RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1785
(629 letters)
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 293 bits (752), Expect = 3e-94
Identities = 118/418 (28%), Positives = 174/418 (41%), Gaps = 85/418 (20%)
Query: 220 FVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF--QGGDG 277
F+ +++DP L+ + L A N +T++ SP + ME V+ + + G + DG
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADG 60
Query: 278 IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337
+F GGS +N A+ AR A ++K G +LV+ S+ AH S++K AA+
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY---LDV 117
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
V L+ D GRM PE+L I AEG P MV AT+GTT GA DP+ IAD+ +Y
Sbjct: 118 KVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKY 177
Query: 398 DM---ADSVTWNPHKLLTAPQQCS-----VFLTRRNYV--IEVVADSVTWNPHKLLTAPQ 447
D+ D+ F R+ IE V DS++ +PHK P
Sbjct: 178 DLWLHVDA--------------AYGGFLLPFPEPRHLDFGIERV-DSISVDPHKYGLVPL 222
Query: 448 QCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK 507
CS L R LK W +
Sbjct: 223 GCSAVLVR-----------------------------------------ALKLWATLRRF 241
Query: 508 GTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFN 567
G DG HID+ D AKY + IR PGF+L+ EP + + F P
Sbjct: 242 GRDGYGEHIDRIVDLAKYLAELIRADPGFELL-GEPNLSLVCFRLKPSV----------- 289
Query: 568 ELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625
L ++ + +R+ + G + + PN R V+ N D D +++IER
Sbjct: 290 -KLDELNYDLSDRLNERGGWHVPATTLGG-PNVLRFVVTNPLTTRDDADALLEDIERA 345
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 286 bits (735), Expect = 3e-91
Identities = 117/386 (30%), Positives = 174/386 (45%), Gaps = 25/386 (6%)
Query: 180 PEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGH-PYFVNQLFSSVDPYGLVGQWL 238
P L L P ++ ++ I V T H P F + L+G L
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 239 ADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVG-------FQGGDGIFCPGGSMANGYAI 291
+DA+N + +T+E SP + +E V+ + ++G G G+ G S +N A+
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 292 SCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRML 351
AR ++K G S +LV YTS+ AH SI+K A G+ + I TD G+M
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVE---LREIPTDENGKMR 177
Query: 352 PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLL 411
L I+ G +PF V AT GTT GAFDP+ + DIC +YD W H +
Sbjct: 178 GMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYD-----LW-LH--V 229
Query: 412 TAPQQCSVFLTR--RNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS 467
A S F+ R+++ IE ADS ++NPHK + CS R + L + +
Sbjct: 230 DAAYAGSAFICPEFRHWLFGIE-RADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFN 288
Query: 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFT 527
YL DK D D GD I R+ +LK WF+ ++ G +GL+ I + + AKYF
Sbjct: 289 PEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFE 348
Query: 528 DKIRHRPGFKLVLDEPECTNISFWYI 553
+R F++ E + F
Sbjct: 349 ALVRKDSRFEICA-ERGLGLVCFRLK 373
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 145 bits (369), Expect = 7e-38
Identities = 87/369 (23%), Positives = 141/369 (38%), Gaps = 44/369 (11%)
Query: 215 TGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF-Q 273
GHP F + + L ALN ++ + SP + +EE V+ + ++G +
Sbjct: 59 DGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPE 118
Query: 274 GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333
G F GG+ AN A+ AR + + + + SE AH+S +K A + G
Sbjct: 119 EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLG 178
Query: 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADI 393
LG V + TD R+ ++L I G V T+GTT G+ D I +ADI
Sbjct: 179 LGLRRVPTVPTD--YRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSIDDIEELADI 232
Query: 394 CAEYDM---ADSVTWNPHKLLTAPQQCS-----VFLTRRNYVIEVV--ADSVTWNPHKLL 443
EY + D+ FL + DS+T + HK
Sbjct: 233 AEEYGIWLHVDA--------------AFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYG 278
Query: 444 TAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP--DVLKFW 501
AP C V L R + L + YL + I R P L +
Sbjct: 279 LAPIGCGVVLFRDEEALRRILIFADYYL--------PGGGIPNFTILGSR-PGRQALALY 329
Query: 502 FMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKE 561
+ G +G +D++ + A+Y +++ F+LV +EPE ++F
Sbjct: 330 ANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELV-NEPELPIVAFRL-KDDEDTLA 387
Query: 562 DQADFNELL 570
D ++ +
Sbjct: 388 DLSERLDRR 396
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 143 bits (362), Expect = 2e-36
Identities = 131/473 (27%), Positives = 209/473 (44%), Gaps = 69/473 (14%)
Query: 195 PSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLAD---ALNPSVYTYEV 251
S H + L+ ++ +SV T P F+ + S++ PY ++ L+ ALN ++ E
Sbjct: 69 VSEHTQ--FLLDKLVAHSVHTASPSFIGHMTSAL-PYFMLP--LSKLMVALNQNLVKIET 123
Query: 252 SPVFSLMEEHVLAQMRTIVGFQGGD-------------GIFCPGGSMANGYAISCARHHA 298
S F+ +E VL M +V Q D G FC GG++AN A+ AR+
Sbjct: 124 SKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRL 183
Query: 299 FPQ------IKTQGLAS------CPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDA 346
+ +GL + L + SE HYS+ K A G+G DN+ IKTDA
Sbjct: 184 LKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA 243
Query: 347 RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV--T 404
R+ ++LR + + P + +GTT G DP+ +ADI E V
Sbjct: 244 NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAA 303
Query: 405 WNPHKLLTAPQQCSVFLTRRNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLT- 461
W LL+ T R+ + IE ADSVT + HK L P + L + ++++
Sbjct: 304 WGGATLLSN--------TYRHLLKGIE-RADSVTIDAHKQLYVPMGAGMVLFKDPALMSA 354
Query: 462 -ECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSF 520
E H A Y+ +K D G ++ R + + G G E ID+S
Sbjct: 355 IEHH---AEYILRKG-----SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSI 406
Query: 521 DNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRG------KEDQADFNELLHKVA 574
+ AKYF D I+ +P F+LV EPE +++ Y+P ++ +E + NELL ++
Sbjct: 407 EKAKYFADLIQQQPDFELV-TEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLT 465
Query: 575 PKIKERMMKSGSMMITYQPIHALPNF------FRLVLQNSALDHSDMDYFIDE 621
I++R ++G ++ + FR+VL N H + +DE
Sbjct: 466 KFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 109 bits (274), Expect = 3e-25
Identities = 97/356 (27%), Positives = 153/356 (42%), Gaps = 20/356 (5%)
Query: 195 PSSHAKLID-LMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSP 253
P S +L+D + K ++ P + SS G +G+ L L+ +T+ SP
Sbjct: 107 PESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSP 166
Query: 254 VFSLMEEHVLAQMRTIVGFQ-------GGDGIFCPGGSMANGYAISCARHHAFPQIKTQG 306
+ +E VL + ++ G G+ G A + AR ++ G
Sbjct: 167 AATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---G 223
Query: 307 LASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGR--MLPESLRGEIQRTLA 364
P+LV+Y S+ H S +K G+ +N+ L+KTD+ M PESL I LA
Sbjct: 224 KTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLA 283
Query: 365 EGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLTRR 424
+G +PF + AT GTT A DP+ + +I +Y + W A C + R
Sbjct: 284 KGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI-----WLHVDAAYAGNAC-ICPEYR 337
Query: 425 NYVIEVV-ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483
++ + ADS N HK L A Q CS + + L + + YL K DT +
Sbjct: 338 KFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN 397
Query: 484 SGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV 539
D I R+ LK W + + G++ L I + AK+F D + P F++V
Sbjct: 398 YKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVV 453
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 102 bits (256), Expect = 5e-23
Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 26/351 (7%)
Query: 232 GLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF--------QGGDGIFCPGG 283
G +G+ L+ LN +++ SP + +E VL + ++ GG G+
Sbjct: 97 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGG-GVIQGTA 155
Query: 284 SMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIK 343
S A + AR ++ G + +LV+Y S+ H +++K G+ +N L+K
Sbjct: 156 SEAVLVVLLAARDRV---LRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLK 212
Query: 344 TDARGR--MLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMAD 401
TD+ + PE L I L+ G +PF + AT GTT A DP+ + I M
Sbjct: 213 TDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM-- 270
Query: 402 SVTWNPHKLLTAPQQCSVFLTRRNYVIEV-VADSVTWNPHKLLTAPQQCSVFLTRHQSVL 460
W A C + R+Y+ V ADS N HK CS+ + ++ L
Sbjct: 271 ---WFHVDAAYAGSAC-ICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNAL 326
Query: 461 TECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSF 520
+ S + +L K ++ D D I GR+ LK W + + G + L+++I
Sbjct: 327 IQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHI 386
Query: 521 DNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLH 571
AK F + F++V + + F +PP K ++ + N+L H
Sbjct: 387 KLAKEFEQLVAQDSRFEVV-TPRIFSLVCFRLVPP----KNNEDNGNKLNH 432
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 61.4 bits (150), Expect = 4e-10
Identities = 67/306 (21%), Positives = 118/306 (38%), Gaps = 69/306 (22%)
Query: 256 SLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVL 315
+ +EE + + ++ G GG+ AN A+ AR+ A K + P +V+
Sbjct: 58 AKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLA----KAEK----PNIVV 109
Query: 316 YTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEI-QRTLAEGAVPFMVSA 374
E AH+S K A G+ + D R+ +++ I T+ +
Sbjct: 110 --PESAHFSFDKAADMLGV---ELRRAPLDDDYRVDVKAVEDLIDDNTIG-------IVG 157
Query: 375 TSGTTVLGAFDPIPAIADICAEYD----------------MADSVTWNPHKLLTAPQQCS 418
+GTT LG DPIP ++ I E + D +
Sbjct: 158 IAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF------------- 204
Query: 419 VFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFY 478
++ + V DS+T +PHK+ AP L R +S L + + YL K +
Sbjct: 205 ------DFSLPGV-DSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKKQAT 256
Query: 479 DTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKL 538
T SG V + + K G +G +++ +N ++ ++++ R GF+
Sbjct: 257 LTGTRSG---------AGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEP 306
Query: 539 VLDEPE 544
V+ EP
Sbjct: 307 VI-EPV 311
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 58.9 bits (143), Expect = 3e-09
Identities = 68/303 (22%), Positives = 109/303 (35%), Gaps = 68/303 (22%)
Query: 282 GGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYL 341
GG+ N Y AR FP LY S+D HYS+ K+A + S +
Sbjct: 92 GGTEGNLYGCYLARE-LFPDG-----------TLYYSKDTHYSVSKIARLLRIKSR---V 136
Query: 342 IKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY---- 397
I + G + + L I + P ++ A GTT+ GA D I I +I +
Sbjct: 137 ITSLPNGEIDYDDL---ISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDD 193
Query: 398 -----DMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVF 452
D A S P + P + DS+ + HK + +P C +
Sbjct: 194 YYIHADAALSGMILP--FVNNPPP---------FSFADGIDSIAISGHKFIGSPMPCGIV 242
Query: 453 LTRHQSVLTECHSASASYLFQKDKFY-DTKY-DSGDKHIQCGRKP-DVLKFWFMWKAKGT 509
L + + V ++ D Y S D+ I R L W ++ G+
Sbjct: 243 LAKKKYV---------------ERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGS 287
Query: 510 DGLEAHIDKSFDNAKYFTDKIRHR--PGFK------LVLDEPECTNISFWYIPPSLRGKE 561
GL + D A+Y D+++ P ++ +V P W++ S
Sbjct: 288 KGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPSERIWKKWHLATS----G 343
Query: 562 DQA 564
+QA
Sbjct: 344 NQA 346
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 53.7 bits (129), Expect = 1e-07
Identities = 60/244 (24%), Positives = 86/244 (35%), Gaps = 64/244 (26%)
Query: 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEI-----QRTLAE 365
P +LY S ++HYS+ K A + + V P GEI +R LA+
Sbjct: 110 PDGILYASRESHYSVFKAARMYRMEAVKV------------PTLPSGEIDYDDLERALAK 157
Query: 366 GA-VPFMVSATSGTTVLGAFDPIPAIADICAEYD-----------------MADSVTWNP 407
P +++ GTTV GA D + I I E M V+ P
Sbjct: 158 NRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAP 217
Query: 408 HKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSAS 467
P SV+ + HK L P C V LTR + V S +
Sbjct: 218 EVTFRKP-----------------IGSVSVSGHKFLGCPMPCGVALTRKKHVKAL--SQN 258
Query: 468 ASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFT 527
YL +D T S + H L W+ + KG G++ + NA Y
Sbjct: 259 VEYLNSRDA---TIMGSRNGHAP-------LYLWYTLRRKGYRGIKRDVQHCMRNAHYLK 308
Query: 528 DKIR 531
D++
Sbjct: 309 DRLT 312
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 48.1 bits (115), Expect = 7e-06
Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 44/301 (14%)
Query: 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLY 316
+EE V+ + ++ G GG+ AN A+ A++ A + K P +++
Sbjct: 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLA-REEKRT-----PNIIV- 111
Query: 317 TSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEI-QRTLAEGAVPFMVSAT 375
E AH+S +K A GL + D + + + I T+ +
Sbjct: 112 -PESAHFSFEKAAEMLGL---ELRYAPLDEDYTVDVKDVEDLIDDNTIG-------IVGI 160
Query: 376 SGTTVLGAFDPIPAIADICAEYDMADSVTWN------PHKLLTAPQQCSVFLTRRNYVIE 429
+GTT LG D I ++ I E + V P L F V
Sbjct: 161 AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPF-LKKGYNPPP-FDFSLPGV-- 216
Query: 430 VVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHI 489
S+T +PHK+ +P L R +S L + S A YL K + T SG
Sbjct: 217 ---QSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVKKQATITGTRSG---- 268
Query: 490 QCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNIS 549
+ + K G +G + + +N +Y ++++ + GF+ V+ EP ++
Sbjct: 269 -----ASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELK-KIGFEPVI-EPVLNIVA 321
Query: 550 F 550
F
Sbjct: 322 F 322
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 47.7 bits (114), Expect = 1e-05
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 23/131 (17%)
Query: 276 DGIFCPGGSMANGYAIS--CARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEG 333
+F P G+ AN A++ C + V+ E AH + A E
Sbjct: 52 AALFVPSGTQANQLALAAHCQPGES---------------VIC-HETAHIYTDECGAPEF 95
Query: 334 LGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAV-PFMVS---ATSGTTVLGAFDPIPA 389
G I A G++ PE + I+ A P V AT G TV D + A
Sbjct: 96 FGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVY-PLDELEA 154
Query: 390 IADICAEYDMA 400
I+ +C E+ +
Sbjct: 155 ISAVCKEHGLP 165
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 45.2 bits (107), Expect = 8e-05
Identities = 62/243 (25%), Positives = 95/243 (39%), Gaps = 41/243 (16%)
Query: 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPF 370
P +LY S ++HYS+ K A + V T G + + + LA P
Sbjct: 177 PDGILYASRESHYSVFKAARMYRMECVKV---DTLVSGEIDCADFK---AKLLANKDKPA 230
Query: 371 MVSATSGTTVLGAFDPIPAIADICAE--------YDMADSVTWNPHKLLTAPQQCSVFLT 422
+++ GTTV GA D + + E Y D + L P F+
Sbjct: 231 IINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFG----LMMP-----FVK 281
Query: 423 RRNYV-IEVVADSVTWNPHKLLTAPQQCSVFLTR--HQSVLTECHSASASYLFQKDKFYD 479
R V + SV+ + HK + P C V +TR H +VL S++ YL +D
Sbjct: 282 RAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL----SSNVEYLASRDA--- 334
Query: 480 TKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLV 539
T S + H + W+ KG G + + K NA Y D++R G +
Sbjct: 335 TIMGSRNGHAP-------IFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE-AGISAM 386
Query: 540 LDE 542
L+E
Sbjct: 387 LNE 389
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 42.0 bits (99), Expect = 2e-04
Identities = 37/192 (19%), Positives = 55/192 (28%), Gaps = 42/192 (21%)
Query: 272 FQGGD--GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLA 329
Q G+ +F P G+ AN A+ L P + + H S
Sbjct: 13 LQPGNDKAVFVPSGTGANEAAL-------------LALLG-PGDEVIVDANGHGSR--YW 56
Query: 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPA 389
L + D G L I L ++ T TT G P+
Sbjct: 57 VAAELAGAKPVPVPVDDAGYGG---LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKE 113
Query: 390 IADICAEYD---MADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVV---ADSVTWNPHKLL 443
I I EY + D+ S + + AD VT++ HK L
Sbjct: 114 IRKIAKEYGILLLVDAA--------------SAGGASPAPGVLIPEGGADVVTFSLHKNL 159
Query: 444 TAPQQCSVFLTR 455
V + +
Sbjct: 160 GGE-GGGVVIVK 170
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 39.1 bits (91), Expect = 0.007
Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 34/158 (21%)
Query: 322 HYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL 381
HYS K A G+G D V + D+ RM L I++ AE V G+T
Sbjct: 232 HYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEE 291
Query: 382 GAFDPIPAIADICAEYDMADSVTWNPH------------------------KLLTAPQQC 417
GA D I I + + M + + + H L +
Sbjct: 292 GAVDGIDKIVALRNKL-MKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350
Query: 418 SVFLTRRNYVIEVV---------ADSVTWNPHKLLTAP 446
VF ++ Y+ V A+SVT +PHK+ P
Sbjct: 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIP 388
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 37.3 bits (87), Expect = 0.020
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 21/122 (17%)
Query: 277 GIFCPGGSMANGYAIS--CARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGL 334
+F P G+ AN A++ + + E AH + A E L
Sbjct: 50 ALFVPSGTAANQLALAAHTQPGGS----------------VICHETAHIYTDEAGAPEFL 93
Query: 335 GSDNVYLIKTDARGRMLPESLRGEI-QRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADI 393
+ + G++ PE L I R P +VS + TT G P+ + I
Sbjct: 94 SGVKLLPVPG-ENGKLTPEDLEAAIRPRDDIHFPPPSLVSLEN-TTEGGTVYPLDELKAI 151
Query: 394 CA 395
A
Sbjct: 152 SA 153
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 36.8 bits (86), Expect = 0.027
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 31/158 (19%)
Query: 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAIS--CARHHAFPQIKTQG 306
Y P + +E+ V + G + +F P G+MAN A+ C R
Sbjct: 28 YGGDPTVNRLEDRV----AELFGKEAA--LFVPSGTMANQLALMAHCRRGDE-------- 73
Query: 307 LASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEG 366
+ E AH + LG + G++ E L I+
Sbjct: 74 --------VICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIH 125
Query: 367 AVPF-MVSAT-----SGTTVLGAFDPIPAIADICAEYD 398
P ++S +G V+ + + + I I E+
Sbjct: 126 FPPTGLISLENTHNSAGGQVV-SLEELREIRAIAREHG 162
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 36.8 bits (86), Expect = 0.027
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 264 AQMRTIVGFQGGDGIFCPGGSMANGYAISCARH-HAFPQIKTQGLASCPRLVLYTSEDAH 322
Q+ ++G + IF G + +N AI A + Q + TS H
Sbjct: 51 EQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKH---------IITSAIEH 101
Query: 323 YSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQ-RTLAEGAVPFMVSATSGTTVL 381
++ + V + D+ G + E L ++ T+ +VS
Sbjct: 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-------LVSIMHANNET 154
Query: 382 GAFDPIPAIADICAEYD 398
G PI I +IC E
Sbjct: 155 GTIQPIAEIGEICKERG 171
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 34.5 bits (80), Expect = 0.14
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 28/135 (20%)
Query: 278 IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI---KKLAAFEGL 334
IF G + A +K +L T + H ++ ++LA G
Sbjct: 65 IFTSGTTEAINLVAISLGRS----LKPG------DEILVTEMEHHANLVPWQELAKRTGA 114
Query: 335 GSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADIC 394
V +I D G + + +++ L +V+ T + V G +P+ I +
Sbjct: 115 ---TVRVIPVDPNGLLDLD----ALEKLLTPRTK--LVAITHVSNVTGTVNPVEEIGKLA 165
Query: 395 AEY------DMADSV 403
EY D A +V
Sbjct: 166 HEYGALVVVDAAQAV 180
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 34.0 bits (78), Expect = 0.23
Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 24/175 (13%)
Query: 228 VDP--YGLVGQWLADAL-NPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGS 284
+DP + WL + NPS T+E E Q+ +G + IF G +
Sbjct: 10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGAT 69
Query: 285 MANGYAI-SCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSI-KKLAAFEGLGSDNVYLI 342
+N AI AR K + TS H ++ + + A E G YL
Sbjct: 70 ESNNLAILGLARAGEQKGKKH----------IITSAIEHPAVLEPIRALERNGFTVTYL- 118
Query: 343 KTDARGRMLPESLRGEIQ-RTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396
D GR+ + L I+ TL VS G+ PI IA++
Sbjct: 119 PVDESGRIDVDELADAIRPDTLL-------VSIMHVNNETGSIQPIREIAEVLEA 166
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 32.5 bits (75), Expect = 0.55
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 32/134 (23%)
Query: 203 DLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHV 262
D + + + + Y+VNQ +P + GQ E+
Sbjct: 108 DAIALAKELAEEDPGAYYVNQ---FDNPANIAGQ--------GTIGLEI----------- 145
Query: 263 LAQMRTIVGFQGGDGIFCP--GGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSED 320
L Q+ G Q D + P GG G A A P +K + P +V + E+
Sbjct: 146 LEQL----GGQKPDAVVVPVGGGGNIAGIAR--ALKELLPNVKV--IGVEPEVVTVSDEE 197
Query: 321 AHYSIKKLAAFEGL 334
A +I+ LA EG+
Sbjct: 198 ALEAIRLLAREEGI 211
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 31.5 bits (72), Expect = 1.3
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 34/133 (25%)
Query: 317 TSEDAHYSI----KKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMV 372
S+ H+S ++LA G V +I D G + ++L I +V
Sbjct: 116 VSDLEHHSNIVPWQELAKRTGA---KVRVIPLDDDGLLDLDALEKLITPK------TKLV 166
Query: 373 SATSGTTVLGAFDPIPAIADICAEY------DMA---------------DSVTWNPHKLL 411
+ + + V G +P+ IA++ E+ D A D + ++ HK L
Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL 226
Query: 412 TAPQQCSVFLTRR 424
P V R+
Sbjct: 227 LGPTGIGVLYVRK 239
>gnl|CDD|217050 pfam02460, Patched, Patched family. The transmembrane protein
Patched is a receptor for the morphogene Sonic Hedgehog.
This protein associates with the smoothened protein to
transduce hedgehog signals.
Length = 801
Score = 31.2 bits (71), Expect = 2.0
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 333 GLGSDNVYLI-----KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL----GA 383
+G D+++L+ +T S++ + TL+E ++ TS T VL G
Sbjct: 291 AIGVDDMFLMVHAWQRTTKT-----LSVKKRMGETLSEAGPS--ITITSLTNVLSFGIGT 343
Query: 384 FDPIPAIADICA 395
+ P PAI C
Sbjct: 344 YTPTPAIQLFCL 355
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP
cleavage-activation. Sterol regulatory element-binding
proteins (SREBPs) are membrane-bound transcription
factors that promote lipid synthesis in animal cells.
They are embedded in the membranes of the endoplasmic
reticulum (ER) in a helical hairpin orientation and are
released from the ER by a two-step proteolytic process.
Proteolysis begins when the SREBPs are cleaved at
Site-1, which is located at a leucine residue in the
middle of the hydrophobic loop in the lumen of the ER.
Upon proteolytic processing SREBP can activate the
expression of genes involved in cholesterol biosynthesis
and uptake. SCAP stimulates cleavage of SREBPs via
fusion of the their two C-termini. This domain is the
transmembrane region that traverses the membrane eight
times and is the sterol-sensing domain of the cleavage
protein. WD40 domains are found towards the C-terminus.
Length = 153
Score = 29.1 bits (66), Expect = 3.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 333 GLGSDNVYLI-----KTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVL----GA 383
+G DN++L+ +T L R I L E TS T +L GA
Sbjct: 48 AVGVDNMFLLVHAVQRTPRS---LDVEER--IAEALGEVGPSIT--LTSLTELLAFLIGA 100
Query: 384 FDPIPAIADICA 395
P+PA+ + C
Sbjct: 101 LTPMPAVQEFCL 112
>gnl|CDD|233760 TIGR02171, Fb_sc_TIGR02171, Fibrobacter succinogenes paralogous
family TIGR02171. This model describes a paralogous
family of the rumen bacterium Fibrobacter succinogenes.
Eleven members are found in Fibrobacter succinogenes
S85, averaging over 900 amino acids in length. More than
half are predicted lipoproteins. The function is
unknown.
Length = 912
Score = 30.2 bits (68), Expect = 4.3
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 19/129 (14%)
Query: 146 LIDLMKTVIQYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLM 205
+D +K I Y Y + F + W + + + G + ++ +
Sbjct: 752 FVDAVKEGILYPSALRCDYIIRGRFLLPTSCWGSWPVANFDATIS-DPGQQIINENMNSL 810
Query: 206 KTVIQYSVKTG----------HPYFVNQLFSSVDPYGL---VGQWLADALNPSVYTYEVS 252
K I + K G P + N S YG + + + D+ TY
Sbjct: 811 KAFIDETAKKGVKVIGTIFPQSPGYKNT--GSFGRYGPRRSIAKKIIDSFKKMEKTY--- 865
Query: 253 PVFSLMEEH 261
P F L +E+
Sbjct: 866 PHFILFDEN 874
>gnl|CDD|66448 pfam02763, Diphtheria_C, Diphtheria toxin, C domain. N-terminal
catalytic (C) domain - blocks protein synthesis by
transfer of ADP-ribose from NAD to a diphthamide residue
of EF-2.
Length = 187
Score = 29.0 bits (64), Expect = 5.0
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 30 YNSSDDETLEAGSKFDHFR----ASGAGYRFTSGGLAGELQVPAREGKPAGKTSGVCSYE 85
+ S+D++ AG D+ +G + T GL L + + K G+ E
Sbjct: 53 FYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTE 112
Query: 86 SLPEQVRHERFFR----DAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGF 136
L EQV E F + A V+L + +S +N W + L +LE+ F
Sbjct: 113 PLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINF 167
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 29.6 bits (67), Expect = 5.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 48 RASGAGYRFTSGGLAGELQVPAREGKPAG 76
A GA R S G AG Q R G+P G
Sbjct: 318 AAGGARARARSAGGAGAAQKGNRRGRPLG 346
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 29.6 bits (67), Expect = 5.3
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 348 GRML-PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD---MADSV 403
G + PE EI L + V+ T T G +P+ I + ++D + D+V
Sbjct: 108 GEAVSPE----EIAEALEQHD-IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAV 162
Query: 404 T 404
+
Sbjct: 163 S 163
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 29.5 bits (66), Expect = 5.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 385 DPIPAIADICAEYDM 399
D + IA ICAEYD+
Sbjct: 172 DRVKEIAKICAEYDV 186
>gnl|CDD|224595 COG1681, FlaB, Archaeal flagellins [Cell motility and secretion].
Length = 209
Score = 28.8 bits (65), Expect = 6.6
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 192 NAGPSSHAKLIDLMKTVIQYSVK---TGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYT 248
NAG S IDL KT I S Y +++ + W N +
Sbjct: 82 NAGSSP----IDLSKTTITLSGPDKAATLTYSYGFSYATGGTANIFNVWSTIKGNSWSFG 137
Query: 249 YEV 251
V
Sbjct: 138 IIV 140
>gnl|CDD|218981 pfam06307, Herpes_IR6, Herpesvirus IR6 protein. This family
consists of several Herpesvirus IR6 proteins. The equine
herpesvirus 1 (EHV-1) IR6 protein forms typical rod-like
structures in infected cells, influences virus growth at
elevated temperatures, and determines the virulence of
EHV-1 Rac strains.
Length = 214
Score = 28.7 bits (64), Expect = 7.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 66 QVPAREGKPAGKTSGVCSYESLPEQVRHERFFRDAFEVLLRDGVF 110
P A V S+E++P R RFF+ L DG F
Sbjct: 47 TKPLLVPVEADVAGEVLSFEAVPAPKREVRFFKQ-----LYDGTF 86
>gnl|CDD|113403 pfam04631, Baculo_44, Baculovirus hypothetical protein. This
family includes several hypothetical baculoviral
proteins, with predicted molecular weights of
approximately 44 kD.
Length = 372
Score = 29.2 bits (66), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 560 KEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPN 599
K+ Q ++NE L + I+E + + Y P+H LPN
Sbjct: 25 KKAQEEYNETLDERIEYIEEVLRRR-----RYVPLHTLPN 59
>gnl|CDD|177235 MTH00184, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 519
Score = 29.0 bits (65), Expect = 9.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 543 PECTNISFWYIPPSL 557
P NISFW +PP+L
Sbjct: 97 PRLNNISFWLLPPAL 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,227,252
Number of extensions: 3156045
Number of successful extensions: 2829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2789
Number of HSP's successfully gapped: 48
Length of query: 629
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 526
Effective length of database: 6,369,140
Effective search space: 3350167640
Effective search space used: 3350167640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)