RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1785
(629 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 271 bits (693), Expect = 1e-84
Identities = 94/481 (19%), Positives = 176/481 (36%), Gaps = 42/481 (8%)
Query: 165 FVNQLFSSKVNEWVNPEELEKKLELGFNAGPSSHAKLIDLMKTVIQYSVKT-GHPYFVNQ 223
++ + +V V P L + P + ++ ++ +I V PYF
Sbjct: 20 YLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAY 79
Query: 224 LFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGG-------- 275
++ ++ L A+ +++ SP + +E ++ + ++
Sbjct: 80 FPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGE 139
Query: 276 -DGIFCPGGSMANGYAISCARHHAFPQIKTQGL-----ASCPRLVLYTSEDAHYSIKKLA 329
G+ S A A+ AR +++ A +LV Y S+ AH S+++
Sbjct: 140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAG 199
Query: 330 AFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPA 389
G+ + I +D + M +L+ ++R A G +PF V AT GTT +FD +
Sbjct: 200 LIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLE 256
Query: 390 IADICAEYDMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEV-VADSVTWNPHKLLTAPQQ 448
+ IC E D+ H + R+ + V ADS +NPHK L
Sbjct: 257 VGPICHEEDI------WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310
Query: 449 CSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKG 508
CS + ++ LT YL + D + GR+ LK WF+++ G
Sbjct: 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG 370
Query: 509 TDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNE 568
GL+A+I K + F + P F++ E + F NE
Sbjct: 371 VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVCFRLKGSD--------GLNE 421
Query: 569 LLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 628
+ ER+ + + + + R + + ++ + + I L +
Sbjct: 422 -------ALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEHIRGLAAE 473
Query: 629 L 629
L
Sbjct: 474 L 474
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 151 bits (383), Expect = 1e-40
Identities = 49/404 (12%), Positives = 113/404 (27%), Gaps = 45/404 (11%)
Query: 234 VGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGD-----GIFCPGGSMANG 288
V + + ++N + E P + ++ + + + G G S A
Sbjct: 70 VHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACM 129
Query: 289 YAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARG 348
+ +++ G K A + + + + +
Sbjct: 130 LGGMAMKWRWRKRMEAAGK--PTDKPNLVCGPVQICWHKFARYWDVELREIPM--RPGQL 185
Query: 349 RMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH 408
M P+ + V T G T G ++ + D ++ + + H
Sbjct: 186 FMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMH 239
Query: 409 --KLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSA 466
V S++ + HK AP C + R + L +
Sbjct: 240 IDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVF 299
Query: 467 SASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWKAKGTDGLEAHIDKSFDNAKY 525
+ YL G I R V+ ++ + G +G + S+ A Y
Sbjct: 300 NVDYL---------GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAY 350
Query: 526 FTDKIRHRPGFKLVLD---EPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMM 582
D+I ++ + + + F G L+ ++ ER+
Sbjct: 351 LADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYT--------LYDLS----ERLR 398
Query: 583 KSGSMMITYQ--PIHALPNFFRLVLQNSALDHSDMDYFIDEIER 624
G + + R++ + + + +++ +
Sbjct: 399 LRGWQVPAFTLGGEATDIVVMRIMCRRG-FEMDFAELLLEDYKA 441
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 108 bits (271), Expect = 7e-26
Identities = 45/422 (10%), Positives = 107/422 (25%), Gaps = 57/422 (13%)
Query: 218 PYFVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQG-GD 276
+ L + + G + ++ S + + + ++ + + G
Sbjct: 55 GRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVAS 114
Query: 277 GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336
P + + H P+ K + S K G
Sbjct: 115 CFVVPMATGMSLTLCFLTLRHKRPKAK----------YIIWPRIDQKSCFKSMVTAGFEP 164
Query: 337 DNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAE 396
+ + R +++ +IQ E + +T+ D + +A ICA
Sbjct: 165 VVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELAVICAN 222
Query: 397 YDM---ADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFL 453
YD+ ++ Q + R D+ + K P ++
Sbjct: 223 YDIPHVVNNAYGLQSSKCMHLIQQGARVGR--------IDAFVQSLDKNFMVPVGGAIIA 274
Query: 454 TRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLE 513
++ + + + L + G G
Sbjct: 275 GFNEPFIQDISKM---------------------YPGRASASPSLDVLITLLSLGCSGYR 313
Query: 514 AHIDKSFDNAKYFTDKIRHRPGFK--LVLDEPECTNISFWYIPPSLRGKE-DQADFNELL 570
+ + + Y + +++ +L P + + +L
Sbjct: 314 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSML 373
Query: 571 HK------VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHS--DMDYFIDEI 622
A + SG + HA + +A+ D+D FI +
Sbjct: 374 FTRQVSGARAVPLGNVQTVSGHTFRGFM-SHADNYPCAYLNAAAAIGMKMQDVDLFIKRL 432
Query: 623 ER 624
++
Sbjct: 433 DK 434
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 108 bits (269), Expect = 9e-26
Identities = 52/381 (13%), Positives = 109/381 (28%), Gaps = 61/381 (16%)
Query: 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCP 311
+ + + +L +G M+ +S AR
Sbjct: 108 ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK------------YG 155
Query: 312 RLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFM 371
V+ +H S K +F G+ V + R + E + I++ + G P
Sbjct: 156 SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP-C 214
Query: 372 VSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQ-QCSVFLTRRNYVIEV 430
V +T D I IA IC YD+ PH + A Q + +L + +
Sbjct: 215 VLSTLTFFPPRNSDDIVEIAKICENYDI-------PHIINGAYAIQNNYYLEKLKKAFKY 267
Query: 431 VADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 490
D+V + K L P + + + E + +
Sbjct: 268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS---------------------YPG 306
Query: 491 CGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTD---KIRHRPGFKLVLDEPECTN 547
V+ + G+ + ++ K + + + G K LD
Sbjct: 307 RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGK-FLDVESPIA 365
Query: 548 ISFWYIPPSLRGKEDQADFNELLHK---VAPKIKERMMKSGSMMITYQPIHALPNFFRLV 604
D + L+ P+ ++ G+ + + ++
Sbjct: 366 SCISV-------NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHD-----YIVM 413
Query: 605 LQNSALDHSDMDYFIDEIERL 625
+ D+ + ++E++
Sbjct: 414 NAAIGVRTEDIVNSVSKLEKI 434
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 50.3 bits (119), Expect = 5e-07
Identities = 46/405 (11%), Positives = 94/405 (23%), Gaps = 40/405 (9%)
Query: 236 QWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCAR 295
A ++ S + + E V + I G+Q I G A I
Sbjct: 59 MQAAMMRGDEAFSG--SRSYYALAESV----KNIFGYQ--YTIPTHQGRGAEQIYIPVLI 110
Query: 296 HHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDA--RGRMLPE 353
+ + +S + + +G E
Sbjct: 111 KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLE 170
Query: 354 SLRGEIQRTLAEGAVPFMVSAT--SGTTVLGAFDPIPAIADICAEYD---MADSV-TWNP 407
L I+ + + T S + + A+ I +YD + DS
Sbjct: 171 GLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAEN 230
Query: 408 HKLLTAPQQCSVFLTRRNYVIEVV--ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHS 465
+ + T E AD + + K P + +
Sbjct: 231 AYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDS-------- 282
Query: 466 ASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKY 525
++ + + + + ++ D L I +
Sbjct: 283 --FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340
Query: 526 FTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKIKERMMKSG 585
+ + QA EL R ++ G
Sbjct: 341 LEEIGVVCQQAGGHAA---FVDAGKLLPHIPADQFPAQALACELYKVAG----IRAVEIG 393
Query: 586 SMMITYQPIH-----ALPNFFRLVLQNSALDHSDMDYFIDEIERL 625
S ++ P RL + + + MD+ I+ + +
Sbjct: 394 SFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 49.8 bits (118), Expect = 7e-07
Identities = 43/361 (11%), Positives = 87/361 (24%), Gaps = 40/361 (11%)
Query: 278 IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337
+ G A IK + T+
Sbjct: 94 VPTHQGRGAENLLSQL-------AIKPGQYVAGNMYF-TTTRFHQEKNGATFVDIVRDEA 145
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAE--GAVPFMVSATSGTTVLGAFDPIPAIADICA 395
+ + +G + L I+ AE + V+ + + A+ ++ +
Sbjct: 146 HDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAS 205
Query: 396 EY------DMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQC 449
Y D V +V + + + AD T + K
Sbjct: 206 TYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG- 264
Query: 450 SVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGT 509
+ +F K Y+ + + + +A
Sbjct: 265 GFLCMNDE------------EMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY 312
Query: 510 DGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNEL 569
+ +E + +Y DK+R + + P L + A L
Sbjct: 313 EYIEHRVK----QVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPA--QSL 366
Query: 570 LHKVAPKIKERMMKSGSMMITYQP-----IHALPNFFRLVLQNSALDHSDMDYFIDEIER 624
+ + R M+ G + RL + ++ MD D I +
Sbjct: 367 AASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426
Query: 625 L 625
L
Sbjct: 427 L 427
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 39.9 bits (92), Expect = 7e-04
Identities = 46/371 (12%), Positives = 100/371 (26%), Gaps = 49/371 (13%)
Query: 277 GIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGS 336
I G A + + + + AH + A +
Sbjct: 93 IIPAHQGRGAENILFPVLLKY-KQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 337 DNVYLIKTDA-RGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDP--IPAIADI 393
D +G + L+ I + A+ V + + T + + + +I
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEI 211
Query: 394 CAEYD---MADSVTWNPHKLLTAPQQCSVF-LTRRNYVIEV--VADSVTWNPHKLLTAPQ 447
++ + DS + + + T + + ++ AD++T + K
Sbjct: 212 AKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI 271
Query: 448 QCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAK 507
V + ++ +F + + + + + +
Sbjct: 272 GGLVAIRDNE------------EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT 319
Query: 508 GTDGLEAHIDKSFDNAKYFTDK----IRHRPGFKLVLDE----PECTNISFWYIPPSLRG 559
+ L I + + G + +D P+ F
Sbjct: 320 EEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPA------- 372
Query: 560 KEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIH-----ALPNFFRLVLQNSALDHSD 614
QA N L + R ++ GS ++ P A F RL + +
Sbjct: 373 ---QAVINALYLESGV----RAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDH 425
Query: 615 MDYFIDEIERL 625
MDY D + L
Sbjct: 426 MDYIADALIGL 436
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 30.4 bits (67), Expect = 0.76
Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 1/249 (0%)
Query: 252 SPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCP 311
+ + +R +G I G++A + +
Sbjct: 28 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSE 87
Query: 312 RLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFM 371
R + +A +++L G + K G +L S
Sbjct: 88 RFY-EIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAF 146
Query: 372 VSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVV 431
V + ++ E D+ K L P + +
Sbjct: 147 KEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLK 206
Query: 432 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 491
+ + L A ++ T +++ + L + ++ K
Sbjct: 207 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGV 266
Query: 492 GRKPDVLKF 500
G + +
Sbjct: 267 GEEGGLRPV 275
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 29.5 bits (65), Expect = 1.2
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 16/166 (9%)
Query: 243 NPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGDGIFCPGGSMANGYAISCARHHAFPQI 302
NP+ ++ + Q+ +VG + +F G + ++ AI A +
Sbjct: 34 NPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQK-- 91
Query: 303 KTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRT 362
+ TS+ H ++ V + G + + L ++
Sbjct: 92 --------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 143
Query: 363 LAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEYDMADSVTWNPH 408
+VS +G I AI ++C + V
Sbjct: 144 TI------LVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQS 183
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 28.7 bits (64), Expect = 1.4
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 553 IPPSLRGKEDQADFNELLHKVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDH 612
+P LR + Q EL+ +A K + + I + ++
Sbjct: 94 VPLPLRQQNLQILIPELIGYLA-KQSVFEPGNIAQWIARNLMSE----------HAQWSM 142
Query: 613 SDMDYFIDEIERL 625
+ + ++ERL
Sbjct: 143 AQAITLLADVERL 155
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 29.1 bits (63), Expect = 1.4
Identities = 22/232 (9%), Positives = 57/232 (24%), Gaps = 31/232 (13%)
Query: 399 MADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQS 458
+ S T T + + + + + + + D + R
Sbjct: 135 VYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTD 194
Query: 459 VLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA---KGTDGLEAH 515
+ + + + + +H+ R + K W + D L
Sbjct: 195 MFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFE 254
Query: 516 IDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAP 575
+ + G +L P +N F + N ++ ++
Sbjct: 255 LGAHSNKMAAILKAGLEACGIRLAW--PSASNQLFPILE------------NTMIAELNN 300
Query: 576 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHS--DMDYFIDEIERL 625
++ RL + + F++ ++RL
Sbjct: 301 DFDMYTVEPLKDG---------TCIMRLCT---SWATEEKECHRFVEVLKRL 340
Score = 28.4 bits (61), Expect = 2.9
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 218 PY-FVNQLFSSVDPYGLVGQWLADALNPSVYTYEVSPVFSLMEEHVLAQMRTIVGFQGGD 276
PY FVN + P + +A Y + + ++ D
Sbjct: 1 PYSFVNDYSVGMHP--KILDLMARDNMTQHAGYGQDSHCAKAAR----LIGELLERPDAD 54
Query: 277 GIFCPGGSMANGYAISCARHH 297
F GG+ N A S A
Sbjct: 55 VHFISGGTQTNLIACSLALRP 75
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 28.6 bits (63), Expect = 1.9
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 30 YNSSDDETLEAGSKFDHFR----ASGAGYRFTSGGLAGELQVPAREGKPAGKTSGVCSYE 85
+ S+D++ AG D+ +G + T GL L + + K G+ E
Sbjct: 53 FYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTE 112
Query: 86 SLPEQVRHERFFR----DAFEVLLRDGVFKATSRGNKVNEWVNPEELEKKLELGF 136
L EQV E F + A V+L + +S +N W + L +LE+ F
Sbjct: 113 PLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINF 167
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 27.8 bits (61), Expect = 2.4
Identities = 9/81 (11%), Positives = 17/81 (20%), Gaps = 2/81 (2%)
Query: 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKI 530
L + K + + K + F + F N K F +
Sbjct: 50 LPGQLKQFS-MFLGKFSWFAGE-KLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRF 107
Query: 531 RHRPGFKLVLDEPECTNISFW 551
L + +
Sbjct: 108 EALEKIAAYLQSDQFCKMPIN 128
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica
[TaxId: 6192]}
Length = 136
Score = 27.3 bits (60), Expect = 2.9
Identities = 12/67 (17%), Positives = 17/67 (25%)
Query: 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE 544
G G + F LE H F N + F +I P K ++
Sbjct: 57 GKNPYLRGTSVSHVDFMVYEALDAIRYLEPHCLDHFPNLQQFMSRIEALPSIKAYMESNR 116
Query: 545 CTNISFW 551
Sbjct: 117 FIKWPLN 123
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus
[TaxId: 6282]}
Length = 131
Score = 26.9 bits (59), Expect = 3.8
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 481 KYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVL 540
+G I G K + + L+ H F K F +++ RP K
Sbjct: 57 TRGNGRNLI-LGDKISYADYALFEELDVHQILDPHCLDKFPLLKVFHQRMKDRPKLKEYC 115
Query: 541 DEPECTNISF 550
++ + +
Sbjct: 116 EKRDAAKVPV 125
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 27.9 bits (61), Expect = 4.0
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 39/137 (28%)
Query: 497 VLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPS 556
L A G +GL KS + A + PG + +P F
Sbjct: 327 ALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP------F------ 374
Query: 557 LRGKEDQADFNELLHKV---APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL--- 610
FNE + ++ + + G H R +N AL
Sbjct: 375 ---------FNEFALALPKDPEAVRRALAERG--------FHGATPVPREYGENLALFAA 417
Query: 611 ----DHSDMDYFIDEIE 623
+ D+ + ++
Sbjct: 418 TELHEEEDLLALREALK 434
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 27.6 bits (61), Expect = 4.8
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 316 YTSEDAHYSIKKLAAFEGLGSDNVYLIKTDARGRMLPESLRGEIQRTLAE 365
+ ED + K LG + + D G + E+ + E
Sbjct: 88 WNKEDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQKQAELLNYIDE 137
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 133
Score = 26.5 bits (58), Expect = 5.3
Identities = 9/67 (13%), Positives = 16/67 (23%)
Query: 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE 544
G + G K + F E +F N K F + +
Sbjct: 58 GKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSR 117
Query: 545 CTNISFW 551
+ +
Sbjct: 118 YLSTPIF 124
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 27.5 bits (59), Expect = 5.4
Identities = 34/349 (9%), Positives = 76/349 (21%), Gaps = 65/349 (18%)
Query: 278 IFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLGSD 337
P G+ AN +S ++ + D
Sbjct: 58 FLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLD 117
Query: 338 NVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICAEY 397
V L + + + ++ + + D I AI D+C
Sbjct: 118 IVRLRERTREKVGDVHTTQ----------PACVSITQATEVGSIYTLDEIEAIGDVCKSS 167
Query: 398 DMADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFLTRHQ 457
+ + + CS A +
Sbjct: 168 SLGLHMDGSRFANALVSLGCSPAEMT------WKAGVDALSFGATKNGVLAAEAI----- 216
Query: 458 SVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHID 517
+ T+ K + D +
Sbjct: 217 --------------VLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNAR 262
Query: 518 KSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKVAPKI 577
K+ A+ + G +++ NI F + +
Sbjct: 263 KANAAAQRLAQGLEGLGGVEVL--GGTEANILFCRLD--------------------SAM 300
Query: 578 KERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHS--DMDYFIDEIER 624
+ ++K+G + PN R V + + D+D+ ++++
Sbjct: 301 IDALLKAG---FGFYHDRWGPNVVRFVT---SFATTAEDVDHLLNQVRL 343
>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum
[TaxId: 6182]}
Length = 140
Score = 26.5 bits (58), Expect = 5.4
Identities = 8/63 (12%), Positives = 13/63 (20%)
Query: 485 GDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKIRHRPGFKLVLDEPE 544
K G F ++ +F F +I P L +
Sbjct: 57 CHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSK 116
Query: 545 CTN 547
Sbjct: 117 YIA 119
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.5 bits (59), Expect = 6.1
Identities = 43/353 (12%), Positives = 99/353 (28%), Gaps = 60/353 (16%)
Query: 276 DGIFCPGGSMANGYAISCARHHAFPQIKTQGLASCPRLVLYTSEDAHYSIKKLAAFEGLG 335
G A + A +C +E A +I
Sbjct: 64 VARVTNGAREAKFAVMHS---LAKKDAWVVMDENCHYSSYVAAERAGLNIA--------- 111
Query: 336 SDNVYLIKTDARGRMLPESLRGEIQRTLAEGAVPFMVSATSGTTVLGAFDPIPAIADICA 395
+ + PE+ I+ T G + T G + IA +C+
Sbjct: 112 ---LVPKTDYPDYAITPENFAQTIEETKKRGE-VVLALITYPDGNYGNLPDVKKIAKVCS 167
Query: 396 EYD--MADSVTWNPHKLLTAPQQCSVFLTRRNYVIEVVADSVTWNPHKLLTAPQQCSVFL 453
EYD + + + ++ + ++ + + HK + A V
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSLKEIGAD-------------FIVGSGHKSMAASGPIGVMG 214
Query: 454 TRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLE 513
+ + + KY + + + M
Sbjct: 215 MKEE-------------WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERI 261
Query: 514 AHIDKSFDNAKYFTDKIRHRPGFKLVLDEPECTNISFWYIPPSLRGKEDQADFNELLHKV 573
D+ + A+ F ++ + G K + D P ++ F++ +L+++
Sbjct: 262 KRWDEEVEKARRFAAEME-KLGIKQLGDNPHNHDLMFFHAE--------------VLYEI 306
Query: 574 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNS-ALDHSDMDYFIDEIERL 625
+ K K + + + P R ++ L ++DY ++ + +
Sbjct: 307 SKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEI 359
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 107
Score = 26.0 bits (57), Expect = 6.1
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 138 AGPSSHGKLIDLMKTVIQYSVKTGHP--YFVNQLFSSKVNEWVNPEELEKKLELGFNAGP 195
AG SS KL++ I + +K+ + Y + +F V+P K + + AG
Sbjct: 13 AGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGF-----VDPSG-SKDVVITRTAGA 66
Query: 196 SSHAKLIDLMKTVIQYSVKTGHPYFVNQLFSSVDPYGLV 234
KL V+ ++ F +V P G V
Sbjct: 67 PKEDKL------VVHFASAPADATDAQAAFVAVAPAGTV 99
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 26.1 bits (57), Expect = 7.2
Identities = 6/81 (7%), Positives = 14/81 (17%), Gaps = 2/81 (2%)
Query: 471 LFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMWKAKGTDGLEAHIDKSFDNAKYFTDKI 530
L K + ++ K + F + N F +
Sbjct: 46 LPGKLRQLS-RFLGSRSWFVGD-KLTFVDFLAYDVLDQQRMFVPDCPELQGNLSQFLQRF 103
Query: 531 RHRPGFKLVLDEPECTNISFW 551
+ +
Sbjct: 104 EALEKISAYMRSGRFMKAPIF 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,394,908
Number of extensions: 113757
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 26
Length of query: 629
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 538
Effective length of database: 1,158,166
Effective search space: 623093308
Effective search space used: 623093308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)