RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1785
(629 letters)
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 540 bits (1394), Expect = 0.0
Identities = 245/467 (52%), Positives = 327/467 (70%), Gaps = 21/467 (4%)
Query: 171 SSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDP 230
S KV EW PEEL++ L+L + S ++++ + VI+YSVKTGHP F NQLFS +DP
Sbjct: 62 SQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDP 121
Query: 231 YGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYA 290
+ L G+ + ++LN S YTYE++PVF LMEE VL ++R +VG+ GDGIFCPGGS++N YA
Sbjct: 122 HALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYA 181
Query: 291 ISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRM 350
++ AR+ +P K +GL + P L L+TS++ HYSI+K AAF GLG+D+V ++K D RG+M
Sbjct: 182 VNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKM 241
Query: 351 LPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDM---ADSVTWNP 407
+PE L +I AEGAVPF+VSATSGTTVLGAFDP+ AIAD+C + + D
Sbjct: 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVD------ 295
Query: 408 HKLLTAPQQCSVFL--TRRNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQS-VLTE 462
A SV L T R+ + I+ ADSV WNPHKLL A QCS L + S +L
Sbjct: 296 -----AAWGGSVLLSQTHRHLLDGIQ-RADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349
Query: 463 CHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDN 522
CH + ASYLFQ+DKFYD D+GDK +QCGR+ D LK W MWKA+G GLE ID++F
Sbjct: 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVL 409
Query: 523 AKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMM 582
A+Y ++++ R GF+LV+ EPE N+ FW++PPSLRGK++ D++E L KVAP +KERM+
Sbjct: 410 ARYLVEEMKKREGFELVM-EPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV 468
Query: 583 KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
K GSMMI YQP NFFR+V+ NSAL +DMD+ ++E+ERLG DL
Sbjct: 469 KEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 538 bits (1389), Expect = 0.0
Identities = 222/472 (47%), Positives = 304/472 (64%), Gaps = 25/472 (5%)
Query: 171 SSKVNEWVNPEELEKKLE---LGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSS 227
S+KV ++ +P +L + +E L + P S +++ + ++Y V+TGHP F NQL +
Sbjct: 43 STKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG 102
Query: 228 VDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF--QGGDGIFCPGGSM 285
+D GL G+WL N +++TYE++PVF LME+ L +MR IVG+ + GDGIF PGG++
Sbjct: 103 LDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAI 162
Query: 286 ANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTD 345
+N Y+I AR+ FP++KT+G+A+ P+LVL+TSE +HYSIKK A G G+DNV LIK +
Sbjct: 163 SNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN 222
Query: 346 ARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDM---ADS 402
RG+++P +I +G VPF V+AT+GTTV GAFDPI IADIC +Y++ D
Sbjct: 223 ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD- 281
Query: 403 VTWNPHKLLTAPQQCSVFL--TRRNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQS 458
A + + R+ + IE A+SVTWNPHK++ QCS L + +
Sbjct: 282 ----------AAWGGGLLMSRKHRHKLNGIE-RANSVTWNPHKMMGVLLQCSAILVKEKG 330
Query: 459 VLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDK 518
+L C+ A YLFQ DK YD YD+GDK IQCGR D+ KFW MWKAKGT G E I+K
Sbjct: 331 ILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINK 390
Query: 519 SFDNAKYFTDKIRHRPGFKLVLD-EPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKI 577
+ A+Y KI++R F++V + EPE TN+ FWYIP SLRG D E LHKVAPKI
Sbjct: 391 CLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKI 450
Query: 578 KERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
K MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 451 KALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 472 bits (1216), Expect = e-162
Identities = 104/525 (19%), Positives = 203/525 (38%), Gaps = 57/525 (10%)
Query: 123 VNPEELEKKLELGFNAGPSSHGKLIDLMKTVIQYSVKTGHPYFVNQLFSSKVNEWVNPEE 182
V E+ + + G + +M F + ++P+
Sbjct: 11 VEAAPQEEWKKHFIHTGELGSAEFASVMSHTTSAMKS----VFEQ---VNAPYSGMDPKA 63
Query: 183 LEKKL-ELGFNAGPSSHAKLI-DLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLAD 240
LE + + + + +I D+ + V + ++ T HP + L + + + +
Sbjct: 64 LEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIA 123
Query: 241 ALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF-QGGDGIFCPGGSMANGYAISCARHHAF 299
ALN S+ +++ + + +E+ V+ + + DGIF GG+ +N + AR
Sbjct: 124 ALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIA 183
Query: 300 PQIKTQGL------ASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPE 353
++ + +L + S+ +H++++K A++ GLG V + +A G M
Sbjct: 184 DKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDIT 243
Query: 354 SLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH----- 408
L I + AEG +PF + T+GTT GA D + IAD+ ++DM W H
Sbjct: 244 KLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM-----WM-HVDGAY 297
Query: 409 --KLLTAPQQCSVFLTRRNYV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECH 464
L+ S + ++ + +E A S++ + HKL C L +S +
Sbjct: 298 GGALI-----LS---SHKSRLKGVE-RAHSISVDFHKLFYQTISCGALLVNDKSNF-KFL 347
Query: 465 SASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAK 524
A YL ++ +D + DK I ++ D LK + + G L D
Sbjct: 348 LHHADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTL 404
Query: 525 YFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKS 584
D IR F+L+ EP + + F + L ++ ++ +
Sbjct: 405 EVADMIRTNDQFELLA-EPSLSTVLFRATHET-----------ADLDELNKALRLEALTR 452
Query: 585 GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
G ++ + + + N L SD + + +I L +L
Sbjct: 453 GIAVLGETIVDG-KTALKFTILNPCLTTSDFESLLSKINMLAVEL 496
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 402 bits (1035), Expect = e-135
Identities = 104/490 (21%), Positives = 187/490 (38%), Gaps = 61/490 (12%)
Query: 165 FVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLI-DLMKTVIQYSVKTGHPYFVNQ 223
+++ + +V V P L +L P S + D+ + ++ V P+
Sbjct: 25 YLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAY 84
Query: 224 LFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF----------Q 273
+ L+G LADA+N +T+ SP + +E +V+ + ++G
Sbjct: 85 YPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSS 144
Query: 274 GGDGIFCPGGSMANGYAISCARHHAFPQIKTQG-----LASCPRLVLYTSEDAHYSIKKL 328
G G+ S + A+ AR + ++KT + RLV Y S+ AH S++K
Sbjct: 145 QGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKA 204
Query: 329 AAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIP 388
+ + + D + E+L+ I+ G VP V AT GTT + AFD +
Sbjct: 205 GLISLV---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLS 261
Query: 389 AIADICAEYDMADSVTWNPH-------KLLTAPQQCSVFLTRRNYV--IEVVADSVTWNP 439
+ ICA + W H P+ R ++ IE ADS T+NP
Sbjct: 262 ELGPICAREGL-----W-LHIDAAYAGTAFLCPE-------FRGFLKGIE-YADSFTFNP 307
Query: 440 HKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLK 499
K + C+ F + + L + S + YL + T + I R+ +K
Sbjct: 308 SKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRSVK 365
Query: 500 FWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRG 559
WF+ ++ G L+AH+ + AKYF +R+ P F++ + + F P+
Sbjct: 366 LWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGLVVFRLKGPN--- 421
Query: 560 KEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFI 619
E + + + K+G + + I R + + D+
Sbjct: 422 -----SLTE-------NVLKEIAKAGRLFLIPATIQDKL-IIRFTVTSQFTTRDDILRDW 468
Query: 620 DEIERLGHDL 629
+ I +
Sbjct: 469 NLIRDAATLI 478
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 393 bits (1012), Expect = e-131
Identities = 97/489 (19%), Positives = 180/489 (36%), Gaps = 58/489 (11%)
Query: 165 FVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKT-GHPYFVNQ 223
++ + +V V P L + P + ++ ++ +I V PYF
Sbjct: 20 YLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAY 79
Query: 224 LFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGF---------QG 274
++ ++ L A+ +++ SP + +E ++ + ++
Sbjct: 80 FPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGE 139
Query: 275 GDGIFCPGGSMANGYAISCARHHAFPQIKTQ-----GLASCPRLVLYTSEDAHYSIKKLA 329
G G+ S A A+ AR +++ A +LV Y S+ AH S+++
Sbjct: 140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAG 199
Query: 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPA 389
G+ + I +D + M +L+ ++R A G +PF V AT GTT +FD +
Sbjct: 200 LIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLE 256
Query: 390 IADICAEYDMADSVTWNPH-------KLLTAPQQCSVFLTRRNYV--IEVVADSVTWNPH 440
+ IC E D+ W H P+ R+ + +E ADS +NPH
Sbjct: 257 VGPICHEEDI-----W-LHVDAAYAGSAFICPE-------FRHLLNGVE-FADSFNFNPH 302
Query: 441 KLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKF 500
K L CS + ++ LT YL + D + GR+ LK
Sbjct: 303 KWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM 362
Query: 501 WFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGK 560
WF+++ G GL+A+I K + F + P F++ E + F
Sbjct: 363 WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVCFRLKGSD---- 417
Query: 561 EDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFID 620
NE + ER+ + + + + R + + ++ + +
Sbjct: 418 ----GLNE-------ALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWE 465
Query: 621 EIERLGHDL 629
I L +L
Sbjct: 466 HIRGLAAEL 474
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 393 bits (1011), Expect = e-131
Identities = 102/506 (20%), Positives = 187/506 (36%), Gaps = 66/506 (13%)
Query: 148 DLMKTVIQYSVKTGHPYFVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKT 207
D KT++ + + ++ + +V V P L+ + P ++ ++
Sbjct: 8 DFAKTMVDFIAE-----YLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIER 62
Query: 208 VIQYSVKT-GHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQM 266
VI V P F ++ +V L+ A+ +T+ SP + +E ++ +
Sbjct: 63 VIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWL 122
Query: 267 RTIVGF---------QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQ-----GLASCPR 312
++ G G+ S + A+ A+ ++K +
Sbjct: 123 GKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGK 182
Query: 313 LVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMV 372
LV Y S+ AH S+++ G+ +V RM +L I++ +AEG +PF
Sbjct: 183 LVGYCSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYA 238
Query: 373 SATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH-------KLLTAPQQCSVFLTRRN 425
T GTT AFD + + ++++ W H P+ R+
Sbjct: 239 VVTLGTTNSCAFDYLDECGPVGNKHNL-----W-IHVDAAYAGSAFICPE-------YRH 285
Query: 426 YV--IEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYD 483
+ IE ADS +NPHK + CS + S + + YL K + D
Sbjct: 286 LMKGIE-SADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPD 342
Query: 484 SGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEP 543
I GR+ LK WF+ + G + L+AHI + + AK F D F+L E
Sbjct: 343 YRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA-EI 401
Query: 544 ECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRL 603
+ F + + NE + +R+ G + + I + F R+
Sbjct: 402 NMGLVCFRLKGSN--------ERNE-------ALLKRINGRGHIHLVPAKIKDV-YFLRM 445
Query: 604 VLQNSALDHSDMDYFIDEIERLGHDL 629
+ + DM+Y E+ ++
Sbjct: 446 AICSRFTQSEDMEYSWKEVSAAADEM 471
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 138 bits (349), Expect = 2e-35
Identities = 55/320 (17%), Positives = 96/320 (30%), Gaps = 55/320 (17%)
Query: 252 SPVFSLMEEHVLAQMRTIVGFQG----GDGIFCPGGSMANGYAISCARHHAFPQIKTQGL 307
+ S+M + + G G M+ +S AR
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLNVHAIATPISTG-MSISLCLSAARKKY--------- 174
Query: 308 ASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGA 367
+V+Y +H S K +F G+ V + R + E + I++ + G
Sbjct: 175 --GSNVVIY-PYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN 231
Query: 368 VPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQ-QCSVFLTRRNY 426
P V +T D I IA IC YD+ PH + A Q + +L +
Sbjct: 232 RP-CVLSTLTFFPPRNSDDIVEIAKICENYDI-------PHIINGAYAIQNNYYLEKLKK 283
Query: 427 VIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGD 486
+ D+V + K L P + + + S SY
Sbjct: 284 AFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI---KEISLSYP--------------- 325
Query: 487 KHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFK----LVL 540
GR V+ + G+ + ++ K + + L +
Sbjct: 326 -----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV 380
Query: 541 DEPECTNISFWYIPPSLRGK 560
+ P + IS P + K
Sbjct: 381 ESPIASCISVNSDPVEIAAK 400
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 126 bits (319), Expect = 9e-32
Identities = 68/450 (15%), Positives = 150/450 (33%), Gaps = 81/450 (18%)
Query: 197 SHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFS 256
S ++++ +K +K + S+V P + + + L ++ +
Sbjct: 11 SEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLP--ITRKIVDIFLETNLGDPGLFKGTK 68
Query: 257 LMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLY 316
L+EE +A + +++ + G GG+ AN A+ C ++ + + + +GL+ +
Sbjct: 69 LLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNI-WREKRRKGLSKNEHPKII 127
Query: 317 TSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATS 376
AH+S +K L + + ++ ++ + +
Sbjct: 128 VPITAHFSFEKGREMMDLE---YIYAPIKEDYTIDEKFVKDAVED-----YDVDGIIGIA 179
Query: 377 GTTVLGAFDPIPAIADICAEYDM---ADSVTWNPHKLLTAPQQCS-----VFLTRRNYVI 428
GTT LG D I ++ I E ++ D+ FL +
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDA--------------AFGGLVIPFLDDKYKKK 225
Query: 429 EVV--------ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDT 480
V DS+T +PHK+ P L + A YL
Sbjct: 226 GVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIG-YKRYLDVDAPYL--------- 275
Query: 481 KYDSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKL 538
++ I G + + + + G +G +++ +N Y K++ FK
Sbjct: 276 -TETRQATIL-GTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKP 332
Query: 539 VLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALP 598
V+ EP ++ ++ + + +++ G +
Sbjct: 333 VI-EPILNIVAI-------EDEDYKE------------VCKKLRDRGIYVSVCN----CV 368
Query: 599 NFFRLVLQNSALDHSDMDYFIDEIERLGHD 628
R+V+ + +D FI+ + + D
Sbjct: 369 KALRIVVMPH-IKREHIDNFIEILNSIKRD 397
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 124 bits (312), Expect = 2e-30
Identities = 68/439 (15%), Positives = 138/439 (31%), Gaps = 61/439 (13%)
Query: 203 DLMKTVIQYSVKTGHPYFVNQLFSSV-----DPYGLVGQWLADALNPSVYTYEVSPVFSL 257
+++ + + +V + + A + ++ P +
Sbjct: 80 EILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAK 139
Query: 258 MEEHVLAQMRTIVGFQGGD----GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRL 313
E V+A ++G G GG+ + A+ R A T+G+ + P
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR---ATKGITA-PEA 195
Query: 314 VLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVS 373
V+ AH + K A + G+ + DA R ++R I +V+
Sbjct: 196 VV--PVSAHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPN------TVVVA 244
Query: 374 ATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTA-PQQCSVFLTRRNYVIEVVA 432
++ G DPIP IA + AE+ + V + ++ + ++ +E V
Sbjct: 245 GSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV- 303
Query: 433 DSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCG 492
SV+ + HK + SV L R +L + +A +
Sbjct: 304 TSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP---------GGLYFSPTFAGS 354
Query: 493 RKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISF 550
R P W + G +G + A +R P K++ I+
Sbjct: 355 R-PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKIL--GDPLWVIAV 411
Query: 551 WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL 610
D+ + +++ M G + P F + L
Sbjct: 412 ---------ASDELNIYQVME--------EMAGRGWRLNGLH----RPPAFHVALTLRHT 450
Query: 611 DHSDMDYFIDEIERLGHDL 629
+ +D F+ +++ +
Sbjct: 451 EPGVVDRFLADLQDAVAQV 469
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 116 bits (291), Expect = 9e-28
Identities = 66/435 (15%), Positives = 134/435 (30%), Gaps = 62/435 (14%)
Query: 203 DLMKTVIQYSVKTGHPYFVNQLFSSVDPYGL--VGQWLADALNPSVYT----YEVSPVFS 256
D+++ + + + H + S +G + A +V P
Sbjct: 47 DVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVR 106
Query: 257 LMEEHVLAQMRTIVGF--QGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLV 314
ME V++ + + G G GG+ + A A+ +A
Sbjct: 107 KMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGIT------EPE 160
Query: 315 LYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSA 374
+ AH K A + G+ +V L ++ ++ I + ++
Sbjct: 161 IIAPVTAHAGFDKAAYYFGMKLRHVEL--DPTTYQVDLGKVKKFINKN------TVLLVG 212
Query: 375 TSGTTVLGAFDPIPAIADICAEYDMADSV--TWNPHKLLTAPQQCSVFLTRRNYVIEVVA 432
++ G D I + I +Y + V + + L ++ + V
Sbjct: 213 SAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV- 271
Query: 433 DSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCG 492
S++ + HK AP+ SV + R+ + + + ++ G +
Sbjct: 272 TSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT---------GGLYGSPTLAGS 322
Query: 493 RKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR-HRPGFKLVLDEPECTNIS 549
R P V+ W G +G + A F I+ + P ++ P + IS
Sbjct: 323 R-PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLD-IMGNPRYSVIS 380
Query: 550 FWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA 609
F K N +H+++ +R+ K G Q P + +
Sbjct: 381 F-------SSK----TLN--IHELS----DRLSKKGWHFNALQ----KPVALHMAFTRLS 419
Query: 610 LDHSDMDYFIDEIER 624
D D +
Sbjct: 420 AHVVDE--ICDILRT 432
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 115 bits (288), Expect = 2e-27
Identities = 54/396 (13%), Positives = 125/396 (31%), Gaps = 55/396 (13%)
Query: 250 EVSPVFSLMEEHVLAQMRTIVGFQGGD-----GIFCPGGSMANGYAISCARHHAFPQIKT 304
+ PV + ++ + + + + G+ G S A A + + K
Sbjct: 88 DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147
Query: 305 QGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLA 364
+G + + T + +K A + + V L ++ M P+ +
Sbjct: 148 EGK-PVDKPNIVTGANVQVCWEKFARYFEVELKEVKL--SEGYYVMDPQQAVDMVDEN-- 202
Query: 365 EGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH-------KLLTAPQQC 417
V+A G+T+ G F+ + + D+ E + H +
Sbjct: 203 ----TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE 258
Query: 418 SVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF 477
+ R V S+ + HK + R++ L E +YL
Sbjct: 259 LEWDFRLPLV-----KSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL------ 307
Query: 478 YDTKYDSGDKHIQCGRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPG 535
D + + V+ ++ G +G ++ +N + +
Sbjct: 308 ---GADQPTFTLNFSK-GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTER 363
Query: 536 FKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQ--P 593
F +V + ++F +D + E +I + + + G ++ Y P
Sbjct: 364 FNIVSKDEGVPLVAF--------SLKDSSCHTE------FEISDMLRRYGWIVPAYTMPP 409
Query: 594 IHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 629
R+V++ + + + +IE++ +L
Sbjct: 410 NAQHITVLRVVIRED-FSRTLAERLVIDIEKVMREL 444
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 90.4 bits (224), Expect = 2e-19
Identities = 47/342 (13%), Positives = 100/342 (29%), Gaps = 47/342 (13%)
Query: 250 EVSPVFSLMEEHVLAQMRTIVGFQGGD-----GIFCPGGSMANGYAISCARHHAFPQIKT 304
E P + ++ + + + G G S A + +++
Sbjct: 74 EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133
Query: 305 QGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLA 364
G + ++ K A + + + + + M P+ +
Sbjct: 134 AGKPTDKPNLV--CGPVQICWHKFARYWDVELREIPM--RPGQLFMDPKRMIEACDEN-- 187
Query: 365 EGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH-----KLLTAPQQCS- 418
V T G T G ++ + D ++ + + H AP
Sbjct: 188 ----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 243
Query: 419 -VFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKF 477
V+ R V S++ + HK AP C + R + L + + YL
Sbjct: 244 IVWDFRLPRV-----KSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL------ 292
Query: 478 YDTKYDSGDKHIQC---GRKP--DVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRH 532
G + +P V+ ++ + G +G + S+ A Y D+I
Sbjct: 293 -------GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 345
Query: 533 RPGFKLVLD-EPECTNISF-WYIPPSLRGKEDQADFNELLHK 572
++ + P+ + + + D +E L
Sbjct: 346 LGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRL 387
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 5e-13
Identities = 90/565 (15%), Positives = 157/565 (27%), Gaps = 164/565 (29%)
Query: 143 HGKLIDLMKTVIQYS----VKTGHPYFVNQLFSSKVNEWVNP----EELEKKLELGFNAG 194
H +D QY + FV+ V + EE++ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----- 57
Query: 195 PSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADAL-----NPS---- 245
+ + + L T++ + FV ++ Y +L + PS
Sbjct: 58 KDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLR--INYK----FLMSPIKTEQRQPSMMTR 110
Query: 246 VYTYEVSPVFS----LMEEHV------------LAQMR--TIVGFQGGDGIFCPGGS-MA 286
+Y + +++ + +V L ++R V G G G + +A
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVA 167
Query: 287 NGYAISCARHHAFP-QIK--TQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIK 343
+S +I + P VL + Y I S N+
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---- 223
Query: 344 TDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSV 403
++ S++ E++R L +L + ++ ++
Sbjct: 224 -----KLRIHSIQAELRRLLKSKPYE--------NCLL--------VLL-----NVQNAK 257
Query: 404 TWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC 463
WN L C + LT R + V D L+A + L H LT
Sbjct: 258 AWNAFNL-----SCKILLTTRF---KQVTDF--------LSAATTTHISLDHHSMTLTPD 301
Query: 464 HSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKF-----------WFMWKAKGTDGL 512
S L K + D + P L W WK D L
Sbjct: 302 EVKS---LLLK--YLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 513 EAHIDKSFDNAKYFTDKIRHRPGFKL--VLDEPECTNIS------FWYIPPSLRGKEDQA 564
I+ S + + + R F V P +I W+ D
Sbjct: 356 TTIIESSLNVLE--PAEYRKM--FDRLSVF--PPSAHIPTILLSLIWFDVIK----SDVM 405
Query: 565 DFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQ--------NSALDH---- 612
LH K +++ T I ++ + L ++ S +DH
Sbjct: 406 VVVNKLH------KYSLVEKQPKESTIS-IPSI--YLELKVKLENEYALHRSIVDHYNIP 456
Query: 613 --SDMDYFIDEIER------LGHDL 629
D D I +GH L
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHL 481
Score = 36.4 bits (83), Expect = 0.032
Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 52/181 (28%)
Query: 82 CSYESLPEQV-RHERFFRDAFEVLLRDGVFKATSRGNKVNEW--VNPEELEKKLELGFNA 138
C + LP +V +RDG+ + W VN ++L +E N
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGL-------ATWDNWKHVNCDKLTTIIESSLNV 365
Query: 139 -GPSSHGKLIDLMKTVIQYSVKTGHPY-----------------FVNQLFS-SKVNEWVN 179
P+ + K+ D + +V S P VN+L S V +
Sbjct: 366 LEPAEYRKMFDRL-SVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 180 PE---------ELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDP 230
EL+ KLE + H ++D Y++ + + +D
Sbjct: 423 ESTISIPSIYLELKVKLE----NEYALHRSIVD------HYNIPKTFDSD-DLIPPYLDQ 471
Query: 231 Y 231
Y
Sbjct: 472 Y 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 82/535 (15%), Positives = 147/535 (27%), Gaps = 200/535 (37%)
Query: 2 PAESNACLISAYTQTCPFESDSEKTGSEYNSSDDETLEAGSKFDHFRASGAGYRFTSGG- 60
PAE L+ + + K G D+ L F + G
Sbjct: 57 PAE----LVGKFLGYVSSLVEPSKVGQ-----FDQVLNLC--LTEFEN-----CYLEGND 100
Query: 61 ---LAGELQVPAREGKPAGKTSGVC-SYESLPEQVRHERFFRDAFEVLLRDGVFKATSRG 116
LA +L KT + +Y A
Sbjct: 101 IHALAAKL--LQENDTTLVKTKELIKNY-------------------------ITARIMA 133
Query: 117 NKVNEWVNPEELEKKLELGFNAGPSSHGKLIDLMKTVI---QYSVKTGHP--YFVNQLFS 171
+ + + L F A + +L+ I Q G+ YF
Sbjct: 134 KRPFDKKSNSAL-------FRAVGEGNAQLV-----AIFGGQ-----GNTDDYF------ 170
Query: 172 SKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPY 231
EEL +L + LI + ++ ++F
Sbjct: 171 ---------EELR---DL-YQTYHVLVGDLIKFSAETLSELIR--TTLDAEKVF----TQ 211
Query: 232 GL-VGQWLADALN-PSVY---TYEVS-PVFSLMEEHVLAQ---MRTIVGFQGGD------ 276
GL + +WL + N P + +S P+ +++ LA ++GF G+
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLK 268
Query: 277 GIF-CPGG-------SMANGYA---------------ISCARHHAFPQI----------- 302
G G + + + I + A+P
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 303 -KTQGLASCPRLVL--YTSEDAHYSIKKLAAFEGLGSD-NVYLIKTDARGRML-----PE 353
+G+ S P L + T E + K + G + L+ + L P+
Sbjct: 329 ENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA---KNLVVSGPPQ 384
Query: 354 SLRG---EIQRTLAEGA-----VPFMVSATSGTTVLGAFDPI----------PAIADICA 395
SL G +++ A +PF + F P+ PA I
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINK 441
Query: 396 EYDMADSVTWNPHKLLTAPQQCSVFLTR-----RNY---VIEVVADSVT-----W 437
+ + ++V++N + Q V+ T R + E + D + W
Sbjct: 442 D-LVKNNVSFNAKDI-----QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 57.4 bits (138), Expect = 1e-08
Identities = 92/560 (16%), Positives = 164/560 (29%), Gaps = 188/560 (33%)
Query: 142 SHGKLIDLMKTVIQYS--VKTGHPYFVNQL---FSSKV----------NEWVNPEELEKK 186
SHG +++ V T + +QL F+ + +E P EL K
Sbjct: 12 SHGS--------LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 187 LELGFNAG---PSSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLVGQWLADALN 243
LG+ + PS + ++ + F N D + L + L +
Sbjct: 64 F-LGYVSSLVEPSKVGQFDQVLNLCLTE--------FENCYLEGNDIHALAAKLLQE--- 111
Query: 244 PSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIK 303
+ L + + ++ N AR A
Sbjct: 112 ---------------NDTTLVKTKELI---------------KNYIT---ARIMA----- 133
Query: 304 TQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTL 363
+ L+ + + + +A F G G+ + Y E LR ++ +T
Sbjct: 134 KRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDY----------FEE-LR-DLYQTY 180
Query: 364 AEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTW--NPHK------LLTAPQ 415
+ + L A+ + + + W NP LL+ P
Sbjct: 181 HVLVGDLIKFSAE---TLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI 236
Query: 416 QC-SVFLTR-RNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLT-ECHSASASYLF 472
C + + + +YV V A + + P +L Q ++T + + S+
Sbjct: 237 SCPLIGVIQLAHYV--VTAKLLGFTPGEL--RSYLKGA-TGHSQGLVTAVAIAETDSW-- 289
Query: 473 QKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDN----AKYFTD 528
+ F + S K I VL F+ G+ + +++ N D
Sbjct: 290 --ESF----FVSVRKAIT------VL-FFI--------GVRCY--EAYPNTSLPPSILED 326
Query: 529 KIRHRPG------------FKLVLDEPECTNISFW-----YI-------------PP-SL 557
+ + G + V D TN I PP SL
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 558 RGKEDQADFNELLHKV-AP------KIKERMMK-SGSMMITYQPIHALPNFFRLVLQNSA 609
G N L K AP +I K S + P+ + P F +L A
Sbjct: 387 YG------LNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLPVAS-P-FHSHLLV-PA 435
Query: 610 LDHSDMDYFIDEIERLGHDL 629
D + D + + D+
Sbjct: 436 SDLINKDLVKNNVSFNAKDI 455
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 51.6 bits (123), Expect = 5e-07
Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 37/225 (16%)
Query: 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPF 370
+ +++ S K G + + R +++ +IQ E +
Sbjct: 144 AKYIIW-PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE-HILC 201
Query: 371 MVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQ-QCSVFLTRRNYVIE 429
+ S T+ D + +A ICA YD+ PH + A Q S +
Sbjct: 202 LHSTTACFAP-RVPDRLEELAVICANYDI-------PHVVNNAYGLQSSKCMHLIQQGAR 253
Query: 430 V-VADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488
V D+ + K P ++ ++ + + S Y
Sbjct: 254 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD---ISKMYP----------------- 293
Query: 489 IQCGRKPD--VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR 531
GR L + G G + + + Y + +++
Sbjct: 294 ---GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK 335
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 47.4 bits (112), Expect = 1e-05
Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 37/225 (16%)
Query: 311 PRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPF 370
+ +++ S K G + + R +++ ++Q + +
Sbjct: 162 AKYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPD-CILC 219
Query: 371 MVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTA-PQQCSVFLTRRNYVIE 429
+ S TS D + +A ICA YD+ PH + A Q S +
Sbjct: 220 IHSTTSCFAP-RVPDRLEELAVICANYDI-------PHIVNNAYGVQSSKCMHLIQQGAR 271
Query: 430 V-VADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKH 488
V D+ + K P ++ + S + E S Y
Sbjct: 272 VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYP----------------- 311
Query: 489 IQCGRKPD--VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIR 531
GR L + G++G + + + + Y +++I+
Sbjct: 312 ---GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK 353
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 41.1 bits (97), Expect = 9e-04
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 25/143 (17%)
Query: 264 AQMRTIVGFQGGDGIFCPGGSMANGYAIS--CARHHAFPQIKTQGLASCPRLVLYTSEDA 321
+ ++ D F GG+ N A S A + ++
Sbjct: 56 RLIGELLERPDADVHFISGGTQTNLIACSLALRPWEA----------------VIATQLG 99
Query: 322 HYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAE-GAVPFMVSATSGTTV 380
H S + A E G V G++ + + +E +P +V ++ TT
Sbjct: 100 HISTHETGAIEATGH-KVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISN-TTE 156
Query: 381 LGA---FDPIPAIADICAEYDMA 400
+G + I+ C E+ +
Sbjct: 157 VGTQYTKQELEDISASCKEHGLY 179
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 39.9 bits (94), Expect = 0.002
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 24/129 (18%)
Query: 279 FCPGGSMANGYAIS--CARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336
P G+ AN +S +Y +H + + A E +
Sbjct: 64 LVPTGTAANALCLSAMTPPWGN----------------IYCHPASHINNDECGAPEFFSN 107
Query: 337 DNVYLIKTDARGRMLPESLRGEIQRTLAE--GAVPFMVS---ATSGTTVLGAFDPIPAIA 391
+ ++ LR + + + P VS AT ++ D I AI
Sbjct: 108 GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY-TLDEIEAIG 166
Query: 392 DICAEYDMA 400
D+C +
Sbjct: 167 DVCKSSSLG 175
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 39.7 bits (93), Expect = 0.002
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 27/151 (17%)
Query: 317 TSEDAHYSIKKLAAFEGLGSDNVYLIKTDAR-GRMLPESLRGEIQRTLAEGAVPFMVSAT 375
E+ HYS A E G + + KTD + PE+ I+ T G V + T
Sbjct: 98 MDENCHYSS--YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEV-VLALIT 154
Query: 376 SGTTVLGAFDPIPAIADICAEYDM---------------------ADSVTWNPHKLLTAP 414
G + IA +C+EYD+ AD + + HK + A
Sbjct: 155 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS 214
Query: 415 QQCSVFLTRRNYVIEVVADSVTWN--PHKLL 443
V + + V+ S + +LL
Sbjct: 215 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELL 245
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 38.6 bits (89), Expect = 0.006
Identities = 44/394 (11%), Positives = 116/394 (29%), Gaps = 45/394 (11%)
Query: 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA 308
Y S + +++ + + + I G A + + K +
Sbjct: 72 YAGSRNYYDLKDKA----KELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPV 125
Query: 309 SCPRLVLYTSEDAHYSIKKL-AAFEGLGSDNVYLIKTDA--RGRMLPESLRGEIQRTLAE 365
+ + ++ + ++ + +T +G + L+ I + A+
Sbjct: 126 FISN---FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 182
Query: 366 GAVPFMVSATSGTTVLGA---FDPIPAIADICAEYDM-----ADSVTWNPHKLLTAPQQC 417
+ +VS + + G + + +I ++ + + N + + +
Sbjct: 183 N-IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 241
Query: 418 -SVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDK 476
+ + + + AD++T + K + +F +
Sbjct: 242 KNATIKEVIFDMYKYADALTMSAKKDPLLN------------IGGLVAIRDNEEIFTLAR 289
Query: 477 FYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGF 536
+ + + + + + L I KY D++R
Sbjct: 290 QRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRI----GQVKYLGDRLREAGIP 345
Query: 537 KLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQP--- 593
+ + P + G + A +++ + + R ++ GS ++ P
Sbjct: 346 IQYPTGGHAVFVDCKKLVPQIPGDQFPA--QAVINALYLESGVRAVEIGSFLLGRDPATG 403
Query: 594 --IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625
HA F RL + + MDY D + L
Sbjct: 404 EQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 437
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 36.6 bits (84), Expect = 0.026
Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 19/140 (13%)
Query: 350 MLPESLRGEIQRT----LAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMA---DS 402
M PE+L+ +I + G P T+ T G D+ + D
Sbjct: 290 MQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDE 348
Query: 403 VTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQS---- 458
W + + T + HKLL A Q S R
Sbjct: 349 -AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAIN 407
Query: 459 ------VLTECHSASASYLF 472
+ S Y
Sbjct: 408 FSRFNQAYMMHATTSPLYAI 427
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 33.8 bits (78), Expect = 0.16
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 506 AKGTDGLEAHIDK---SFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKED 562
E I K F+ AK ++ G K V + P +N+ Y S E
Sbjct: 247 LSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPV-SNMFHVYFENS--ADEI 303
Query: 563 QADFNELLHK 572
A ++ +
Sbjct: 304 GAILTKIQDE 313
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 33.4 bits (77), Expect = 0.19
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 506 AKGTDGLEAHIDK---SFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKED 562
E D+ ++ AK ++ PG + P +N+ + +
Sbjct: 245 VSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPV-SNMFHLHFDGQ--AADI 301
Query: 563 QADFNELLHK 572
++ +
Sbjct: 302 SPKLEQVQEE 311
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 31.9 bits (72), Expect = 0.65
Identities = 30/217 (13%), Positives = 53/217 (24%), Gaps = 42/217 (19%)
Query: 352 PESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLL 411
++ ++ T P T+ T ++ I + W P+
Sbjct: 282 HATIAKRVKET-PNATWPVHAVITNSTYDGLLYN-TDFIKKTLDVKSIHFDSAWVPYTNF 339
Query: 412 TAP-QQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRH-------QSVLTEC 463
+ + R +E T + HKLL A Q S+ +
Sbjct: 340 SPIYEGKCGMSGGR---VEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMH 396
Query: 464 HSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNA 523
+ S Y S + M G + I+ S + A
Sbjct: 397 TTTSPHYGI---------VASTETAAA-----------MMKGNAG----KRLINGSIERA 432
Query: 524 KYFTDKIRHRPG-----FKLVLDEPECTNISFWYIPP 555
F +I+ F V W +
Sbjct: 433 IKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRS 469
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 31.6 bits (71), Expect = 0.86
Identities = 15/109 (13%), Positives = 24/109 (22%), Gaps = 19/109 (17%)
Query: 382 GAFDPIPAIADICAEYDMA---DSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWN 438
G + DS W ++ + S L + E V +
Sbjct: 294 GTIYNAHEVVKRIGHLCDYIEFDS-AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQS 352
Query: 439 PHKLLTAPQQCSVFLTRHQSVLTEC---------------HSASASYLF 472
HK Q S + + + S S Y
Sbjct: 353 VHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM 401
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 31.6 bits (72), Expect = 0.89
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 274 GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA 308
GG G P ++ N AI A H + P+ + +
Sbjct: 259 GGLGF-APSANIGNEVAIFEAVHGSAPKYAGKNVI 292
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 30.7 bits (70), Expect = 1.4
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
++ I+ + P+ + L +VS T G +PI AI + + +
Sbjct: 108 HLLEIEVPYNEAIDPQ----AVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAH 163
Query: 398 D---MADSVT 404
+ D+V+
Sbjct: 164 GAYLIVDAVS 173
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 30.8 bits (69), Expect = 1.5
Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 28/214 (13%)
Query: 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAIS--CARHHAFPQIKTQG 306
Y S + + E V + I G+Q I G A I + +
Sbjct: 70 YSGSRSYYALAESV----KNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 307 LASCPRLVLYT----SEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRT 362
+ + T S+ +++ + E + Y K G E L I+
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 363 LAEGAVPFMV----SATSGTTVLGAFDPIPAIADICAEYDM-----ADSVTWNPHKLLTA 413
VP++V S ++G + + + A+ I +YD+ + N + +
Sbjct: 180 GPN-NVPYIVATITSNSAGGQPV-SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQR 237
Query: 414 PQQC-SVFLTRRNYVIEVVADSVTWNPHKLLTAP 446
+ + + AD + + K P
Sbjct: 238 EAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 30.3 bits (69), Expect = 1.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 274 GGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA 308
G G+ P ++ + +I A H + P I Q A
Sbjct: 260 GSLGL-TPSANIGHKISIFEAVHGSAPDIAGQDKA 293
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 30.1 bits (67), Expect = 2.4
Identities = 55/397 (13%), Positives = 108/397 (27%), Gaps = 60/397 (15%)
Query: 249 YEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLA 308
Y S F +E V + + GF+ + G A A
Sbjct: 71 YAGSENFYHLERTV----QELFGFK--HIVPTHQGRGAENLLSQLAIKPGQ--------- 115
Query: 309 SCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYL-IKTDARGRMLPESLRGEIQRTLAEGA 367
+ +T+ H + + + + +G + + L+ I AE
Sbjct: 116 YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE-N 174
Query: 368 VPFMVSATSGTTVLGA---FDPIPAIADICAEY------DMADSVTWNPHKLLTAPQQCS 418
+ ++ A + G + A+ ++ + D V N + + Q
Sbjct: 175 IAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV-ENAYFIKEQEQGFE 233
Query: 419 VFLTRRNYVIEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDK 476
+ V E+ AD T + K +F K
Sbjct: 234 NK-SIAEIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDDE------------MFSSAK 279
Query: 477 FYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGF 536
Y+ + + + +A + +E + +Y DK++
Sbjct: 280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRV----KQVRYLGDKLKAAG-- 333
Query: 537 KLVLDEPECTNISF---WYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQP 593
+ + EP + F L E A L + + R M+ G +
Sbjct: 334 -VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQ--SLAASIYVETGVRSMERGIISAGRNN 390
Query: 594 -----IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 625
RL + ++ MD D I +L
Sbjct: 391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 3.7
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 29/90 (32%)
Query: 469 SYLFQKDKFYD--TKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYF 526
Q + Y K +S D + P + GLE K K+
Sbjct: 117 GMAIQVN--YSSEVKENSVDSDDKAKVPP---LIRIV------SGLELSDTKQ-KGKKFL 164
Query: 527 TDKIRHRPGFKLVLDEP-ECTNISFWYIPP 555
++ EP E NI+ +PP
Sbjct: 165 -----------VIAYEPFE--NIAI-ELPP 180
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 29.1 bits (66), Expect = 4.0
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
+++ + + PE ++ L + V+ T T G +P+P +A + E+
Sbjct: 120 KAVVLEYEPGKAVKPE----DLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEH 175
Query: 398 D---MADSVT 404
D D+V+
Sbjct: 176 DKLVFVDAVS 185
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 29.1 bits (66), Expect = 4.2
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
V+ + + E++ LA+ P ++ G + G P+ ++C Y
Sbjct: 123 RVHQMIKKPGEHYTLQ----EVEEGLAQHK-PVLLFLVHGESSTGVVQPLDGFGELCHRY 177
Query: 398 D---MADSVT 404
+ DSV
Sbjct: 178 QCLLLVDSVA 187
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 28.8 bits (65), Expect = 6.0
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEG---AVPFMVSA-TSGTTVLGAFDPIPAIADI 393
V+ I+ P+ +++ + + V TS TT+L P+ + +I
Sbjct: 113 EVHTIEVPWGEVFTPD----QVEDAVKRIRPRLL-LTVQGDTS-TTML---QPLAELGEI 163
Query: 394 CAEYD---MADSVT 404
C YD D+
Sbjct: 164 CRRYDALFYTDATA 177
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A*
3abm_A* 3ag1_A* ...
Length = 514
Score = 28.7 bits (65), Expect = 6.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 547 NISFWYIPPSL 557
N+SFW +PPS
Sbjct: 99 NMSFWLLPPSF 109
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.7 bits (65), Expect = 6.6
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 358 EIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYD---MADSVT 404
+ R L MV+ G T G +P AI + E D+VT
Sbjct: 115 AVARALKRRR-YRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVT 163
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 28.8 bits (65), Expect = 6.6
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
+V ++K+ + + EI+ L P ++ T G + G + + +C ++
Sbjct: 119 DVRVVKSKVGQSLSLD----EIRDALLIHK-PSVLFLTQGDSSTGVLQGLEGVGALCHQH 173
Query: 398 D---MADSVT 404
+ + D+V
Sbjct: 174 NCLLIVDTVA 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 7.2
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 301 QIKTQGLASCPRLVLYTSEDA-HYSIKKLAAFE 332
+K L + L LY + A +IK A E
Sbjct: 21 ALKK--LQA--SLKLYADDSAPALAIK--ATME 47
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 28.2 bits (63), Expect = 8.1
Identities = 31/207 (14%), Positives = 49/207 (23%), Gaps = 42/207 (20%)
Query: 400 ADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSV 459
AD V + HK L A SV +N +
Sbjct: 202 ADYVVQSFHKTLPALTMGSVLYIHKNAP----------YRENI--------------IEY 237
Query: 460 LTECHSASASYLFQK--DKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHID 517
L+ ++S SYL + R + + KG + L+
Sbjct: 238 LSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRA----QLIECLENKGFEMLQV--- 290
Query: 518 KSFDNAKYFTDKIRHRPGFKLV--LDE----PECTNISFWYIPPSLRGKEDQADFNELLH 571
D+ K G + E + L +D F+ LL
Sbjct: 291 ---DDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLR 347
Query: 572 KVAPKIKERMMKSGSMMITYQPIHALP 598
K+ I + S
Sbjct: 348 KIEDMILPKKSVSKVKQTQLLTTEGNY 374
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 28.4 bits (64), Expect = 8.5
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
+V I E E++ L P +++ T GA P+ + ++C E+
Sbjct: 134 DVRTISKPWGEVFSLE----ELRTALETHR-PAILALVHAETSTGARQPLEGVGELCREF 188
Query: 398 D---MADSVT 404
+ D+VT
Sbjct: 189 GTLLLVDTVT 198
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 28.0 bits (63), Expect = 9.3
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
+V I+ E + R + P + T G + G P+ + IC ++
Sbjct: 118 DVRTIEGPPDRPFSLE----TLARAIELHQ-PKCLFLTHGDSSSGLLQPLEGVGQICHQH 172
Query: 398 D---MADSVT 404
D + D+V
Sbjct: 173 DCLLIVDAVA 182
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 28.0 bits (63), Expect = 9.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 271 GFQGGDGIFCPGGSMANGYAI-SCARHHAFPQIKTQGLA 308
GG G+ G + YA+ H IK Q +A
Sbjct: 249 ALIGGPGL-VAGANFGRDYAVFEPGSRHVGLDIKGQNVA 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,816,606
Number of extensions: 598973
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 61
Length of query: 629
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 530
Effective length of database: 3,937,614
Effective search space: 2086935420
Effective search space used: 2086935420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)