Query psy17851
Match_columns 60
No_of_seqs 133 out of 1004
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 99.7 5.8E-18 1.3E-22 122.9 6.1 58 1-58 402-459 (821)
2 cd01381 MYSc_type_VII Myosin m 99.7 8.7E-18 1.9E-22 119.9 6.2 56 1-56 301-356 (671)
3 cd01385 MYSc_type_IX Myosin mo 99.7 8.4E-18 1.8E-22 120.3 6.1 58 1-58 313-370 (692)
4 COG5022 Myosin heavy chain [Cy 99.7 4.8E-18 1E-22 127.3 4.8 58 1-58 368-425 (1463)
5 cd01379 MYSc_type_III Myosin m 99.7 9.8E-18 2.1E-22 119.4 6.0 57 1-57 308-364 (653)
6 cd01383 MYSc_type_VIII Myosin 99.7 1E-17 2.2E-22 119.7 5.9 57 1-57 304-360 (677)
7 cd01380 MYSc_type_V Myosin mot 99.7 1E-17 2.3E-22 119.8 5.9 56 1-56 305-360 (691)
8 cd01377 MYSc_type_II Myosin mo 99.7 1.4E-17 3E-22 119.2 6.4 57 1-57 314-370 (693)
9 cd01387 MYSc_type_XV Myosin mo 99.7 1.6E-17 3.5E-22 118.7 6.2 58 1-58 302-359 (677)
10 cd01384 MYSc_type_XI Myosin mo 99.7 2.2E-17 4.8E-22 117.9 6.3 57 1-57 307-363 (674)
11 KOG0164|consensus 99.7 6.1E-18 1.3E-22 121.7 2.1 56 1-56 310-365 (1001)
12 cd00124 MYSc Myosin motor doma 99.7 5.3E-17 1.2E-21 115.8 6.2 56 1-56 302-357 (679)
13 cd01378 MYSc_type_I Myosin mot 99.7 6.8E-17 1.5E-21 115.4 6.1 56 1-56 301-360 (674)
14 PF00063 Myosin_head: Myosin h 99.7 4.3E-17 9.3E-22 115.8 4.8 57 1-57 303-359 (689)
15 smart00242 MYSc Myosin. Large 99.7 9.3E-17 2E-21 114.6 6.1 57 1-57 309-365 (677)
16 cd01382 MYSc_type_VI Myosin mo 99.6 2.3E-16 5.1E-21 113.3 6.0 56 1-56 333-393 (717)
17 KOG0162|consensus 99.6 9.9E-16 2.1E-20 110.8 3.8 54 2-55 319-376 (1106)
18 cd01386 MYSc_type_XVIII Myosin 99.5 1.7E-14 3.8E-19 104.4 5.8 58 1-58 300-370 (767)
19 KOG0163|consensus 99.4 1.3E-13 2.7E-18 100.5 5.3 47 13-59 404-450 (1259)
20 KOG0160|consensus 99.4 2.7E-13 5.8E-18 99.1 3.7 56 2-57 308-363 (862)
21 KOG4229|consensus 99.2 4.2E-12 9.1E-17 94.5 2.2 58 1-58 365-422 (1062)
22 KOG0161|consensus 99.2 7.6E-12 1.6E-16 96.8 3.5 56 1-56 388-443 (1930)
23 PF02376 CUT: CUT domain; Int 77.1 2.4 5.3E-05 23.6 2.0 15 33-47 60-74 (87)
24 PF11758 Bacteriocin_IIi: Aure 72.7 2.8 6.2E-05 21.4 1.4 13 40-52 36-48 (51)
25 PF11310 DUF3113: Protein of u 62.7 18 0.0004 18.9 3.3 35 6-40 7-41 (60)
26 PF05600 DUF773: Protein of un 58.9 5.9 0.00013 28.5 1.4 11 38-48 13-23 (507)
27 COG3324 Predicted enzyme relat 58.5 5.2 0.00011 23.9 0.9 17 33-49 22-38 (127)
28 PF13105 DUF3959: Protein of u 52.1 14 0.00031 23.9 2.1 18 32-49 36-53 (239)
29 PF15026 FAM74: FAM74 protein 49.8 52 0.0011 19.3 4.3 26 30-55 86-111 (127)
30 PF14730 DUF4468: Domain of un 48.8 21 0.00046 19.5 2.3 19 34-52 12-30 (91)
31 PF08998 Epsilon_antitox: Bact 48.5 46 0.00099 18.8 3.6 20 28-47 11-30 (89)
32 PF00349 Hexokinase_1: Hexokin 48.3 11 0.00024 23.8 1.3 17 39-55 107-123 (206)
33 KOG4539|consensus 45.8 16 0.00035 24.3 1.7 14 39-52 55-68 (274)
34 PRK15362 pathogenicity island 43.7 18 0.00039 26.1 1.8 13 36-48 150-162 (473)
35 PF10585 UBA_e1_thiolCys: Ubiq 42.9 21 0.00045 17.4 1.5 12 32-43 34-45 (45)
36 PF11774 Lsr2: Lsr2 ; InterPr 42.2 68 0.0015 18.5 4.6 28 10-37 24-51 (110)
37 PF00380 Ribosomal_S9: Ribosom 42.1 34 0.00074 20.1 2.6 18 22-39 63-80 (121)
38 PF09715 Plasmod_dom_1: Plasmo 41.8 20 0.00043 19.3 1.4 26 25-50 40-65 (67)
39 PF00605 IRF: Interferon regul 41.1 22 0.00048 20.6 1.6 16 40-55 3-18 (109)
40 TIGR01519 plasmod_dom_1 Plasmo 41.0 21 0.00046 19.3 1.5 12 40-51 55-66 (70)
41 CHL00079 rps9 ribosomal protei 36.2 38 0.00083 20.2 2.2 18 22-39 72-89 (130)
42 COG0103 RpsI Ribosomal protein 36.1 39 0.00084 20.4 2.2 17 23-39 73-89 (130)
43 PF11314 DUF3117: Protein of u 36.1 64 0.0014 16.4 3.4 23 13-35 27-49 (51)
44 PRK01917 cation-binding hemery 36.0 62 0.0014 18.9 3.1 21 31-51 96-116 (139)
45 COG5004 P2-like prophage tail 35.2 63 0.0014 17.4 2.7 21 28-49 11-31 (70)
46 PRK13916 plasmid segregation p 34.8 26 0.00056 19.9 1.2 15 33-47 12-26 (97)
47 COG3033 TnaA Tryptophanase [Am 33.7 46 0.00099 23.9 2.5 24 29-52 312-336 (471)
48 COG4803 Predicted membrane pro 33.7 59 0.0013 20.4 2.8 25 12-36 139-163 (170)
49 PF14837 INTS5_N: Integrator c 33.7 15 0.00033 23.8 0.2 18 37-54 178-195 (213)
50 PLN00210 40S ribosomal protein 33.5 51 0.0011 20.0 2.5 17 23-39 73-89 (141)
51 PRK00132 rpsI 30S ribosomal pr 33.2 54 0.0012 19.6 2.5 17 23-39 73-89 (130)
52 PF11165 DUF2949: Protein of u 33.1 31 0.00067 18.0 1.3 8 38-45 49-56 (58)
53 PF06897 DUF1269: Protein of u 32.5 62 0.0013 18.4 2.6 24 12-35 78-101 (102)
54 PF03165 MH1: MH1 domain; Int 32.4 21 0.00046 20.4 0.7 15 30-44 52-66 (103)
55 PF02184 HAT: HAT (Half-A-TPR) 32.4 36 0.00078 15.7 1.3 9 34-42 6-14 (32)
56 smart00337 BCL BCL (B-Cell lym 31.3 98 0.0021 17.1 3.4 24 24-47 73-96 (100)
57 cd00522 Hemerythrin Hemerythri 31.3 1E+02 0.0022 17.2 4.4 23 29-51 82-104 (113)
58 PF07541 EIF_2_alpha: Eukaryot 31.0 88 0.0019 17.9 3.1 34 4-37 53-86 (114)
59 PTZ00086 40S ribosomal protein 30.7 62 0.0013 19.8 2.5 17 23-39 79-95 (147)
60 PF06481 COX_ARM: COX Aromatic 30.5 40 0.00086 16.4 1.4 10 40-49 33-42 (47)
61 PRK00474 rps9p 30S ribosomal p 30.4 54 0.0012 19.7 2.2 17 23-39 73-89 (134)
62 KOG0136|consensus 30.3 28 0.0006 26.3 1.0 12 36-47 632-643 (670)
63 TIGR03627 arch_S9P archaeal ri 30.1 55 0.0012 19.5 2.2 17 23-39 69-85 (130)
64 PRK00078 Maf-like protein; Rev 29.9 87 0.0019 19.6 3.1 25 10-34 74-98 (192)
65 cd01816 Raf_RBD Ubiquitin doma 29.5 43 0.00094 18.3 1.5 12 27-38 20-31 (74)
66 PRK04694 Maf-like protein; Rev 28.5 94 0.002 19.4 3.1 25 10-34 74-98 (190)
67 KOG3749|consensus 28.3 41 0.00089 24.9 1.6 13 39-51 552-564 (640)
68 PF14409 Herpeto_peptide: Ribo 28.1 29 0.00063 18.1 0.7 11 42-52 3-13 (58)
69 PRK00148 Maf-like protein; Rev 28.0 99 0.0022 19.4 3.2 25 10-34 71-95 (194)
70 PF01756 ACOX: Acyl-CoA oxidas 27.8 44 0.00095 20.4 1.5 12 36-47 153-164 (187)
71 PF12614 RRF_GI: Ribosome recy 27.5 1.5E+02 0.0032 17.9 4.1 21 38-58 64-84 (128)
72 cd00103 IRF Interferon Regulat 27.2 40 0.00087 19.3 1.2 16 40-55 3-18 (107)
73 PF04888 SseC: Secretion syste 27.1 68 0.0015 21.0 2.4 13 36-48 56-68 (306)
74 TIGR00172 maf MAF protein. Thi 27.0 1.1E+02 0.0024 19.0 3.2 25 10-34 73-97 (183)
75 PF00042 Globin: Globin plant 26.6 82 0.0018 16.8 2.4 15 29-43 15-29 (110)
76 PRK01839 Maf-like protein; Rev 25.9 1.2E+02 0.0025 19.4 3.2 25 10-34 91-115 (209)
77 cd00353 Ribosomal_S15p_S13e Ri 25.7 1.2E+02 0.0026 16.3 3.6 30 21-50 48-80 (80)
78 PRK00648 Maf-like protein; Rev 25.6 1.1E+02 0.0025 19.1 3.1 25 10-34 75-99 (191)
79 PRK14361 Maf-like protein; Pro 24.8 1.2E+02 0.0027 18.9 3.2 25 10-34 68-92 (187)
80 PRK14364 Maf-like protein; Pro 24.8 1.2E+02 0.0027 18.8 3.2 25 10-34 67-91 (181)
81 smart00807 AKAP_110 A-kinase a 24.8 76 0.0017 24.2 2.5 24 21-44 370-393 (851)
82 cd04917 ACT_AKiii-LysC-EC_2 AC 24.8 86 0.0019 15.4 2.1 14 30-43 51-64 (64)
83 cd00555 Maf Nucleotide binding 24.5 1.4E+02 0.003 18.5 3.3 25 10-34 70-94 (180)
84 PRK04056 Maf-like protein; Rev 24.5 1.2E+02 0.0027 18.8 3.1 25 10-34 71-95 (180)
85 PRK14366 Maf-like protein; Pro 24.2 1.3E+02 0.0028 19.0 3.2 25 10-34 76-100 (195)
86 PRK14368 Maf-like protein; Pro 24.2 1.3E+02 0.0028 18.9 3.2 25 10-34 75-99 (193)
87 PRK10698 phage shock protein P 24.1 51 0.0011 21.1 1.4 23 36-58 2-24 (222)
88 PLN02298 hydrolase, alpha/beta 24.0 1.3E+02 0.0028 19.4 3.3 29 31-59 300-328 (330)
89 PRK00032 Maf-like protein; Rev 23.4 1.3E+02 0.0029 18.8 3.1 25 10-34 73-97 (190)
90 PRK02478 Maf-like protein; Rev 23.2 1.4E+02 0.0031 18.8 3.3 25 10-34 79-103 (199)
91 PRK00884 Maf-like protein; Rev 23.2 1.4E+02 0.003 18.8 3.2 24 10-33 72-95 (194)
92 PF02545 Maf: Maf-like protein 23.1 1.3E+02 0.0029 18.8 3.1 24 10-33 74-97 (195)
93 COG0424 Maf Nucleotide-binding 22.8 1.4E+02 0.0031 19.0 3.2 25 9-33 73-97 (193)
94 PF00392 GntR: Bacterial regul 22.4 1.2E+02 0.0026 15.0 2.8 16 37-52 1-16 (64)
95 PRK00234 Maf-like protein; Rev 22.1 1.2E+02 0.0026 19.0 2.8 25 10-34 72-96 (192)
96 PRK14898 DNA-directed RNA poly 22.1 1.3E+02 0.0029 23.2 3.4 36 19-54 13-50 (858)
97 PF11295 DUF3096: Protein of u 21.8 1E+02 0.0022 14.9 1.8 13 35-47 11-23 (39)
98 PRK04425 Maf-like protein; Rev 21.7 1.5E+02 0.0033 18.7 3.2 24 10-33 75-98 (196)
99 PF10624 TraS: Plasmid conjuga 21.7 1.7E+02 0.0036 18.1 3.2 19 32-50 32-50 (164)
100 PF01712 dNK: Deoxynucleoside 21.7 80 0.0017 18.5 1.8 21 31-51 46-66 (146)
101 PRK02141 Maf-like protein; Rev 21.7 1.6E+02 0.0034 18.8 3.2 25 10-34 82-106 (207)
102 PRK14362 Maf-like protein; Pro 21.4 1.3E+02 0.0028 19.2 2.8 25 10-34 83-107 (207)
103 cd01040 globin Globins are hem 21.3 1E+02 0.0023 16.9 2.2 15 29-43 18-32 (140)
104 smart00348 IRF interferon regu 21.2 68 0.0015 18.4 1.4 16 40-55 1-16 (107)
105 cd00018 AP2 DNA-binding domain 21.2 1.2E+02 0.0027 14.9 2.3 23 17-39 29-51 (61)
106 PRK01441 Maf-like protein; Rev 21.1 1.5E+02 0.0032 18.8 3.0 25 10-34 82-106 (207)
107 PF08708 PriCT_1: Primase C te 21.0 1.1E+02 0.0024 15.5 2.1 24 15-38 47-70 (71)
108 PRK01526 Maf-like protein; Rev 21.0 1.6E+02 0.0035 18.7 3.2 25 10-34 80-104 (205)
109 PF15128 T_cell_tran_alt: T-ce 21.0 1.5E+02 0.0033 16.7 2.7 21 25-49 19-39 (92)
110 PF10960 DUF2762: Protein of u 20.8 71 0.0015 17.2 1.3 19 31-49 8-26 (71)
111 PHA03073 late transcription fa 20.8 87 0.0019 19.3 1.8 15 27-41 80-94 (150)
112 TIGR02481 hemeryth_dom hemeryt 20.7 1.5E+02 0.0033 16.5 2.8 21 31-51 97-117 (126)
113 PF04796 RepA_C: Plasmid encod 20.7 1.7E+02 0.0036 18.0 3.1 29 19-51 121-150 (161)
114 PF03501 S10_plectin: Plectin/ 20.7 78 0.0017 18.1 1.5 9 35-43 7-15 (95)
115 PHA02518 ParA-like protein; Pr 20.6 1.2E+02 0.0026 18.0 2.5 17 34-50 194-210 (211)
116 PRK14367 Maf-like protein; Pro 20.3 1.7E+02 0.0037 18.5 3.2 25 10-34 79-103 (202)
117 COG5132 BUD31 Cell cycle contr 20.3 98 0.0021 18.7 1.9 15 29-47 66-80 (146)
118 cd04176 Rap2 Rap2 subgroup. T 20.1 71 0.0015 18.1 1.3 12 39-50 152-163 (163)
119 PLN02349 glycerol-3-phosphate 20.1 2.4E+02 0.0052 20.3 4.1 32 26-58 393-424 (426)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.73 E-value=5.8e-18 Score=122.91 Aligned_cols=58 Identities=21% Similarity=0.439 Sum_probs=54.3
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++|+++++.+|||.+.++++++||..+||||||+||+|||+|||.+||.+|.++++
T Consensus 402 L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 459 (821)
T PTZ00014 402 LKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGG 459 (821)
T ss_pred HHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4578999999999999999999999999999999999999999999999999987543
No 2
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.72 E-value=8.7e-18 Score=119.95 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=53.3
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++||++++.++||.+.+|++++||.++||||||+||+|||+|||.+||.++.++
T Consensus 301 L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~ 356 (671)
T cd01381 301 LMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKP 356 (671)
T ss_pred HhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46799999999999999999999999999999999999999999999999999765
No 3
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.72 E-value=8.4e-18 Score=120.33 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=54.3
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++|+++++.++||.+.+|++++||.+.||+|||+||+|||+|||.+||.++.++.+
T Consensus 313 L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~ 370 (692)
T cd01385 313 LMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDD 370 (692)
T ss_pred HHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4578999999999999999999999999999999999999999999999999987654
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.72 E-value=4.8e-18 Score=127.27 Aligned_cols=58 Identities=33% Similarity=0.581 Sum_probs=55.5
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++|+.|+|++|||++.+|++..||..+||||||+||++||+|||++||.+|+.+..
T Consensus 368 f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~ 425 (1463)
T COG5022 368 FVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA 425 (1463)
T ss_pred HHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 5689999999999999999999999999999999999999999999999999998765
No 5
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.72 E-value=9.8e-18 Score=119.45 Aligned_cols=57 Identities=30% Similarity=0.464 Sum_probs=53.9
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.++||.+.+|++++||.++||||||+||+|||+|||.+||.++.++.
T Consensus 308 L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~ 364 (653)
T cd01379 308 LQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDR 364 (653)
T ss_pred HHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999999999999999998754
No 6
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.72 E-value=1e-17 Score=119.74 Aligned_cols=57 Identities=30% Similarity=0.475 Sum_probs=53.9
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.++||.+.++++++||.++||+|||+||+|||+|||.+||.++.++.
T Consensus 304 L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~ 360 (677)
T cd01383 304 LMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGK 360 (677)
T ss_pred HHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999999999999999999999998754
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.72 E-value=1e-17 Score=119.81 Aligned_cols=56 Identities=36% Similarity=0.556 Sum_probs=53.5
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++|+++++.++||.+.++++++||.++||+|||+||+|||+|||.+||.++.++
T Consensus 305 L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~ 360 (691)
T cd01380 305 LRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTG 360 (691)
T ss_pred HHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 45789999999999999999999999999999999999999999999999999876
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.71 E-value=1.4e-17 Score=119.22 Aligned_cols=57 Identities=61% Similarity=0.976 Sum_probs=53.9
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.+++|.+.+|++++||.++||+|||+||++||+|||.+||.+|.++.
T Consensus 314 L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~ 370 (693)
T cd01377 314 LLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQ 370 (693)
T ss_pred HHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 457899999999999999999999999999999999999999999999999998763
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.71 E-value=1.6e-17 Score=118.68 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=54.1
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++||++.+.++||.+.+|++++||.++||+|||+||+|||+|||.+||.++.++.+
T Consensus 302 L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~ 359 (677)
T cd01387 302 LQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPTQD 359 (677)
T ss_pred HHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4578999999999999999999999999999999999999999999999999987543
No 10
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.70 E-value=2.2e-17 Score=117.94 Aligned_cols=57 Identities=30% Similarity=0.539 Sum_probs=53.7
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.+++|.+.++++++||.++||+|||+||+|||+|||.+||.++.++.
T Consensus 307 L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~ 363 (674)
T cd01384 307 LEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP 363 (674)
T ss_pred HHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999999999999999999999998753
No 11
>KOG0164|consensus
Probab=99.69 E-value=6.1e-18 Score=121.66 Aligned_cols=56 Identities=38% Similarity=0.714 Sum_probs=53.1
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
+.++|++|++.++||.+.+++++.||..+||||||++|+|||.|||.+||.+|...
T Consensus 310 l~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~ 365 (1001)
T KOG0164|consen 310 LERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVK 365 (1001)
T ss_pred HHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecc
Confidence 35799999999999999999999999999999999999999999999999999764
No 12
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.69 E-value=5.3e-17 Score=115.80 Aligned_cols=56 Identities=36% Similarity=0.567 Sum_probs=53.3
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++|+++++.++||.+.++++++||.+.||+|||+||+|||+|||.+||.+|.++
T Consensus 302 L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~ 357 (679)
T cd00124 302 LEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK 357 (679)
T ss_pred HHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999874
No 13
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.68 E-value=6.8e-17 Score=115.43 Aligned_cols=56 Identities=34% Similarity=0.618 Sum_probs=53.1
Q ss_pred CccccccceEEeCc----eEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~----e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++|+++++.++| |.+.+|++++||.+.||+|||+||+|||+|||.+||.+|.++
T Consensus 301 L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~ 360 (674)
T cd01378 301 LEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVK 360 (674)
T ss_pred HHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999998 999999999999999999999999999999999999999875
No 14
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.68 E-value=4.3e-17 Score=115.76 Aligned_cols=57 Identities=42% Similarity=0.619 Sum_probs=51.3
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.+++|.+.++++++||...||+|||+||++||+|||.+||.+|.++.
T Consensus 303 L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~ 359 (689)
T PF00063_consen 303 LEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSE 359 (689)
T ss_dssp HHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred HHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhcccccc
Confidence 457899999999999999999999999999999999999999999999999998865
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.67 E-value=9.3e-17 Score=114.64 Aligned_cols=57 Identities=44% Similarity=0.631 Sum_probs=53.8
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|+++++.++||.+.++++++||.+.||+|||+||+|||+|||.+||.+|.+++
T Consensus 309 L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~ 365 (677)
T smart00242 309 LEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD 365 (677)
T ss_pred HHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999999999999999999999998764
No 16
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.65 E-value=2.3e-16 Score=113.31 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=51.6
Q ss_pred CccccccceEE-----eCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIK-----VGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~-----~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++|+++.+. ++||.+.+|++++||.+.||+|||+||+|||+|||.+||.++...
T Consensus 333 L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~ 393 (717)
T cd01382 333 LRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE 393 (717)
T ss_pred HHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45789998887 789999999999999999999999999999999999999999754
No 17
>KOG0162|consensus
Probab=99.58 E-value=9.9e-16 Score=110.77 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=48.1
Q ss_pred ccccccceEEe----CceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17851 2 TKAFLKPRIKV----GRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55 (60)
Q Consensus 2 ~~aL~~~~i~~----~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~ 55 (60)
+++||.|.+.. +.|++..||+++||...||||||+||.|||||||++||.+|..
T Consensus 319 ~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~ 376 (1106)
T KOG0162|consen 319 EEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQA 376 (1106)
T ss_pred HHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777655 3499999999999999999999999999999999999999984
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.52 E-value=1.7e-14 Score=104.40 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=47.2
Q ss_pred CccccccceEEeCceE-------------EEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDF-------------VTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~-------------~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++|+++++..+++. +..+.++.||.++||||||+||+|||+|||.+||.+|.+++.
T Consensus 300 L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 370 (767)
T cd01386 300 LSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHH 370 (767)
T ss_pred HHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3567777776665432 334678899999999999999999999999999999987654
No 19
>KOG0163|consensus
Probab=99.45 E-value=1.3e-13 Score=100.46 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=43.1
Q ss_pred CceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy17851 13 GRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMCA 59 (60)
Q Consensus 13 ~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~ 59 (60)
.|-.|.+|+.+.||...||||||++|++||+|||.+||+++......
T Consensus 404 kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~St 450 (1259)
T KOG0163|consen 404 KGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFEKST 450 (1259)
T ss_pred cceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 46889999999999999999999999999999999999999765543
No 20
>KOG0160|consensus
Probab=99.38 E-value=2.7e-13 Score=99.10 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=52.8
Q ss_pred ccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 2 TKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 2 ~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
..+|+.|.+.++++++.++++..||...||++||.||++||+|+|.+||.+|....
T Consensus 308 ~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~ 363 (862)
T KOG0160|consen 308 EQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGAND 363 (862)
T ss_pred HHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCC
Confidence 46789999999999999999999999999999999999999999999999998744
No 21
>KOG4229|consensus
Probab=99.22 E-value=4.2e-12 Score=94.46 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=55.1
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
|.++++.++....||.+..+++.++|.+.|||+||.+|+|||.|||.+||..+.++++
T Consensus 365 l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~ 422 (1062)
T KOG4229|consen 365 LQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESD 422 (1062)
T ss_pred hhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCcccc
Confidence 4678999999999999999999999999999999999999999999999999998876
No 22
>KOG0161|consensus
Probab=99.22 E-value=7.6e-12 Score=96.78 Aligned_cols=56 Identities=64% Similarity=1.025 Sum_probs=53.5
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|..++++|++++|++.+.+..+.+|+..+..+|||++|+|||.|||.|||.+++.+
T Consensus 388 ~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~ 443 (1930)
T KOG0161|consen 388 FLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK 443 (1930)
T ss_pred HHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45789999999999999999999999999999999999999999999999999876
No 23
>PF02376 CUT: CUT domain; InterPro: IPR003350 A class, also called ONECUT, of homeodomain proteins. The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain (IPR001356 from INTERPRO), often found downstream of the CUT domain. Proteins display two modes of DNA binding, which hinge on the homeodomain and on the linker that separates it from the cut domain, and two modes of transcriptional stimulation, which hinge on the homeodomain [].; GO: 0003677 DNA binding; PDB: 1WH6_A 2D5V_A 2CSF_A 1X2L_A 2O49_A 2O4A_A 1YSE_A 1S7E_A 1WIZ_A 1WH8_A.
Probab=77.10 E-value=2.4 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 33 ISKACYERMFRWLVN 47 (60)
Q Consensus 33 laK~lY~rLF~wiV~ 47 (60)
-.|.+|-||++||-.
T Consensus 60 ~gre~y~RM~nWL~~ 74 (87)
T PF02376_consen 60 KGREPYIRMYNWLSL 74 (87)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred cccHHHHHHHHHhcC
Confidence 468899999999853
No 24
>PF11758 Bacteriocin_IIi: Aureocin-like type II bacteriocin; InterPro: IPR020968 This is a small family of type II bacteriocins usually encoded on a plasmid. Characteristically the members are small, cationic, rich in Lys and Try, and bring about a generalised membrane permeabilisation leading to leakage of ions. The family includes aureocin A, lacticins Q and Z, and BhtB [, ].
Probab=72.71 E-value=2.8 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhc
Q psy17851 40 RMFRWLVNRINRS 52 (60)
Q Consensus 40 rLF~wiV~~IN~~ 52 (60)
.-|+||+++|++-
T Consensus 36 ~a~dWI~~kI~~I 48 (51)
T PF11758_consen 36 MAIDWIVQKIKKI 48 (51)
T ss_pred chHHHHHHHHHHH
Confidence 4589999999864
No 25
>PF11310 DUF3113: Protein of unknown function (DUF3113); InterPro: IPR021461 This entry is represented by Bacteriophage 92, Orf93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.70 E-value=18 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred ccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy17851 6 LKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYER 40 (60)
Q Consensus 6 ~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~r 40 (60)
..-++-++=-+.+....-.+..+..++||+.||..
T Consensus 7 INAtidiRIPTeVe~~~~~~vD~eKe~LAdyLy~N 41 (60)
T PF11310_consen 7 INATIDIRIPTEVEYHHFDDVDKEKEALADYLYNN 41 (60)
T ss_pred eeeEEeEeccceeeecchhhhhhHHHHHHHHHhcC
Confidence 33444445445556667788889999999999963
No 26
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=58.94 E-value=5.9 Score=28.45 Aligned_cols=11 Identities=45% Similarity=1.322 Sum_probs=9.9
Q ss_pred HHHHHHHHHHH
Q psy17851 38 YERMFRWLVNR 48 (60)
Q Consensus 38 Y~rLF~wiV~~ 48 (60)
|++|.+|||+|
T Consensus 13 ~~kl~dWLv~R 23 (507)
T PF05600_consen 13 YSKLLDWLVDR 23 (507)
T ss_pred hhHHHHHHHHc
Confidence 89999999984
No 27
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=58.54 E-value=5.2 Score=23.87 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 33 ISKACYERMFRWLVNRI 49 (60)
Q Consensus 33 laK~lY~rLF~wiV~~I 49 (60)
-||+-|+.+|.|=..+.
T Consensus 22 ra~~FY~~vFgW~~~~~ 38 (127)
T COG3324 22 RAKAFYEKVFGWTFEDY 38 (127)
T ss_pred HHHHHHHHhhCceeccc
Confidence 57899999999976655
No 28
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=52.08 E-value=14 Score=23.95 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17851 32 AISKACYERMFRWLVNRI 49 (60)
Q Consensus 32 alaK~lY~rLF~wiV~~I 49 (60)
-+||-+|+|+-.||---+
T Consensus 36 YfaKk~ySRiCSWiAYap 53 (239)
T PF13105_consen 36 YFAKKIYSRICSWIAYAP 53 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999997643
No 29
>PF15026 FAM74: FAM74 protein
Probab=49.84 E-value=52 Score=19.30 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17851 30 VEAISKACYERMFRWLVNRINRSLDT 55 (60)
Q Consensus 30 rdalaK~lY~rLF~wiV~~IN~~l~~ 55 (60)
..-|+.-+....|.||+..||.+-..
T Consensus 86 vqrls~~~h~~~~~~i~~~i~~~~~g 111 (127)
T PF15026_consen 86 VQRLSLLLHLAVFLWIIIAINFSFSG 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566677779999999999987643
No 30
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=48.81 E-value=21 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy17851 34 SKACYERMFRWLVNRINRS 52 (60)
Q Consensus 34 aK~lY~rLF~wiV~~IN~~ 52 (60)
+..||.++-.|+....+..
T Consensus 12 k~~ly~~~~~W~~~~~~~~ 30 (91)
T PF14730_consen 12 KDQLYDRAKKWLAKNFKSA 30 (91)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3579999999999988873
No 31
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=48.50 E-value=46 Score=18.82 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17851 28 FAVEAISKACYERMFRWLVN 47 (60)
Q Consensus 28 ~~rdalaK~lY~rLF~wiV~ 47 (60)
..-.-++.++|.|+-+++++
T Consensus 11 EilnEfs~~vy~rvlnyVln 30 (89)
T PF08998_consen 11 EILNEFSSSVYNRVLNYVLN 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35667999999999999986
No 32
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=48.35 E-value=11 Score=23.80 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhcccc
Q psy17851 39 ERMFRWLVNRINRSLDT 55 (60)
Q Consensus 39 ~rLF~wiV~~IN~~l~~ 55 (60)
+.||+||.++|+.-+..
T Consensus 107 ~~lFd~ia~~i~~f~~~ 123 (206)
T PF00349_consen 107 EELFDFIADCIAEFLKE 123 (206)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 78999999999987764
No 33
>KOG4539|consensus
Probab=45.78 E-value=16 Score=24.28 Aligned_cols=14 Identities=7% Similarity=0.574 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhc
Q psy17851 39 ERMFRWLVNRINRS 52 (60)
Q Consensus 39 ~rLF~wiV~~IN~~ 52 (60)
+.||+||+++.|..
T Consensus 55 d~l~n~I~~k~~K~ 68 (274)
T KOG4539|consen 55 DLLVNFISDKMNKA 68 (274)
T ss_pred HHHHHHHHHHHHHH
Confidence 67999999999975
No 34
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=43.66 E-value=18 Score=26.10 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q psy17851 36 ACYERMFRWLVNR 48 (60)
Q Consensus 36 ~lY~rLF~wiV~~ 48 (60)
.|++.+|+||+.-
T Consensus 150 gIf~~ifdWi~~~ 162 (473)
T PRK15362 150 GIFGAIFDWIVGI 162 (473)
T ss_pred cHHHHHHHHHHHH
Confidence 5899999999864
No 35
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=42.92 E-value=21 Score=17.39 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q psy17851 32 AISKACYERMFR 43 (60)
Q Consensus 32 alaK~lY~rLF~ 43 (60)
..||.+|+.+|.
T Consensus 34 ~wAk~~f~~~F~ 45 (45)
T PF10585_consen 34 EWAKDLFEELFG 45 (45)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 468899999984
No 36
>PF11774 Lsr2: Lsr2 ; InterPro: IPR024412 This entry represents Lsr2, which is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homologue of the H-NS-like proteins []. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression [, ].; PDB: 4E1R_B 4E1P_B 2KNG_A.
Probab=42.17 E-value=68 Score=18.48 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=23.5
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAISKAC 37 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdalaK~l 37 (60)
....|..++.-|+.+.|...|++|++.|
T Consensus 24 F~ldG~~YeIDLs~~na~~lr~~l~~yi 51 (110)
T PF11774_consen 24 FGLDGVDYEIDLSAENAAKLRDALAPYI 51 (110)
T ss_dssp EEETTEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred EEECCeEEEEECCHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999865
No 37
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=42.14 E-value=34 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy17851 22 TKEQVEFAVEAISKACYE 39 (60)
Q Consensus 22 ~~~~a~~~rdalaK~lY~ 39 (60)
...||...|.++||+|=.
T Consensus 63 ~~gQa~Air~aiaraL~~ 80 (121)
T PF00380_consen 63 ISGQAGAIRLAIARALVK 80 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehHHHHHHHHHHHHH
Confidence 356999999999999954
No 38
>PF09715 Plasmod_dom_1: Plasmodium protein of unknown function (Plasmod_dom_1); InterPro: IPR006410 These sequences represent an uncharacterised family consisting of a small number of hypothetical proteins of the malaria parasite Plasmodium falciparum (isolate 3D7).
Probab=41.83 E-value=20 Score=19.31 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17851 25 QVEFAVEAISKACYERMFRWLVNRIN 50 (60)
Q Consensus 25 ~a~~~rdalaK~lY~rLF~wiV~~IN 50 (60)
.+.....|++--+---.|.||++|||
T Consensus 40 n~l~~~~a~~p~~~i~~~~Yi~~Rin 65 (67)
T PF09715_consen 40 NSLSLMTAAIPFFAIPIFPYIVKRIN 65 (67)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHhh
Confidence 33444555442222356789999998
No 39
>PF00605 IRF: Interferon regulatory factor transcription factor; InterPro: IPR001346 Viral infections induce the expression of type I interferons (IFN-alpha and IFN-beta) genes. The induction is due to the transcriptional activation of the IFN genes. Interferon regulatory factor I (IRF-1) is one of the transcription factors responsible for that activation. IRF-1 binds to an upstream regulatory cis element, known as the interferon consensus sequence (ICS), which is found in the promoters of type I IFN and IFN-inducible MHC class I genes. Interferon regulatory factor 2 (IRF-2) is a protein that also interacts with the ICS, but that does not function as an activator; rather, it suppresses the function of IRF-1 under certain circumstances []. These proteins share a highly conserved N-terminal domain of about 100 amino acid residues which is involved in DNA-binding and which contain five conserved tryptophans. This domain is known as a 'tryptophan pentad repeat' or a 'tryptophan cluster' and is also present in: Interferon consensus sequence binding protein (ICSBP) [], a transcription factor expressed predominantly in lymphoid tissues and induced by IFN-gamma that also binds to the ICS. Transcriptional regulator ISGF3 gamma subunit []. ISGF3 is responsible for the initial stimulation of interferon-alpha-responsive genes. It recognises and binds to the interferon-stimulated response element (ISRE) within the regulatory sequences of target genes. Interferon regulatory factor 3 (IRF-3). Interferon regulatory factor 4 (IRF-4) which binds to the interferon- stimulated response element (ISRE) of the MHC class I promoter. Interferon regulatory factor 5 (IRF-5). Interferon regulatory factor 6 (IRF-6). Interferon regulatory factor 7 (IRF-7). Gamma Herpesviruses vIRF-1, -2 and -3, proteins with homology to the cellular transcription factors of the IRF family []. Neither vIRF-1 nor vIRF-2 bind to DNA with the same specificity as cellular IRFs, indicating that if vIRFs are DNA-binding proteins, their binding has a pattern distinct from that of the cellular IRFs. Whether vIRF-3 can bind DNA with the same specificity as cellular IRFs is not known. The IRF tryptophan pentad repeat DNA-binding domain has an alpha/beta architecture comprising a cluster of three alpha-helices (alpha1-alpha3) flanked on one side by a mixed four-stranded beta-sheet (beta1-beta4). It forms a helix-turn-helix motif that binds to ISRE consensus sequences found in target promoters. Three of the tryptophan residues contact DNA by recognising a GAAA sequence []. This entry represents the IRF tryptophan pentad repeat DNA-binding domain.; GO: 0000975 regulatory region DNA binding; PDB: 2IRF_H 1IRF_A 1IRG_A 2DLL_A 3QU3_C 2PI0_D 2O6G_G 1T2K_A 2O61_A 3QU6_C ....
Probab=41.14 E-value=22 Score=20.57 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcccc
Q psy17851 40 RMFRWLVNRINRSLDT 55 (60)
Q Consensus 40 rLF~wiV~~IN~~l~~ 55 (60)
||-.||+..||+-.-+
T Consensus 3 rlr~WL~~~i~sg~yp 18 (109)
T PF00605_consen 3 RLRPWLIEQIDSGRYP 18 (109)
T ss_dssp -HHHHHHHHHHHTCST
T ss_pred cHHHHHHHHHhcCCCC
Confidence 6789999999986543
No 40
>TIGR01519 plasmod_dom_1 Plasmodium falciparum uncharacterized domain. This model represents an uncharacterized domain present in roughly eight hypothetical proteins of the malaria parasite Plasmodium falciparum.
Probab=40.95 E-value=21 Score=19.33 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q psy17851 40 RMFRWLVNRINR 51 (60)
Q Consensus 40 rLF~wiV~~IN~ 51 (60)
-.|.||++|||-
T Consensus 55 ~i~~Yi~~RinF 66 (70)
T TIGR01519 55 PILSYITKRINF 66 (70)
T ss_pred hhHHHHHHHHHh
Confidence 457899999993
No 41
>CHL00079 rps9 ribosomal protein S9
Probab=36.20 E-value=38 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy17851 22 TKEQVEFAVEAISKACYE 39 (60)
Q Consensus 22 ~~~~a~~~rdalaK~lY~ 39 (60)
...||...|.++||+|-.
T Consensus 72 ~sgQa~Air~aIaraLv~ 89 (130)
T CHL00079 72 LTGQAEAIRLGLARALCK 89 (130)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 356999999999999965
No 42
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=36.14 E-value=39 Score=20.41 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
.-||...|.++||+|-.
T Consensus 73 ~GQA~AiR~gIaRAL~~ 89 (130)
T COG0103 73 SGQAGAIRHGIARALVE 89 (130)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46999999999999843
No 43
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=36.13 E-value=64 Score=16.38 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred CceEEEeeCCHHHHHHHHHHHHH
Q psy17851 13 GRDFVTKSQTKEQVEFAVEAISK 35 (60)
Q Consensus 13 ~~e~~~~~~~~~~a~~~rdalaK 35 (60)
||-..+..++.++|....++|..
T Consensus 27 GGGRLVvEl~~~Ea~~L~~~l~~ 49 (51)
T PF11314_consen 27 GGGRLVVELNPDEAKELGEALKE 49 (51)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHh
Confidence 67889999999999998888864
No 44
>PRK01917 cation-binding hemerythrin HHE family protein; Provisional
Probab=35.97 E-value=62 Score=18.94 Aligned_cols=21 Identities=5% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17851 31 EAISKACYERMFRWLVNRINR 51 (60)
Q Consensus 31 dalaK~lY~rLF~wiV~~IN~ 51 (60)
..++..+...|.+|+++.|..
T Consensus 96 ~~~~~~l~~~L~~Wl~~HI~~ 116 (139)
T PRK01917 96 FELGRRLVAELPEWFDQHVRT 116 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347778889999999998863
No 45
>COG5004 P2-like prophage tail protein X [General function prediction only]
Probab=35.19 E-value=63 Score=17.40 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17851 28 FAVEAISKACYERMFRWLVNRI 49 (60)
Q Consensus 28 ~~rdalaK~lY~rLF~wiV~~I 49 (60)
+..|+||-..|+|+-. +++-+
T Consensus 11 DtvDalc~~~Ygrt~~-v~eav 31 (70)
T COG5004 11 DTVDALCWRVYGRTTG-VTEAV 31 (70)
T ss_pred chHHHHHHHHHhhHHH-HHHHH
Confidence 5789999999999943 55533
No 46
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=34.83 E-value=26 Score=19.90 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 33 ISKACYERMFRWLVN 47 (60)
Q Consensus 33 laK~lY~rLF~wiV~ 47 (60)
+-|.=|+.||++||+
T Consensus 12 i~r~~~~~iF~FL~~ 26 (97)
T PRK13916 12 IKKEDYPQIFDFLEN 26 (97)
T ss_pred hcccccHHHHHHHHH
Confidence 346668999999986
No 47
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=33.75 E-value=46 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhc
Q psy17851 29 AVEAISKACYERM-FRWLVNRINRS 52 (60)
Q Consensus 29 ~rdalaK~lY~rL-F~wiV~~IN~~ 52 (60)
..++||-.||+.+ |+||-.||++.
T Consensus 312 dmealAvGL~e~~~~~yl~~Rv~Qv 336 (471)
T COG3033 312 DMEALAVGLREGVNFDYLAHRVAQV 336 (471)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4568999999887 99999999974
No 48
>COG4803 Predicted membrane protein [Function unknown]
Probab=33.74 E-value=59 Score=20.37 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred eCceEEEeeCCHHHHHHHHHHHHHH
Q psy17851 12 VGRDFVTKSQTKEQVEFAVEAISKA 36 (60)
Q Consensus 12 ~~~e~~~~~~~~~~a~~~rdalaK~ 36 (60)
.++..+.++++.++=...|++++.+
T Consensus 139 ~~g~vlrTSLs~e~E~~Lr~a~~~~ 163 (170)
T COG4803 139 FGGTVLRTSLSKEEEQKLRAALSEG 163 (170)
T ss_pred cCCEEEEccCCHHHHHHHHHHHhcc
Confidence 4789999999999999999999864
No 49
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=33.72 E-value=15 Score=23.78 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhccc
Q psy17851 37 CYERMFRWLVNRINRSLD 54 (60)
Q Consensus 37 lY~rLF~wiV~~IN~~l~ 54 (60)
-|+--|||||.+|-.+..
T Consensus 178 ~hsphFDWVvahigs~FP 195 (213)
T PF14837_consen 178 QHSPHFDWVVAHIGSCFP 195 (213)
T ss_pred ccCCchhhhHHHHHhhCc
Confidence 467789999999977653
No 50
>PLN00210 40S ribosomal protein S16; Provisional
Probab=33.51 E-value=51 Score=19.96 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|=.
T Consensus 73 sgQa~Air~aiaraL~~ 89 (141)
T PLN00210 73 TSQIYAIRQSIAKALVA 89 (141)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46999999999999955
No 51
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=33.17 E-value=54 Score=19.56 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 73 sgQa~Air~aiaraLv~ 89 (130)
T PRK00132 73 SGQAGAIRHGIARALLE 89 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999999965
No 52
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=33.06 E-value=31 Score=17.96 Aligned_cols=8 Identities=38% Similarity=1.315 Sum_probs=6.1
Q ss_pred HHHHHHHH
Q psy17851 38 YERMFRWL 45 (60)
Q Consensus 38 Y~rLF~wi 45 (60)
.+++|+|+
T Consensus 49 L~~i~DWl 56 (58)
T PF11165_consen 49 LDQIFDWL 56 (58)
T ss_pred HHHHHHHH
Confidence 56788886
No 53
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=32.53 E-value=62 Score=18.38 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred eCceEEEeeCCHHHHHHHHHHHHH
Q psy17851 12 VGRDFVTKSQTKEQVEFAVEAISK 35 (60)
Q Consensus 12 ~~~e~~~~~~~~~~a~~~rdalaK 35 (60)
.++..+.++++.++-...++++.+
T Consensus 78 ~gg~v~~t~ls~~~e~~L~~al~~ 101 (102)
T PF06897_consen 78 FGGKVLRTSLSEEDEDELQEALDE 101 (102)
T ss_pred cCCEEEeccCCHHHHHHHHHHHhc
Confidence 467899999999999988888875
No 54
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=32.44 E-value=21 Score=20.42 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFRW 44 (60)
Q Consensus 30 rdalaK~lY~rLF~w 44 (60)
+..+.-.+|.|||.|
T Consensus 52 ~k~~phvl~crlwRw 66 (103)
T PF03165_consen 52 RKGLPHVLYCRLWRW 66 (103)
T ss_dssp EEE-HHHHHHHHHT-
T ss_pred cccCceEEEEEEech
Confidence 445677899999999
No 55
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.43 E-value=36 Score=15.65 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=6.8
Q ss_pred HHHHHHHHH
Q psy17851 34 SKACYERMF 42 (60)
Q Consensus 34 aK~lY~rLF 42 (60)
|++||+|.-
T Consensus 6 AR~IyeR~v 14 (32)
T PF02184_consen 6 ARSIYERFV 14 (32)
T ss_pred HHHHHHHHH
Confidence 678999853
No 56
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=31.33 E-value=98 Score=17.12 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17851 24 EQVEFAVEAISKACYERMFRWLVN 47 (60)
Q Consensus 24 ~~a~~~rdalaK~lY~rLF~wiV~ 47 (60)
+.....-+.++..|++++-+||.+
T Consensus 73 ~~~~~i~~~~~~~l~~~l~~Wi~~ 96 (100)
T smart00337 73 DLVSRLASWLSEFLRETLRSWIRE 96 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777888888888754
No 57
>cd00522 Hemerythrin Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the muscle tissue of sipunculids as well as in polycheate and oligocheate annelids. In addition to oxygen transport, Mhr proteins are involved in cadmium fixation and host anti-bacterial defense. Hr and Mhr proteins have the same "four alpha helix bundle" motif and active site structure. Hr forms oligomers, the octameric form being most prevalent, while Mhr is monomeric.
Probab=31.26 E-value=1e+02 Score=17.25 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy17851 29 AVEAISKACYERMFRWLVNRINR 51 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~~IN~ 51 (60)
.+..++..+..-|.+|+++.|..
T Consensus 82 ~~~~~~~~~~~~l~~Wl~~HI~~ 104 (113)
T cd00522 82 LKAPVGQADLKYLKDWLVNHIKT 104 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 34445667888899999998864
No 58
>PF07541 EIF_2_alpha: Eukaryotic translation initiation factor 2 alpha subunit; InterPro: IPR011488 In Eukaryota and Archaea, translation initiation factor 2 (eIF2/aIF2), which contains three subunits (alpha, beta and gamma), is pivotal for binding of charged initiator tRNA to the small ribosomal subunit. This entry represents the alpha subunit of both eukaryota and archaeal translation initiator factor 2.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0005850 eukaryotic translation initiation factor 2 complex; PDB: 2QN6_B 3CW2_C 2AHO_B 3QSY_B 3V11_B 2QMU_B 1YZ7_A 1YZ6_A 3AEV_A 1KL9_A ....
Probab=31.02 E-value=88 Score=17.94 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=27.1
Q ss_pred ccccceEEeCceEEEeeCCHHHHHHHHHHHHHHH
Q psy17851 4 AFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKAC 37 (60)
Q Consensus 4 aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~l 37 (60)
-+..+.++++++.-.+....+.....|++|-++.
T Consensus 53 ~i~~~~vkI~~~iel~c~~~dGIe~IK~aL~~~~ 86 (114)
T PF07541_consen 53 RIKPQPVKIRADIELTCFAPDGIEAIKKALRAAE 86 (114)
T ss_dssp HCCHT-EEEEEEEEEEE-STTHHHHHHHHHHHHH
T ss_pred hCcCCcEEEEEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 3556778899999999999999999999997765
No 59
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=30.71 E-value=62 Score=19.76 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|=.
T Consensus 79 sgQA~Air~aIaRAL~~ 95 (147)
T PTZ00086 79 VAQAYAIRQAIAKGLVA 95 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999999955
No 60
>PF06481 COX_ARM: COX Aromatic Rich Motif; InterPro: IPR010514 COX2 (Cytochrome O ubiquinol OXidase 2) is a major component of the respiratory complex during vegetative growth. It transfers electrons from a quinol to the binuclear centre of the catalytic subunit 1. The function of this region is not known.; GO: 0008827 cytochrome o ubiquinol oxidase activity, 0022900 electron transport chain, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1CYX_A 1CYW_A 1FFT_G.
Probab=30.52 E-value=40 Score=16.39 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q psy17851 40 RMFRWLVNRI 49 (60)
Q Consensus 40 rLF~wiV~~I 49 (60)
.||+.||.+-
T Consensus 33 ~LF~~Iv~k~ 42 (47)
T PF06481_consen 33 GLFDDIVMKY 42 (47)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5888888764
No 61
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=30.38 E-value=54 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 73 sgQa~Air~aIaraL~~ 89 (134)
T PRK00474 73 MGQADAARTAIARGLVE 89 (134)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45899999999999965
No 62
>KOG0136|consensus
Probab=30.25 E-value=28 Score=26.26 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q psy17851 36 ACYERMFRWLVN 47 (60)
Q Consensus 36 ~lY~rLF~wiV~ 47 (60)
.+|++||+|--.
T Consensus 632 nVYenLFewAk~ 643 (670)
T KOG0136|consen 632 NVYENLFEWAKK 643 (670)
T ss_pred chhHHHHHHHhh
Confidence 589999999765
No 63
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=30.08 E-value=55 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++|++|-.
T Consensus 69 sgQa~Air~aIaraL~~ 85 (130)
T TIGR03627 69 MGQADAARTAIARGLVE 85 (130)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45899999999999965
No 64
>PRK00078 Maf-like protein; Reviewed
Probab=29.86 E-value=87 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 74 V~~~g~ilgKP~~~eeA~~~L~~ls 98 (192)
T PRK00078 74 VAFNGKVLGKPKDEEDAFEMLKALS 98 (192)
T ss_pred EEECCEEeCCCCCHHHHHHHHHHHC
Confidence 4468899999999999988665553
No 65
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=29.47 E-value=43 Score=18.32 Aligned_cols=12 Identities=25% Similarity=0.102 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q psy17851 27 EFAVEAISKACY 38 (60)
Q Consensus 27 ~~~rdalaK~lY 38 (60)
...||||+|+|=
T Consensus 20 ~tl~daL~KaLk 31 (74)
T cd01816 20 MTLRDALAKALK 31 (74)
T ss_pred cCHHHHHHHHHH
Confidence 357899999983
No 66
>PRK04694 Maf-like protein; Reviewed
Probab=28.48 E-value=94 Score=19.44 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=20.0
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 74 v~~~g~ilgKP~~~~eA~~~L~~ls 98 (190)
T PRK04694 74 VVLGERVFGKPVDVDDAIAMLRALS 98 (190)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4458899999999999988665553
No 67
>KOG3749|consensus
Probab=28.32 E-value=41 Score=24.90 Aligned_cols=13 Identities=23% Similarity=0.836 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhh
Q psy17851 39 ERMFRWLVNRINR 51 (60)
Q Consensus 39 ~rLF~wiV~~IN~ 51 (60)
+|+|+||..|++.
T Consensus 552 ~RVlewI~rR~~g 564 (640)
T KOG3749|consen 552 ARVLEWIFRRVAG 564 (640)
T ss_pred hHHHHHHHHHhcc
Confidence 4889999999875
No 68
>PF14409 Herpeto_peptide: Ribosomally synthesized peptide in Herpetosiphon
Probab=28.10 E-value=29 Score=18.09 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=7.8
Q ss_pred HHHHHHHHhhc
Q psy17851 42 FRWLVNRINRS 52 (60)
Q Consensus 42 F~wiV~~IN~~ 52 (60)
|.|+++||+.-
T Consensus 3 ~r~~~dr~~~~ 13 (58)
T PF14409_consen 3 FRWFADRTTEY 13 (58)
T ss_pred chhhhhhhhhh
Confidence 67888887753
No 69
>PRK00148 Maf-like protein; Reviewed
Probab=28.04 E-value=99 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.0
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 71 V~~~g~Il~KP~~~eeA~~~L~~ls 95 (194)
T PRK00148 71 LLIDGRLLGKPHTPEEAIERWQQMS 95 (194)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4458899999999999988665553
No 70
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=27.78 E-value=44 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q psy17851 36 ACYERMFRWLVN 47 (60)
Q Consensus 36 ~lY~rLF~wiV~ 47 (60)
.+|++||+|.-.
T Consensus 153 ~vYe~l~~~a~~ 164 (187)
T PF01756_consen 153 DVYEALFEWAKK 164 (187)
T ss_dssp -HHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 579999999655
No 71
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=27.46 E-value=1.5e+02 Score=17.87 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhccccccc
Q psy17851 38 YERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 38 Y~rLF~wiV~~IN~~l~~~~~ 58 (60)
=..-|+|++.+|+..+....|
T Consensus 64 ~~~~~~~li~kie~~L~~~~d 84 (128)
T PF12614_consen 64 DYEEFQFLIKKIEAALLQHSD 84 (128)
T ss_pred chHHHHHHHHHHHHHhccccc
Confidence 455899999999999976654
No 72
>cd00103 IRF Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The IRF family is characterized by a unique 'tryptophan cluster' DNA-binding region. Viral IRFs bind to cellular IRFs; block type I and II interferons and host IRF-mediated transcriptional activation.
Probab=27.19 E-value=40 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcccc
Q psy17851 40 RMFRWLVNRINRSLDT 55 (60)
Q Consensus 40 rLF~wiV~~IN~~l~~ 55 (60)
+|=.|||..||+---+
T Consensus 3 ~lr~WL~~~i~sg~yp 18 (107)
T cd00103 3 RLRPWLVEQVDSGTYP 18 (107)
T ss_pred chHHHHHHHhccCCCC
Confidence 6778999999976544
No 73
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=27.05 E-value=68 Score=21.04 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy17851 36 ACYERMFRWLVNR 48 (60)
Q Consensus 36 ~lY~rLF~wiV~~ 48 (60)
.+.+.+|+||+.-
T Consensus 56 Gi~~kIf~wi~~a 68 (306)
T PF04888_consen 56 GIFSKIFGWIGTA 68 (306)
T ss_pred ChHHHHHHHHHHH
Confidence 6899999999864
No 74
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=26.95 E-value=1.1e+02 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 73 V~~~g~ilgKP~~~~eA~~~L~~ls 97 (183)
T TIGR00172 73 VILDGEIYGKPKDKEEAAEFLRKLS 97 (183)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4458999999999999988665553
No 75
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=26.57 E-value=82 Score=16.81 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.++..+|.+||.
T Consensus 15 ~~~~~g~~~f~~lF~ 29 (110)
T PF00042_consen 15 DKDEFGSEFFQRLFE 29 (110)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 467788999999997
No 76
>PRK01839 Maf-like protein; Reviewed
Probab=25.86 E-value=1.2e+02 Score=19.36 Aligned_cols=25 Identities=4% Similarity=0.135 Sum_probs=20.1
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 91 V~~~g~IlgKP~~~eeA~~~L~~ls 115 (209)
T PRK01839 91 VTIDGAILGKPADAADALAMLTRLA 115 (209)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999988766554
No 77
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=25.73 E-value=1.2e+02 Score=16.29 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q psy17851 21 QTKEQVEFAVEAISKACYER---MFRWLVNRIN 50 (60)
Q Consensus 21 ~~~~~a~~~rdalaK~lY~r---LF~wiV~~IN 50 (60)
.........|.-|.+.|+.. .|.|++.++|
T Consensus 48 rgL~~lv~kRrrLL~YLk~~~~~~y~~~i~~L~ 80 (80)
T cd00353 48 RGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHcCchhHHHHHHhcc
Confidence 34445667788999999888 8999988754
No 78
>PRK00648 Maf-like protein; Reviewed
Probab=25.55 E-value=1.1e+02 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 75 V~~~g~ilgKP~~~~eA~~~L~~ls 99 (191)
T PRK00648 75 VWYDGKVLGKPKDEEEAVEMLRTLS 99 (191)
T ss_pred EEECCEEeCCCCCHHHHHHHHHHhC
Confidence 4468899999999999987665553
No 79
>PRK14361 Maf-like protein; Provisional
Probab=24.84 E-value=1.2e+02 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 68 V~~~g~ilgKP~~~eeA~~~L~~ls 92 (187)
T PRK14361 68 VALGGVLLAKPADEAENEAFLRVLS 92 (187)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999988665553
No 80
>PRK14364 Maf-like protein; Provisional
Probab=24.83 E-value=1.2e+02 Score=18.76 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.8
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 67 V~~~g~ilgKP~~~eeA~~~L~~ls 91 (181)
T PRK14364 67 LGLDGQIIGKPDSKQHAFDIWKQLS 91 (181)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999987655543
No 81
>smart00807 AKAP_110 A-kinase anchor protein 110 kDa. This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction PUBMED:10319321.
Probab=24.82 E-value=76 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17851 21 QTKEQVEFAVEAISKACYERMFRW 44 (60)
Q Consensus 21 ~~~~~a~~~rdalaK~lY~rLF~w 44 (60)
+..+.|.+..||+-|-||+-||.=
T Consensus 370 hg~Q~AtdimdaML~kL~s~l~~~ 393 (851)
T smart00807 370 HGSQKATDIMDAMLKKLYSVLFAK 393 (851)
T ss_pred ccccchHHHHHHHHHHHHHHHHcc
Confidence 445678999999999999999973
No 82
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.77 E-value=86 Score=15.36 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+...+.||..+|+
T Consensus 51 ~~~a~~~Lh~~f~~ 64 (64)
T cd04917 51 KDEVVQRLHSRLFE 64 (64)
T ss_pred HHHHHHHHHHHHhC
Confidence 45567778888874
No 83
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=24.51 E-value=1.4e+02 Score=18.46 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 70 v~~~g~il~KP~~~~eA~~~L~~ls 94 (180)
T cd00555 70 VVLDGRILGKPKDREEAREMLKRLS 94 (180)
T ss_pred EEECCEEEcCCCCHHHHHHHHHHHc
Confidence 4458899999999999988665553
No 84
>PRK04056 Maf-like protein; Reviewed
Probab=24.50 E-value=1.2e+02 Score=18.79 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 71 V~~~g~ilgKP~~~~eA~~~L~~ls 95 (180)
T PRK04056 71 VSCGNKILRKAKDKEEAREMLKLQS 95 (180)
T ss_pred EEECCEEecCCCCHHHHHHHHHHHC
Confidence 4458899999999999988665553
No 85
>PRK14366 Maf-like protein; Provisional
Probab=24.19 E-value=1.3e+02 Score=18.96 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 76 V~~~g~ilgKP~~~eeA~~mL~~ls 100 (195)
T PRK14366 76 VCCGRRILLKAETEEQAEEYLELLS 100 (195)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4457899999999999988766554
No 86
>PRK14368 Maf-like protein; Provisional
Probab=24.15 E-value=1.3e+02 Score=18.92 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=20.1
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 75 V~~~g~ilgKP~~~~eA~~~L~~ls 99 (193)
T PRK14368 75 VVCDGEIMGKPKDEADAVRMLKKLS 99 (193)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999988665553
No 87
>PRK10698 phage shock protein PspA; Provisional
Probab=24.12 E-value=51 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhccccccc
Q psy17851 36 ACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 36 ~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
.|++|+++.|-..||..++.-.|
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaED 24 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAED 24 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcC
Confidence 58899999999999998876443
No 88
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=23.95 E-value=1.3e+02 Score=19.37 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy17851 31 EAISKACYERMFRWLVNRINRSLDTIMCA 59 (60)
Q Consensus 31 dalaK~lY~rLF~wiV~~IN~~l~~~~~~ 59 (60)
|...+.++..+++||-..+=..-.+..|+
T Consensus 300 d~~~~~~~~~i~~fl~~~~~~~~~~~~~~ 328 (330)
T PLN02298 300 DENIEIVRRDILSWLNERCTGKATPSEDS 328 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 45567788888999888765444444443
No 89
>PRK00032 Maf-like protein; Reviewed
Probab=23.35 E-value=1.3e+02 Score=18.81 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 73 V~~~g~IlgKP~~~eeA~~~L~~ls 97 (190)
T PRK00032 73 VVLDGEVLEKPRDAADAAAMLRALS 97 (190)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999987655543
No 90
>PRK02478 Maf-like protein; Reviewed
Probab=23.25 E-value=1.4e+02 Score=18.76 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 79 V~~~g~ilgKP~~~~eA~~~L~~ls 103 (199)
T PRK02478 79 MSLGDEVFHKPKDMEEARRHLQKLS 103 (199)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhc
Confidence 4468899999999999987665553
No 91
>PRK00884 Maf-like protein; Reviewed
Probab=23.24 E-value=1.4e+02 Score=18.83 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.4
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAI 33 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdal 33 (60)
+..+|+.+.+|.+.++|...-..|
T Consensus 72 V~~~g~ilgKP~~~eeA~~~L~~l 95 (194)
T PRK00884 72 CVLDGEITGKPLTEENARAQLRKA 95 (194)
T ss_pred EEECCEEecCCCCHHHHHHHHHHH
Confidence 446889999999999998875554
No 92
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=23.09 E-value=1.3e+02 Score=18.79 Aligned_cols=24 Identities=8% Similarity=0.270 Sum_probs=17.3
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAI 33 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdal 33 (60)
+..+|+.+.+|.+.++|......+
T Consensus 74 v~~~g~Il~KP~~~eeA~~~L~~l 97 (195)
T PF02545_consen 74 VVCDGEILGKPKDEEEAREMLKSL 97 (195)
T ss_dssp EECTTEEE-S-SSHHHHHHHHHHH
T ss_pred eeeeeEEEeCCCCHHHHHHHHHhh
Confidence 445789999999999998765554
No 93
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=22.82 E-value=1.4e+02 Score=18.99 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=19.9
Q ss_pred eEEeCceEEEeeCCHHHHHHHHHHH
Q psy17851 9 RIKVGRDFVTKSQTKEQVEFAVEAI 33 (60)
Q Consensus 9 ~i~~~~e~~~~~~~~~~a~~~rdal 33 (60)
.+..+|+.+.+|.+.++|...-..|
T Consensus 73 vv~ldgrilgKP~~~~eA~~~L~~l 97 (193)
T COG0424 73 VVVLDGRILGKPKDEEEAREMLRKL 97 (193)
T ss_pred EEEECCEEecCCCCHHHHHHHHHHh
Confidence 3556899999999999998765544
No 94
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=22.37 E-value=1.2e+02 Score=15.03 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhc
Q psy17851 37 CYERMFRWLVNRINRS 52 (60)
Q Consensus 37 lY~rLF~wiV~~IN~~ 52 (60)
+|..++++|...|-..
T Consensus 1 l~~~i~~~l~~~I~~g 16 (64)
T PF00392_consen 1 LYEQIYDQLRQAILSG 16 (64)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4666777777776543
No 95
>PRK00234 Maf-like protein; Reviewed
Probab=22.10 E-value=1.2e+02 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 72 V~~~g~Il~KP~~~~eA~~mL~~ls 96 (192)
T PRK00234 72 AVLGGQILGKPHTFERAREQLLAAS 96 (192)
T ss_pred EEeCCEECCCCCCHHHHHHHHHHHC
Confidence 4458899999999999988665553
No 96
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=22.08 E-value=1.3e+02 Score=23.17 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=28.3
Q ss_pred eeCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccc
Q psy17851 19 KSQTKEQVEFAVEAISKA--CYERMFRWLVNRINRSLD 54 (60)
Q Consensus 19 ~~~~~~~a~~~rdalaK~--lY~rLF~wiV~~IN~~l~ 54 (60)
.++++......++.+++. |+...|+||+..|-....
T Consensus 13 ~~~p~~~~~~i~~~~~~~~~lt~~~~d~Il~~I~~~y~ 50 (858)
T PRK14898 13 LDLPRSLKDELFEKLSKRDGVTEEMVEEIIDEVVSAYL 50 (858)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 456777777888888865 999999999998775543
No 97
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=21.79 E-value=1e+02 Score=14.88 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q psy17851 35 KACYERMFRWLVN 47 (60)
Q Consensus 35 K~lY~rLF~wiV~ 47 (60)
--++.|+.+|+|.
T Consensus 11 iLi~PrllnyiVa 23 (39)
T PF11295_consen 11 ILIMPRLLNYIVA 23 (39)
T ss_pred HHHHHHHHHHHHH
Confidence 3567899999885
No 98
>PRK04425 Maf-like protein; Reviewed
Probab=21.74 E-value=1.5e+02 Score=18.65 Aligned_cols=24 Identities=4% Similarity=-0.143 Sum_probs=19.2
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAI 33 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdal 33 (60)
+..+|+.+.+|.+.++|...-..+
T Consensus 75 V~~~g~ilgKP~~~eeA~~~L~~l 98 (196)
T PRK04425 75 AWCDGRQWGKPMNLANAQKMLMHL 98 (196)
T ss_pred EEECCEEecCCCCHHHHHHHHHHh
Confidence 446889999999999998765544
No 99
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=21.72 E-value=1.7e+02 Score=18.09 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy17851 32 AISKACYERMFRWLVNRIN 50 (60)
Q Consensus 32 alaK~lY~rLF~wiV~~IN 50 (60)
-++-.|...||-|+-.+|-
T Consensus 32 l~f~~lWqglFiwlF~qIr 50 (164)
T PF10624_consen 32 LLFIVLWQGLFIWLFIQIR 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999993
No 100
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=21.72 E-value=80 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17851 31 EAISKACYERMFRWLVNRINR 51 (60)
Q Consensus 31 dalaK~lY~rLF~wiV~~IN~ 51 (60)
+...-.+|..+|+|++..+..
T Consensus 46 ~~~e~~~Y~~~~~~l~~~~~~ 66 (146)
T PF01712_consen 46 SKEEYDLYDKLFDELIEEIPK 66 (146)
T ss_dssp -HHHHHHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 445568999999999998765
No 101
>PRK02141 Maf-like protein; Reviewed
Probab=21.68 E-value=1.6e+02 Score=18.79 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 82 V~~~g~ilgKP~~~~eA~~mL~~ls 106 (207)
T PRK02141 82 ATFDGLQIGKPGTHERALAQLQAMR 106 (207)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999988665554
No 102
>PRK14362 Maf-like protein; Provisional
Probab=21.35 E-value=1.3e+02 Score=19.19 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 83 V~~~g~ilgKP~~~eeA~~~L~~ls 107 (207)
T PRK14362 83 VALDGMILGKPADRADALSMLRRLA 107 (207)
T ss_pred EEeCCEEcCCCCCHHHHHHHHHHhC
Confidence 4468899999999999988665553
No 103
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=21.27 E-value=1e+02 Score=16.89 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
....++..+|.+||.
T Consensus 18 ~~~~~g~~~f~~lf~ 32 (140)
T cd01040 18 DREEIGLEFYERLFK 32 (140)
T ss_pred cHHhHHHHHHHHHHH
Confidence 356788889998887
No 104
>smart00348 IRF interferon regulatory factor. interferon regulatory factor, also known as trytophan pentad repeat
Probab=21.25 E-value=68 Score=18.41 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcccc
Q psy17851 40 RMFRWLVNRINRSLDT 55 (60)
Q Consensus 40 rLF~wiV~~IN~~l~~ 55 (60)
||=.||+..||+-.-+
T Consensus 1 rlr~WL~~~i~sg~yp 16 (107)
T smart00348 1 RLRPWLVEQVESGQYP 16 (107)
T ss_pred ChHHHHHHHhccCCCC
Confidence 4668999999976543
No 105
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=21.24 E-value=1.2e+02 Score=14.93 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.0
Q ss_pred EEeeCCHHHHHHHHHHHHHHHHH
Q psy17851 17 VTKSQTKEQVEFAVEAISKACYE 39 (60)
Q Consensus 17 ~~~~~~~~~a~~~rdalaK~lY~ 39 (60)
+...-+.++|..++|..+..+++
T Consensus 29 lG~f~t~eeAa~Ayd~a~~~~~g 51 (61)
T cd00018 29 LGTFDTAEEAARAYDRAALKLRG 51 (61)
T ss_pred cCCCCCHHHHHHHHHHHHHHhcC
Confidence 34556899999999988877765
No 106
>PRK01441 Maf-like protein; Reviewed
Probab=21.07 E-value=1.5e+02 Score=18.82 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 82 V~~~g~il~KP~~~~eA~~~L~~ls 106 (207)
T PRK01441 82 VAVGRRILPKAELVDEASQCLRLLS 106 (207)
T ss_pred EEECCEEcCCCCCHHHHHHHHHHHC
Confidence 4457899999999999988665553
No 107
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=21.03 E-value=1.1e+02 Score=15.52 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.0
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHHH
Q psy17851 15 DFVTKSQTKEQVEFAVEAISKACY 38 (60)
Q Consensus 15 e~~~~~~~~~~a~~~rdalaK~lY 38 (60)
+....||+..|....-.|++|..|
T Consensus 47 ~~~~~PL~~~Ev~~i~kSi~k~~~ 70 (71)
T PF08708_consen 47 SNFSPPLPESEVKAIAKSIAKWTW 70 (71)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhcc
Confidence 335789999999888777777543
No 108
>PRK01526 Maf-like protein; Reviewed
Probab=20.99 E-value=1.6e+02 Score=18.69 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 80 V~~~g~IlgKP~~~~eA~~mL~~ls 104 (205)
T PRK01526 80 AAVGRRILPKATTYEEVKNCIKMLS 104 (205)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4468899999999999988665553
No 109
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=20.96 E-value=1.5e+02 Score=16.74 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17851 25 QVEFAVEAISKACYERMFRWLVNRI 49 (60)
Q Consensus 25 ~a~~~rdalaK~lY~rLF~wiV~~I 49 (60)
+|.+.|-++.|-+ +.|||-.+
T Consensus 19 ~a~Dmrv~ifkll----L~WlvlsL 39 (92)
T PF15128_consen 19 EANDMRVQIFKLL----LGWLVLSL 39 (92)
T ss_pred HhccHHHHHHHHH----HHHHHHHH
Confidence 3556666666655 45887643
No 110
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.80 E-value=71 Score=17.15 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFRWLVNRI 49 (60)
Q Consensus 31 dalaK~lY~rLF~wiV~~I 49 (60)
-+++..+++-||-||.--+
T Consensus 8 ~~~sQG~fA~LFv~Ll~yv 26 (71)
T PF10960_consen 8 LALSQGIFAVLFVWLLFYV 26 (71)
T ss_pred HHHHcCcHHHHHHHHHHHH
Confidence 4567788899999987644
No 111
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=20.77 E-value=87 Score=19.33 Aligned_cols=15 Identities=0% Similarity=0.142 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 27 EFAVEAISKACYERM 41 (60)
Q Consensus 27 ~~~rdalaK~lY~rL 41 (60)
.-.||++|+.+|..+
T Consensus 80 ~ICRDSfa~~Vk~~v 94 (150)
T PHA03073 80 KICRDSFASMVKSHV 94 (150)
T ss_pred HHHHHHHHHHHHHHh
Confidence 357999999999866
No 112
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=20.72 E-value=1.5e+02 Score=16.49 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17851 31 EAISKACYERMFRWLVNRINR 51 (60)
Q Consensus 31 dalaK~lY~rLF~wiV~~IN~ 51 (60)
+.++..+...|-+|++..|..
T Consensus 97 ~~~~~~~~~~l~~Wl~~HI~~ 117 (126)
T TIGR02481 97 ESLAEELLDFLKDWLVNHILK 117 (126)
T ss_pred hhHHHHHHHHHHHHHHHHhHH
Confidence 456667888899999998863
No 113
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=20.71 E-value=1.7e+02 Score=18.05 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=20.4
Q ss_pred eeCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q psy17851 19 KSQTKEQVEFAV-EAISKACYERMFRWLVNRINR 51 (60)
Q Consensus 19 ~~~~~~~a~~~r-dalaK~lY~rLF~wiV~~IN~ 51 (60)
.|++..-....+ -++|..||. ||..|+..
T Consensus 121 VPld~ralraL~~Sp~AlDiY~----WL~yR~~~ 150 (161)
T PF04796_consen 121 VPLDLRALRALKGSPLALDIYA----WLTYRLHR 150 (161)
T ss_pred CCCCHHHHHHHccChHHHHHHH----HHHHHHHh
Confidence 355554444555 489999999 99998864
No 114
>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.
Probab=20.67 E-value=78 Score=18.08 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=7.3
Q ss_pred HHHHHHHHH
Q psy17851 35 KACYERMFR 43 (60)
Q Consensus 35 K~lY~rLF~ 43 (60)
++||+.||.
T Consensus 7 ~~Iye~LFk 15 (95)
T PF03501_consen 7 IAIYEYLFK 15 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 578998886
No 115
>PHA02518 ParA-like protein; Provisional
Probab=20.64 E-value=1.2e+02 Score=18.05 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17851 34 SKACYERMFRWLVNRIN 50 (60)
Q Consensus 34 aK~lY~rLF~wiV~~IN 50 (60)
+..-|.+|++||..++.
T Consensus 194 a~~~~~~l~~ei~~~~~ 210 (211)
T PHA02518 194 AAEEIIQLVKELFRGIS 210 (211)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44558888889888763
No 116
>PRK14367 Maf-like protein; Provisional
Probab=20.30 E-value=1.7e+02 Score=18.48 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=19.7
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..++
T Consensus 79 V~~dg~IlgKP~~~eeA~~~L~~ls 103 (202)
T PRK14367 79 VVSDGIILGKPRSQAEAIEFLNRLS 103 (202)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhC
Confidence 4467899999999999988655553
No 117
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=20.27 E-value=98 Score=18.73 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFRWLVN 47 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~ 47 (60)
.|.++++.||+ ||..
T Consensus 66 KR~aISt~LY~----wL~k 80 (146)
T COG5132 66 KRGAISTKLYG----WLSK 80 (146)
T ss_pred hhhhHHHHHHH----HHHH
Confidence 47777777777 7765
No 118
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=20.13 E-value=71 Score=18.05 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHh
Q psy17851 39 ERMFRWLVNRIN 50 (60)
Q Consensus 39 ~rLF~wiV~~IN 50 (60)
..+|.||+.++|
T Consensus 152 ~~l~~~l~~~l~ 163 (163)
T cd04176 152 NELFAEIVRQMN 163 (163)
T ss_pred HHHHHHHHHhcC
Confidence 467888887664
No 119
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=20.07 E-value=2.4e+02 Score=20.32 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 26 VEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 26 a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
-...|+++++++|+.+=+ .-+.+|+++..+++
T Consensus 393 ~~e~r~~~t~~~~~~V~~-~Y~~L~~ai~g~~~ 424 (426)
T PLN02349 393 GAEAREAFTQAAYASVVE-QYAVLKSAIHGGQG 424 (426)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCC
Confidence 346789999999986655 56678888776553
Done!