccccc----cccc-hhHHHHHHHHHHHHCCCEEEe---c-C--CEEEEECC-CCCCHHHHHHHHHHH
Confidence 333344454432211000 0000 011234678888899964322 1 2 58999984 789999999999999
Q ss_pred HHHhh
Q psy1785 623 ERLGH 627 (629)
Q Consensus 623 ~~l~~ 627 (629)
+++.+
T Consensus 448 ~~~l~ 452 (476)
T 3i5t_A 448 RQAIT 452 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 213
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.25 E-value=3e-09 Score=116.03 Aligned_cols=313 Identities=15% Similarity=0.062 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC-
Q psy1785 258 MEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG- 335 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg- 335 (629)
...++.++++++++.+. ...+|++|||++|..|+..++... | ...+|......|-...-+....+-.
T Consensus 108 ~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~-------g----~~~ii~~~~~yhg~~~~~~~~~~~~~ 176 (453)
T 4ffc_A 108 QYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT-------G----RPAVVAFDNAYHGRTNLTMALTAKSM 176 (453)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc-------C----CCEEEEEcCccCCcchHHHhhcCCCc
Confidence 33566677888887543 578999999999999999888641 2 2456777777787665555543321
Q ss_pred ---------CCCEEEEecCC-----CCCCCHHHHHHHHHHHHh--CCCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q psy1785 336 ---------SDNVYLIKTDA-----RGRMLPESLRGEIQRTLA--EGAVPFMVSATSGTTVLGAFDP----IPAIADICA 395 (629)
Q Consensus 336 ---------~~~v~~V~~d~-----~g~~d~~~Le~~i~~~~~--~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~ 395 (629)
...+..+|... .|....+.++..++...+ ......+|+..-.....|.+-| +++|+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 12577777652 122223444433332222 1223445555555555667766 999999999
Q ss_pred HcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCcccc
Q psy1785 396 EYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQ 473 (629)
Q Consensus 396 ~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~ 473 (629)
+||+++++ ++.+........ .....++ ..|.++++ |.++..+..|.++.++ ++.... .. .. .
T Consensus 257 ~~~~llI~DEv~~g~g~~g~~~------a~~~~~~--~pdi~t~s--K~~~~G~~~G~~~~~~-~i~~~~-~~---~~-~ 320 (453)
T 4ffc_A 257 ENGVVFIADEVQTGFARTGAWF------ASEHEGI--VPDIVTMA--KGIAGGMPLSAVTGRA-ELMDAV-YA---GG-L 320 (453)
T ss_dssp HHTCEEEEECTTTTTTTTSSSS------THHHHTC--CCSEEEEC--GGGGTTSSCEEEEEEH-HHHTTS-CT---TS-S
T ss_pred HcCCEEEEecCccCCCcccccc------hhhhcCC--CcchHhhh--hhhcCCcCeEEEEECH-HHHhhh-cc---cC-c
Confidence 99999999 665532211100 0011122 26788776 8887767788887755 343321 10 00 0
Q ss_pred CCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHh----cCCCcEEEccCCCceEEE
Q psy1785 474 KDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR----HRPGFKLVLDEPECTNIS 549 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~----~~~g~~l~~~~p~~~~v~ 549 (629)
... -++..........+++.+..+++ .++..++.+++++.|+ +.+.+..+. +.-..+.
T Consensus 321 ----------~~t---~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~ 382 (453)
T 4ffc_A 321 ----------GGT---YGGNPVTCAAAVAALGVMRELDL---PARARAIEASVTSRLSALAEEVDIIGEVR--GRGAMLA 382 (453)
T ss_dssp ----------CCS---SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCSSEEEEE--EETTEEE
T ss_pred ----------CCC---CCcCHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEE--eeceEEE
Confidence 000 11222222222333443323333 3444445555555554 455554432 2233444
Q ss_pred EEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 550 F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+.+.... .... .. ....++.+.|.++|.++... . ...+++|+++. ...|++||+.+++.|+++.++
T Consensus 383 ~~~~~~~-~~~~-~~-------~~~~~~~~~l~~~Gv~v~~~-~--~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 383 IEIVKPG-TLEP-DA-------ALTKSIAAEALSQGVLILTC-G--TFGNVIRLLPP-LVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp EEEBCTT-SCCB-CH-------HHHHHHHHHHHHTTEECCEE-C--TTSCEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCc-ccCC-CH-------HHHHHHHHHHHhCCCEEecC-C--CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 4443211 0001 10 11246778888999654322 1 12358999985 888999999999999887653
No 214
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.24 E-value=9.6e-09 Score=111.94 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCC--
Q psy1785 258 MEEHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL-- 334 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGl-- 334 (629)
...++.++++++++.+. ....|++|||++|..|+..++... | ...+|.....-|-...-+...-+-
T Consensus 105 ~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~-------g----~~~ii~~~~~yhG~~~~~~~~~~~~~ 173 (451)
T 3oks_A 105 GYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT-------H----KPAVVAFDHAYHGRTNLTMALTAKVM 173 (451)
T ss_dssp HHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred HHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc-------C----CCeEEEEcCCcCCccHHHHHhcCCCc
Confidence 33566677888886442 478999999999999999988641 2 244666777778665555444321
Q ss_pred --------CCCCEEEEecCCCC----------C---CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHH
Q psy1785 335 --------GSDNVYLIKTDARG----------R---MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPA 389 (629)
Q Consensus 335 --------g~~~v~~V~~d~~g----------~---~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~e 389 (629)
-...+..+|..... . .+++.+++.|++... .....+|+..-.....|.+-| +++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~-~~~~aavi~ep~~~~gG~~~~~~~~l~~ 252 (451)
T 3oks_A 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIG-ADNLAAVVIEPIQGEGGFIVPADGFLPT 252 (451)
T ss_dssp TTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTC-GGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcC-CCCEEEEEEcCCcCCCCccCCCHHHHHH
Confidence 01257777765211 1 124444455543221 223455555555555677766 999
Q ss_pred HHHHHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCC
Q psy1785 390 IADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS 467 (629)
Q Consensus 390 i~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~ 467 (629)
|+++|++||+++++ ++.+........ .....++ ..|.++++ |.++..+..|.++.++ ++.... ..
T Consensus 253 l~~l~~~~g~~lI~DEv~~g~g~~g~~~------~~~~~~~--~pdi~t~s--K~l~~G~~iG~v~~~~-~~~~~~-~~- 319 (451)
T 3oks_A 253 LLDWCRKNDVVFIADEVQTGFARTGAMF------ACEHEGI--DPDLIVTA--KGIAGGLPLSAVTGRA-EIMDSP-HV- 319 (451)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSS------GGGGGTC--CCSEEEEC--GGGGTTSSCEEEEEEH-HHHTCS-CT-
T ss_pred HHHHHHHcCCEEEEEecccCCCccccch------hhhhcCC--CCCeeeeh--hhhhCCcceEEEEECH-HHHhhh-cC-
Confidence 99999999999999 665432211100 0111122 26788775 9998777788887755 333321 10
Q ss_pred CCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHh----cCCCcEEEccCC
Q psy1785 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR----HRPGFKLVLDEP 543 (629)
Q Consensus 468 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~----~~~g~~l~~~~p 543 (629)
.. . .. + -++..........+++.+..++ ++++..++.+++++.|+ +.+.+..+. +
T Consensus 320 --~~-~----------~~--t-~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~ 378 (451)
T 3oks_A 320 --SG-L----------GG--T-YGGNPIACAAALATIETIESEG---LVARAQQIEKIMKDRLGRLQAEDDRIGDVR--G 378 (451)
T ss_dssp --TS-B----------CC--S-SSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--E
T ss_pred --CC-c----------CC--C-CCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--E
Confidence 00 0 00 0 0112222222233343332333 34444455555555554 445554332 2
Q ss_pred CceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHH
Q psy1785 544 ECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIE 623 (629)
Q Consensus 544 ~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~ 623 (629)
.-..+.+.+.... .... . . ....++.+.|.++|.++..... ..+++|+++. ...|+++|+.+++.|+
T Consensus 379 ~G~~~~~~~~~~~-~~~~-~-~------~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~~~-~~~t~e~i~~~l~~l~ 445 (451)
T 3oks_A 379 RGAMIAMELVKAG-TTEP-D-A------DLTKALCAGAHAAGVIVLSCGT---YGNVVRFLPP-LSIGDDLLNEGLDVLE 445 (451)
T ss_dssp ETTEEEEEEBSTT-SCCB-C-H------HHHHHHHHHHHHTTEECEEECT---TSCEEEECCC-TTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEEecCc-cCCC-C-H------HHHHHHHHHHHhCCcEEecCCC---CCCEEEEECC-CCCCHHHHHHHHHHHH
Confidence 3334445443211 0000 0 0 1124677888899965433211 2258999985 8889999999999999
Q ss_pred HHhhc
Q psy1785 624 RLGHD 628 (629)
Q Consensus 624 ~l~~~ 628 (629)
++.++
T Consensus 446 ~~l~~ 450 (451)
T 3oks_A 446 EVLRG 450 (451)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 87653
No 215
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.24 E-value=2.5e-09 Score=117.43 Aligned_cols=312 Identities=12% Similarity=0.016 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhch--------------hHHhcCCCCC-CCeEEEEcCCc
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFP--------------QIKTQGLASC-PRLVLYTSEDA 321 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~--------------~~~~~G~~~~-p~~vv~~s~~~ 321 (629)
.++.++.+.++++++.......|+++||+||..|+.+++..... .....+-++. ...+|...+.-
T Consensus 110 ~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y 189 (472)
T 1ohv_A 110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF 189 (472)
T ss_dssp THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence 44455555566665434457899999999999999999743110 0000010011 13566677778
Q ss_pred chHHHHHHHHcCC--------CCCCEEEEecCC-CC-------------CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCC
Q psy1785 322 HYSIKKLAAFEGL--------GSDNVYLIKTDA-RG-------------RMLPESLRGEIQRTLAEGAVPFMVSATSGTT 379 (629)
Q Consensus 322 H~Si~kaa~~lGl--------g~~~v~~V~~d~-~g-------------~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt 379 (629)
|-+..-+....|- ....+..++... .. ..|+++|+++|.+....+..+.+|++....+
T Consensus 190 Hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~ 269 (472)
T 1ohv_A 190 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS 269 (472)
T ss_dssp CCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred ccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcC
Confidence 8776666555432 111122233321 01 2368888888876433222455677766666
Q ss_pred ccccccC----HHHHHHHHHHcCCeEEE--ecCccccccccccccccccccccccC-CcceEEEeCCCCC-CCCCCccEE
Q psy1785 380 VLGAFDP----IPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIE-VVADSVTWNPHKL-LTAPQQCSV 451 (629)
Q Consensus 380 ~~G~idp----l~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~-~gaDsv~~~~HK~-l~~P~~~g~ 451 (629)
.+|.+-| |++|+++|++||+++++ ++.+.......+ ....+++. . .|.++++ |. ++ .|+
T Consensus 270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~------~~~~~gv~~~-~Di~t~s--K~~l~----GG~ 336 (472)
T 1ohv_A 270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFW------AHEHWGLDDP-ADVMTFS--KKMMT----GGF 336 (472)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS------GGGGGCCSSC-CSEEEEC--GGGSS----EEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCch------hccccCCCCC-CCEEEEc--ccccc----CCc
Confidence 7898877 99999999999999999 665422111100 11111232 2 7888877 98 44 244
Q ss_pred EEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHh
Q psy1785 452 FLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR 531 (629)
Q Consensus 452 ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~ 531 (629)
+ +++ .+ .. ....+. .+ | .++.......+..+++.+..++ +.++..++.++|++.|+
T Consensus 337 ~-~~~-~~-~~---~~~~~~------------~~--T-~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~ 392 (472)
T 1ohv_A 337 F-HKE-EF-RP---NAPYRI------------FN--T-WLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLL 392 (472)
T ss_dssp E-ECG-GG-SC---SSSSSS------------CC--S-SSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred c-Cch-hh-cc---cccccc------------cC--c-cCccHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence 4 432 22 10 000000 01 0 1222223333344555443333 45666778888888877
Q ss_pred cC----CC-cEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeec
Q psy1785 532 HR----PG-FKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQ 606 (629)
Q Consensus 532 ~~----~g-~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~ 606 (629)
++ |+ +.-+. +....+.|.+.. . . ....+.++|.++|.++.. . + .++||+++.
T Consensus 393 ~l~~~~~~~v~~~~--~~g~~~~~~~~~--------~-~-------~~~~~~~~l~~~Gv~~~~---~-g-~~~iRi~~~ 449 (472)
T 1ohv_A 393 DLQARYPQFISRVR--GRGTFCSFDTPD--------E-S-------IRNKLISIARNKGVMLGG---C-G-DKSIRFRPT 449 (472)
T ss_dssp HHHHHCTTTCEEEE--EETTEEEEECSS--------H-H-------HHHHHHHHHHHTTEECEE---E-T-TTEEEECCC
T ss_pred HHHhhCCCcEEeec--CCceEEEEEeCC--------h-h-------HHHHHHHHHHHCCeEEec---C-C-CCEEEEECC
Confidence 64 43 43232 333344454310 0 0 123577788888865322 1 2 258999995
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 607 NSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 607 n~~~t~edid~l~~~i~~l~~~l 629 (629)
..+|++|||.+++.|+++.+++
T Consensus 450 -~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 450 -LVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999887653
No 216
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.24 E-value=6.1e-10 Score=120.40 Aligned_cols=305 Identities=11% Similarity=0.023 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC---
Q psy1785 260 EHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS--- 336 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~--- 336 (629)
.+..++++++++ +.....|++|||+++..++..++... | ...++......|.+...+....|.+.
T Consensus 96 ~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 163 (429)
T 3k28_A 96 NKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYT-------G----RNKILKFIGCYHGHGDSLLIKAGSGVATL 163 (429)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH-------T----CCEEEEEETCCCCSCGGGCSSCCTTC---
T ss_pred HHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhh-------C----CCEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 445566777775 34679999999999999999887631 1 23456666666754433322222210
Q ss_pred -------------CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCC
Q psy1785 337 -------------DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDM 399 (629)
Q Consensus 337 -------------~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~ 399 (629)
..++.+|.+ |+++|++++.+.. ..+.+|++.-..+..|.+-| +++|+++|++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~ 235 (429)
T 3k28_A 164 GLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA 235 (429)
T ss_dssp --CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 033444432 8999999887531 23456666666666788888 9999999999999
Q ss_pred eEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcC
Q psy1785 400 ADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF 477 (629)
Q Consensus 400 ~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~ 477 (629)
++++ ++.+. .......+ .. .++ ..|.++++ |.+++.+..|.++.++ ++..........+.
T Consensus 236 ~li~DEv~~g~-~~g~~~~~----~~--~~~--~~di~t~s--K~~~~G~~iG~~~~~~-~~~~~~~~~~~~~~------ 297 (429)
T 3k28_A 236 LLIFDEVMTGF-RVAYNCGQ----GY--YGV--TPDLTCLG--KVIGGGLPVGAYGGKA-EIMRQVAPSGPIYQ------ 297 (429)
T ss_dssp EEEEECTTTTT-TSSTTHHH----HH--HTC--CCSEEEEC--GGGGTTSCCEEEEECH-HHHTTBTTTSSBCC------
T ss_pred EEEEecccccc-ccCcchHH----HH--hCC--CCceehhh--hhhcCCCCeEEEEEcH-HHHhhhccCCCccc------
Confidence 9999 77654 22110000 11 122 26777765 9888777789888765 34332111000000
Q ss_pred CCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CCcEEEccCCCceEEEEEee
Q psy1785 478 YDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PGFKLVLDEPECTNISFWYI 553 (629)
Q Consensus 478 ~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g~~l~~~~p~~~~v~F~~~ 553 (629)
..+-....+....++..+.... ++.+++..++.+++++.|++. +.+..+. +.-+.+.|.+.
T Consensus 298 ------------~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~g~~~~~~~~ 362 (429)
T 3k28_A 298 ------------AGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN--RAGSMIGIFFT 362 (429)
T ss_dssp ------------CCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE--EETTEEEEESS
T ss_pred ------------cCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE--eeccEEEEEEe
Confidence 0111122333333333321111 567777778888888887764 3322221 22334445443
Q ss_pred CCCCCCCCchhhHHHH-HhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 554 PPSLRGKEDQADFNEL-LHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 554 p~~~~~~~~~~~~~~~-l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
...... ...... -.....++.+.|.++|.++ .. . + .+.+|++ ..+|++|++++++.|+++.+++
T Consensus 363 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~--~-~-~~~~r~~---~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 363 DEPVIN----YDAAKSSNLQFFAAYYREMVEQGVFL-PP--S-Q-FEGLFLS---TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp SSCCCS----HHHHTTSCHHHHHHHHHHHHHTTEEC-CS--S-T-TSCBCCC---TTCCHHHHHHHHHHHHHHHHTC
T ss_pred cCCccc----ccccccccHHHHHHHHHHHHHCCeEE-ec--C-C-CCCEEEE---CCCCHHHHHHHHHHHHHHHHHH
Confidence 221110 000000 0011246778888899543 21 1 1 2357763 5789999999999999887653
No 217
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.24 E-value=6.3e-10 Score=121.26 Aligned_cols=311 Identities=10% Similarity=0.064 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhC-CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCC-CCeEEEEcCCcchHHHHHHHH------
Q psy1785 260 EHVLAQMRTIVG-FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASC-PRLVLYTSEDAHYSIKKLAAF------ 331 (629)
Q Consensus 260 ~~~~~~l~~l~G-~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~-p~~vv~~s~~~H~Si~kaa~~------ 331 (629)
.++.+.++++++ .+.....|++|||++|..++..++......-...|.+.. ..-+|+....-|.+..-+...
T Consensus 104 ~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~ 183 (449)
T 2cjg_A 104 ARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPT 183 (449)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchh
Confidence 455556777776 334679999999999999999887431100001121111 123555555666543322111
Q ss_pred --cCCC--CCCEEEEecCC--CC--------CCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHH
Q psy1785 332 --EGLG--SDNVYLIKTDA--RG--------RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADI 393 (629)
Q Consensus 332 --lGlg--~~~v~~V~~d~--~g--------~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i 393 (629)
.+++ ...++.+|.++ .. ..++++|+++|.+. +..+.+|++....+.+|.+-| +++|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l 260 (449)
T 2cjg_A 184 ITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260 (449)
T ss_dssp HHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHH
T ss_pred hcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHH
Confidence 1221 12677777754 11 25666688877541 224556666655566787777 9999999
Q ss_pred HHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCcc
Q psy1785 394 CAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYL 471 (629)
Q Consensus 394 ~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl 471 (629)
|++||+++++ ++.+......... ....++ ..|.++++ |++ | .|.+++++ ++..... +.++
T Consensus 261 ~~~~g~lli~DEv~~g~g~~g~~~~------~~~~~~--~~di~t~s--K~l--~--iG~~~~~~-~~~~~l~---~~~~ 322 (449)
T 2cjg_A 261 CDEFDALLIFDEVQTGCGLTGTAWA------YQQLDV--APDIVAFG--KKT--Q--VCGVMAGR-RVDEVAD---NVFA 322 (449)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSST------HHHHTC--CCSEEEEC--GGG--S--SEEEEECG-GGGGSTT---CTTT
T ss_pred HHHCCcEEEEeccccCCCccCccee------ecccCC--CceEEEec--Ccc--c--EEEEEECH-HHhhhhh---hccc
Confidence 9999999999 6665322111000 011122 36888776 988 5 68888766 4433210 0011
Q ss_pred ccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhc----CCC-cEEEccCCCce
Q psy1785 472 FQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH----RPG-FKLVLDEPECT 546 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~g-~~l~~~~p~~~ 546 (629)
.... ... + .++......++..+++.+..+ ++.++..++.+++++.|++ .+. +..+. +..+
T Consensus 323 ~~~~-------~~~--t-~~~n~~~~~aa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~--~~g~ 387 (449)
T 2cjg_A 323 VPSR-------LNS--T-WGGNLTDMVRARRILEVIEAE---GLFERAVQHGKYLRARLDELAADFPAVVLDPR--GRGL 387 (449)
T ss_dssp STTS-------SCC--S-SSSCHHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE--EETT
T ss_pred CCcc-------ccc--C-CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe--eccE
Confidence 0000 000 1 112222333333444443233 3456667788888888875 354 54432 3444
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.|.+.. . . ...++.++|.++|.++.. . + .+++|+++. ..+|++||+.+++.|+++.
T Consensus 388 ~~~~~~~~--------~-~-------~~~~~~~~l~~~Gv~v~~-~---g-~~~iRi~~~-~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 388 MCAFSLPT--------T-A-------DRDELIRQLWQRAVIVLP-A---G-ADTVRFRPP-LTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp EEEEECSS--------H-H-------HHHHHHHHHHHTTEECEE-E---T-TTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECC--------h-H-------HHHHHHHHHHHCCeEEec-C---C-CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 45554421 0 0 113577788888864322 1 2 258999984 8899999999999999876
Q ss_pred hc
Q psy1785 627 HD 628 (629)
Q Consensus 627 ~~ 628 (629)
++
T Consensus 446 ~~ 447 (449)
T 2cjg_A 446 PV 447 (449)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 218
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.24 E-value=5.5e-10 Score=119.68 Aligned_cols=312 Identities=10% Similarity=0.080 Sum_probs=169.6
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEc-CCcchHH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTS-EDAHYSI 325 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s-~~~H~Si 325 (629)
|...+....+.+.+.+++.+..|++ ..+.++|+|+|+++..++.+.+.. |-. .....|+++ .-+|...
T Consensus 71 y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~--------gd~-~~~~~vi~~~~p~~~~~ 141 (417)
T 3g7q_A 71 YDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGR--------RAD-GSTKKVLFPLAPEYIGY 141 (417)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC-------------CCBEEEESSCCCHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCC--------Ccc-CCcceEEEeCCCccccc
Confidence 4444455566667777776666654 468999999999988887765321 100 011145565 4444444
Q ss_pred HHHHHHc----CCCCCCEEEEecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHc
Q psy1785 326 KKLAAFE----GLGSDNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADICAEY 397 (629)
Q Consensus 326 ~kaa~~l----Glg~~~v~~V~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~~~~ 397 (629)
..++... +.+ -.+..++.+. ++.+|+++|+ +. ..+.+|+.+...+.+|.+-| +++|+++|++|
T Consensus 142 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~l~--~~------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~ 212 (417)
T 3g7q_A 142 ADSGLEDDLFVSAR-PNIELLPEGQFKYHVDFEHLH--IG------EETGMICVSRPTNPTGNVITDEELMKLDRLANQH 212 (417)
T ss_dssp HC-----CCEEECC-CEEEEEGGGEEEEECCGGGCC--CC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred hhhccchhhhcccc-CcccccCCcccccccCHHHhc--cc------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc
Confidence 4443222 221 1344444332 3468998887 22 24667778888899999988 88999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ +|+.... .. ... .... ... +.+.++.+++|++.....+|+++... .+..........+
T Consensus 213 ~~~li~De~~~~~~~-~~--~~~---~~~~-~~~-~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~----- 278 (417)
T 3g7q_A 213 NIPLVIDNAYGVPFP-GI--IFS---EARP-LWN-PNIILCMSLSKLGLPGSRCGIIIAND-KTITAIANMNGII----- 278 (417)
T ss_dssp TCCEEEECTTCTTTT-CC--BCS---CCCC-CCC-TTEEEEEESGGGTCTTSCCEEEECCH-HHHHHHHHHHHHH-----
T ss_pred CCEEEEeCCCccccc-cc--ccc---cccc-CCC-CCEEEEEechhccCCCcceEEEEeCH-HHHHHHHHhhcce-----
Confidence 999999 6754211 00 000 0000 112 36888999999765556688776643 3433221100000
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHH-----HHHHHHHHHHHHHHHHhc-CC--CcEEEccCCCceE
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEA-----HIDKSFDNAKYFTDKIRH-RP--GFKLVLDEPECTN 547 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~-----~~~~~~~la~~l~~~L~~-~~--g~~l~~~~p~~~~ 547 (629)
+ .++.. +...++...+....+.+ +.++..+..+++.+.|++ .+ ++++.. |..+.
T Consensus 279 ------------~-~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~g~ 340 (417)
T 3g7q_A 279 ------------S-LAPGG---MGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK--PEGAI 340 (417)
T ss_dssp ------------C-CCCCS---HHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC--CCBSS
T ss_pred ------------e-eCCCc---HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC--CCcce
Confidence 0 01111 22222222222222322 233345566667777765 44 467654 44333
Q ss_pred E-EEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecC-Cc-------cceEEEeecCCCCCHHHHHHH
Q psy1785 548 I-SFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH-AL-------PNFFRLVLQNSALDHSDMDYF 618 (629)
Q Consensus 548 v-~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~-~~-------~~~lR~~~~n~~~t~edid~l 618 (629)
+ .+.+...+.. ..++.+.|.++|..+....... +. .+++|++++ . ++++|+.+
T Consensus 341 ~~~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~-~--~~~~i~~~ 402 (417)
T 3g7q_A 341 FLWLWFKDLPIT---------------TELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV-P--EPDKIEAG 402 (417)
T ss_dssp EEEEECTTCSSC---------------HHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESC-S--CHHHHHHH
T ss_pred EEEEEcCCCCCC---------------HHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEec-C--CHHHHHHH
Confidence 3 3333211111 1356677888886544322211 11 368999996 3 99999999
Q ss_pred HHHHHHHhhc
Q psy1785 619 IDEIERLGHD 628 (629)
Q Consensus 619 ~~~i~~l~~~ 628 (629)
++.|+++.++
T Consensus 403 ~~~l~~~l~~ 412 (417)
T 3g7q_A 403 VKILAEEIER 412 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 219
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.22 E-value=7.1e-11 Score=128.16 Aligned_cols=222 Identities=13% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHhCCCCCCe-EEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcC-CcchHHHHHHHH-----
Q psy1785 259 EEHVLAQMRTIVGFQGGDG-IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSE-DAHYSIKKLAAF----- 331 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g-~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~-~~H~Si~kaa~~----- 331 (629)
..++.+++++++|.+.... ++..+||+++..++.+.. .|...|++.. ..|.+....+.+
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~--------------~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~ 132 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL--------------RPGDELLYITGKPYDTLEEIVGVRGKGV 132 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC--------------CTTCEEEECSSSCCTTHHHHTTSSSCSS
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC--------------CCCCEEEEeCCCCchhHHHHHhhccccc
Confidence 3566677999999875322 224477888877765321 1334555565 788887766543
Q ss_pred -----cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--cCCe
Q psy1785 332 -----EGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATS----GTTVLGAFDPIPAIADICAE--YDMA 400 (629)
Q Consensus 332 -----lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~----Gtt~~G~idpl~ei~~i~~~--~~~~ 400 (629)
.|+ +++.++.+++|.+|+++|+++|.+ .+.+|+... .++..|.++|+++|+++|++ +|++
T Consensus 133 ~~~~~~G~---~~~~v~~~~~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~ 203 (431)
T 3ht4_A 133 GSFKEYNI---GYNAVPLTEGGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVV 203 (431)
T ss_dssp SCSGGGTC---EEEECCBCTTSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCE
T ss_pred chHHHcCC---EEEEeCCCCCCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCE
Confidence 577 899999999999999999998863 366777776 77889999999999999999 9999
Q ss_pred EEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCC---CCccEEEEEeccchhhhhhcC-CCCccccC
Q psy1785 401 DSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTA---PQQCSVFLTRHQSVLTECHSA-SASYLFQK 474 (629)
Q Consensus 401 lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~---P~~~g~ll~r~~~~l~~~~~~-~~~yl~~~ 474 (629)
++| +++.......| .+.|+|.++.++||++++ |.| |+++.++ ++....... ....+
T Consensus 204 livDea~~~~~~~~~~-------------~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li~~l~~~~~~~~~--- 265 (431)
T 3ht4_A 204 VFVDNCYGEFIEEQEP-------------CHVGADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYVEACAYRLTSPGI--- 265 (431)
T ss_dssp EEEECTTCTTSSSCCG-------------GGTTCSEEEEETTSGGGTTTCSSC-EEEEECH-HHHHHHHHHHSCTTT---
T ss_pred EEEeCCChhhccCCCc-------------cccCCeEEEcCccccCCCCCCCce-EEEEecH-HHHHHHHHHhccCCc---
Confidence 999 77765432221 223699999999999765 555 7776654 444432110 11001
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV 539 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~ 539 (629)
+ ...+-.+.. .|.+++ +...+..++++..++++++++.|++. |+++.
T Consensus 266 ----------g---~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~ 312 (431)
T 3ht4_A 266 ----------G---AEAGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTS 312 (431)
T ss_dssp ----------T---TSCSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEE
T ss_pred ----------c---cccCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEec
Confidence 0 011111110 122222 23345678888999999999999987 77774
No 220
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.20 E-value=8.1e-10 Score=119.20 Aligned_cols=311 Identities=12% Similarity=0.081 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC---
Q psy1785 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG--- 333 (629)
Q Consensus 257 ~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG--- 333 (629)
....++.+++++.++ +....+|++|||+++..++..++... | +..+|+.....|.+...+....+
T Consensus 92 ~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~ 159 (427)
T 3fq8_A 92 ALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYT-------G----RDKIIKFEGCYHGHADMFLVKAGSGV 159 (427)
T ss_dssp HHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEEETCCCCSCGGGCSSCCTHH
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh-------C----CCEEEEECCCcCCCCHHHHHhcCCcc
Confidence 344666778888887 45689999999999999998887531 1 34456666666643322111111
Q ss_pred ----C----CC-----CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q psy1785 334 ----L----GS-----DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAE 396 (629)
Q Consensus 334 ----l----g~-----~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~ 396 (629)
+ |. .+++.+|.+ |+++|++++.+. ...+.+|++.-..+..|.+.| +++|+++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~ 231 (427)
T 3fq8_A 160 ATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE 231 (427)
T ss_dssp HHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence 0 00 135555543 899999988652 234567777776677899988 9999999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccC
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~ 474 (629)
||+++++ ++.+. ...... .....++ ..|.++++ |.+++.+..|.++.++ ++.... .....+..
T Consensus 232 ~~~~li~DEv~~g~-~~g~~~------~~~~~~~--~~di~t~s--K~~~~G~~~G~~~~~~-~~~~~~-~~~~~~~~-- 296 (427)
T 3fq8_A 232 HDALLVFDEVITGF-RIAYGG------VQEKFGV--TPDLTTLG--KIIGGGLPVGAYGGKR-EIMQLV-APAGPMYQ-- 296 (427)
T ss_dssp TTCEEEEECTTTBT-TTBTTH------HHHHTTC--CCSEEEEC--GGGGTTSSCEEEEECH-HHHTTB-TTTSSBCC--
T ss_pred cCCEEEEecccccc-ccCcch------hhHhcCC--CCChhhhh--hhhhCCcceEEEEEcH-HHHHhh-ccCCCccc--
Confidence 9999999 77654 221100 0011122 25777776 9998656688887654 444322 11000000
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEE
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFW 551 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~ 551 (629)
.+. .++..........+++.+..++ +.++..++.+++++.|++.. ++.... ......+.|.
T Consensus 297 ---------~~t---~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~ 360 (427)
T 3fq8_A 297 ---------AGT---LSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHAACG-GQVSGMFGFF 360 (427)
T ss_dssp ---------CCT---TTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEE
T ss_pred ---------cCC---CCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCCeEE-EEeeeEEEEE
Confidence 000 0111222333334444444444 44555556666666665421 221111 1222344454
Q ss_pred eeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 552 YIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 552 ~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
+....... .......-.....++.+.|.++|.++ . +. + ..|+++. ..+|++|++.+++.|+++.+++
T Consensus 361 ~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~Gi~v-~--~~-~---~~r~~~~-~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 361 FTEGPVHN---YEDAKKSDLQKFSRFHRGMLEQGIYL-A--PS-Q---FEAGFTS-LAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp SSSCCCCS---HHHHTTSCHHHHHHHHHHHHHTTEEC-C--SS-T---TSCEECC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred EecCcccc---ccccccccHHHHHHHHHHHHHCCcEE-e--cC-C---CCCEEee-CcCCHHHHHHHHHHHHHHHHhC
Confidence 43211110 00000000011246778888899543 2 11 1 1255663 7889999999999999887653
No 221
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.19 E-value=2.6e-09 Score=115.31 Aligned_cols=310 Identities=13% Similarity=0.119 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCC-
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS- 336 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~- 336 (629)
...++.++++++++ .....+|++|||+++..++..++... | ...+|......|.+...+....+.|.
T Consensus 94 ~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~-------~----~~~ii~~~~~yhg~~~~~~~~~~~~~~ 161 (429)
T 4e77_A 94 MEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYT-------G----RDKIIKFEGCYHGHADCLLVKAGSGAL 161 (429)
T ss_dssp HHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEETTCCCC--------------
T ss_pred HHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhh-------C----CCEEEEEcCccCCCChhhhhhcCCccc
Confidence 33555667888876 44679999999999999999887531 1 24466666677766553332222110
Q ss_pred ---------------CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHc
Q psy1785 337 ---------------DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEY 397 (629)
Q Consensus 337 ---------------~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~ 397 (629)
..+..++. .|+++|+++|++. +....+|++.-.....|.+.| +++|+++|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~ 233 (429)
T 4e77_A 162 TLGQPNSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF 233 (429)
T ss_dssp ----CCCTTSCGGGGTTEEEECT-----TCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH
T ss_pred ccCCCCcCCCCCccCCceeecCC-----CCHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 02333332 2899999988752 224556666655566788888 99999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ ++.+. ...... .....++ ..|.++++ |.+++.+..|+++.++ ++..........+.
T Consensus 234 ~~lli~DEv~~g~-r~g~~~------~~~~~~~--~pdi~t~s--K~~~~G~~~G~~~~~~-~~~~~l~~~~~~~~---- 297 (429)
T 4e77_A 234 GALLIIDEVMTGF-RVALAG------AQDYYHV--IPDLTCLG--KIIGGGMPVGAFGGRR-EVMNALAPTGPVYQ---- 297 (429)
T ss_dssp TCEEEEEETTTBT-TTBTTC------HHHHTTC--CCSEEEEE--GGGGTTSCCEEEEECH-HHHTTBTTTSSBCC----
T ss_pred CCEEEEeccccCc-ccCcch------HHHhcCC--CCCeeeec--ccccCCCCeEEEEECH-HHHHHhccCCCccc----
Confidence 999999 67654 222110 0111122 25776665 9988767788877754 34332110000000
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCceEEEEEe
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECTNISFWY 552 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~~v~F~~ 552 (629)
.+. .+...........+++.+..+. ..++..++.+++++.|++. .++.... ...-..+.+.+
T Consensus 298 --------~~t---~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~ 362 (429)
T 4e77_A 298 --------AGT---LSGNPIAMAAGFACLTEISQVG---VYETLTELTDSLATGLRHAAKEENIPLVV-NHVGGMFGLFF 362 (429)
T ss_dssp ----------C---CCCCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEEC
T ss_pred --------cCC---CCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEeeeEEEEEE
Confidence 000 0112223333344455443333 4455555666666666542 1221111 12233444544
Q ss_pred eCCCCCCCCchhhHHHHH-hhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 553 IPPSLRGKEDQADFNELL-HKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 553 ~p~~~~~~~~~~~~~~~l-~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
.... ... +......- .....++.+.|.++|.++ .. . +. ..+| + +..+|++|++.+++.|+++.+++
T Consensus 363 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~v-~~--~-~~-~~~~--~-~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 363 TNAD--TVT-CYQDVMNCDVERFKRFFHLMLEEGVYL-AP--S-AF-EAGF--M-SLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp CSSS--CCC-SHHHHHTSCHHHHHHHHHHHHHTTEEC-CS--S-TT-SCEE--C-CTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ccCc--ccc-cccccccccHHHHHHHHHHHHHCCeEE-ee--c-CC-CCEE--E-eccCCHHHHHHHHHHHHHHHHhC
Confidence 3211 000 00000000 012246778888898543 21 1 11 2344 4 36789999999999999987653
No 222
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.13 E-value=3.7e-09 Score=117.82 Aligned_cols=342 Identities=10% Similarity=0.021 Sum_probs=188.7
Q ss_pred ChhHHHHHHHHHHHHHHHhC--CCC---CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHH
Q psy1785 252 SPVFSLMEEHVLAQMRTIVG--FQG---GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIK 326 (629)
Q Consensus 252 ~p~~~~~E~~~~~~l~~l~G--~~~---~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~ 326 (629)
......+++.+.+++.+..+ ++. .+.++|+|+|+++..++.+...+.+ ..|...|++..-+|.++.
T Consensus 137 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l---------~~~gd~Viv~~p~~~~~~ 207 (533)
T 3f6t_A 137 DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL---------LKKGDKIAINEPIFTPYL 207 (533)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS---------SCTTCEEEEESSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc---------cCCcCEEEEcCCCcHHHH
Confidence 34456677777777766623 222 4789999999998877765332211 024457888899999999
Q ss_pred HHHHHcCCCCCCEEEEecC----CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHH---HHHHHHH-HcC
Q psy1785 327 KLAAFEGLGSDNVYLIKTD----ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIP---AIADICA-EYD 398 (629)
Q Consensus 327 kaa~~lGlg~~~v~~V~~d----~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~---ei~~i~~-~~~ 398 (629)
.++...|. +++.++++ +++.+|+++|++++.. .+.+|+.+..++.+|.+-|.+ +|+++|+ +++
T Consensus 208 ~~~~~~g~---~~~~v~~~~~~~~~~~~d~~~l~~~l~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~ 278 (533)
T 3f6t_A 208 RIPELKDY---ELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPK 278 (533)
T ss_dssp TSGGGGGS---EEEEECCCEETTTTSEECHHHHHHHSCT------TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCC---eEEEEEecCCcccCCCCCHHHHHHHhCC------CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCC
Confidence 88888888 89999885 3578999999988743 356677777888899987666 7778888 689
Q ss_pred CeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCC------
Q psy1785 399 MADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASAS------ 469 (629)
Q Consensus 399 ~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~------ 469 (629)
+++++ +|+....-.. ... ....+.+.++.+++|.++.| .-+|+++.++...+......-++
T Consensus 279 ~~li~De~y~~~~~~~~--------~~~--~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~ 348 (533)
T 3f6t_A 279 LMIISDEVYGAFVPNFK--------SIY--SVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQL 348 (533)
T ss_dssp CEEEEECTTGGGSTTCC--------CHH--HHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHH
T ss_pred CEEEEcCCccccccCcc--------CHh--hcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHH
Confidence 99999 6764332111 000 01112678999999999844 22788888776443322111000
Q ss_pred ---ccccCCcCCCc---------ccCCCCccCCCCCCc-chHHHHHHHHhc--------ChhhHHHHHHHHHHHHHHHHH
Q psy1785 470 ---YLFQKDKFYDT---------KYDSGDKHIQCGRKP-DVLKFWFMWKAK--------GTDGLEAHIDKSFDNAKYFTD 528 (629)
Q Consensus 470 ---yl~~~~~~~~~---------~~~~~~~~~~~sr~~-~al~~w~~l~~~--------G~~G~~~~~~~~~~la~~l~~ 528 (629)
|-.-...+... ..........+.... .+....+++..+ ...-+++..++..+..++|.+
T Consensus 349 ~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~ 428 (533)
T 3f6t_A 349 HKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHD 428 (533)
T ss_dssp HHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 000000000111111 111111122322 234566677777788889999
Q ss_pred HHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHh--hHHHHHHHHH-HhcCcEEEeeeecCCccceEEEee
Q psy1785 529 KIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLH--KVAPKIKERM-MKSGSMMITYQPIHALPNFFRLVL 605 (629)
Q Consensus 529 ~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~--~~~~~i~~~l-~~~G~~~i~~~~~~~~~~~lR~~~ 605 (629)
.|. . +++.. .|..+.+++--.+.-.. .....++...+. .-..++..++ .+.|..+..........+++|+++
T Consensus 429 ~L~-~-~~~~~--~~~~g~~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~ 503 (533)
T 3f6t_A 429 AMQ-A-PKDET--DTNTHYYSLIDIYRLAE-KIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQ 503 (533)
T ss_dssp HHT-C-CCCCS--TTBCCSEEEEEHHHHHH-HHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEES
T ss_pred hcC-C-Ccccc--CCCceEEEEEehHhhhh-hccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEE
Confidence 996 4 55532 35544443321110000 000000000000 0011333344 456764332222211135899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 606 QNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 606 ~n~~~t~edid~l~~~i~~l~~~ 628 (629)
+ ..++++|+.+++.|.++.++
T Consensus 504 a--~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 504 A--NLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp S--SSCHHHHHHHHHHHHHHHHH
T ss_pred e--eCCHHHHHHHHHHHHHHHHH
Confidence 5 36799999999999887653
No 223
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.11 E-value=1.3e-09 Score=117.93 Aligned_cols=309 Identities=14% Similarity=0.090 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH-------
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA------- 330 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~------- 330 (629)
...++.++++++++ .....+|++|||+++..++.+||... .+..+|+.....|.....+..
T Consensus 97 ~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 164 (434)
T 2epj_A 97 AEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYT-----------GRDLILKFDGCYHGSHDAVLVAAGSAAA 164 (434)
T ss_dssp HHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEEETCCCCSSGGGSEECC----
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh-----------CCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence 34556677888874 33578999999999999999887431 123455556566643221110
Q ss_pred ------HcCCC---CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHc
Q psy1785 331 ------FEGLG---SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEY 397 (629)
Q Consensus 331 ------~lGlg---~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~ 397 (629)
..|+. ..+++.+|. .|+++|+++|.+. +..+.+|++.-..+.+|.+-| +++|+++|++|
T Consensus 165 ~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (434)
T 2epj_A 165 HYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES 236 (434)
T ss_dssp --CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc
Confidence 01221 024667764 3899999998753 123455666555456898888 99999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ ++.+. ...... ....+++ ..|.+++ +|+++..+..|+++.++ ++.... ......
T Consensus 237 g~~lI~DEv~~g~-~~g~~~------~~~~~~~--~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l-~~~~~~----- 298 (434)
T 2epj_A 237 GALLILDEVVTGF-RLGLEG------AQGYFNI--EGDIIVL--GKIIGGGFPVGAVAGSR-EVMSLL-TPQGKV----- 298 (434)
T ss_dssp TCEEEEEETTTTT-TSSTTH------HHHHHTC--CCSEEEE--EGGGGTTSSCEEEEECH-HHHTTB-TTTSSB-----
T ss_pred CCEEEEEcchhce-eCCcch------hhHHhCC--CCCeeee--cchhcCCcceeeeeecH-HHHHhh-ccCCCc-----
Confidence 999999 66654 221100 0011122 2677655 59998756688888875 343321 110000
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEEe
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFWY 552 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~~ 552 (629)
+..+.+ ++.......+..+++.+..+ +..++..++.+++++.|++.. ++.... .+..+.+.+.+
T Consensus 299 ------~~~~t~---~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~ 365 (434)
T 2epj_A 299 ------FNAGTF---NAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTI-NRVESMMQLFI 365 (434)
T ss_dssp ------CCCCTT---TTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEE-EEETTEEEEEE
T ss_pred ------ccCCCC---CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEEE
Confidence 000000 11122223333344433222 345666677888888887641 332111 22334455554
Q ss_pred eCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 553 IPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 553 ~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
.....+.. .+....-.....++.+.|.++|.++ ... +. ..+| +. ..+|++|++.+++.|+++.++
T Consensus 366 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~---~~-~~~~--~~-~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 366 GVEEVSNA---AQARKADKKFYVKLHEEMLRRGVFI-APS---NL-EAVF--TG-LPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp TCSCCSSH---HHHTTSCHHHHHHHHHHHHHTTEEC-CSS---TT-SCEE--CC-TTCSHHHHHHHHHHHHHHHHH
T ss_pred eCCCcccc---hhccccCHHHHHHHHHHHHHCCeEE-ecc---CC-CcEE--Ee-ccCCHHHHHHHHHHHHHHHHH
Confidence 32111000 0000000011246778888888543 221 11 2344 43 678999999999999887543
No 224
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.09 E-value=7.5e-09 Score=110.88 Aligned_cols=307 Identities=10% Similarity=0.038 Sum_probs=173.7
Q ss_pred cccccChhHHHHHHHHHHHHHHHhCCC-----CCCe--EEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcC
Q psy1785 247 YTYEVSPVFSLMEEHVLAQMRTIVGFQ-----GGDG--IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSE 319 (629)
Q Consensus 247 ~~~~~~p~~~~~E~~~~~~l~~l~G~~-----~~~g--~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~ 319 (629)
..|...+....+.+.+.+++ .|.. .... ..+.||+.++..+....+.- . .|...|++..
T Consensus 73 ~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~-~----------~~gd~Vlv~~ 138 (409)
T 4eu1_A 73 MDYAPVTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF-V----------ANCNRIYGPD 138 (409)
T ss_dssp CCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT-S----------SSCCEEEEES
T ss_pred ccCCCCCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHHHHHHHHHHh-c----------CCCCEEEEeC
Confidence 33443444445555544444 3554 3344 34889998876554433221 0 2335677788
Q ss_pred CcchHHHHHHHHcCCCCCCEEEEec--CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHH
Q psy1785 320 DAHYSIKKLAAFEGLGSDNVYLIKT--DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADIC 394 (629)
Q Consensus 320 ~~H~Si~kaa~~lGlg~~~v~~V~~--d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~ 394 (629)
-+|.++..+++..|. +++.+|. ++++.+|+++|++++.+. .....+++.+...+.+|.+-+ +++|+++|
T Consensus 139 p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~ 212 (409)
T 4eu1_A 139 VGYPNHESIFAKAGM---ELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVI 212 (409)
T ss_dssp SCCTHHHHHHHHTTC---EEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHcCC---eEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHH
Confidence 889999999999998 9999998 355789999999998642 123556666777888898866 55589999
Q ss_pred HHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEE--EEeccchhhhhhcCCCC
Q psy1785 395 AEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVF--LTRHQSVLTECHSASAS 469 (629)
Q Consensus 395 ~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~l--l~r~~~~l~~~~~~~~~ 469 (629)
+++|+++++ +|.....-..+.+...+.... +... -..++.++.|.++.| ..+|.+ ++.++........
T Consensus 213 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~-~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~---- 285 (409)
T 4eu1_A 213 KRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV--DMVP-NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVS---- 285 (409)
T ss_dssp HHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH--TTSS-CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHH----
T ss_pred HhCCcEEEEeccccccccCCcccchHHHHHHH--hhCC-cEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHH----
Confidence 999999999 766643211000000000000 1111 235667888999854 346776 5666542111100
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCCC---cEE
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRPG---FKL 538 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~g---~~l 538 (629)
.+..... .+..+. ..+..+++...+. .+.+++..++..++.+++.+.|++... +++
T Consensus 286 ~~~~~~~----------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 352 (409)
T 4eu1_A 286 QLALLIR----------PMYNNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSH 352 (409)
T ss_dssp HHHHHHH----------HHHSSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred HHHHHHh----------hhcCCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcce
Confidence 0000000 000011 1233333332222 234667778888899999999998621 554
Q ss_pred EccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCCccceEEEeecCCCCCHHHHHH
Q psy1785 539 VLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDY 617 (629)
Q Consensus 539 ~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~ 617 (629)
.. |..+.+.| . .+. .++..++. +.|..+ . + + .|++++ . .+++||++
T Consensus 353 ~~--~~~~~~~~-~---~~~----------------~~~~~~ll~~~gv~v-~--p--~----~Ri~~~-~-~~~~~i~~ 399 (409)
T 4eu1_A 353 IE--RQVGMMAY-T---GLT----------------REQVELLRSEYHIYM-T--L--N----GRAAVS-G-LNSTNVEY 399 (409)
T ss_dssp HH--HSCSSEEE-C---CCC----------------HHHHHHHHHHHCEEC-C--T--T----CEEEGG-G-CCTTTHHH
T ss_pred ec--CCceEEEE-e---CCC----------------HHHHHHHHHcCCEEE-c--C--C----CEEEEE-e-cCHhhHHH
Confidence 32 44444444 1 110 02233444 557532 2 1 1 488885 3 45667999
Q ss_pred HHHHHHHHh
Q psy1785 618 FIDEIERLG 626 (629)
Q Consensus 618 l~~~i~~l~ 626 (629)
++++|+++.
T Consensus 400 ~~~~l~~~l 408 (409)
T 4eu1_A 400 VSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998864
No 225
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.09 E-value=6e-09 Score=113.37 Aligned_cols=307 Identities=13% Similarity=0.061 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH----
Q psy1785 255 FSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA---- 330 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~---- 330 (629)
...++.++.+++++.++ +....++++||++++..++.+||... .+..+|+.....|....-+..
T Consensus 95 ~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~ 162 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFT-----------GRRMILRFEGHYHGWHDFSASGYNS 162 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHH-----------CCCEEEEECC---------------
T ss_pred CCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEEcCCcCCCchhhHhhcCC
Confidence 34567788888988886 44678999999999999999887421 134455555556643222111
Q ss_pred ------HcCCCC---CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHc
Q psy1785 331 ------FEGLGS---DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEY 397 (629)
Q Consensus 331 ------~lGlg~---~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~ 397 (629)
..|+.. ..++.+|. .|+++|+++|.+. +..+.+|++.-..+.+|.+-| +++|+++|++|
T Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~ 234 (453)
T 2cy8_A 163 HFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY 234 (453)
T ss_dssp -------------CGGGEEEECT-----TCHHHHHHHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT
T ss_pred ccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 123210 13555553 3899999998753 113455655544455798777 99999999999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ ++.+. ...... .....++ ..|.+++ .|+++.++..|+++.++ ++.... ... . ..
T Consensus 235 g~~lI~DEv~~g~-~~g~~~------~~~~~~~--~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l-~~~---~--~~ 296 (453)
T 2cy8_A 235 GALFILDEVISGF-RVGNHG------MQALLDV--QPDLTCL--AKASAGGLPGGILGGRE-DVMGVL-SRG---S--DR 296 (453)
T ss_dssp TCEEEEECTTTTT-TTCTTH------HHHHHTC--CCSEEEE--EGGGGTTSSCEEEEECH-HHHTTS-SSC---C----
T ss_pred CCEEEEecCcccc-ccCchh------hhHHhCC--CCcEEEE--ChhhhCCcceEEEechH-HHHHHh-ccc---c--CC
Confidence 999999 67654 222100 0011122 2576654 59998767789998875 343321 100 0 00
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHhcCC---CcEEEccCCCceEEEEE
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA-KGTDGLEAHIDKSFDNAKYFTDKIRHRP---GFKLVLDEPECTNISFW 551 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~-~G~~G~~~~~~~~~~la~~l~~~L~~~~---g~~l~~~~p~~~~v~F~ 551 (629)
. ....+. -++.......+..+++. + .++ ..++..++.+++++.|++.. ++.... .+....+.+.
T Consensus 297 ~----~~~~~t---~~~n~~~~aa~~aal~~~~-~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~ 364 (453)
T 2cy8_A 297 K----VLHQGT---FTGNPITAAAAIAAIDTIL-EDD---VCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGFHLM 364 (453)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHH-HTT---HHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEEEEE
T ss_pred C----ceeCCC---CCCCHHHHHHHHHHHHHHh-hhh---HHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEE
Confidence 0 000000 01112223333344544 3 333 45566667788877776541 332112 2344455555
Q ss_pred eeC-----C----CCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHH
Q psy1785 552 YIP-----P----SLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 622 (629)
Q Consensus 552 ~~p-----~----~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i 622 (629)
+.+ . ..+..... + .....++.+.|.++|.++ . + . ..+| + +...+++||+++++.|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~l~~~Gv~v-~--~--~--~~~~--l-~~~~t~~~i~~~l~~l 428 (453)
T 2cy8_A 365 PGLPPNTTDTGSITRAEVARP-D-----VKMIAAMRMALILEGVDI-G--G--R--GSVF--L-SAQHEREHVEHLVTTF 428 (453)
T ss_dssp ETSCTTCCCCHHHHTTCSCCC-C-----HHHHHHHHHHHHHTTEEC-B--T--T--TEEE--C-CTTCCHHHHHHHHHHH
T ss_pred Eeccccccccccccccccccc-c-----HHHHHHHHHHHHHCCeEE-e--C--C--CCEE--e-eccCCHHHHHHHHHHH
Confidence 432 0 00000000 0 001235777888888543 2 2 1 1244 4 3788999999999999
Q ss_pred HHHhh
Q psy1785 623 ERLGH 627 (629)
Q Consensus 623 ~~l~~ 627 (629)
+++.+
T Consensus 429 ~~~l~ 433 (453)
T 2cy8_A 429 DRVLD 433 (453)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 226
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=98.92 E-value=8.4e-10 Score=122.40 Aligned_cols=285 Identities=18% Similarity=0.182 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhcccccCCcccccccc
Q psy1785 91 VRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQLF 170 (629)
Q Consensus 91 ~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~~l~ 170 (629)
.-.++....+.|.+. .- .....+.-+-..+-.-.++...++.++|++|.+.+++++++++++.++++++||+||++++
T Consensus 26 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~ 103 (511)
T 3vp6_A 26 QFLLEVVDILLNYVR-KT-FDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLS 103 (511)
T ss_dssp HHHHHHHHHHHHHHH-HH-TCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSS
T ss_pred HHHHHHHHHHHHHHH-hc-ccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEeec
Confidence 445667777777765 32 2222211122222233333334678999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHhhccCCCCC------CCCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHHHHHHh-c-
Q psy1785 171 SSKVNEWVNPEELEKKLELGFNAG------PSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADA-L- 242 (629)
Q Consensus 171 s~~v~~~~~~~~l~~~~~~~lp~~------~~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~-~- 242 (629)
+....+.+..+.+...++...... ..-++++.+|+.++++.... ...+.+.++.+...+.+-..... .
T Consensus 104 ~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~----~~~~~~t~ggt~a~~~al~~a~~~~~ 179 (511)
T 3vp6_A 104 TGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK----DGDGIFSPGGAISNMYSIMAARYKYF 179 (511)
T ss_dssp CCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS----SCEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCC----CCceEECCchHHHHHHHHHHHHHHhh
Confidence 988777777888887776432221 12446777888888755421 12355566655554444222211 0
Q ss_pred ------C----CCccccccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCC
Q psy1785 243 ------N----PSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPR 312 (629)
Q Consensus 243 ------n----~~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~ 312 (629)
+ +....+...+ ......+.++++|.........+... .......++++++.+.+++|. .|+
T Consensus 180 ~~~~~~G~~~~~~~~v~~s~~-----~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~--~~~ 250 (511)
T 3vp6_A 180 PEVKTKGMAAVPKLVLFTSEQ-----SHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGY--VPF 250 (511)
T ss_dssp THHHHHCGGGSCCEEEEEETT-----SCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTC--EEE
T ss_pred hhhhhcCcccCCCeEEEECCC-----chHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCC--CcE
Confidence 0 0000000001 12223456667775322333333211 111122223333333344453 356
Q ss_pred eEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHH
Q psy1785 313 LVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIAD 392 (629)
Q Consensus 313 ~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~ 392 (629)
++++++.++ ..|.+| +|+ .|.+.+++...|+||++++|.....+ ++...
T Consensus 251 ~vv~~~~~~------------------------~~G~vd--~l~-~I~~ia~~~~~~lhvD~a~~~~~~~~----~~~~~ 299 (511)
T 3vp6_A 251 YVNATAGTT------------------------VYGAFD--PIQ-EIADICEKYNLWLHVDAAWGGGLLMS----RKHRH 299 (511)
T ss_dssp EEEEEBSCS------------------------SSCCBC--CHH-HHHHHHHHHTCEEEEEETTGGGGGGC----TTTGG
T ss_pred EEEEecCCC------------------------CCcccc--cHH-HHHHHHHHcCCEEEEEccchhhHhhC----hhhhh
Confidence 677766664 456665 343 34445555669999999998765533 22222
Q ss_pred HHHHcCCeEEEecCccccccccccccccc
Q psy1785 393 ICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 393 i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
.+.+....+++++++|+++..|.+|+.++
T Consensus 300 ~~~g~~~aDsv~~~~hK~l~~p~g~g~l~ 328 (511)
T 3vp6_A 300 KLNGIERANSVTWNPHKMMGVLLQCSAIL 328 (511)
T ss_dssp GGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred hccCCccCCEEEECcccccCCCcCeEEEE
Confidence 23333335677899999998889999765
No 227
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=98.90 E-value=8.1e-08 Score=103.41 Aligned_cols=306 Identities=12% Similarity=0.098 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHH------
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAF------ 331 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~------ 331 (629)
...++.++++++++ +....++++||++++..++..||... .+..+|+.....|.....+...
T Consensus 93 ~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 160 (424)
T 2e7u_A 93 LEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT-----------GRPYIVKFRGNYHGHADGLLVEAGSGAL 160 (424)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence 34566677788775 44678999999999999999877531 1344566666666533222111
Q ss_pred -------cCCC---CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHc
Q psy1785 332 -------EGLG---SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEY 397 (629)
Q Consensus 332 -------lGlg---~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~ 397 (629)
.|+. ..+++.+|. .|+++|+++|++. +..+.+|++.-....+|.+-| +++|+++ ++|
T Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~ 231 (424)
T 2e7u_A 161 TLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY 231 (424)
T ss_dssp CBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG
T ss_pred ccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc
Confidence 1210 024666664 3899999998752 113445555544444788777 9999999 999
Q ss_pred CCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCC
Q psy1785 398 DMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKD 475 (629)
Q Consensus 398 ~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~ 475 (629)
|+++++ ++.+. ...... .....++ ..|.+++ .|+++..+..|+++.++ ++..........+.
T Consensus 232 g~~lI~DEv~~g~-~~g~~~------~~~~~~~--~~di~s~--sK~l~~G~~~G~~~~~~-~~~~~~~~~~~~~~---- 295 (424)
T 2e7u_A 232 GVLLIADEVMTGF-RLAFGG------ATELLGL--KPDLVTL--GKILGGGLPAAAYAGRR-EIMEKVAPLGPVYQ---- 295 (424)
T ss_dssp TCEEEEECTTTTT-TSSTTH------HHHHHTC--CCSEEEE--CGGGGTTSSCEEEEECH-HHHTTBTTTSSBCC----
T ss_pred CCEEEEecCcccc-ccchhH------HHHHhCC--Ccchhhh--hhhhhCCcceEEEEEcH-HHHhhhcccCCccc----
Confidence 999999 77754 222100 0011122 2676654 69998766788888876 34332110000000
Q ss_pred cCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCceEEEEEe
Q psy1785 476 KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECTNISFWY 552 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~~v~F~~ 552 (629)
...+ ++.......+..+++.+.. .++..++..++.+++++.|++. .++.... .+..+.+.+.+
T Consensus 296 --------~~t~---~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~ 361 (424)
T 2e7u_A 296 --------AGTL---SGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV-NRVGSMITVFF 361 (424)
T ss_dssp --------CCTT---CSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEES
T ss_pred --------CCCC---CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EeeceEEEEEE
Confidence 0000 1111222233334443322 1446677777888888888764 1332111 22333444544
Q ss_pred eCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHH
Q psy1785 553 IPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625 (629)
Q Consensus 553 ~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l 625 (629)
.+...... .+....-.....++.+.|.++|.++ ... +. ..+| + +...|++|++.+++.|+++
T Consensus 362 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~---~~-~~~~--~-~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 362 TEGPVVTF---QDARRTDTELFKRFFHGLLDRGIYW-PPS---NF-EAAF--L-SVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp SSSCCCSH---HHHTTSCHHHHHHHHHHHHTTTEEC-CSS---SS-SCEE--C-CTTCCHHHHHHHHHHHHHH
T ss_pred eCCCCcch---hhhcccCHHHHHHHHHHHHHCCeEE-ecc---CC-CceE--e-eccCCHHHHHHHHHHHHHh
Confidence 22110000 0000000011246778888888543 211 11 2244 4 3678999999999999875
No 228
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=98.87 E-value=2.1e-07 Score=101.12 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC--C
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG--S 336 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg--~ 336 (629)
|.+..+.+++++.- .....|+++||+||+.|++.||... | ...+|...+.-|-...-+....+-. .
T Consensus 129 ~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~ 196 (454)
T 4ao9_A 129 EGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFT-------G----RRKIVVFSGGYHGGVLGFGARPSPTTVP 196 (454)
T ss_dssp HHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHH-------T----CCEEEEETTCBCSTTCBBSSSBCTTSCC
T ss_pred HHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcc-------c----CCeEEEEeCCcCCccccccccccCccCC
Confidence 34455567776642 2468899999999999999999752 2 2334555666665332111111100 1
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 337 ~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
.....+|. -|++.+++.|++. +.....|++---....|.+-| |++++++|++||+++++ ...| .
T Consensus 197 ~~~~~~p~-----nd~~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R 266 (454)
T 4ao9_A 197 FDFLVLPY-----NDAQTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--R 266 (454)
T ss_dssp SEEEEECT-----TCHHHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--G
T ss_pred CCcccCCC-----chHHHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--C
Confidence 13344443 4788888888753 223334444433444577777 99999999999999999 3333 1
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCC
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 490 (629)
...-. -...+|+. .|.+++. |.++.-++.|.+..+++ ... .+........ ..+ |+
T Consensus 267 ~G~~~------a~e~~gv~--PDi~t~g--K~lggG~Piga~~~~~e-i~~-~~~~~~~~~~----------h~~--T~- 321 (454)
T 4ao9_A 267 LAPHG------LANKLGIR--SDLTTLG--KYIGGGMSFGAFGGRAD-VMA-LFDPRTGPLA----------HSG--TF- 321 (454)
T ss_dssp GSTTC------HHHHHTCC--CSEEEEE--GGGGTTSSCEEEEECHH-HHG-GGCTTTCSCC----------CCC--TT-
T ss_pred Ccccc------chhccCCC--CcEEEec--cccCCCCcceeeeeHHH-HHH-HHhhccCCcc----------ccC--CC-
Confidence 11100 01111342 5888765 77766677888888774 332 2211111010 011 11
Q ss_pred CCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCc--EEEccCCCceEEEEEeeCCCCCCCCchhh
Q psy1785 491 CGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGF--KLVLDEPECTNISFWYIPPSLRGKEDQAD 565 (629)
Q Consensus 491 ~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~--~l~~~~p~~~~v~F~~~p~~~~~~~~~~~ 565 (629)
.+.+....+...+|+.+-.++ ..++..++.++|+++|+++ .++ ++-. .-..+.+.+.....+...+...
T Consensus 322 ~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg---~G~m~gi~f~~~~~~~~~~~~~ 395 (454)
T 4ao9_A 322 NNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLNALCANEGVAMQFTG---IGSLMNAHFVQGDVRSSEDLAA 395 (454)
T ss_dssp TTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE---ETTEEEEESCCSCCCSGGGGTT
T ss_pred CCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHhhCCCCEEEee---eceEEEEEEecCCCCCHHHHHh
Confidence 223334444556677665554 4455666777777777653 111 2111 1122334333322222111000
Q ss_pred HHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 566 FNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 566 ~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
... ++...+...|.++|.+ +. + .+ ++.++ ...|++|||+++++|+++..+
T Consensus 396 ~d~---~~~~~~~~~ll~~Gv~-~~--p-~~-----~~~~s-~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 396 VDG---RLRQLLFFHLLNEDIY-SS--P-RG-----FVVLS-LPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp CCH---HHHHHHHHHHHHTTEE-CC--T-TC-----EEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHHHCCEE-Ec--C-CC-----CEEEe-CCCCHHHHHHHHHHHHHHHHh
Confidence 011 1234567788899953 22 1 11 22343 567999999999999987543
No 229
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=98.85 E-value=2.1e-06 Score=93.51 Aligned_cols=311 Identities=14% Similarity=0.096 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhCCCC-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCC---
Q psy1785 260 EHVLAQMRTIVGFQG-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG--- 335 (629)
Q Consensus 260 ~~~~~~l~~l~G~~~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg--- 335 (629)
.++.+.+.+++..+. ....|+++||+||..|++.||... | ...++...+.-|-...-+....+-.
T Consensus 110 ~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t-------~----r~~ii~~~~~yHG~t~~als~t~~~~~~ 178 (456)
T 4atq_A 110 VAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT-------G----RDAVVAFDHAYHGRTNLTMALTAKAMPY 178 (456)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-------C----CCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred HHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh-------c----CCeEEEEecccCCccccccccccCcccc
Confidence 344556777765432 346789999999999999999752 2 2345666677777655454443321
Q ss_pred -------CCCEEEEecCCC------CCCCHHHHHHHHHHHHhC--CCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q psy1785 336 -------SDNVYLIKTDAR------GRMLPESLRGEIQRTLAE--GAVPFMVSATSGTTVLGAFDP----IPAIADICAE 396 (629)
Q Consensus 336 -------~~~v~~V~~d~~------g~~d~~~Le~~i~~~~~~--g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~ 396 (629)
...+..+|.... ...+.+.+++.++...+. +.....|++---....|.+-| +++++++|++
T Consensus 179 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~ 258 (456)
T 4atq_A 179 KTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKE 258 (456)
T ss_dssp TTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred ccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhh
Confidence 235777775421 223455565555543321 223334444322333455544 8999999999
Q ss_pred cCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccC
Q psy1785 397 YDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQK 474 (629)
Q Consensus 397 ~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~ 474 (629)
||+.+++ ...|..-... +.-..++|+. .|.+++. |.++.-+..|.++.+++ .... +. +...
T Consensus 259 ~gillI~DEV~tG~GRtG~------~~a~e~~gv~--PDivt~g--K~lggg~P~~av~~~~~-i~~~-~~--~~~~--- 321 (456)
T 4atq_A 259 KGIVFIADEVQSGFCRTGE------WFAVDHEGVV--PDIITMA--KGIAGGLPLSAITGRAD-LLDA-VH--PGGL--- 321 (456)
T ss_dssp HTCEEEEECTTTTTTTTSS------SSGGGGTTCC--CSEEEEC--GGGGTTSSCEEEEEEHH-HHTT-SC--TTSS---
T ss_pred cCCceEecccccccCCccc------cccccccCCC--Cchhhhh--hcccCcCCceeeEecHH-HHhc-cc--ccCC---
Confidence 9999999 3333211111 0011222442 6999987 77766677888998874 3221 11 1100
Q ss_pred CcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC----CC--cEEEccCC--Cce
Q psy1785 475 DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR----PG--FKLVLDEP--ECT 546 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~g--~~l~~~~p--~~~ 546 (629)
.+ | -.+.+..+.....+|+.+-.+++.+ +..++.++|.++|+++ +. ..++. +. .-.
T Consensus 322 ---------~~--T-f~gnpla~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~~~~~v~-~VRG~Gl 385 (456)
T 4atq_A 322 ---------GG--T-YGGNPVACAAALAAIDTMEQHDLNG---RARHIEELALGKLRELAAELSAGGGSVVG-DIRGRGA 385 (456)
T ss_dssp ---------CC--S-SSSCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHHHCC-----CEE-EEEEETT
T ss_pred ---------CC--C-CCCChHHHHhhHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHhcccccCCceE-Eeeecce
Confidence 01 1 1233444455555666666666544 4445666666666543 21 11121 11 011
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.+.+..+... ..+ .++..++.+++.++|.++....+ ..+.||+... ...|++|||.+++.|++..
T Consensus 386 ~~giel~~~~~~--~~~-------~~~~~~v~~~~~~~Gvl~~~~g~---~~~~irl~Pp-L~it~~~id~~l~~l~~al 452 (456)
T 4atq_A 386 MLAIELVQPGSK--EPN-------AELTKAVAAACLKEGVIILTCGT---YGNVIRLLPP-LVISDELLIDGLEVLAAAI 452 (456)
T ss_dssp EEEEEEBCTTSC--CBC-------HHHHHHHHHHHHHTTEECEEECT---TSCEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCC--CcC-------HHHHHHHHHHHHHCCCEEEecCC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 233443322111 111 12345788899999975432211 2368999984 6789999999999998875
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 453 ~ 453 (456)
T 4atq_A 453 K 453 (456)
T ss_dssp H
T ss_pred H
Confidence 4
No 230
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=98.83 E-value=7e-10 Score=121.89 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=141.2
Q ss_pred CCCCCChhHHHHHHHHHh-hcccccCCcccccccccccccCCCCHHHHHHhhccCC------CCCCCCHHHHHHHHHHHh
Q psy1785 137 NAGPSSHGKLIDLMKTVI-QYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGF------NAGPSSHAKLIDLMKTVI 209 (629)
Q Consensus 137 p~~~~~~~~ll~~~~~~l-~y~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~l------p~~~~~~~~il~~l~~~~ 209 (629)
|++|.+.+++++++.+.+ ++.++|.||+||+++++.+..+.+..+.+...++... |...+.|+++++|+.+++
T Consensus 47 p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~ 126 (475)
T 3k40_A 47 PEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKML 126 (475)
T ss_dssp CSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHh
Confidence 578999999999999765 7788899999999999988877777888888776321 222235667788888888
Q ss_pred cccccC---CCCccccccCCCCChHHHHHHHHHHhc--------CCCccccccCh----hHHHHHHHHHHHHHHHhCCCC
Q psy1785 210 QYSVKT---GHPYFVNQLFSSVDPYGLVGQWLADAL--------NPSVYTYEVSP----VFSLMEEHVLAQMRTIVGFQG 274 (629)
Q Consensus 210 ~~~~~~---~~p~~~g~~~s~~~~~~~~~~~lt~~~--------n~~~~~~~~~p----~~~~~E~~~~~~l~~l~G~~~ 274 (629)
+.+... .++...|.+.++.+..++.+-+.+... ++........| .+...+.....+.+++.|..
T Consensus 127 g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~- 205 (475)
T 3k40_A 127 ELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK- 205 (475)
T ss_dssp TCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCE-
T ss_pred CCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCc-
Confidence 654321 111224677777777777664444211 00000000000 01111223334455566652
Q ss_pred CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHH
Q psy1785 275 GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPES 354 (629)
Q Consensus 275 ~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~ 354 (629)
....+... .. ....++++++.+.++.|. .|.+++++.+++ ..|.+| +
T Consensus 206 --~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~--~~~~v~~~~~~t------------------------~~G~~~--~ 252 (475)
T 3k40_A 206 --LRSVQSEN--HR-MRGAALEKAIEQDVAEGL--IPFYAVVTLGTT------------------------NSCAFD--Y 252 (475)
T ss_dssp --EEEECCBT--TB-CCHHHHHHHHHHHHHTTC--EEEEEEEEBSCT------------------------TTCCBC--C
T ss_pred --eEEEECCC--CC-cCHHHHHHHHHHHHHCCC--ccEEEEEEecCC------------------------CCcCcC--C
Confidence 33333211 11 222223333333334442 255566666554 345554 3
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEecCccccccccccccccc
Q psy1785 355 LRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 355 Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
|+ .|.+.+++...|+||++++|...... ++....+.+.+..+++++++|+++..|++|+.++
T Consensus 253 l~-~I~~la~~~~~~lhvD~A~~~~~~~~----~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~ 314 (475)
T 3k40_A 253 LD-ECGPVGNKHNLWIHVDAAYAGSAFIC----PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314 (475)
T ss_dssp HH-HHHHHHHHTTCEEEEECTTGGGGGGS----GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred HH-HHHHHHHHhCCeEEEeHHhHHHHHhC----HhhHHHhcCcccCCEEEECchhccCCCCceEEEE
Confidence 43 34445555679999999987654322 2222222333335777999999999999999765
No 231
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=119.67 Aligned_cols=282 Identities=16% Similarity=0.120 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHh-hcccccCCcccccc
Q psy1785 90 QVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVI-QYSVKTGHPYFVNQ 168 (629)
Q Consensus 90 ~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l-~y~v~t~hP~F~~~ 168 (629)
.....+.+..+.|.+. . +.+..-.+..--.+.. ..+...+ |++|.+.+++++++.+++ ++.++|.||+||++
T Consensus 12 ~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~-~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 84 (481)
T 4e1o_A 12 RERGREMVDYICQYLS-T-VRERRVTPDVQPGYLR-AQLPESA----PEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAY 84 (481)
T ss_dssp HHHHHHHHHHHHHHHH-S-GGGSCSSCCCCTTTTG-GGSCSSC----CSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSS
T ss_pred HHHHHHHHHHHHHHHh-c-cccCCCCCCCCHHHHH-HhcCCCC----CCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 3445667777777765 3 4333333110000100 1111122 678999999999999865 77778899999999
Q ss_pred cccccccCCCCHHHHHHhhccC------CCCCCCCHHHHHHHHHHHhcccccC----CCCccccccCCCCChHHHHHHHH
Q psy1785 169 LFSSKVNEWVNPEELEKKLELG------FNAGPSSHAKLIDLMKTVIQYSVKT----GHPYFVNQLFSSVDPYGLVGQWL 238 (629)
Q Consensus 169 l~s~~v~~~~~~~~l~~~~~~~------lp~~~~~~~~il~~l~~~~~~~~~~----~~p~~~g~~~s~~~~~~~~~~~l 238 (629)
+++++..+.+..+.+...++.. .|...+.++++++|+.++++.+... .++.-.|.+.++.+...+.+-+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ 164 (481)
T 4e1o_A 85 YPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLA 164 (481)
T ss_dssp SCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHH
Confidence 9998887888888888777632 1222245677888998888654321 11112466777777777666443
Q ss_pred HHhc--------CC---------CccccccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchh
Q psy1785 239 ADAL--------NP---------SVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQ 301 (629)
Q Consensus 239 t~~~--------n~---------~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~ 301 (629)
+... ++ ....+-. ..+.....+.+++.|.. ....+.. ........++++++.+
T Consensus 165 ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s-----~~~H~s~~~~~~~~g~~---~~~v~~~--~~~~~d~~~Le~~i~~ 234 (481)
T 4e1o_A 165 ARKNKILEMKTSEPDADESSLNARLVAYAS-----DQAHSSVEKAGLISLVK---MKFLPVD--DNFSLRGEALQKAIEE 234 (481)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHTTEEEEEE-----TTSCHHHHHHHHHHTCE---EEEECCC--TTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccccccccCCeEEEEc-----CcchHHHHHHHHhCCCc---eEEEEcC--CCCcCCHHHHHHHHHH
Confidence 3211 00 0000000 11112222334444432 2333321 1111122222333333
Q ss_pred HHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcc
Q psy1785 302 IKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL 381 (629)
Q Consensus 302 ~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~ 381 (629)
.+++|. .|.+++++.+++ ..|.+| +|++ |.+.+++...|+||++++|....
T Consensus 235 ~~~~g~--~~~~vv~~~~~t------------------------~~G~id--~l~~-I~~la~~~~~~lhvDaA~g~~~~ 285 (481)
T 4e1o_A 235 DKQRGL--VPVFVCATLGTT------------------------GVCAFD--CLSE-LGPICAREGLWLHIDAAYAGTAF 285 (481)
T ss_dssp HHHTTC--EEEEEEEEBSCT------------------------TTCCBC--CHHH-HHHHHHHHTCEEEEECTTGGGGG
T ss_pred HHhCCC--CcEEEEEecCCC------------------------CCcCcC--CHHH-HHHHHHHcCCeEEeehhhHHHHH
Confidence 333442 245555555553 455554 3433 44444455699999999887654
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCccccccccccccccc
Q psy1785 382 GAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 382 G~idpl~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
.. ++...++.+.+..+++.+++|+++..|++|+.++
T Consensus 286 ~~----~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~ 321 (481)
T 4e1o_A 286 LC----PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321 (481)
T ss_dssp GS----GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred hC----hhhHHHhcCcccCCEEEEChHHhcCCCCceEEEE
Confidence 33 2233333333345778999999999999999764
No 232
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=98.81 E-value=1.2e-07 Score=101.06 Aligned_cols=286 Identities=9% Similarity=0.033 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHhCCC--C-CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 256 SLMEEHVLAQMRTIVGFQ--G-GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 256 ~~~E~~~~~~l~~l~G~~--~-~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
..+.+.+.+++. ..|++ . .+.++|+|+++++..++.+.... |- .....|++..-+|.++..+++..
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~--------Gd--~~~~~Vlv~~P~y~~~~~~~~~~ 139 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSSL--------AR--SQPVSVVAAAPFYSTYVEETTYV 139 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHT--------SS--SSSEEEEECSSCCTHHHHHHHTT
T ss_pred HHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcCC--------CC--CCcceEEEcCCCchhHHHHHHHc
Confidence 445555555544 33443 2 47899999999987766654321 20 00125778888999999999999
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--ecCcccc
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKL 410 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A~gg~~l 410 (629)
|. +++.+++|.++ ++ . ..+.+|+.+..++.+|.+-+ +|.+.++++++++++ +|.....
T Consensus 140 g~---~~~~~~~d~~~-l~-------------~-~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~ 199 (391)
T 3bwn_A 140 RS---GMYKWEGDAWG-FD-------------K-KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHY 199 (391)
T ss_dssp CB---TTEEEEEESTT-CC-------------C-CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTT
T ss_pred CC---eEEEecCCHHH-cC-------------C-CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCC
Confidence 98 88888887543 21 0 13556767888999999875 454422223399888 6652110
Q ss_pred ccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccC
Q psy1785 411 LTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHI 489 (629)
Q Consensus 411 ~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 489 (629)
.++ .. ..+.+.++.+++|.++.| .-+|.+++.++.+........ .+..
T Consensus 200 --~~l------~~-----~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~-~~~~----------------- 248 (391)
T 3bwn_A 200 --TPI------TR-----RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYI-IVNS----------------- 248 (391)
T ss_dssp --SCC------CC-----CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHH-HHHH-----------------
T ss_pred --Ccc------cc-----CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHh-cccc-----------------
Confidence 000 10 113678999999998754 225888775544443321100 0000
Q ss_pred CCCCCcchHHHHHHHHhc---------ChhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEccCCCce--------------
Q psy1785 490 QCGRKPDVLKFWFMWKAK---------GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECT-------------- 546 (629)
Q Consensus 490 ~~sr~~~al~~w~~l~~~---------G~~G~~~~~~~~~~la~~l~~~L~~~~g~~l~~~~p~~~-------------- 546 (629)
.+........+..+++.. -.+.+++..++..+..+++.+.|++.+++++.. |.-.
T Consensus 249 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--p~~~~~~f~~~~~~~~g~ 326 (391)
T 3bwn_A 249 IGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPK--YPEAFCNYFGKSLESYPA 326 (391)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCC--CCCEEETTTTEEECCCCS
T ss_pred cCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc--CCccccccccccCCCcce
Confidence 011111111222222221 034577777888889999999999988877643 2211
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.+.+ +.. ..+.+.+.+.|..+..........+++|++++ +++++++.+++.|+++.
T Consensus 327 ~~~~~~-~~~------------------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~---~~~e~i~~~~~~L~~~~ 384 (391)
T 3bwn_A 327 FAWLGT-KEE------------------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML---SREDVFNVFLERLANMK 384 (391)
T ss_dssp EEEEEE-SSS------------------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC---SCHHHHHHHHHHHHSCC
T ss_pred EEEecC-CcH------------------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec---CCHHHHHHHHHHHHHHH
Confidence 122332 110 02345566788655443333211358999996 38999999999998765
Q ss_pred h
Q psy1785 627 H 627 (629)
Q Consensus 627 ~ 627 (629)
+
T Consensus 385 ~ 385 (391)
T 3bwn_A 385 L 385 (391)
T ss_dssp -
T ss_pred H
Confidence 3
No 233
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.66 E-value=2.1e-05 Score=85.98 Aligned_cols=323 Identities=16% Similarity=0.123 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcC-----
Q psy1785 259 EEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG----- 333 (629)
Q Consensus 259 E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lG----- 333 (629)
+.++.+++++++..+-....|+++||+||..|++.||... .++|.+.. ..+|...+.-|-...-++...|
T Consensus 113 ~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~----~~~g~~~r-~~ii~~~~~yHG~t~~a~s~tg~~~~~ 187 (473)
T 4e3q_A 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLH----AAEGKPQK-RKILTRWNAYHGVTAVSASMTGKPYNS 187 (473)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHH----HHTTCTTC-CEEEEETTCCCCSSHHHHHHSCCGGGG
T ss_pred HHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHH----HhcCCCCc-ceEEEeeceECCCcccccccccccccc
Confidence 3455667888876555678999999999999999998642 23443322 3345566667766555544432
Q ss_pred ---CCCCCEEEEecCC------CCCCC-------HHHHHHHHHHHHhCCC-CcEEEEEeeCCCccccccC----HHHHHH
Q psy1785 334 ---LGSDNVYLIKTDA------RGRML-------PESLRGEIQRTLAEGA-VPFMVSATSGTTVLGAFDP----IPAIAD 392 (629)
Q Consensus 334 ---lg~~~v~~V~~d~------~g~~d-------~~~Le~~i~~~~~~g~-~~~~Vvat~Gtt~~G~idp----l~ei~~ 392 (629)
.....+..++... .+..+ .++|++.|.+ ++. ....|++----...|.+-| ++++++
T Consensus 188 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~ 264 (473)
T 4e3q_A 188 VFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQR---EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILP 264 (473)
T ss_dssp GGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH---HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred ccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHh---hCCCceEEEEeCCccCCCCceeCCHHHHHHHHH
Confidence 2233556665421 22221 2334444433 232 2333443333333455544 899999
Q ss_pred HHHHcCCeEEE--ecCccccccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCC
Q psy1785 393 ICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASAS 469 (629)
Q Consensus 393 i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~ 469 (629)
+|++||+.+++ ...|+.-....+ -...+|+. .|.+++. |.++.- +..|.++++++ ..+..... ..
T Consensus 265 lc~~~gilLI~DEV~tGfGRtG~~f------a~e~~gv~--PDi~t~~--K~l~gG~~Pl~av~~~~~-i~~~~~~~-~~ 332 (473)
T 4e3q_A 265 ILRKYDIPVISDEVICGFGRTGNTW------GCVTYDFT--PDAIISS--KNLTAGFFPMGAVILGPE-LSKRLETA-IE 332 (473)
T ss_dssp HHHHTTCCEEEECTTTSSSTTSSSC------HHHHTTCC--CSEEEEC--GGGGTTSSCCEEEEECHH-HHHHHHHH-HH
T ss_pred HhcccceEEeccCccccCCcccchh------HHHhcCCC--CChHHhc--ccccCCCCCcccccccHH-HHHHhccc-cc
Confidence 99999999999 333321111100 11112342 6888875 766554 56788988874 33221100 00
Q ss_pred ccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcC---CCcEEEccCCCce
Q psy1785 470 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHR---PGFKLVLDEPECT 546 (629)
Q Consensus 470 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---~g~~l~~~~p~~~ 546 (629)
.... ....+ | -.+.+..+.....+|+.+-.+++. ++..++..+|+++|+++ |.+.=+. -.-.
T Consensus 333 ~~~~-------~~hg~--T-~~Gnpla~Aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~v~~vR--G~Gl 397 (473)
T 4e3q_A 333 AIEE-------FPHGF--T-ASGHPVGCAIALKAIDVVMNEGLA---ENVRRLAPRFEERLKHIAERPNIGEYR--GIGF 397 (473)
T ss_dssp HHSC-------CCCCC--T-TTTCHHHHHHHHHHHHHHHHSSHH---HHHHHHHHHHHHHHHHHTTSTTEEEEE--EETT
T ss_pred cccc-------cccCC--C-CCCCcchhhhhhhhhhhhccccHH---HHHHHHHHHHHHHHHHHhcCCCeeEEe--ecce
Confidence 0000 00000 1 123333444445556666566654 44455777887777653 3322111 0111
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 547 NISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 547 ~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
.+.+.+..+......-+.+ ..+..++.+.+.++|.++ . +. + +.+|++.. ...|++|||.+++.+++..
T Consensus 398 ~~gielv~~~~~~~~~~~~-----~~~~~~~~~~~~~~Gll~-~--~~-g--~~i~l~PP-L~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 398 MWALEAVKDKASKTPFDGN-----LSVSERIANTCTDLGLIC-R--PL-G--QSVVLCPP-FILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp EEEEEECSBTTTTBCCCGG-----GCHHHHHHHHHHHTTEEC-E--EE-T--TEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccccc-----HHHHHHHHHHHHHCCcEE-E--ec-C--CEEEEeCC-CCCCHHHHHHHHHHHHHHH
Confidence 2334332221111000000 123456888999999653 2 22 2 57998874 6789999999999887765
Q ss_pred hc
Q psy1785 627 HD 628 (629)
Q Consensus 627 ~~ 628 (629)
++
T Consensus 466 ~~ 467 (473)
T 4e3q_A 466 DK 467 (473)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 234
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=98.58 E-value=2.1e-07 Score=100.54 Aligned_cols=292 Identities=10% Similarity=0.022 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHc
Q psy1785 255 FSLMEEHVLAQMRTIVG--FQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 255 ~~~~E~~~~~~l~~l~G--~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
...+++.+.+++.+.-+ ++..+.++|+|+++++..++.+..... . +.+..|...|++..-+|..+...++..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~-~-----~~~~~~Gd~Vlv~~P~y~~~~~~~~~~ 175 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM-T-----ATPDAPESKVVAHAPFYPVFREQTKYF 175 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCT-T-----TCTTSCCEEEEECSSCCHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhcc-c-----cccCCCCCEEEEeCCCcccHHHHHHHc
Confidence 34555665555554332 345678999999998776655431000 0 000024567888888999999999999
Q ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE--e-cCccc
Q psy1785 333 GLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--T-WNPHK 409 (629)
Q Consensus 333 Glg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV--A-~gg~~ 409 (629)
|. +++. ..+|+++|++++.. .+.+|+.+..++.+|.+-+ + +++ +++..+ + ++.+.
T Consensus 176 g~---~~~~------~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~ 233 (427)
T 2hox_A 176 DK---KGYV------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY 233 (427)
T ss_dssp CB---TTEE------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT
T ss_pred CC---eeee------ecCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC
Confidence 87 5543 24677778776643 2456777788899999887 3 233 444333 2 11110
Q ss_pred cccccccccccccccccccCCcceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 410 LLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 410 l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
.... +..+.+.++.+++|.++.| .-+|.++++++.+........ .+..
T Consensus 234 ------------s~~~--~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~-~~~~---------------- 282 (427)
T 2hox_A 234 ------------TPIK--YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNT---------------- 282 (427)
T ss_dssp ------------SCCC--SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHT----------------
T ss_pred ------------Cccc--cCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHH-HhcC----------------
Confidence 0001 1123789999999998755 237888887655544321110 0000
Q ss_pred CCCCCCcchHHHHHHHHhc---------C-hhhHHHHHHHHHHHHHHHHHHHhcCCCcEE--Ec-c---------CCCce
Q psy1785 489 IQCGRKPDVLKFWFMWKAK---------G-TDGLEAHIDKSFDNAKYFTDKIRHRPGFKL--VL-D---------EPECT 546 (629)
Q Consensus 489 ~~~sr~~~al~~w~~l~~~---------G-~~G~~~~~~~~~~la~~l~~~L~~~~g~~l--~~-~---------~p~~~ 546 (629)
.+........+..+|+.. + .+-+++..++..+..+++.+.|++.+|+++ +. + .|..+
T Consensus 283 -~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g 361 (427)
T 2hox_A 283 -EGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSP 361 (427)
T ss_dssp -SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCC
T ss_pred -CCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCc
Confidence 000011111111222210 1 122344556677788999999999888875 11 0 12223
Q ss_pred EEEE-EeeCCCCCCCCchhhHHHHHhhHHHHHHHHHH-hcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 547 NISF-WYIPPSLRGKEDQADFNELLHKVAPKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 547 ~v~F-~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
.+++ ++. .. . .++.+++. +.|..+..........++||+++++ ++++|+..++.|++
T Consensus 362 ~f~~~~~~-~~------~-----------~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~---~~e~l~~~l~~l~~ 420 (427)
T 2hox_A 362 SYAWVKCE-WE------E-----------DKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK---TQDDFDQLMYYLKD 420 (427)
T ss_dssp SEEEEEEC-SG------G-----------GCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS---CHHHHHHHHHHHHH
T ss_pred eEEEEECC-Cc------H-----------HHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC---CHHHHHHHHHHHHH
Confidence 3332 332 10 0 12344443 6776543322222124689999962 88999999999988
Q ss_pred Hhh
Q psy1785 625 LGH 627 (629)
Q Consensus 625 l~~ 627 (629)
+.+
T Consensus 421 ~~~ 423 (427)
T 2hox_A 421 MVK 423 (427)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 235
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=98.47 E-value=9.8e-06 Score=90.33 Aligned_cols=160 Identities=10% Similarity=0.031 Sum_probs=104.7
Q ss_pred CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCC--CCCCH
Q psy1785 275 GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDAR--GRMLP 352 (629)
Q Consensus 275 ~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~--g~~d~ 352 (629)
.+.++|+|+++++..++.+...+.+ ..|...|++..-+|.....++.+.+.|. +++.|+++++ ..+|+
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l---------~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~ 235 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGL---------LKAGDKVAIGMPVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPD 235 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTS---------SCTTCEEEEEESCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhc---------CCCCCEEEEeCCCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCH
Confidence 5788899999987766654321111 0244456667777888877776655332 7888888754 46999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC---HHHHHHHH--HHcCCeEEE--ecCccccccccccccccccccc
Q psy1785 353 ESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP---IPAIADIC--AEYDMADSV--TWNPHKLLTAPQQCSVFLTRRN 425 (629)
Q Consensus 353 ~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp---l~ei~~i~--~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~ 425 (629)
++|++.+. ..+.+|+.+...+.+|.+-+ +.+|.++| +++++++++ +|+....-.. + ++.
T Consensus 236 ~~l~~~~~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~----s-~~~--- 301 (546)
T 2zy4_A 236 SELDKLKD------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQ----S-LFA--- 301 (546)
T ss_dssp HHHGGGGS------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCC----C-HHH---
T ss_pred HHHHHhhC------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCc----C-HHH---
Confidence 99987652 13556777788899999876 55677788 778999999 6664331101 0 001
Q ss_pred cccCCcceEEEeCCCCCCCCC-CccEEEEEeccchh
Q psy1785 426 YVIEVVADSVTWNPHKLLTAP-QQCSVFLTRHQSVL 460 (629)
Q Consensus 426 ~~i~~gaDsv~~~~HK~l~~P-~~~g~ll~r~~~~l 460 (629)
+..+.+.++.+++|.++.| +-+|.++..+..+.
T Consensus 302 --~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~ 335 (546)
T 2zy4_A 302 --ICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVF 335 (546)
T ss_dssp --HCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHH
T ss_pred --hCCCCEEEEEeCccccCCCCcceEEEEECCHHHH
Confidence 1112578899999999755 33788888764343
No 236
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=98.45 E-value=1.9e-07 Score=103.13 Aligned_cols=286 Identities=18% Similarity=0.167 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCChhHHHHhhcccCCCCCCChhHHHHHHHHHhhcccccCCccccc
Q psy1785 88 PEQVRHERFFRDAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVN 167 (629)
Q Consensus 88 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~V~~~~~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~ 167 (629)
+-.+...+.+..+.+.+. ..... ....-+-+++-.-.++...++.++|++|.+.++++++++++++++++++||+||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 97 (504)
T 2okj_A 20 QTVQFLLEVVDILLNYVR-KTFDR-STKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFN 97 (504)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTCT-TSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEES
T ss_pred HHHHHHHHHHHHHHHHHH-hhccC-CCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEE
Confidence 345556777777777765 33222 2111122223233333334557899999999999999999999999999999999
Q ss_pred ccccccccCCCCHHHHHHhhccCC--CCCC----CCHHHHHHHHHHHhcccccCCCCccccccCCCCChHHHHHHHHHHh
Q psy1785 168 QLFSSKVNEWVNPEELEKKLELGF--NAGP----SSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADA 241 (629)
Q Consensus 168 ~l~s~~v~~~~~~~~l~~~~~~~l--p~~~----~~~~~il~~l~~~~~~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~ 241 (629)
+++++.....+..+.+...++... +... .-++++.+|+.++++.+.. ...+.+.++.+....++-.....
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~----~~~~~~t~ggtea~~~al~~~~~ 173 (504)
T 2okj_A 98 QLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK----DGDGIFSPGGAISNMYSIMAARY 173 (504)
T ss_dssp SSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS----SCEEEEESSHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCC----CCCEEEeCCcHHHHHHHHHHHHH
Confidence 998876655555566666555332 2211 1245666888887754310 22355556666554444222211
Q ss_pred -c-------C-----C-CccccccChhHHHHHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCC
Q psy1785 242 -L-------N-----P-SVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGL 307 (629)
Q Consensus 242 -~-------n-----~-~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~ 307 (629)
. + . ..... .+ +.....+.++++|.........+... +......++++++.+.+.+|.
T Consensus 174 ~~~~~~~~~G~~~~~~~~v~~s--~~-----~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~ 244 (504)
T 2okj_A 174 KYFPEVKTKGMAAVPKLVLFTS--EQ-----SHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGY 244 (504)
T ss_dssp HHCTTHHHHCGGGSCCEEEEEE--TT-----SCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTC
T ss_pred HHhhHHhhcCccccCCeEEEEC--Cc-----chHHHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCC
Confidence 0 1 0 01110 01 11122344555554211233333211 111111222222222333342
Q ss_pred CCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCH
Q psy1785 308 ASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPI 387 (629)
Q Consensus 308 ~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl 387 (629)
.+.+|+++..++ ..|.+| +|+ .|.+.+++...|+||+++++......
T Consensus 245 --~~~~V~~~~~~~------------------------~tG~i~--~l~-~I~~la~~~g~~lhvD~a~~~~~~~~---- 291 (504)
T 2okj_A 245 --VPFYVNATAGTT------------------------VYGAFD--PIQ-EIADICEKYNLWLHVDAAWGGGLLMS---- 291 (504)
T ss_dssp --EEEEEEECBSCS------------------------SSCCBC--CHH-HHHHHHHHHTCEEEEEETTGGGGGGC----
T ss_pred --CceEEEEeCCCC------------------------CCCCcC--CHH-HHHHHHHHcCCEEEEehhhhhHHHhC----
Confidence 245555554443 456554 233 33344444568999999987665432
Q ss_pred HHHHHHHHHcCCeEEEecCccccccccccccccc
Q psy1785 388 PAIADICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 388 ~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
.+......+..-.+++++++|+++..|++|+.++
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~ 325 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL 325 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCcceEEEE
Confidence 1111111211124566899999998888899765
No 237
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=97.81 E-value=2.6e-08 Score=108.85 Aligned_cols=308 Identities=13% Similarity=0.033 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHH---HHcCC
Q psy1785 258 MEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA---AFEGL 334 (629)
Q Consensus 258 ~E~~~~~~l~~l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa---~~lGl 334 (629)
.+.++.+.++++++ ......|+++||++|..|+..||... | ...+|......|-+...+. ...|+
T Consensus 141 ~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~t-------g----r~~ii~~~~~yHG~~~~~~sg~~~~g~ 208 (465)
T 2yky_A 141 NEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAIT-------G----RKTVLAFDGGYHGGLLNFASGHAPTNA 208 (465)
Confidence 44555666777774 23468899999999999999887431 1 1234555666665544333 11222
Q ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHcCCeEEE--ecCcc
Q psy1785 335 GSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP----IPAIADICAEYDMADSV--TWNPH 408 (629)
Q Consensus 335 g~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp----l~ei~~i~~~~~~~lhV--A~gg~ 408 (629)
.. .++.+|. -|+++|+++|++. +..+.+|++.-..+.+|.+-| +++|+++|++||+++++ ++. .
T Consensus 209 ~~-~~~~~~~-----~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~ 278 (465)
T 2yky_A 209 PY-HVVLGVY-----NDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S 278 (465)
Confidence 11 2333332 3788898888742 112334444433344787766 99999999999999999 666 3
Q ss_pred ccccccccccccccccccccCCcceEEEeCCCCCCCCCCccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCcc
Q psy1785 409 KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488 (629)
Q Consensus 409 ~l~~~~~~~~~~l~~~~~~i~~gaDsv~~~~HK~l~~P~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 488 (629)
...... .....++ ..|.++ ..|+++..+..|.++.+++ +..........-+ +..+ +
T Consensus 279 -r~g~~~------a~~~~gv--~pDi~t--~sK~lg~G~piG~v~~~~~-i~~~l~~~~~g~~----------~~~~--T 334 (465)
T 2yky_A 279 -RLSGGG------AQEMLGI--SADLTT--LGKYIGGGMSFGAFGGRRD-LMERFDPARDGAF----------AHAG--T 334 (465)
Confidence 211100 0111122 257665 4699987666888777653 3332110000000 0000 1
Q ss_pred CCCCCCcchHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhcCC-CcEEEcc-CCCceEEEEEeeCCCCCCCCchhhH
Q psy1785 489 IQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRP-GFKLVLD-EPECTNISFWYIPPSLRGKEDQADF 566 (629)
Q Consensus 489 ~~~sr~~~al~~w~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~-g~~l~~~-~p~~~~v~F~~~p~~~~~~~~~~~~ 566 (629)
-++.+........+++.+..+ +..++..++.++|+++|++.. .+.+... ...-..+.|.+.....+... +.
T Consensus 335 -~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~---~~ 407 (465)
T 2yky_A 335 -FNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAG---DV 407 (465)
Confidence 122233333333445544343 355666778888888887652 1222210 12233444443321110000 00
Q ss_pred HHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q psy1785 567 NELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628 (629)
Q Consensus 567 ~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~ 628 (629)
...-.+....+.+.|.++|.++... .. . . + +...|++|||.+++.|+++.++
T Consensus 408 ~~~d~~~~~~~~~~ll~~GV~v~p~-~~---~-~----~-s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 408 RAADQQLKELFFFHMLRKGIYLAPR-GM---Y-A----L-SLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 0000012246778888899654221 11 1 1 3 3568999999999999877554
No 238
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.39 E-value=8.1e-06 Score=95.21 Aligned_cols=326 Identities=11% Similarity=0.017 Sum_probs=162.9
Q ss_pred HHHHHHHHHhCCC-CCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCC-------CCCeEEEEcCCcchHHHHHHHHc
Q psy1785 261 HVLAQMRTIVGFQ-GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLAS-------CPRLVLYTSEDAHYSIKKLAAFE 332 (629)
Q Consensus 261 ~~~~~l~~l~G~~-~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~-------~p~~vv~~s~~~H~Si~kaa~~l 332 (629)
++.++++++++-+ -....|+++||+||..|++.|++++. ...|... ...-+|...+.-|-+..-++.+.
T Consensus 428 ~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~---~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~t 504 (831)
T 4a0g_A 428 KCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC---VDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQ 504 (831)
T ss_dssp HHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHH---HTTTC---------CCEEEEEETTCCCCSSHHHHHTS
T ss_pred HHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHH---hhcCCCccccccccCccEEEEecCCcccCceeeeecc
Confidence 4455677777533 24689999999999999999953221 1223110 12245666777888887777766
Q ss_pred CCCC-------------------------CCEEEEecCCCC---------CCC------------------HHHHHHHHH
Q psy1785 333 GLGS-------------------------DNVYLIKTDARG---------RML------------------PESLRGEIQ 360 (629)
Q Consensus 333 Glg~-------------------------~~v~~V~~d~~g---------~~d------------------~~~Le~~i~ 360 (629)
|... ..+..++..... .-| .+.|++.|+
T Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~ 584 (831)
T 4a0g_A 505 APSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQ 584 (831)
T ss_dssp CCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC-
T ss_pred CccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHH
Confidence 5310 012233332110 011 245666665
Q ss_pred HHH--hCCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHcCCeEEE--ecCccccccccccccccccccccccCCc
Q psy1785 361 RTL--AEGAVPFMVSATSG-TTVLGAFDP----IPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVV 431 (629)
Q Consensus 361 ~~~--~~g~~~~~Vvat~G-tt~~G~idp----l~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~g 431 (629)
+.. ........|++--- ....|.+-| +++|+++|++||+++++ .+.|.......+.| ..+|+ .
T Consensus 585 ~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~------e~~gv-~- 656 (831)
T 4a0g_A 585 EHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTT------ELLGC-K- 656 (831)
T ss_dssp --------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTH------HHHSS-C-
T ss_pred hhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhh------HhcCC-C-
Confidence 321 11222333333221 233455544 89999999999999999 44443222211101 11133 2
Q ss_pred ceEEEeCCCCCCCCC-CccEEEEEeccchhhhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcChh
Q psy1785 432 ADSVTWNPHKLLTAP-QQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTD 510 (629)
Q Consensus 432 aDsv~~~~HK~l~~P-~~~g~ll~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G~~ 510 (629)
.|.++++ |.|+.- ...|.++++++ +.+. +...... .. +..+ .| -++.+..+.....+|+.+-.+
T Consensus 657 PDiitls--K~L~gG~~Plgav~~~~~-i~~~-~~~~~~~----~~-----~~hg-~T-~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 657 PDIACFA--KLLTGGMVPLAVTLATDA-VFDS-FSGDSKL----KA-----LLHG-HS-YSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEECHH-HHHT-TCSSCGG----GS-----CCCC-CT-TTTCHHHHHHHHHHHHHHHCT
T ss_pred CcEEEEe--cccccCccCcEEEEECHH-HHHH-Hhccccc----cc-----ceee-cC-CcccHHHHHHHHHHHHHHHhh
Confidence 5888754 888653 34688888764 3322 1111000 00 0000 01 122233334444455554334
Q ss_pred hHHHHHHHHH-HH----HHHHHHHHhcCCCcEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcC
Q psy1785 511 GLEAHIDKSF-DN----AKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSG 585 (629)
Q Consensus 511 G~~~~~~~~~-~l----a~~l~~~L~~~~g~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G 585 (629)
++.+.+.+.. .+ .+.+.+.+.+.|.+.-+. ..-.++.+.+..+..+. .+ -...+.++.+++.++|
T Consensus 722 ~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~-----~~---~~~~a~~~~~~l~e~G 791 (831)
T 4a0g_A 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV--VIGTLFALELKADASNS-----GY---ASLYAKSLLIMLREDG 791 (831)
T ss_dssp TTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE--EETTEEEEEEC-----------------CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe--ecccEEEEEEecCcccc-----cc---chHHHHHHHHHHHHCC
Confidence 4333221111 11 223445566666654442 22233444443211000 00 0112346788899999
Q ss_pred cEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 586 SMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 586 ~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
.++ . +. .+.||+++. +.+|++|||.+++.|+++.+++
T Consensus 792 v~v-~--p~---g~~lrl~pp-~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 792 IFT-R--PL---GNVIYLMCG-PCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEC-C--CB---TTEEEEECC-TTCCHHHHHHHHHHHHHHHTTT
T ss_pred cEE-E--ec---CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 643 2 22 258999985 8899999999999999877653
No 239
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=98.34 E-value=8.5e-08 Score=105.33 Aligned_cols=242 Identities=16% Similarity=0.142 Sum_probs=130.0
Q ss_pred CCCCCChhHHHHHHHHHh-hcccccCCcccccccccccccCCCCHHHHHHhhccCCCCC------CCCHHHHHHHHHHHh
Q psy1785 137 NAGPSSHGKLIDLMKTVI-QYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAG------PSSHAKLIDLMKTVI 209 (629)
Q Consensus 137 p~~~~~~~~ll~~~~~~l-~y~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~------~~~~~~il~~l~~~~ 209 (629)
|++|.+.+++++++++.+ ++.+++.||+||+++++.+..+....+.+...++...... ..-++++.+|+.+++
T Consensus 47 p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~ 126 (486)
T 1js3_A 47 PQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKML 126 (486)
T ss_dssp CSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHh
Confidence 578999999999999855 8888889999999999987766666777777665332211 123446667777777
Q ss_pred cccccCC---CCccccccCCCCChHHHHHHHHHHh--cC------C---------CccccccChhHHHHHHHHHHHHHHH
Q psy1785 210 QYSVKTG---HPYFVNQLFSSVDPYGLVGQWLADA--LN------P---------SVYTYEVSPVFSLMEEHVLAQMRTI 269 (629)
Q Consensus 210 ~~~~~~~---~p~~~g~~~s~~~~~~~~~~~lt~~--~n------~---------~~~~~~~~p~~~~~E~~~~~~l~~l 269 (629)
+....+. ++...+.+.++.+...+.+-+.... +. . ....+-..+ +.....+.+++
T Consensus 127 g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~-----~h~s~~~~~~~ 201 (486)
T 1js3_A 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ-----AHSSVERAGLI 201 (486)
T ss_dssp TCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT-----CCHHHHHHHHH
T ss_pred CCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCC-----CcHHHHHHHHh
Confidence 5542211 1122355666666555554322211 10 0 000000011 11223345566
Q ss_pred hCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCC
Q psy1785 270 VGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGR 349 (629)
Q Consensus 270 ~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~ 349 (629)
+|+. ....+.. ........++++++.+..++|. .|.+++++..++ ..|.
T Consensus 202 ~G~~---v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~--~p~~vv~~~~~n------------------------~tG~ 250 (486)
T 1js3_A 202 GGVK---LKAIPSD--GKFAMRASALQEALERDKAAGL--IPFFVVATLGTT------------------------SCCS 250 (486)
T ss_dssp HTCE---EEEECCC--TTSCCCHHHHHHHHHHHHHTTC--EEEEEEEEBSCT------------------------TTCC
T ss_pred CCCc---eEEeecC--CCCCCCHHHHHHHHHHHHhCCC--CceEEEEeCCCC------------------------CCCC
Confidence 6663 2333321 1111112222222322233442 244666666553 4555
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEecCccccccccccccccc
Q psy1785 350 MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 350 ~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
+| +|++ |.+.+++...|+||++++|....-. ++.. .+..+..-.+++++++|+++..|++|+.++
T Consensus 251 ~~--~l~~-I~~la~~~~~~lhvD~a~g~~~~~~-~~~~---~~~~g~~~adsi~~~~hK~~~~p~~~G~l~ 315 (486)
T 1js3_A 251 FD--NLLE-VGPICHEEDIWLHVDAAYAGSAFIC-PEFR---HLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (486)
T ss_dssp BC--CHHH-HHHHHHHTTCEEEEECTTGGGGGGS-TTTG---GGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred CC--CHHH-HHHHHHHcCCEEEEehhhHHHHHHC-HHHH---HHhcCccccCeeEEchhhhcCCCcceEEEE
Confidence 54 3433 3444455669999999887654322 1121 111222223566889999998889999764
No 240
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=98.32 E-value=8.5e-07 Score=98.18 Aligned_cols=238 Identities=23% Similarity=0.283 Sum_probs=127.2
Q ss_pred CCCCCChhHHHHHHHHHhhcccccCCcccccccccccccCCCCHHHHHHhhccCC--CCCC----CCHHHHHHHHHHHhc
Q psy1785 137 NAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGF--NAGP----SSHAKLIDLMKTVIQ 210 (629)
Q Consensus 137 p~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~l--p~~~----~~~~~il~~l~~~~~ 210 (629)
|++|.+.++++++++++++++++++||+||++.+++.....+..+.+....+... +... ..++++.+++.++++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g 162 (515)
T 2jis_A 83 RSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVG 162 (515)
T ss_dssp CSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999999876666666666665544321 2111 124556677777774
Q ss_pred ccccCCCCccccccCCCCChHHHHHHHHHHh-c-------CC------CccccccChhHHHHHHHHHHHHHHHhCCCCCC
Q psy1785 211 YSVKTGHPYFVNQLFSSVDPYGLVGQWLADA-L-------NP------SVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGD 276 (629)
Q Consensus 211 ~~~~~~~p~~~g~~~s~~~~~~~~~~~lt~~-~-------n~------~~~~~~~~p~~~~~E~~~~~~l~~l~G~~~~~ 276 (629)
.+ ...+.+.++.+.+.+++-..... . +. ...... + +.....+.++++|.....
T Consensus 163 ~~------~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~--~-----~h~s~~~~~~~~g~g~~~ 229 (515)
T 2jis_A 163 WS------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSK--E-----CHYSIQKGAAFLGLGTDS 229 (515)
T ss_dssp CS------SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--T-----SCTHHHHHHHHTTSCGGG
T ss_pred CC------CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--C-----ccHHHHHHHHHcCCCCCc
Confidence 32 22345556655554444222210 0 10 111111 0 111122445555652212
Q ss_pred eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHH
Q psy1785 277 GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLR 356 (629)
Q Consensus 277 g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le 356 (629)
....+... +......++++++.+.+.+|. .+.+++++..++ ..|.+|+ |+
T Consensus 230 v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~--~~~~Vv~~~~~n------------------------~tG~i~~--l~ 279 (515)
T 2jis_A 230 VRVVKADE--RGKMVPEDLERQIGMAEAEGA--VPFLVSATSGTT------------------------VLGAFDP--LE 279 (515)
T ss_dssp EEEECBCT--TSCBCHHHHHHHHHHHHHTTC--EEEEEEEEBSCT------------------------TTCCBCC--HH
T ss_pred EEEEecCC--CCcCCHHHHHHHHHHHHhCCC--CcEEEEEeCCCC------------------------CCCCccC--HH
Confidence 33333211 111111222222222333342 245566655543 4565542 32
Q ss_pred HHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEecCcccccccccccccccc
Q psy1785 357 GEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLT 422 (629)
Q Consensus 357 ~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l~ 422 (629)
.|.+.+++...|++|+++++...... ++.....++..-.+++++++|+++..|++|+.++.
T Consensus 280 -~I~~la~~~g~~l~vD~a~~~~~~~~----~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~ 340 (515)
T 2jis_A 280 -AIADVCQRHGLWLHVDAAWGGSVLLS----QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLL 340 (515)
T ss_dssp -HHHHHHHHHTCEEEEEETTGGGGGGC----TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred -HHHHHHHHcCCeEEEehhhhhHHHhC----hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEE
Confidence 34444445568999999987655422 22221222222345678999999988888997653
No 241
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=98.24 E-value=1.6e-05 Score=85.20 Aligned_cols=307 Identities=12% Similarity=0.059 Sum_probs=169.6
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCC--CC--CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchH
Q psy1785 249 YEVSPVFSLMEEHVLAQMRTIVGFQ--GG--DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYS 324 (629)
Q Consensus 249 ~~~~p~~~~~E~~~~~~l~~l~G~~--~~--~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~S 324 (629)
|....+...+-+.+.+|+.+.-+.. .. +.++|.|++.+...++.+.... .| ..|++..-+...
T Consensus 68 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~------------~~-d~Vlv~~P~y~~ 134 (405)
T 3k7y_A 68 YLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML------------NV-ETLYVTNPPYIN 134 (405)
T ss_dssp CCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT------------TC-CEEEEESSCCHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc------------CC-CEEEEeCCCCHh
Confidence 4334444455555566664433322 23 2588999998876665543321 25 567777777777
Q ss_pred HHHHHHHcCCCCCCEEEEec-CC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeC-CCccccccC---HHHHHHHHHHcC
Q psy1785 325 IKKLAAFEGLGSDNVYLIKT-DA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSG-TTVLGAFDP---IPAIADICAEYD 398 (629)
Q Consensus 325 i~kaa~~lGlg~~~v~~V~~-d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~G-tt~~G~idp---l~ei~~i~~~~~ 398 (629)
...+++..|. +++.+|. ++ ++.+|+++|++++.+. ....+|+.+.. .|-+|.+-+ +.+|.++|++++
T Consensus 135 ~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~ 207 (405)
T 3k7y_A 135 HVNMIESRGF---NLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKK 207 (405)
T ss_dssp HHHHHHTTTC---EEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC---eEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888899998 9999998 44 4789999999998752 12334555543 588888754 667778899999
Q ss_pred CeEEE--ecCccccccccccccccccccccccCCc-ceEEEeCCCCCCCCC-CccEEEEE--eccchhhhhhcCCCCccc
Q psy1785 399 MADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVV-ADSVTWNPHKLLTAP-QQCSVFLT--RHQSVLTECHSASASYLF 472 (629)
Q Consensus 399 ~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i~~g-aDsv~~~~HK~l~~P-~~~g~ll~--r~~~~l~~~~~~~~~yl~ 472 (629)
+++.. +|.....-....+.. ..+.+ .+.+ -=.++.++-|.++.| .-+|.+.+ .+++........ ...+.
T Consensus 208 ~~vi~De~Y~~l~~~~~~~~~~---~~~~~-~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~-l~~~~ 282 (405)
T 3k7y_A 208 HVIIFDIAYQGFGHTNLEEDVL---LIRKF-EEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNN-LCFIV 282 (405)
T ss_dssp CEEEEEESCTTTSSSSTTGGGH---HHHHH-HTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHH-HHHHH
T ss_pred eEEEEecCcccccCCCcccchH---HHHHH-HhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHH-HHHHH
Confidence 99998 776543210000000 00000 0111 125667899999844 55787753 444333221100 00000
Q ss_pred cCCcCCCcccCCCCccCCCCCCcchHHHHHHHHhcC--------hhhHHHHHHHHHHHHHHHHHHHh----cCC---CcE
Q psy1785 473 QKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG--------TDGLEAHIDKSFDNAKYFTDKIR----HRP---GFK 537 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l~~~G--------~~G~~~~~~~~~~la~~l~~~L~----~~~---g~~ 537 (629)
+.. ..+. ..+..+++...+. .+-++++.++..+..+++.+.|+ +.. +|+
T Consensus 283 ~~~-------------~~~~---~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~ 346 (405)
T 3k7y_A 283 RKF-------------YSSP---VIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWN 346 (405)
T ss_dssp HTT-------------TSSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGG
T ss_pred hcc-------------cCCC---cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCc
Confidence 000 0011 1222222222221 12234445556777888999998 652 155
Q ss_pred EEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHH
Q psy1785 538 LVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDY 617 (629)
Q Consensus 538 l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~ 617 (629)
+. +|.-+.++|--.|. +..++|.+.|..+ . + + . |++++ ..++++|++
T Consensus 347 ~~--~p~gg~f~~~~l~~--------------------~~~~~L~~~gV~v-~--p--~--~--Ris~a--~~~~~~i~~ 393 (405)
T 3k7y_A 347 VY--KKQRGLFSFVPLLA--------------------KIAEHLKTHHIYI-I--N--N--G--RINVS--GITKNNVDY 393 (405)
T ss_dssp GG--SSCCSSEEECGGGG--------------------GGTTTTTTTTEEC-C--T--T--S--EEEGG--GCCTTHHHH
T ss_pred cc--cCCceEEEecCCCH--------------------HHHHHHHHCCEee-c--C--C--C--eEEEe--ccCHHHHHH
Confidence 33 45555544421110 1123454566432 2 1 2 1 99984 667889999
Q ss_pred HHHHHHHHhhcC
Q psy1785 618 FIDEIERLGHDL 629 (629)
Q Consensus 618 l~~~i~~l~~~l 629 (629)
+++.|+++.+.+
T Consensus 394 ~~~~i~~~~~~~ 405 (405)
T 3k7y_A 394 IADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 999999887643
No 242
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=98.09 E-value=2.1e-06 Score=94.56 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCCCChhHHHHHHHH-HhhcccccCCcccccccccccccCCCCHHHHHHhhccCCCCCC------CCHHHHHHHHHHHh
Q psy1785 137 NAGPSSHGKLIDLMKT-VIQYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGP------SSHAKLIDLMKTVI 209 (629)
Q Consensus 137 p~~~~~~~~ll~~~~~-~l~y~v~t~hP~F~~~l~s~~v~~~~~~~~l~~~~~~~lp~~~------~~~~~il~~l~~~~ 209 (629)
|++|.+.+++++++.+ ++++.++++||+||++..+++..+.+..+.+...++......+ .-++++.+|+.+++
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~ 153 (497)
T 2qma_A 74 DNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKY 153 (497)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHh
Confidence 6789999999999985 6799999999999999999888777777766665553221111 23445566777776
Q ss_pred cccccCCCCccccccCCCCChHHHHH
Q psy1785 210 QYSVKTGHPYFVNQLFSSVDPYGLVG 235 (629)
Q Consensus 210 ~~~~~~~~p~~~g~~~s~~~~~~~~~ 235 (629)
+.+ +...+.+.++.+.....+
T Consensus 154 g~~-----~~~~~~~t~ggt~a~~~a 174 (497)
T 2qma_A 154 DLS-----EKADGIFTSGGTQSNQMG 174 (497)
T ss_dssp TCC-----TTCEEEEESSHHHHHHHH
T ss_pred CCC-----CCCCeEEcCCchHHHHHH
Confidence 432 113355555555444333
No 243
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=97.65 E-value=0.0025 Score=68.43 Aligned_cols=283 Identities=10% Similarity=0.043 Sum_probs=152.7
Q ss_pred eEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCC-EEEEec--CCCCCCCHH
Q psy1785 277 GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDN-VYLIKT--DARGRMLPE 353 (629)
Q Consensus 277 g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~-v~~V~~--d~~g~~d~~ 353 (629)
..-|.|||.+...++........ .|...|+++.-+-.+.....+..|. . |...+. +++..+|.+
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~----------~pgd~V~ip~P~w~~y~~i~~~aG~---~~V~~~~~~~~~~~~~d~~ 178 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFD----------AETTPIYLSDPTWPNHYGVVKAAGW---KNICTYAYYDPKTVSLNFE 178 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSC----------TTTSCEEEEESCCTHHHHHHHHTTC---CCEEEEECEEGGGTEECHH
T ss_pred eeeecCchHHHHHHHHHHHHhcC----------CCCCEEEEecCCchhHHHHHHHcCC---eEEEeeccccccccCCCHH
Confidence 45578999887666654433211 2444466666655566667777886 4 444443 234678999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHcCCeEEE--ecCcccccccccccccccccccccc
Q psy1785 354 SLRGEIQRTLAEGAVPFMVSATSGTTVLGAF---DPIPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVI 428 (629)
Q Consensus 354 ~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i---dpl~ei~~i~~~~~~~lhV--A~gg~~l~~~~~~~~~~l~~~~~~i 428 (629)
.+.+.+... .....+++.+...+.+|.. +.+++|.++|+++++++.. +|.+...-....+. + ..+.. .
T Consensus 179 ~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~--~-~~~~~-~ 251 (420)
T 4h51_A 179 GMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDA--Y-AARLF-A 251 (420)
T ss_dssp HHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHT--H-HHHHH-H
T ss_pred HHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccch--H-HHHhH-H
Confidence 888887653 3345566667778888887 4577888899999999888 77764421110000 0 00000 0
Q ss_pred CCc-ceEEEeCCCCCCCCCCc-cEEEEEeccchh--hhhhcCCCCccccCCcCCCcccCCCCccCCCCCCcchHHHHHHH
Q psy1785 429 EVV-ADSVTWNPHKLLTAPQQ-CSVFLTRHQSVL--TECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMW 504 (629)
Q Consensus 429 ~~g-aDsv~~~~HK~l~~P~~-~g~ll~r~~~~l--~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~w~~l 504 (629)
+.+ -=.++-++-|.++.+-- +|.+.+.....- ....+. -..+.+.. ..+. .+.......
T Consensus 252 ~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~-l~~~~r~~-------------~s~~---p~~~a~~~~ 314 (420)
T 4h51_A 252 RRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSV-MDSLIREE-------------YTCP---PAHGARLAH 314 (420)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHH-HHHHHHTT-------------TSSC---CHHHHHHHH
T ss_pred hhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHH-HHHhhhcc-------------cCcc---hHHHHHHHH
Confidence 110 12456688898776532 787776543111 111000 00010000 0011 112222222
Q ss_pred HhcC--------hhhHHHHHHHHHHHHHHHHHHHhcCC--C-cEEEccCCCceEEEEEeeCCCCCCCCchhhHHHHHhhH
Q psy1785 505 KAKG--------TDGLEAHIDKSFDNAKYFTDKIRHRP--G-FKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKV 573 (629)
Q Consensus 505 ~~~G--------~~G~~~~~~~~~~la~~l~~~L~~~~--g-~~l~~~~p~~~~v~F~~~p~~~~~~~~~~~~~~~l~~~ 573 (629)
..+. .+-++.+.++..++.+.|.+.|++.. + |..+. +.-+.++|. + +.
T Consensus 315 ~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~--~q~GmF~~~--g--ls--------------- 373 (420)
T 4h51_A 315 LILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVI--NQIGMFSFL--G--LS--------------- 373 (420)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH--HCCSSEEEC--C--CC---------------
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeec--CCCceEEec--C--cC---------------
Confidence 2221 23345566667778888888888752 1 22222 333445542 1 11
Q ss_pred HHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHhhcC
Q psy1785 574 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629 (629)
Q Consensus 574 ~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~~~l 629 (629)
++..++|.+.|..++ .+ -|++++ ..+++.|++++++|.++.+++
T Consensus 374 -~e~v~~L~e~~Vy~~-----~~----gRis~A--gl~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 374 -KAQCEYCQNHNIFIT-----VS----GRANMA--GLTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp -HHHHHHHHHTTEECC-----TT----CEEEGG--GCCHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHhCCEEEc-----CC----CEEEec--cCCHHHHHHHHHHHHHHHHHh
Confidence 122456667774322 12 299985 578999999999999887653
No 244
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=96.19 E-value=0.0046 Score=66.58 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHH-Hc--CCeEEEecCccccccccccccccc
Q psy1785 354 SLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICA-EY--DMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 354 ~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~-~~--~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
+|++ |.+.+++...|+||+.++|.... .+.++.+ .. +.++.++++.|+++..|.+|++++
T Consensus 216 dl~~-Ia~ia~~~gi~l~VD~A~G~~~~-------~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~ 278 (450)
T 3bc8_A 216 RLEE-LAVICANYDIPHVVNNAYGLQSS-------KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 278 (450)
T ss_dssp CHHH-HHHHHHHHTCCEEEECTTTTTCH-------HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEE
T ss_pred CHHH-HHHHHHHCCCeEEEECCCchhhh-------hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEE
Confidence 4433 33445556699999999987653 2333332 12 567888899999999999999865
No 245
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=95.89 E-value=0.0038 Score=67.29 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=31.9
Q ss_pred ChhHHHHhhcccCCCCCCChhHHHHHHHHHh--hcccccCCccccc
Q psy1785 124 NPEELEKKLELGFNAGPSSHGKLIDLMKTVI--QYSVKTGHPYFVN 167 (629)
Q Consensus 124 ~p~el~~~l~~~lp~~~~~~~~ll~~~~~~l--~y~v~t~hP~F~~ 167 (629)
+.++++.+++.++|++|.+.+++++.+.+.+ ++.+++.||+|+.
T Consensus 6 ~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~ 51 (452)
T 2dgk_A 6 AKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ 51 (452)
T ss_dssp ---------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC
T ss_pred chHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC
Confidence 4567788899999999999999999999876 6777889999996
No 246
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=94.83 E-value=0.038 Score=60.48 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=32.2
Q ss_pred CChhHHHHhhcc-cCCCCCCChhHHHHHHHHHhhcccccCCccccc
Q psy1785 123 VNPEELEKKLEL-GFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVN 167 (629)
Q Consensus 123 ~~p~el~~~l~~-~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~ 167 (629)
..+.-+++.++- .+|++|.+.+++++.+++.+. ..+||+|+.
T Consensus 18 ~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~---l~gnp~~~l 60 (502)
T 3hbx_A 18 FASRYVRTSLPRFKMPENSIPKEAAYQIINDELM---LDGNPRLNL 60 (502)
T ss_dssp TTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGG---GSCCGGGBT
T ss_pred ccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhc---cCCCCCcee
Confidence 345566676655 899999999999999998763 457899763
No 247
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=79.37 E-value=5.6 Score=42.97 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=33.3
Q ss_pred cccCCCCCCChhHHHHHHHHHh-hcccccCCccccccccc
Q psy1785 133 ELGFNAGPSSHGKLIDLMKTVI-QYSVKTGHPYFVNQLFS 171 (629)
Q Consensus 133 ~~~lp~~~~~~~~ll~~~~~~l-~y~v~t~hP~F~~~l~s 171 (629)
...+|++|.+.+++++.+++.+ ++.+++.+|+|++++..
T Consensus 68 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~ 107 (514)
T 3mad_A 68 HARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYH 107 (514)
T ss_dssp CSSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecC
Confidence 3568899999999999999775 77888899999998765
No 248
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=69.33 E-value=73 Score=33.42 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=38.7
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEecCccccccccccccccc
Q psy1785 346 ARGRM-LPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFL 421 (629)
Q Consensus 346 ~~g~~-d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA~gg~~l~~~~~~~~~~l 421 (629)
..|.+ |+++|.+ .+++...|++|+.+++.-..|.. +........ + .+.+++++++++..|..|+.++
T Consensus 243 ~tG~i~~l~~I~~----la~~~g~~v~vD~A~~~~~~g~~---~~~~~~~~~-~-~D~~~~s~hK~~~~p~g~G~l~ 310 (456)
T 2z67_A 243 PPRNSDDIVEIAK----ICENYDIPHIINGAYAIQNNYYL---EKLKKAFKY-R-VDAVVSSSDKNLLTPIGGGLVY 310 (456)
T ss_dssp TTBCCCCHHHHHH----HHHHHTCCEEEECTTTTTCHHHH---HHHHHHHTS-C-CSEEEEEHHHHHCCCSSCEEEE
T ss_pred CCCCcCCHHHHHH----HHHHcCCcEEEECcchHHHHHhh---HHHHHhhCC-C-CCEEEEcCCCCcCCCCCeEEEE
Confidence 45665 3444433 33334589999999887766542 111222222 3 3345778889877777777654
No 249
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=66.13 E-value=41 Score=32.13 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHH
Q psy1785 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAI 390 (629)
Q Consensus 311 p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei 390 (629)
.+..++.....-+.+...+.++|+ ++..... -+.+++++.|.+.+++|.. +..|+ .-.
T Consensus 107 ~kIavVg~~~~~~~~~~i~~ll~~---~i~~~~~-----~~~ee~~~~i~~l~~~G~~-----vVVG~---------~~~ 164 (225)
T 2pju_A 107 SSIGVVTYQETIPALVAFQKTFNL---RLDQRSY-----ITEEDARGQINELKANGTE-----AVVGA---------GLI 164 (225)
T ss_dssp SCEEEEEESSCCHHHHHHHHHHTC---CEEEEEE-----SSHHHHHHHHHHHHHTTCC-----EEEES---------HHH
T ss_pred CcEEEEeCchhhhHHHHHHHHhCC---ceEEEEe-----CCHHHHHHHHHHHHHCCCC-----EEECC---------HHH
Confidence 467778888888888889999999 8887774 3578999999999998833 22222 233
Q ss_pred HHHHHHcCCeEEE
Q psy1785 391 ADICAEYDMADSV 403 (629)
Q Consensus 391 ~~i~~~~~~~lhV 403 (629)
.++|+++|+.-..
T Consensus 165 ~~~A~~~Gl~~vl 177 (225)
T 2pju_A 165 TDLAEEAGMTGIF 177 (225)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHHcCCcEEE
Confidence 6889999988655
No 250
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=64.45 E-value=74 Score=31.84 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=31.6
Q ss_pred cCCCCCCChhHHHHHHHHHhhcccccCCccccccccc
Q psy1785 135 GFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQLFS 171 (629)
Q Consensus 135 ~lp~~~~~~~~ll~~~~~~l~y~v~t~hP~F~~~l~s 171 (629)
.+|+.+.+.+++++.+++......++.+|+|++....
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCS 40 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCC
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecC
Confidence 5789999999999999998887788888888887654
No 251
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=62.47 E-value=40 Score=31.33 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHH
Q psy1785 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAI 390 (629)
Q Consensus 311 p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei 390 (629)
.+..++.....-+.+...+.++|+ ++.....+ +.+++++.+.+.+++|.. +..|+ .-.
T Consensus 95 ~kIavvg~~~~~~~~~~~~~ll~~---~i~~~~~~-----~~~e~~~~i~~l~~~G~~-----vvVG~---------~~~ 152 (196)
T 2q5c_A 95 NELALIAYKHSIVDKHEIEAMLGV---KIKEFLFS-----SEDEITTLISKVKTENIK-----IVVSG---------KTV 152 (196)
T ss_dssp SEEEEEEESSCSSCHHHHHHHHTC---EEEEEEEC-----SGGGHHHHHHHHHHTTCC-----EEEEC---------HHH
T ss_pred CcEEEEeCcchhhHHHHHHHHhCC---ceEEEEeC-----CHHHHHHHHHHHHHCCCe-----EEECC---------HHH
Confidence 466777777777788889999999 88877754 456778999999998833 22232 223
Q ss_pred HHHHHHcCCeEEE
Q psy1785 391 ADICAEYDMADSV 403 (629)
Q Consensus 391 ~~i~~~~~~~lhV 403 (629)
.++|+++|+.-..
T Consensus 153 ~~~A~~~Gl~~vl 165 (196)
T 2q5c_A 153 TDEAIKQGLYGET 165 (196)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHcCCcEEE
Confidence 6788999987554
No 252
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=49.89 E-value=12 Score=37.73 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=49.3
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 341 LIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 341 ~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
.-|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 85 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS 85 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 346678999999999999999999887777777777877777777666677766554 345555333
No 253
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=48.50 E-value=14 Score=37.01 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=40.5
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+.
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 68 (294)
T 3b4u_A 14 PFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAA 68 (294)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 5578899999999999999999886656666666666666655555666665554
No 254
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=47.75 E-value=13 Score=37.40 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=45.3
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEec
Q psy1785 342 IKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTW 405 (629)
Q Consensus 342 V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~ 405 (629)
-|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+..
T Consensus 25 TPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv 91 (304)
T 3l21_A 25 TPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA 91 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 35678999999999999999999886666666666666666666555666655543 34555533
No 255
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=47.70 E-value=13 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=42.6
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.+++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 18 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 18 PMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5578899999999999999888886656666666666666666555566655443 245544
No 256
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=46.60 E-value=14 Score=36.81 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.5
Q ss_pred ecCCCCCCCHHHHHHHHHHHHh-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecCc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLA-EGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWNP 407 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~-~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~gg 407 (629)
|.+++|++|.+.|++.++...+ .|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|.
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 14 SFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 5578899999999999999998 886666666666666666666555666655543 3455553333
No 257
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=46.19 E-value=15 Score=36.86 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=43.9
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 22 PF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg 88 (303)
T 2wkj_A 22 PFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG 88 (303)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 5578899999999999999999886656666666666666655555555655543 355555333
No 258
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=46.15 E-value=14 Score=37.37 Aligned_cols=62 Identities=15% Similarity=-0.014 Sum_probs=46.4
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc--CCeEEEe
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY--DMADSVT 404 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~--~~~lhVA 404 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+.
T Consensus 19 Pf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaG 82 (313)
T 3dz1_A 19 PFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVG 82 (313)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEe
Confidence 5578999999999999999999887667777777777777766666666666554 3455443
No 259
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=46.02 E-value=15 Score=37.02 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=44.3
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecCc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWNP 407 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~gg 407 (629)
|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+..|.
T Consensus 27 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 94 (304)
T 3cpr_A 27 PFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGT 94 (304)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCC
Confidence 5578899999999999999998886656666666666666655555555655543 3555553333
No 260
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=45.63 E-value=15 Score=36.80 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=39.4
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~ 64 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV 64 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999886555555555555555555555555655554
No 261
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=45.57 E-value=13 Score=37.52 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=45.0
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 35 Pf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 98 (315)
T 3na8_A 35 PFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIV 98 (315)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5578999999999999999999886666776777777777766666666665543 345544
No 262
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=45.44 E-value=15 Score=36.90 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=42.1
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 23 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg 89 (301)
T 1xky_A 23 PFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG 89 (301)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC
Confidence 5577899999999999999888886555555555555555555555555554443 355555333
No 263
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.34 E-value=13 Score=37.12 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=42.9
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.+++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (291)
T 3tak_A 12 PMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIA 75 (291)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 5678899999999999999888886656666666666666666555666655443 245544
No 264
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=44.81 E-value=14 Score=37.20 Aligned_cols=56 Identities=9% Similarity=-0.017 Sum_probs=43.0
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 342 IKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 342 V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
-|.+++|++|.+.|++.++...+.|-.-++|.+|.|...+-+.+.-.++.+.+.+.
T Consensus 24 TPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 79 (307)
T 3s5o_A 24 TPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQA 79 (307)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 35678899999999999999888886666777777777777766666677766664
No 265
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=44.65 E-value=12 Score=37.21 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~ 64 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDV 64 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 5578899999999999999999886555555555555555555444555555443
No 266
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=44.59 E-value=14 Score=37.43 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=43.3
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 33 Pf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 96 (315)
T 3si9_A 33 PFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVA 96 (315)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5578899999999999999999886666666666666666666555666655543 345544
No 267
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=44.59 E-value=14 Score=37.00 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=42.6
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg 78 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG 78 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 5578899999999999999888886655565555555555555555555555443 345555333
No 268
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=44.56 E-value=14 Score=37.43 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=44.5
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.+++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 34 Pf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 97 (314)
T 3qze_A 34 PFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIA 97 (314)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5678999999999999999888886666776777777777766666666655443 245555
No 269
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=43.14 E-value=18 Score=36.99 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=45.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 340 YLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 340 ~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
..-|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 39 lvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg 108 (343)
T 2v9d_A 39 VSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG 108 (343)
T ss_dssp ECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred eECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 3346678899999999999999888886666666666666666665555565655443 345555333
No 270
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=42.62 E-value=14 Score=37.34 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.7
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 18 Pf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpVia 81 (311)
T 3h5d_A 18 PFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIA 81 (311)
T ss_dssp CBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5578899999999999998888886666776666666666666666666666554 245544
No 271
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=41.62 E-value=17 Score=37.02 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=42.9
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 45 PF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg 111 (332)
T 2r8w_A 45 PADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG 111 (332)
T ss_dssp CBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 5578899999999999999888886655665565666665655555555555443 355555333
No 272
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=41.10 E-value=33 Score=35.09 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=42.5
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEEe
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVT 404 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhVA 404 (629)
|.+++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+-.-.+.+.+.
T Consensus 37 PF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaG 98 (344)
T 2hmc_A 37 PCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVG 98 (344)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEe
Confidence 55788999999999999999888866666666666666666555445555422224555553
No 273
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=41.04 E-value=20 Score=36.95 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=42.4
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 342 IKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 342 V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
-|.+++|++|.+.|++.++...+.|-.-++|.++.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 69 TPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 133 (360)
T 4dpp_A 69 TPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133 (360)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35678999999999999999888886666666666666666655555555544442 245544
No 274
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=39.98 E-value=97 Score=23.13 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=39.3
Q ss_pred CeEEEEcCCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHH
Q psy1785 312 RLVLYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPA 389 (629)
Q Consensus 312 ~~vv~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~e 389 (629)
.+++|++..+.++ +.....-.|+ .+..++++.+ . .+.+.+.+....+..|.+++ ++...|-. .+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i---~~~~~~i~~~----~-~~~~~~~~~~~~~~vP~l~~---~g~~i~g~---~~ 67 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGV---SFQELPIDGN----A-AKREEMIKRSGRTTVPQIFI---DAQHIGGY---DD 67 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTC---CCEEEECTTC----S-HHHHHHHHHHSSCCSCEEEE---TTEEEESH---HH
T ss_pred cEEEEECCCChhHHHHHHHHHHCCC---CcEEEECCCC----H-HHHHHHHHHhCCCCcCEEEE---CCEEEeCH---HH
Confidence 4677887777776 3344555687 7888888753 1 23334444344456776542 34444443 45
Q ss_pred HHHHHH
Q psy1785 390 IADICA 395 (629)
Q Consensus 390 i~~i~~ 395 (629)
|.++.+
T Consensus 68 i~~~~~ 73 (82)
T 1fov_A 68 LYALDA 73 (82)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 275
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=39.57 E-value=25 Score=37.34 Aligned_cols=40 Identities=3% Similarity=0.004 Sum_probs=33.8
Q ss_pred cccCCCCCCChhHHHHHHHHHhh--cccccCCcccccccccc
Q psy1785 133 ELGFNAGPSSHGKLIDLMKTVIQ--YSVKTGHPYFVNQLFSS 172 (629)
Q Consensus 133 ~~~lp~~~~~~~~ll~~~~~~l~--y~v~t~hP~F~~~l~s~ 172 (629)
..++|++|.+.+++++.++++.. -.+++.||+|++.++..
T Consensus 35 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~ 76 (497)
T 3mc6_A 35 FPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76 (497)
T ss_dssp CSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC
T ss_pred ccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCC
Confidence 45799999999999999998876 47788999999987664
No 276
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=39.48 E-value=20 Score=35.70 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=42.7
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+++| +|.+.+++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg 78 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG 78 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred CcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 557789 999999999999888886656666666666666655555555655443 355555333
No 277
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=39.12 E-value=1.3e+02 Score=24.70 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCeEEEEcCCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHH
Q psy1785 311 PRLVLYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIP 388 (629)
Q Consensus 311 p~~vv~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ 388 (629)
++.++|+...+.+| ......-+|+ ....+.+|.. -|...+++.+.+.......|...+ ++...|-.|++.
T Consensus 17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i---~~~~~dvd~~--~~~~~~~~~l~~~~g~~tvP~vfi---~g~~igG~d~l~ 88 (114)
T 3h8q_A 17 SRVVIFSKSYCPHSTRVKELFSSLGV---ECNVLELDQV--DDGARVQEVLSEITNQKTVPNIFV---NKVHVGGCDQTF 88 (114)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHTTC---CCEEEETTTS--TTHHHHHHHHHHHHSCCSSCEEEE---TTEEEESHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCC---CcEEEEecCC--CChHHHHHHHHHHhCCCccCEEEE---CCEEEeCHHHHH
Confidence 46888998888887 3345566677 7777877642 245566666755544445665433 566777777666
Q ss_pred HHH
Q psy1785 389 AIA 391 (629)
Q Consensus 389 ei~ 391 (629)
++.
T Consensus 89 ~l~ 91 (114)
T 3h8q_A 89 QAY 91 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 278
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=37.80 E-value=14 Score=37.05 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=40.7
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~ 396 (629)
|.+++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+
T Consensus 15 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~ 68 (300)
T 3eb2_A 15 PVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIE 68 (300)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHH
Confidence 567899999999999999999988666666666666666666655566665554
No 279
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=35.02 E-value=17 Score=36.76 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=44.9
Q ss_pred ecC-CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTD-ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d-~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+ ++|.+|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 21 Pf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 85 (318)
T 3qfe_A 21 FFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMA 85 (318)
T ss_dssp CEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 456 7899999999999999988886667777777777777766666666665553 345555
No 280
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=33.59 E-value=18 Score=36.54 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=37.6
Q ss_pred ecCC-CCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~-~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.++ +|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 22 Pf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpVia 86 (316)
T 3e96_A 22 PFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVA 86 (316)
T ss_dssp CBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 4567 788888888888888777775545555555555555555444555544443 245444
No 281
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=33.46 E-value=1.8e+02 Score=27.99 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=56.2
Q ss_pred HhCCCCCCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH---HcCCCCCCEEEEecC
Q psy1785 269 IVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA---FEGLGSDNVYLIKTD 345 (629)
Q Consensus 269 l~G~~~~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~---~lGlg~~~v~~V~~d 345 (629)
+|.+. +-..+..||+-++-.++.....+ +| --|+++... .....++++ -.|. ++..+++|
T Consensus 4 ~f~L~-gKvalVTGas~GIG~aia~~la~-------~G-----a~Vvi~~~~-~~~~~~~~~~l~~~g~---~~~~~~~D 66 (255)
T 4g81_D 4 LFDLT-GKTALVTGSARGLGFAYAEGLAA-------AG-----ARVILNDIR-ATLLAESVDTLTRKGY---DAHGVAFD 66 (255)
T ss_dssp TTCCT-TCEEEETTCSSHHHHHHHHHHHH-------TT-----CEEEECCSC-HHHHHHHHHHHHHTTC---CEEECCCC
T ss_pred CcCCC-CCEEEEeCCCcHHHHHHHHHHHH-------CC-----CEEEEEECC-HHHHHHHHHHHHhcCC---cEEEEEee
Confidence 34444 45677788888777666554443 34 224444433 223333332 2243 77777776
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccccc
Q psy1785 346 ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFD 385 (629)
Q Consensus 346 ~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id 385 (629)
--|.+++++.+++..++....=.++-++|....+.+.
T Consensus 67 ---v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~ 103 (255)
T 4g81_D 67 ---VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMV 103 (255)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCCCCEEEECCCCCCCCCGG
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCChh
Confidence 3567888888888877654444555666766666554
No 282
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=32.72 E-value=20 Score=36.18 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=42.5
Q ss_pred Eec-CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecCc
Q psy1785 342 IKT-DARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWNP 407 (629)
Q Consensus 342 V~~-d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~gg 407 (629)
-|. +++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|.
T Consensus 21 TPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 21 VPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp CCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 356 78899999999999999888885555555555555555555555555554442 3455553333
No 283
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=31.81 E-value=2e+02 Score=28.10 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=55.4
Q ss_pred CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHH
Q psy1785 275 GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPES 354 (629)
Q Consensus 275 ~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~ 354 (629)
+-..+..|++-++-.++.....+ +| --|+++.... -...++++-+|- ++..+++| --|.++
T Consensus 29 gKvalVTGas~GIG~aiA~~la~-------~G-----a~V~i~~r~~-~~l~~~~~~~g~---~~~~~~~D---v~~~~~ 89 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVA-------EG-----ARVFITGRRK-DVLDAAIAEIGG---GAVGIQAD---SANLAE 89 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHH-------TT-----CEEEEEESCH-HHHHHHHHHHCT---TCEEEECC---TTCHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHH-------CC-----CEEEEEECCH-HHHHHHHHHcCC---CeEEEEec---CCCHHH
Confidence 45677778888777666554443 34 2345555432 345555555664 77788876 347778
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeCCCccccccC
Q psy1785 355 LRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP 386 (629)
Q Consensus 355 Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idp 386 (629)
+++.+++..++....=.++-++|....+.+.+
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~ 121 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGE 121 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCCCCCCTTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhh
Confidence 88888777655333334555666666555543
No 284
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=31.05 E-value=1.6e+02 Score=22.62 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=44.0
Q ss_pred CCeEEEEcCCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHH---HHHHHHHHHhCCCCcEEEEEeeCCCcccccc
Q psy1785 311 PRLVLYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPES---LRGEIQRTLAEGAVPFMVSATSGTTVLGAFD 385 (629)
Q Consensus 311 p~~vv~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~---Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~id 385 (629)
+.+++|+...++++ +.....-+|+ ....++++. .+.++ +.+.+.+.......|.+++ +....|-+|
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi---~~~~~~v~~---~~~~~~~~~~~~l~~~~g~~~vP~l~~---~g~~i~G~~ 82 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGV---DFEVIWIDK---LEGEERKKVIEKVHSISGSYSVPVVVK---GDKHVLGYN 82 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTC---CCEEEEGGG---CCHHHHHHHHHHHHHHHSSSCSCEEEE---TTEEEESCC
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCC---CcEEEEeee---CCccchHHHHHHHHHhcCCCCcCEEEE---CCEEEeCCC
Confidence 46788988888887 3345666787 777787753 22222 2233333333456787665 445555554
Q ss_pred CHHHHHHHHH
Q psy1785 386 PIPAIADICA 395 (629)
Q Consensus 386 pl~ei~~i~~ 395 (629)
-++|.++..
T Consensus 83 -~~~l~~~l~ 91 (92)
T 3ic4_A 83 -EEKLKELIR 91 (92)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHhc
Confidence 477776543
No 285
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=30.73 E-value=22 Score=35.31 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=35.6
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~ 396 (629)
|.+ +|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+
T Consensus 12 Pf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~ 64 (289)
T 2yxg_A 12 PFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVD 64 (289)
T ss_dssp CEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 456 88999999999998888887655555555555555555544555555444
No 286
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=30.66 E-value=21 Score=35.42 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.9
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~ 397 (629)
|.+ +|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+.
T Consensus 10 Pf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 63 (286)
T 2r91_A 10 TFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSA 63 (286)
T ss_dssp CEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 456 899999999999999888886555565555556666655555555555543
No 287
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=29.07 E-value=23 Score=35.26 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=39.9
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+ +|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 12 Pf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 77 (294)
T 2ehh_A 12 PFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG 77 (294)
T ss_dssp CEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC
T ss_pred CcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 456 889999999999998888875555555555555555555445555554442 245544333
No 288
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.82 E-value=25 Score=35.24 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=43.1
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhVA~g 406 (629)
|.+ +|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 24 Pf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg 89 (306)
T 1o5k_A 24 PFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG 89 (306)
T ss_dssp CEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred CcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC
Confidence 456 899999999999999888886656666666666666665555666655443 345555333
No 289
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=27.33 E-value=19 Score=35.65 Aligned_cols=60 Identities=17% Similarity=0.018 Sum_probs=37.2
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHcCCeEEE
Q psy1785 342 IKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV 403 (629)
Q Consensus 342 V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~~~~lhV 403 (629)
-|.+++|++|.+.+++.++...+. -.-+++.+|.|...+-+.+.-.++.+.+.+ .+.+.+
T Consensus 8 TPf~~dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~-rvpvia 67 (283)
T 2pcq_A 8 TPFDREGRLDEEAFRELAQALEPL-VDGLLVYGSNGEGVHLTPEERARGLRALRP-RKPFLV 67 (283)
T ss_dssp CCBCTTCCBCHHHHHHHHHHHGGG-SSCCEETCTTTTGGGSCHHHHHHHHHTCCC-SSCCEE
T ss_pred CCCCCCCCcCHHHHHHHHHHHHhh-CCEEEECCcCcCchhcCHHHHHHHHHHHHh-CCcEEE
Confidence 456789999999999999987775 444455455555555554433444444444 455544
No 290
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.05 E-value=2.2e+02 Score=22.11 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCeEEEEcCCcchHH-----HHH---HHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh--CCCCcEEEEEeeCCCc
Q psy1785 311 PRLVLYTSEDAHYSI-----KKL---AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLA--EGAVPFMVSATSGTTV 380 (629)
Q Consensus 311 p~~vv~~s~~~H~Si-----~ka---a~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~--~g~~~~~Vvat~Gtt~ 380 (629)
+++++|++...+++- .++ ..-.|+ ....+.++.+ + ++.+.+.+... ....|..+ .+...
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i---~~~~~di~~~----~-~~~~~l~~~~g~~~~~vP~if---i~g~~ 70 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRI---QYQLVDISQD----N-ALRDEMRTLAGNPKATPPQIV---NGNHY 70 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTC---CCEEEETTSC----H-HHHHHHHHHTTCTTCCSCEEE---ETTEE
T ss_pred CCEEEEEcCCCCCchhhHHHHHHHHHHHHCCC---ceEEEECCCC----H-HHHHHHHHHhCCCCCCCCEEE---ECCEE
Confidence 467899999898882 333 334566 7788887643 3 34445544332 12456433 25566
Q ss_pred cccccCHHHH
Q psy1785 381 LGAFDPIPAI 390 (629)
Q Consensus 381 ~G~idpl~ei 390 (629)
.|-.|++.++
T Consensus 71 igG~d~l~~l 80 (93)
T 1t1v_A 71 CGDYELFVEA 80 (93)
T ss_dssp EEEHHHHHHH
T ss_pred EeCHHHHHHH
Confidence 6776666554
No 291
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=24.82 E-value=2.5e+02 Score=22.36 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCeEEEEc-----CCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCcccc
Q psy1785 311 PRLVLYTS-----EDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGA 383 (629)
Q Consensus 311 p~~vv~~s-----~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~ 383 (629)
.+.++|+. ..+++| +.+...-.++ .+..+.++.+ + .+.+.+.........|.++ .++...|-
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i---~~~~vdi~~~----~-~~~~~l~~~~g~~~vP~v~---i~g~~igg 85 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGV---EYETFDILED----E-EVRQGLKAYSNWPTYPQLY---VKGELVGG 85 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTC---CCEEEEGGGC----H-HHHHHHHHHHTCCSSCEEE---ETTEEEEC
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCC---CeEEEECCCC----H-HHHHHHHHHHCCCCCCeEE---ECCEEEeC
Confidence 35777877 566666 3445556677 7888887653 2 3444554444334466543 25566676
Q ss_pred ccCHHHH
Q psy1785 384 FDPIPAI 390 (629)
Q Consensus 384 idpl~ei 390 (629)
+|++.++
T Consensus 86 ~d~~~~l 92 (105)
T 2yan_A 86 LDIVKEL 92 (105)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6665554
No 292
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=24.20 E-value=28 Score=34.77 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc----CCeEEEecC
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY----DMADSVTWN 406 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~----~~~lhVA~g 406 (629)
|. ++|++|.+.|++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+..|
T Consensus 19 Pf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg 85 (301)
T 3m5v_A 19 PF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG 85 (301)
T ss_dssp CE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC
T ss_pred Cc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC
Confidence 45 6889999999999999888886656665666666666655555555555443 355555333
No 293
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=24.09 E-value=2.7e+02 Score=22.11 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCCeEEEEcCCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEeeCCCccccccC
Q psy1785 310 CPRLVLYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTL-AEGAVPFMVSATSGTTVLGAFDP 386 (629)
Q Consensus 310 ~p~~vv~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~-~~g~~~~~Vvat~Gtt~~G~idp 386 (629)
...++||+.....+| ..+...-.|+ ....+.++.+ + .+.+.+.+.. .....|.++ .+....|-+|+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i---~y~~idI~~~----~-~~~~~l~~~~~g~~~vP~if---i~g~~igG~d~ 83 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGV---EFQEYCIDGD----N-EAREAMAARANGKRSLPQIF---IDDQHIGGCDD 83 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTC---CCEEEECTTC----H-HHHHHHHHHTTTCCCSCEEE---ETTEEEESHHH
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC---CCEEEEcCCC----H-HHHHHHHHHhCCCCCCCEEE---ECCEEEeChHH
Confidence 356788998888887 3355666788 7888887653 2 3344444432 334466443 24556666665
Q ss_pred HHHH
Q psy1785 387 IPAI 390 (629)
Q Consensus 387 l~ei 390 (629)
+.++
T Consensus 84 l~~~ 87 (99)
T 3qmx_A 84 IYAL 87 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 294
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=23.80 E-value=32 Score=34.33 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q psy1785 346 ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396 (629)
Q Consensus 346 ~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~ 396 (629)
++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+
T Consensus 14 ~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~ 64 (297)
T 2rfg_A 14 INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAE 64 (297)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHH
Confidence 578888888888888888877555555555555555555544455555443
No 295
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=22.90 E-value=3.8e+02 Score=25.41 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=48.5
Q ss_pred CeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHHHcCCCCCCEEEEecCCCCCCCHHHH
Q psy1785 276 DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESL 355 (629)
Q Consensus 276 ~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~~lGlg~~~v~~V~~d~~g~~d~~~L 355 (629)
.-++..||+..+-.++...+.+ +| -.|+++... .....+.+..++- ++..+.+|- -|.+.+
T Consensus 28 k~vlVTGas~gIG~aia~~la~-------~G-----~~V~~~~r~-~~~~~~~~~~~~~---~~~~~~~Dv---~d~~~v 88 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFHA-------QG-----AIVGLHGTR-EDKLKEIAADLGK---DVFVFSANL---SDRKSI 88 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH-------TT-----CEEEEEESC-HHHHHHHHHHHCS---SEEEEECCT---TSHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-------CC-----CEEEEEeCC-HHHHHHHHHHhCC---ceEEEEeec---CCHHHH
Confidence 4577778887766655544332 34 224444332 2334444455554 788888763 467777
Q ss_pred HHHHHHHHhCCCCcEEEEEeeCCCcccccc
Q psy1785 356 RGEIQRTLAEGAVPFMVSATSGTTVLGAFD 385 (629)
Q Consensus 356 e~~i~~~~~~g~~~~~Vvat~Gtt~~G~id 385 (629)
++.+++..++....=.|+-++|.+..+.+.
T Consensus 89 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~ 118 (266)
T 3grp_A 89 KQLAEVAEREMEGIDILVNNAGITRDGLFV 118 (266)
T ss_dssp HHHHHHHHHHHTSCCEEEECCCCC-----C
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 777776655432333555666665544443
No 296
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=22.66 E-value=2.7e+02 Score=21.61 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHhcCcEEEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHH
Q psy1785 570 LHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624 (629)
Q Consensus 570 l~~~~~~i~~~l~~~G~~~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~ 624 (629)
..+-++...+.|..+|.+-.+....-+++.++|++.+-.+.++...+.-+.-++.
T Consensus 28 vektapvwvkemksrgllkfsmnrvwnkgevfrvvmtyeykdrasfeaniayled 82 (110)
T 2od6_A 28 VEKTAPVWVKEMKSRGLLKFSMNRVWNKGEVFRVVMTYEYKDRASFEANIAYLED 82 (110)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEEEECSSSSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHhhhccchhhhhhhhccCCcEEEEEEEEEeccchhhhhhhHHHHh
Confidence 3455677788999999775554333334468999998778888877766655543
No 297
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=22.57 E-value=5.1e+02 Score=24.95 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred CCeEEeCCchhhHHHHHHHHHHhhchhHHhcCCCCCCCeEEEEcCCcchHHHHHHH-HcCCCCCCEEEEecCCCCCCCHH
Q psy1785 275 GDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAA-FEGLGSDNVYLIKTDARGRMLPE 353 (629)
Q Consensus 275 ~~g~~~~GgT~an~~al~~ar~~~~~~~~~~G~~~~p~~vv~~s~~~H~Si~kaa~-~lGlg~~~v~~V~~d~~g~~d~~ 353 (629)
+..++..||+..+-.++...+.+ +| --|++++...- ...+... +...|..++..+.+|- -|.+
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~-------~G-----~~V~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~Dv---~d~~ 104 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFAR-------AG-----ANVAVAARSPR-ELSSVTAELGELGAGNVIGVRLDV---SDPG 104 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHH-------TT-----CEEEEEESSGG-GGHHHHHHHTTSSSSCEEEEECCT---TCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-------CC-----CEEEEEECCHH-HHHHHHHHHHhhCCCcEEEEEEeC---CCHH
Confidence 34677888887766665544332 34 23455544432 2333333 3333434788888763 4677
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeCCCccccc
Q psy1785 354 SLRGEIQRTLAEGAVPFMVSATSGTTVLGAF 384 (629)
Q Consensus 354 ~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i 384 (629)
.+++.+++..++....=.++-++|....+.+
T Consensus 105 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 135 (293)
T 3rih_A 105 SCADAARTVVDAFGALDVVCANAGIFPEARL 135 (293)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 7777777665543233345556665554444
No 298
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.85 E-value=41 Score=33.40 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHHc---CCeEEE
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---DMADSV 403 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~~---~~~lhV 403 (629)
|.+++ ++|.+.+++.++...+.|-.-+++.++.|...+-+.+.-.++.+.+.+. .+.+.+
T Consensus 14 Pf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 76 (292)
T 3daq_A 14 PFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIA 76 (292)
T ss_dssp CEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 44567 8888888888888888876666666666666666666555666655443 244544
No 299
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=21.47 E-value=30 Score=34.40 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.8
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q psy1785 343 KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396 (629)
Q Consensus 343 ~~d~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~idpl~ei~~i~~~ 396 (629)
|. ++|++|.+.|++.++...+.|-.-+++.+|.|...+-+.+.-.++.+.+.+
T Consensus 12 Pf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~ 64 (292)
T 2vc6_A 12 PF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIK 64 (292)
T ss_dssp CE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred Cc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 44 678999999999999888887555555555555555555555555555444
No 300
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=21.43 E-value=3.8e+02 Score=25.35 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=51.0
Q ss_pred EEEcCCcchH--HHHHHHHcCCCCCCEEEEecC--------CCCCCCHHHHHHHHHHHHhCCCCcEEEEEeeCCCccccc
Q psy1785 315 LYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTD--------ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAF 384 (629)
Q Consensus 315 v~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d--------~~g~~d~~~Le~~i~~~~~~g~~~~~Vvat~Gtt~~G~i 384 (629)
++.++++-+. +.+.++..+. ++..+++. ..+.|++++..++++.. .+..++.++-++..-.-
T Consensus 163 i~~~GDt~~~~~~~~~~~~~~~---Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l-----~~~~vi~~H~~~~~~~~ 234 (264)
T 3rpc_A 163 VYLVGDTVWTSDVEKALLRFDP---NVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRK-----PEAKIIAVHMDTVNHTA 234 (264)
T ss_dssp EEECCSCCSCHHHHHHHHHHCC---SEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHC-----TTSEEEEESCSSSTTBC
T ss_pred EEEECCcCchHHHHHHHHHhCC---CEEEEecCccccccccCCcccCHHHHHHHHHhC-----CcCeEEEEccccccccc
Confidence 4445554332 4444555566 88888886 46789999777777553 24467777766644444
Q ss_pred cCHHHHHHHHHHcCC
Q psy1785 385 DPIPAIADICAEYDM 399 (629)
Q Consensus 385 dpl~ei~~i~~~~~~ 399 (629)
.+.+++.+.+++.++
T Consensus 235 ~~~~~l~~~~~~~g~ 249 (264)
T 3rpc_A 235 TSRKDVRKFIKGNNI 249 (264)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 677899999888776
No 301
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=21.39 E-value=95 Score=23.98 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCcE-EEeeeecCCccceEEEeecCCCCCHHHHHHHHHHHHHHh
Q psy1785 575 PKIKERMMKSGSM-MITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 626 (629)
Q Consensus 575 ~~i~~~l~~~G~~-~i~~~~~~~~~~~lR~~~~n~~~t~edid~l~~~i~~l~ 626 (629)
..+.++|...|.- .+. .+ ..+.|+.+. |+.++++.+.+.+.|++.+
T Consensus 24 ~~l~~~L~~~G~~a~i~----~~-~~~yRV~vG-pf~s~~~A~~~~~~L~~~g 70 (81)
T 1uta_A 24 ETVRAQLAFEGFDSKIT----TN-NGWNRVVIG-PVKGKENADSTLNRLKMAG 70 (81)
T ss_dssp HHHHHHHHHHTCCEEEE----EC-SSSEEEEES-SCBTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEE----eC-CcEEEEEEC-CcCCHHHHHHHHHHHHHcC
Confidence 4667778777842 222 22 247899996 9999999999999998854
No 302
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=21.22 E-value=2.7e+02 Score=21.08 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=37.3
Q ss_pred CCeEEEEcCCcchH--HHHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEeeCCCccccccCH
Q psy1785 311 PRLVLYTSEDAHYS--IKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTL-AEGAVPFMVSATSGTTVLGAFDPI 387 (629)
Q Consensus 311 p~~vv~~s~~~H~S--i~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~-~~g~~~~~Vvat~Gtt~~G~idpl 387 (629)
+.+++|++..+.++ +.....-.|+ .+..+.++ ++..+.+.+.. .....|.+++ ++...|-.+++
T Consensus 6 ~~v~~y~~~~C~~C~~~~~~L~~~~i---~~~~vdv~-------~~~~~~l~~~~~~~~~vP~l~~---~g~~i~g~~~i 72 (89)
T 2klx_A 6 KEIILYTRPNCPYCKRARDLLDKKGV---KYTDIDAS-------TSLRQEMVQRANGRNTFPQIFI---GDYHVGGCDDL 72 (89)
T ss_dssp CCEEEESCSCCTTTHHHHHHHHHHTC---CEEEECSC-------HHHHHHHHHHHHSSCCSCEEEE---TTEECCSHHHH
T ss_pred ceEEEEECCCChhHHHHHHHHHHcCC---CcEEEECC-------HHHHHHHHHHhCCCCCcCEEEE---CCEEEeChHHH
Confidence 56778887777776 3345555677 77777664 34444554444 4456776543 44444544443
No 303
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=20.87 E-value=2e+02 Score=22.92 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCeEEEEcCCcchHH--HHHHHHcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHH---hCCCCcEEEEEeeCCCcccccc
Q psy1785 311 PRLVLYTSEDAHYSI--KKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTL---AEGAVPFMVSATSGTTVLGAFD 385 (629)
Q Consensus 311 p~~vv~~s~~~H~Si--~kaa~~lGlg~~~v~~V~~d~~g~~d~~~Le~~i~~~~---~~g~~~~~Vvat~Gtt~~G~id 385 (629)
+.+++|+...+.+|. .....-+|+ ....+.++.. +.++..+..+... .....|.+++ -|....|-+|
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~~i---~y~~vdI~~~---~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~~igg~~ 93 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDLGV---DFDYVYVDRL---EGKEEEEAVEEVRRFNPSVSFPTTII--NDEKAIVGFK 93 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHTB---CEEEEEGGGC---CHHHHHHHHHHHHHHCTTCCSCEEEE--TTTEEEESCC
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcCC---CcEEEEeecc---CcccHHHHHHHHHHhCCCCccCEEEE--CCCEEEEcCC
Confidence 467888888888873 345666787 7788877642 3333333333322 2345776554 2325666665
Q ss_pred CHHHHHHH
Q psy1785 386 PIPAIADI 393 (629)
Q Consensus 386 pl~ei~~i 393 (629)
+ ++|.++
T Consensus 94 ~-~~l~~~ 100 (103)
T 3nzn_A 94 E-KEIRES 100 (103)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHH
Confidence 4 555443
Done!