Query psy17851
Match_columns 60
No_of_seqs 133 out of 1004
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 00:41:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7j_A Myosin VA; motor protei 99.8 4E-19 1.4E-23 127.4 5.9 57 1-57 371-427 (795)
2 1w9i_A Myosin II heavy chain; 99.8 1E-18 3.4E-23 125.2 5.9 57 1-57 389-445 (770)
3 1lkx_A Myosin IE heavy chain; 99.7 5.5E-19 1.9E-23 125.4 3.7 57 1-57 316-376 (697)
4 1kk8_A Myosin heavy chain, str 99.7 9.2E-19 3.2E-23 126.1 4.7 56 1-56 394-449 (837)
5 4db1_A Myosin-7; S1DC, cardiac 99.7 5.9E-19 2E-23 126.5 3.5 57 1-57 395-451 (783)
6 2dfs_A Myosin-5A; myosin-V, in 99.7 1.6E-18 5.6E-23 127.0 5.0 57 1-57 371-427 (1080)
7 2ycu_A Non muscle myosin 2C, a 99.7 2E-18 6.8E-23 125.8 5.3 57 1-57 366-422 (995)
8 1g8x_A Myosin II heavy chain f 99.7 3.1E-18 1.1E-22 125.1 4.5 57 1-57 389-445 (1010)
9 2v26_A Myosin VI; calmodulin-b 99.7 3.6E-18 1.2E-22 122.4 4.5 56 1-56 382-442 (784)
10 1i84_S Smooth muscle myosin he 99.7 4.8E-18 1.6E-22 124.7 3.2 56 1-56 397-452 (1184)
11 4anj_A Unconventional myosin-V 99.6 6.7E-17 2.3E-21 118.5 4.2 57 2-58 387-448 (1052)
12 2bec_B Sodium/hydrogen exchang 70.2 2.6 8.8E-05 19.9 1.7 35 21-55 4-38 (43)
13 4e1p_A Protein LSR2; anti-para 65.8 11 0.00039 19.0 4.7 28 10-37 25-52 (61)
14 1x2l_A CUT-like 2, homeobox pr 65.0 4.1 0.00014 22.6 2.0 14 33-46 68-81 (101)
15 3mhs_C SAGA-associated factor 63.7 9.7 0.00033 21.2 3.4 21 29-49 7-27 (99)
16 4e1r_A Protein LSR2; anti-para 62.7 16 0.00056 19.7 4.7 28 10-37 50-77 (86)
17 3pt8_A Hemoglobin II; oxygen c 62.5 12 0.00042 20.9 3.9 25 19-43 2-36 (152)
18 1wh6_A CUT-like 2, homeobox pr 56.8 7 0.00024 21.6 2.0 14 34-47 69-82 (101)
19 3pt8_B Hemoglobin III; oxygen 56.5 18 0.00062 20.2 3.9 25 19-43 2-36 (152)
20 1wh8_A CUT-like 2, homeobox pr 55.7 7.4 0.00025 21.9 2.0 14 34-47 79-92 (111)
21 1x9f_C Erythrocruorin, globin 52.0 15 0.00053 20.6 3.1 15 29-43 31-45 (153)
22 2o4a_A DNA-binding protein SAT 50.9 10 0.00035 20.7 2.0 13 34-46 59-71 (93)
23 1yhu_C Hemoglobin B1A chain; g 50.3 13 0.00044 20.8 2.6 15 29-43 28-42 (148)
24 2zs0_C Extracellular giant hem 49.7 12 0.00042 20.9 2.4 14 30-43 28-41 (147)
25 1x9f_A Globin IV, extracellula 49.6 12 0.00042 21.1 2.4 14 30-43 31-44 (151)
26 2vyw_A Hemoglobin; trematode, 49.2 28 0.00096 19.5 3.9 15 29-43 24-38 (148)
27 1yhu_D Hemoglobin B2 chain; gl 48.4 13 0.00045 20.8 2.4 14 30-43 28-41 (149)
28 1gvn_A Epsilon; postsegregatio 46.8 32 0.0011 18.7 3.6 20 28-47 12-31 (90)
29 3ny5_A Serine/threonine-protei 46.6 9 0.00031 21.2 1.4 15 26-40 33-47 (96)
30 1wiz_A DNA-binding protein SAT 44.5 9.9 0.00034 21.1 1.3 13 34-46 69-81 (101)
31 4e0h_A Mitochondrial FAD-linke 44.3 24 0.00082 19.1 3.0 26 29-59 67-92 (106)
32 3g46_A Globin-1; oxygen transp 43.6 36 0.0012 18.9 3.8 14 30-43 29-42 (146)
33 4b4y_A Neuroglobin; transport 43.2 39 0.0013 18.9 3.9 25 19-43 7-41 (154)
34 2wtg_A Globin-like protein; me 43.1 21 0.00072 20.7 2.7 16 28-43 25-40 (159)
35 1c1y_B Proto-onkogene serine/t 43.0 12 0.00043 19.8 1.6 11 28-38 23-33 (77)
36 2w72_B Human hemoglobin A; iro 42.8 31 0.0011 19.1 3.4 13 31-43 21-33 (146)
37 4e6f_A Uncharacterized protein 42.1 24 0.00081 21.6 2.9 19 35-53 39-57 (181)
38 3u5s_A FAD-linked sulfhydryl o 40.7 28 0.00097 19.6 3.0 26 29-59 83-108 (126)
39 1jf3_A Monomer hemoglobin comp 39.7 47 0.0016 18.2 3.9 14 30-43 23-36 (147)
40 1x46_A Globin chain, hemoglobi 39.7 28 0.00096 19.3 2.9 24 20-43 6-35 (150)
41 2zs0_D Extracellular giant hem 39.0 23 0.00077 20.0 2.4 14 30-43 28-41 (145)
42 1x9f_D Globin C, hemoglobin ch 38.9 28 0.00095 19.1 2.7 14 30-43 24-37 (140)
43 4hrt_A Globin-2 A chain; oxyge 38.7 50 0.0017 18.4 3.9 13 31-43 31-43 (150)
44 3j20_K 30S ribosomal protein S 37.7 23 0.00078 20.5 2.2 17 23-39 72-88 (135)
45 1x9f_B Erythrocruorin, globin 37.3 30 0.001 19.1 2.7 14 30-43 26-39 (145)
46 2zs0_B Extracellular giant hem 36.8 26 0.00089 19.3 2.4 14 30-43 24-37 (142)
47 2zs0_A Extracellular giant hem 36.8 26 0.00089 19.3 2.4 14 30-43 24-37 (140)
48 1yhu_A Hemoglobin A1 chain; gl 36.2 27 0.00091 19.5 2.4 14 30-43 24-37 (145)
49 1yse_A DNA-binding protein SAT 36.1 22 0.00076 20.8 2.0 13 34-46 73-85 (141)
50 2ygg_A Sodium/hydrogen exchang 36.1 46 0.0016 17.3 3.1 20 20-39 3-22 (70)
51 2vqe_I 30S ribosomal protein S 35.9 31 0.0011 19.8 2.6 17 23-39 71-87 (128)
52 3u5c_Q RP61R, 40S ribosomal pr 35.8 30 0.001 20.2 2.6 17 23-39 75-91 (143)
53 2l05_A Serine/threonine-protei 35.6 19 0.00064 19.8 1.6 13 26-38 37-49 (95)
54 1ash_A Hemoglobin (OXY); oxyge 34.9 34 0.0012 19.7 2.7 17 28-44 21-37 (150)
55 1yhu_B Giant hemoglobins B cha 34.8 29 0.001 19.0 2.4 14 30-43 26-39 (144)
56 1xq5_A Hemoglobin alpha-1 chai 34.7 59 0.002 17.9 3.9 14 30-43 22-35 (143)
57 2xzm_I RPS16E; ribosome, trans 33.9 34 0.0012 20.0 2.6 17 23-39 77-93 (145)
58 2zkq_i 40S ribosomal protein S 33.8 34 0.0012 20.0 2.6 17 23-39 78-94 (146)
59 1h97_A Globin-3; HET: HEM; 1.1 33.4 41 0.0014 18.8 2.9 15 29-43 23-37 (147)
60 3qsv_A SMAD4, mothers against 33.1 9.3 0.00032 22.2 0.1 15 30-44 79-93 (132)
61 1mba_A Myoglobin; oxygen stora 33.0 43 0.0015 18.4 2.9 14 30-43 22-35 (147)
62 1ith_A Hemoglobin (cyano Met); 32.9 33 0.0011 18.8 2.4 14 30-43 22-35 (141)
63 1ozj_A SMAD 3; MAD homology do 32.8 9.5 0.00033 22.5 0.1 15 30-44 80-94 (144)
64 1b0b_A Hemoglobin; hemoprotein 32.6 47 0.0016 18.2 3.0 23 29-51 20-45 (142)
65 2d5v_A Hepatocyte nuclear fact 32.5 25 0.00085 20.2 1.9 13 35-47 56-68 (164)
66 1wxm_A A-RAF proto-oncogene se 32.3 21 0.00071 19.3 1.4 11 28-38 29-39 (86)
67 3bom_A Hemoglobin subunit alph 31.9 67 0.0023 17.7 3.9 14 30-43 22-35 (143)
68 1rrb_A RAF-1 RBD, RAF proto-on 31.5 24 0.00081 19.8 1.6 12 27-38 39-50 (107)
69 2r80_B Hemoglobin subunit beta 31.2 36 0.0012 18.9 2.4 14 30-43 20-33 (146)
70 2wy4_A Single domain haemoglob 31.0 52 0.0018 17.7 3.0 15 29-43 19-33 (140)
71 1sct_A Hemoglobin II (carbonmo 30.3 38 0.0013 18.8 2.4 14 30-43 30-43 (150)
72 2nrl_A Myoglobin; transport pr 30.3 38 0.0013 18.8 2.4 15 29-43 17-31 (147)
73 2dc3_A Cytoglobin; myoglobin, 30.1 79 0.0027 18.5 3.9 26 18-43 19-54 (193)
74 3ubc_A Hemoglobin-like flavopr 29.5 41 0.0014 18.1 2.4 14 30-43 20-33 (131)
75 2vhb_A Hemoglobin; heme, respi 29.4 43 0.0015 18.3 2.5 15 29-43 20-34 (146)
76 1q1f_A Neuroglobin; globin fol 29.4 41 0.0014 18.4 2.4 15 29-43 19-33 (151)
77 1hlb_A Hemoglobin (deoxy); oxy 29.3 77 0.0026 17.6 3.9 24 20-43 12-45 (158)
78 2lhb_A Hemoglobin V (cyano Met 29.0 55 0.0019 18.1 2.9 23 21-43 11-43 (149)
79 3mkb_B Hemoglobin subunit beta 28.1 83 0.0028 17.5 3.9 13 31-43 21-33 (136)
80 4hrt_B Hemoglobin B chain; oxy 27.9 44 0.0015 18.6 2.4 14 30-43 32-45 (152)
81 1out_B Hemoglobin I; heme, oxy 27.8 45 0.0015 18.6 2.4 14 30-43 20-33 (146)
82 1v4x_B Hemoglobin beta chain; 27.8 45 0.0015 18.5 2.4 14 30-43 20-33 (146)
83 2r80_A Hemoglobin subunit alph 27.7 41 0.0014 18.6 2.2 14 30-43 21-34 (141)
84 3agt_A Hemerythrin-like domain 27.4 73 0.0025 17.4 3.2 20 32-51 102-121 (136)
85 1wmu_A Hemoglobin D alpha chai 27.3 43 0.0015 18.4 2.2 14 30-43 21-34 (141)
86 3bom_B Hemoglobin subunit beta 27.2 47 0.0016 18.5 2.4 14 30-43 20-33 (147)
87 1cg5_A Protein (hemoglobin); o 27.0 63 0.0021 17.8 2.9 14 30-43 21-34 (141)
88 3kmp_A SMAD1-MH1; protein-DNA 27.0 14 0.00047 21.2 0.1 15 30-44 72-86 (124)
89 1ex2_A Protein MAF; structural 27.0 71 0.0024 19.1 3.3 25 10-34 73-97 (189)
90 1bin_A Leghemoglobin A; heme, 26.5 45 0.0015 18.0 2.2 22 30-51 22-46 (143)
91 1jeb_A Hemoglobin zeta chain; 26.5 45 0.0015 18.3 2.2 13 31-43 23-35 (142)
92 2b19_A Neuropeptide K, NPK; he 26.4 32 0.0011 15.3 1.2 11 30-40 9-19 (36)
93 2xki_A Neural hemoglobin; oxyg 26.3 47 0.0016 17.7 2.2 10 34-43 8-17 (110)
94 1sct_B Hemoglobin II (carbonmo 26.1 46 0.0016 18.4 2.2 21 30-50 31-54 (151)
95 2aa1_B Hemoglobin beta-C chain 26.1 50 0.0017 18.4 2.4 14 30-43 20-33 (146)
96 4e0i_A Mitochondrial FAD-linke 25.3 68 0.0023 19.3 3.0 25 29-58 150-174 (189)
97 1gdj_A Leghemoglobin (deoxy); 25.2 49 0.0017 18.2 2.2 14 30-43 22-35 (153)
98 3d1k_B Hemoglobin subunit beta 25.2 53 0.0018 18.2 2.4 14 30-43 20-33 (146)
99 3d1k_A Hemoglobin subunit alph 25.0 50 0.0017 18.2 2.2 14 30-43 21-34 (142)
100 2w72_C Human hemoglobin A; iro 25.0 50 0.0017 18.1 2.2 14 30-43 21-34 (141)
101 2amh_A Septum formation protei 25.0 77 0.0026 19.3 3.2 25 10-34 92-116 (207)
102 2bk9_A CG9734-PA; oxygen trans 24.5 56 0.0019 18.1 2.4 14 30-43 20-33 (153)
103 1it2_A Hemoglobin; hagfish, de 24.5 56 0.0019 18.1 2.4 14 30-43 30-43 (146)
104 2c0k_A Hemoglobin; oxygen tran 24.5 51 0.0017 18.3 2.2 14 30-43 20-33 (151)
105 2p5x_A ASMTL, N-acetylserotoni 24.4 82 0.0028 19.5 3.3 24 10-33 82-105 (230)
106 3mvc_A Globin protein 6; oxyge 24.1 1.1E+02 0.0036 17.4 3.9 12 32-43 25-36 (161)
107 2cly_A ATP synthase B chain, m 24.0 41 0.0014 20.9 1.8 17 40-56 172-188 (214)
108 2oif_A Horvu GLB1, non-legume 24.0 53 0.0018 18.2 2.2 14 30-43 29-42 (162)
109 1gcv_B Hemoglobin; oxygen stor 24.0 59 0.002 18.0 2.4 14 30-43 20-33 (136)
110 1out_A Hemoglobin I; heme, oxy 23.9 54 0.0018 18.2 2.2 14 30-43 22-35 (143)
111 1spg_A Hemoglobin; carbon mono 23.6 55 0.0019 18.2 2.2 14 30-43 22-35 (144)
112 1a6m_A Myoglobin; heme protein 23.4 55 0.0019 18.2 2.2 14 30-43 21-34 (151)
113 1cg5_B Protein (hemoglobin); o 23.4 60 0.0021 18.0 2.4 14 30-43 20-33 (141)
114 3r8n_I 30S ribosomal protein S 23.0 31 0.001 19.8 1.0 17 23-39 70-86 (127)
115 1eca_A Erythrocruorin (AQUO Me 22.8 1E+02 0.0035 16.8 3.3 22 22-43 2-29 (136)
116 1x3k_A Hemoglobin component V; 22.6 58 0.002 18.2 2.2 13 31-43 25-37 (152)
117 1lhs_A Myoglobin; oxygen stora 22.4 65 0.0022 18.0 2.4 14 30-43 21-34 (153)
118 2eo2_A Adult MALE hypothalamus 22.2 37 0.0013 17.7 1.2 7 35-41 13-19 (71)
119 3bbn_I Ribosomal protein S9; s 20.6 51 0.0017 20.3 1.7 17 23-39 140-156 (197)
120 1c7c_A Protein (deoxyhemoglobi 20.5 1.4E+02 0.0049 18.3 3.9 14 30-43 21-34 (283)
121 3qu3_A IRF-7, interferon regul 20.4 42 0.0014 19.5 1.3 15 40-54 14-28 (137)
122 3mkb_A Hemoglobin subunit alph 20.3 70 0.0024 17.8 2.2 14 30-43 21-34 (140)
No 1
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.77 E-value=4e-19 Score=127.44 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=54.1
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|++|++.++||.+.++++++||.++||||||+||+|||+|||.+||.+|..+.
T Consensus 371 L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~ 427 (795)
T 1w7j_A 371 MAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV 427 (795)
T ss_dssp HHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 457899999999999999999999999999999999999999999999999998764
No 2
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.75 E-value=1e-18 Score=125.19 Aligned_cols=57 Identities=39% Similarity=0.635 Sum_probs=53.6
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|++|++.+++|.+.++++++||.++||||||+||+|||+|||.+||.+|..++
T Consensus 389 L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~ 445 (770)
T 1w9i_A 389 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQER 445 (770)
T ss_dssp HHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999999999999999999999998653
No 3
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.74 E-value=5.5e-19 Score=125.43 Aligned_cols=57 Identities=28% Similarity=0.539 Sum_probs=47.9
Q ss_pred CccccccceEEeC----ceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVG----RDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~----~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++|++|++.++ ||.+.++++++||.++||||||+||+|||+|||.+||.+|..+.
T Consensus 316 L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~ 376 (697)
T 1lkx_A 316 LSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT 376 (697)
T ss_dssp HHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4578999999999 99999999999999999999999999999999999999998654
No 4
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.74 E-value=9.2e-19 Score=126.09 Aligned_cols=56 Identities=52% Similarity=0.873 Sum_probs=49.2
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++||+|++.+|+|.+.++++++||.++||||||+||+|||+|||.+||.+|..+
T Consensus 394 L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~ 449 (837)
T 1kk8_A 394 LLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK 449 (837)
T ss_dssp HHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999999999999999999854
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.74 E-value=5.9e-19 Score=126.50 Aligned_cols=57 Identities=49% Similarity=0.852 Sum_probs=47.8
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++||+|++.+|+|.+.++++++||.++||||||+||+|||+|||.+||.+|..+.
T Consensus 395 L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~ 451 (783)
T 4db1_A 395 LLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQ 451 (783)
T ss_dssp HHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457899999999999999999999999999999999999999999999999998753
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.73 E-value=1.6e-18 Score=127.00 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=50.1
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++||++++.++||.+.+|++++||.++||||||+||+|||+|||.+||.+|.++.
T Consensus 371 L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~ 427 (1080)
T 2dfs_A 371 MAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV 427 (1080)
T ss_dssp HHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 457899999999999999999999999999999999999999999999999998765
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.73 E-value=2e-18 Score=125.84 Aligned_cols=57 Identities=63% Similarity=1.053 Sum_probs=53.8
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++||++++.+|+|.+.++++++||.++||||||+||+|||+|||.+||.+|..+.
T Consensus 366 L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~ 422 (995)
T 2ycu_A 366 FSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSP 422 (995)
T ss_dssp HHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999999999999999999999998654
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.72 E-value=3.1e-18 Score=125.05 Aligned_cols=57 Identities=39% Similarity=0.644 Sum_probs=53.6
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIM 57 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~ 57 (60)
|.++||++++.+|+|.+.++++++||.++||||||+||+|||+|||.+||.+|..+.
T Consensus 389 L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~ 445 (1010)
T 1g8x_A 389 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER 445 (1010)
T ss_dssp HHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999999999999999999999998653
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.71 E-value=3.6e-18 Score=122.39 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=46.5
Q ss_pred CccccccceEE-----eCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIK-----VGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~-----~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++|++|++. ++||.+.++++++||.++||||||+||+|||+|||.+||.+|...
T Consensus 382 L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~ 442 (784)
T 2v26_A 382 LRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE 442 (784)
T ss_dssp HHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45789998887 679999999999999999999999999999999999999999754
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.70 E-value=4.8e-18 Score=124.70 Aligned_cols=56 Identities=57% Similarity=1.030 Sum_probs=52.0
Q ss_pred CccccccceEEeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17851 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTI 56 (60)
Q Consensus 1 l~~aL~~~~i~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~ 56 (60)
|.++||++++.+|+|.+.++++++||.++||||||+||+|||+|||.+||.+|.++
T Consensus 397 l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~ 452 (1184)
T 1i84_S 397 FTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKT 452 (1184)
T ss_dssp HHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--
T ss_pred HHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 45789999999999999999999999999999999999999999999999999864
No 11
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.65 E-value=6.7e-17 Score=118.53 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=43.7
Q ss_pred ccccccceE-----EeCceEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 2 TKAFLKPRI-----KVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 2 ~~aL~~~~i-----~~~~e~~~~~~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
.++|+++.+ .++||.+.++++++||.++||||||+||+|||+|||.+||.+|..+..
T Consensus 387 ~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~~~ 448 (1052)
T 4anj_A 387 RVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 448 (1052)
T ss_dssp HHHHHEEC-------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred HHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 456666655 468999999999999999999999999999999999999999987543
No 12
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=70.23 E-value=2.6 Score=19.88 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17851 21 QTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55 (60)
Q Consensus 21 ~~~~~a~~~rdalaK~lY~rLF~wiV~~IN~~l~~ 55 (60)
+.+..+......+--.+|.|+|+.+..-|-.....
T Consensus 4 L~Vkr~~~~~~t~~e~ih~~~~dhlmaGiEdi~G~ 38 (43)
T 2bec_B 4 LAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGH 38 (43)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeeccccccccHHHHHhhhhhhhhhhchHhhcCC
Confidence 44455555566788999999999999888765443
No 13
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=65.78 E-value=11 Score=19.03 Aligned_cols=28 Identities=0% Similarity=-0.140 Sum_probs=24.6
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAISKAC 37 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdalaK~l 37 (60)
....|..++.-|+.+.|..-|++|++.+
T Consensus 25 F~ldG~~YeIDLs~~nA~~lr~~L~~yi 52 (61)
T 4e1p_A 25 FGLDGVTYEIDLSTKNATKLRGDLKQWV 52 (61)
T ss_dssp EEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEEECCHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999865
No 14
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=64.96 E-value=4.1 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 33 ISKACYERMFRWLV 46 (60)
Q Consensus 33 laK~lY~rLF~wiV 46 (60)
-.|.+|-||++|+-
T Consensus 68 ~Gre~yiRM~nWL~ 81 (101)
T 1x2l_A 68 KGKEPFIKMKQFLS 81 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcc
Confidence 46899999999985
No 15
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=63.70 E-value=9.7 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFRWLVNRI 49 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~~I 49 (60)
++|+++..||..|++=++.-|
T Consensus 7 t~~~~s~~Iy~nLl~~~i~dI 27 (99)
T 3mhs_C 7 TIDSISNGILNNLLTTLIQDI 27 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999887655
No 16
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=62.71 E-value=16 Score=19.75 Aligned_cols=28 Identities=0% Similarity=-0.140 Sum_probs=24.6
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAISKAC 37 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdalaK~l 37 (60)
....|..++.-|+.+.|..-|++|++.+
T Consensus 50 FsLDGv~YEIDLS~~NA~kLR~aLapyI 77 (86)
T 4e1r_A 50 FGLDGVTYEIDLSTKNATKLRGDLKQWV 77 (86)
T ss_dssp EEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEEECCHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999865
No 17
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=62.52 E-value=12 Score=20.89 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.3
Q ss_pred eeCCHHHHHHHHH----------HHHHHHHHHHHH
Q psy17851 19 KSQTKEQVEFAVE----------AISKACYERMFR 43 (60)
Q Consensus 19 ~~~~~~~a~~~rd----------alaK~lY~rLF~ 43 (60)
+++|.+|-...++ .++..+|.|||.
T Consensus 2 ~~Lt~~~~~~i~~sw~~v~~~~~~~g~~~y~rlF~ 36 (152)
T 3pt8_A 2 TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFK 36 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566666555544 455568999986
No 18
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=56.77 E-value=7 Score=21.64 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 34 SKACYERMFRWLVN 47 (60)
Q Consensus 34 aK~lY~rLF~wiV~ 47 (60)
.|.+|-||++|+-.
T Consensus 69 Gre~fiRM~nWL~l 82 (101)
T 1wh6_A 69 GREPFIRMQLWLSD 82 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCC
Confidence 48899999999975
No 19
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=56.47 E-value=18 Score=20.17 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.9
Q ss_pred eeCCHHHHHHHHH----------HHHHHHHHHHHH
Q psy17851 19 KSQTKEQVEFAVE----------AISKACYERMFR 43 (60)
Q Consensus 19 ~~~~~~~a~~~rd----------alaK~lY~rLF~ 43 (60)
+++|.+|-...++ .+...+|.|||.
T Consensus 2 ~~Ls~~~~~~i~~sw~~v~~~~~~~g~~~y~~lF~ 36 (152)
T 3pt8_B 2 SGLTGPQKAALKSSWSRFMNNAVTNGTNFYMDLFK 36 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCHHhHHHHHHHHHHH
Confidence 3556666554444 455668999986
No 20
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=55.73 E-value=7.4 Score=21.94 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 34 SKACYERMFRWLVN 47 (60)
Q Consensus 34 aK~lY~rLF~wiV~ 47 (60)
.|.+|-||++|+-.
T Consensus 79 GRe~yiRM~nWL~l 92 (111)
T 1wh8_A 79 GREPFVRMQLWLND 92 (111)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhcC
Confidence 48999999999853
No 21
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=51.98 E-value=15 Score=20.62 Aligned_cols=15 Identities=0% Similarity=0.058 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
.|+.++..+|.|||.
T Consensus 31 ~~~~~g~~~y~rlF~ 45 (153)
T 1x9f_C 31 IKIGFGRLLLTKLAK 45 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368889999999996
No 22
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=50.93 E-value=10 Score=20.70 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy17851 34 SKACYERMFRWLV 46 (60)
Q Consensus 34 aK~lY~rLF~wiV 46 (60)
.|..|-||++||-
T Consensus 59 Gre~f~rM~nWL~ 71 (93)
T 2o4a_A 59 LLVNLRAMQNFLQ 71 (93)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 3788999999984
No 23
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=50.34 E-value=13 Score=20.83 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
.|+.+...+|.|||.
T Consensus 28 ~~~~~g~~~y~rlF~ 42 (148)
T 1yhu_C 28 SRVSAGEEVFAALFK 42 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 468899999999996
No 24
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=49.68 E-value=12 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
|+.++..+|.|||.
T Consensus 28 ~~~~g~~~~~rlF~ 41 (147)
T 2zs0_C 28 RVALAQAVFASLFS 41 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68888999999996
No 25
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=49.64 E-value=12 Score=21.09 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
|+.+...+|.|||.
T Consensus 31 ~~~~g~~~~~rlF~ 44 (151)
T 1x9f_A 31 RVAIVRAVFDDLFK 44 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68889999999996
No 26
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=49.16 E-value=28 Score=19.54 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
.++.+...+|.|||.
T Consensus 24 ~~~~~g~~~~~rlF~ 38 (148)
T 2vyw_A 24 HITEMGVSIYKTLFA 38 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456789999999996
No 27
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=48.36 E-value=13 Score=20.81 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
|+.+...+|.|||.
T Consensus 28 ~~~~g~~~y~rlF~ 41 (149)
T 1yhu_D 28 RIAIAQAVFKDLFA 41 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68888999999996
No 28
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=46.80 E-value=32 Score=18.71 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17851 28 FAVEAISKACYERMFRWLVN 47 (60)
Q Consensus 28 ~~rdalaK~lY~rLF~wiV~ 47 (60)
..-.-++.++|+|+-+++++
T Consensus 12 EilnEfs~~vy~rvln~Vln 31 (90)
T 1gvn_A 12 EIINELSASVYNRVLNYVLN 31 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35677999999999999986
No 29
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=46.62 E-value=9 Score=21.16 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 26 VEFAVEAISKACYER 40 (60)
Q Consensus 26 a~~~rdalaK~lY~r 40 (60)
....||||+|+|.-|
T Consensus 33 G~tlrdaL~KaLk~R 47 (96)
T 3ny5_A 33 GVTVRDSLKKALMMR 47 (96)
T ss_dssp TCBHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHc
Confidence 345799999999754
No 30
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=44.46 E-value=9.9 Score=21.10 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy17851 34 SKACYERMFRWLV 46 (60)
Q Consensus 34 aK~lY~rLF~wiV 46 (60)
.|..|-||++||-
T Consensus 69 Gre~f~RM~nWL~ 81 (101)
T 1wiz_A 69 LLVNLRAMQNFLN 81 (101)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 3788999999974
No 31
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=44.34 E-value=24 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy17851 29 AVEAISKACYERMFRWLVNRINRSLDTIMCA 59 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~ 59 (60)
.|+++.+=||. +=+.||..|..+..+
T Consensus 67 sr~~l~~Wl~~-----~HN~VN~rLgKp~f~ 92 (106)
T 4e0h_A 67 SREELGRWMCE-----AHNKVNKKLRKPKFD 92 (106)
T ss_dssp SHHHHHHHHHH-----HHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHH-----HHHHHHHHcCCCCCC
Confidence 46666666655 667999999877544
No 32
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=43.59 E-value=36 Score=18.89 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 29 ~~~~g~~~~~rlF~ 42 (146)
T 3g46_A 29 KKGNGVALMTTLFA 42 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566679999997
No 33
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=43.18 E-value=39 Score=18.88 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=16.5
Q ss_pred eeCCHHHHHHHH----------HHHHHHHHHHHHH
Q psy17851 19 KSQTKEQVEFAV----------EAISKACYERMFR 43 (60)
Q Consensus 19 ~~~~~~~a~~~r----------dalaK~lY~rLF~ 43 (60)
.++|.+|-...+ +.+...+|.|||.
T Consensus 7 m~Ls~~~~~~I~~sw~~v~~~~~~~g~~~y~rlF~ 41 (154)
T 4b4y_A 7 MQVSEEQQSLIMEDVQVLLPNYDDFVEDVLQQFME 41 (154)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 356666655444 4556678999996
No 34
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=43.07 E-value=21 Score=20.73 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17851 28 FAVEAISKACYERMFR 43 (60)
Q Consensus 28 ~~rdalaK~lY~rLF~ 43 (60)
..++.++..+|.+||.
T Consensus 25 ~~~~~~g~~fy~~LF~ 40 (159)
T 2wtg_A 25 AQNIENGNAFYRYFFT 40 (159)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3678899999999997
No 35
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=42.99 E-value=12 Score=19.76 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=9.1
Q ss_pred HHHHHHHHHHH
Q psy17851 28 FAVEAISKACY 38 (60)
Q Consensus 28 ~~rdalaK~lY 38 (60)
..||||+|+|=
T Consensus 23 tlrdaL~KaLk 33 (77)
T 1c1y_B 23 SLHDCLMKALK 33 (77)
T ss_dssp BHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 47999999983
No 36
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=42.76 E-value=31 Score=19.14 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFR 43 (60)
Q Consensus 31 dalaK~lY~rLF~ 43 (60)
+.++..+|.|||.
T Consensus 21 ~~~g~~~~~rlF~ 33 (146)
T 2w72_B 21 DEVGGEAYGRLLV 33 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667799999996
No 37
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=42.12 E-value=24 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy17851 35 KACYERMFRWLVNRINRSL 53 (60)
Q Consensus 35 K~lY~rLF~wiV~~IN~~l 53 (60)
..||.++..|+..+.+..-
T Consensus 39 ~qIYd~~~~wl~~~~~~~~ 57 (181)
T 4e6f_A 39 AQIYDTMTKWMDERLKENK 57 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 5699999999999877653
No 38
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=40.71 E-value=28 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy17851 29 AVEAISKACYERMFRWLVNRINRSLDTIMCA 59 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~ 59 (60)
.|++|.+=||. +=+.||..|..+..+
T Consensus 83 SR~~l~~Wl~~-----~HN~VN~rLgKp~fd 108 (126)
T 3u5s_A 83 TRAAFTQWLXH-----LHNEVNRKLGKPDFD 108 (126)
T ss_dssp SHHHHHHHHHH-----HHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHH-----HHHHHHHHcCCCCCC
Confidence 57777777776 678999999887654
No 39
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=39.74 E-value=47 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 23 ~~~~g~~~y~rlf~ 36 (147)
T 1jf3_A 23 GAGVGKECLSKFIS 36 (147)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677789999995
No 40
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=39.72 E-value=28 Score=19.30 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.3
Q ss_pred eCCHHHHHHHHHHHHH------HHHHHHHH
Q psy17851 20 SQTKEQVEFAVEAISK------ACYERMFR 43 (60)
Q Consensus 20 ~~~~~~a~~~rdalaK------~lY~rLF~ 43 (60)
.+|.+|....+++..+ .+|.|||.
T Consensus 6 ~Ls~~~~~~v~~sw~~v~~~~~~~~~rlF~ 35 (150)
T 1x46_A 6 DMEAGDIALVKSSWAQIHDKEVDILYNFFK 35 (150)
T ss_dssp CCCHHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888776 49999996
No 41
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=39.00 E-value=23 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
|+.+...+|.|||.
T Consensus 28 ~~~~g~~~~~rlF~ 41 (145)
T 2zs0_D 28 ESAIGVAIFDVFFT 41 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57788889999996
No 42
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=38.90 E-value=28 Score=19.12 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
++.+...+|.|||.
T Consensus 24 ~~~~g~~~~~~lF~ 37 (140)
T 1x9f_D 24 RVAFGLELWRDIID 37 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77889999999996
No 43
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=38.71 E-value=50 Score=18.41 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFR 43 (60)
Q Consensus 31 dalaK~lY~rLF~ 43 (60)
+.+...+|.|||.
T Consensus 31 ~~~g~~~~~rlF~ 43 (150)
T 4hrt_A 31 EATGLMLMSNLFT 43 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556679999997
No 44
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.73 E-value=23 Score=20.52 Aligned_cols=17 Identities=41% Similarity=0.274 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 72 ~gQA~AiR~aIarAL~~ 88 (135)
T 3j20_K 72 MGQAEAARMAIARALVE 88 (135)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred echHhHHHHHHHHHHHH
Confidence 46999999999999943
No 45
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=37.29 E-value=30 Score=19.13 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
++.++..+|.|||.
T Consensus 26 ~~~~g~~~y~rlF~ 39 (145)
T 1x9f_B 26 REAFSQAIWRATFA 39 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788889999996
No 46
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=36.80 E-value=26 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
++.+...+|.|||.
T Consensus 24 ~~~~g~~~~~rlF~ 37 (142)
T 2zs0_B 24 RELLGNRIWEDLFA 37 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888889999996
No 47
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=36.76 E-value=26 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
++.+...+|.|||.
T Consensus 24 ~~~~g~~~y~rlF~ 37 (140)
T 2zs0_A 24 RAAFSRDLFSELFN 37 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888899999996
No 48
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=36.24 E-value=27 Score=19.49 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
++.+...+|.|||.
T Consensus 24 ~~~~g~~~~~rlF~ 37 (145)
T 1yhu_A 24 RSKFGDALWRNVFN 37 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78889999999996
No 49
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=36.15 E-value=22 Score=20.84 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q psy17851 34 SKACYERMFRWLV 46 (60)
Q Consensus 34 aK~lY~rLF~wiV 46 (60)
.|..|-||++||-
T Consensus 73 GRE~fiRM~NWL~ 85 (141)
T 1yse_A 73 LLVNLRAMQNFLQ 85 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3789999999986
No 50
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=36.11 E-value=46 Score=17.26 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=17.8
Q ss_pred eCCHHHHHHHHHHHHHHHHH
Q psy17851 20 SQTKEQVEFAVEAISKACYE 39 (60)
Q Consensus 20 ~~~~~~a~~~rdalaK~lY~ 39 (60)
.+++++-.+.|+-|++.||.
T Consensus 3 ~ls~~~~e~ir~IL~~NLyk 22 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQK 22 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 37888999999999999996
No 51
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=35.90 E-value=31 Score=19.80 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 71 sgQA~AiR~gIarAL~~ 87 (128)
T 2vqe_I 71 SGQIDAIKLGIARALVQ 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 56899999999999954
No 52
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=35.82 E-value=30 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 75 sgQA~AiR~aIArAL~~ 91 (143)
T 3u5c_Q 75 VSQVYAIRQAIAKGLVA 91 (143)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ecHHhHHHHHHHHHHHH
Confidence 46999999999999954
No 53
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=35.61 E-value=19 Score=19.84 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q psy17851 26 VEFAVEAISKACY 38 (60)
Q Consensus 26 a~~~rdalaK~lY 38 (60)
....||||+|+|=
T Consensus 37 G~tlrdAL~KaLk 49 (95)
T 2l05_A 37 GVTVRDSLKKALM 49 (95)
T ss_dssp TCBHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 3457999999984
No 54
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=34.89 E-value=34 Score=19.74 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 28 FAVEAISKACYERMFRW 44 (60)
Q Consensus 28 ~~rdalaK~lY~rLF~w 44 (60)
..+...+..+|.+||.-
T Consensus 21 ~~~~~~g~~fy~~LF~~ 37 (150)
T 1ash_A 21 NEARQDGIDLYKHMFEN 37 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 36788999999999973
No 55
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=34.83 E-value=29 Score=19.04 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 26 ~~~~g~~~~~~lF~ 39 (144)
T 1yhu_B 26 REEFGHFIWSHVFQ 39 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788899999996
No 56
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=34.74 E-value=59 Score=17.90 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (143)
T 1xq5_A 22 AEEIGSDALSRMLA 35 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677799999996
No 57
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=33.90 E-value=34 Score=20.04 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 77 sgQA~AiR~aIArAL~~ 93 (145)
T 2xzm_I 77 TSQVYAIRQALSKGIVA 93 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHH
Confidence 46899999999999955
No 58
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.77 E-value=34 Score=20.04 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 78 sgQA~AiR~aIArAL~~ 94 (146)
T 2zkq_i 78 VAQIYAIRQSISKALVA 94 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 46999999999999954
No 59
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=33.41 E-value=41 Score=18.78 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.+...+|.|||.
T Consensus 23 ~~~~~g~~~~~rlF~ 37 (147)
T 1h97_A 23 HIVETGLGAYHALFT 37 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 566788999999996
No 60
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=33.11 E-value=9.3 Score=22.18 Aligned_cols=15 Identities=27% Similarity=0.855 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFRW 44 (60)
Q Consensus 30 rdalaK~lY~rLF~w 44 (60)
|..+.--||.|||.|
T Consensus 79 rk~~PHvi~cRlwRW 93 (132)
T 3qsv_A 79 RKGFPHVIYARLWRW 93 (132)
T ss_dssp EEECHHHHHHHHHTC
T ss_pred cccCcceeEEEEecC
Confidence 555677899999998
No 61
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=33.05 E-value=43 Score=18.40 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (147)
T 1mba_A 22 KNANGLDFLVALFE 35 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 46788889999996
No 62
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=32.95 E-value=33 Score=18.84 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (141)
T 1ith_A 22 LQAAADSIFFKYLT 35 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 56677789999996
No 63
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=32.78 E-value=9.5 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.829 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFRW 44 (60)
Q Consensus 30 rdalaK~lY~rLF~w 44 (60)
|..+.--||.|||.|
T Consensus 80 rk~~PHVi~cRlwRW 94 (144)
T 1ozj_A 80 RKGLPHVIYCRLWRW 94 (144)
T ss_dssp EEECHHHHHHHHHTC
T ss_pred ccCCCeeEEEEeeeC
Confidence 445566799999998
No 64
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=32.64 E-value=47 Score=18.16 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHhh
Q psy17851 29 AVEAISKACYERMFR---WLVNRINR 51 (60)
Q Consensus 29 ~rdalaK~lY~rLF~---wiV~~IN~ 51 (60)
..+.+...+|.|||. |+-...|.
T Consensus 20 ~~~~~g~~~~~rlF~~~P~~~~~F~~ 45 (142)
T 1b0b_A 20 AWGTAGPEFFMALFDAHDDVFAKFSG 45 (142)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHTTTT
T ss_pred cHHhHHHHHHHHHHHhCchHHHHhHH
Confidence 346788899999996 45444443
No 65
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=32.49 E-value=25 Score=20.19 Aligned_cols=13 Identities=31% Similarity=1.040 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy17851 35 KACYERMFRWLVN 47 (60)
Q Consensus 35 K~lY~rLF~wiV~ 47 (60)
+..|-+||.|+..
T Consensus 56 ~~~y~rm~~WL~~ 68 (164)
T 2d5v_A 56 RETFRRMWKWLQE 68 (164)
T ss_dssp HHHHHHHHHHHHS
T ss_pred chHHHHHHHHHhc
Confidence 5789999999854
No 66
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.32 E-value=21 Score=19.29 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.9
Q ss_pred HHHHHHHHHHH
Q psy17851 28 FAVEAISKACY 38 (60)
Q Consensus 28 ~~rdalaK~lY 38 (60)
..||||+|+|=
T Consensus 29 tlrdaL~KaLk 39 (86)
T 1wxm_A 29 SVYDSLDKALK 39 (86)
T ss_dssp BSHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46899999983
No 67
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=31.89 E-value=67 Score=17.66 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (143)
T 3bom_A 22 SDEIGEQALSRMLV 35 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666789999996
No 68
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=31.48 E-value=24 Score=19.83 Aligned_cols=12 Identities=17% Similarity=-0.036 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy17851 27 EFAVEAISKACY 38 (60)
Q Consensus 27 ~~~rdalaK~lY 38 (60)
...||||+|+|=
T Consensus 39 ~tlrdaL~KaLk 50 (107)
T 1rrb_A 39 MSLHDCLMKALK 50 (107)
T ss_dssp CBHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 357999999984
No 69
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=31.24 E-value=36 Score=18.86 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (146)
T 2r80_B 20 VADCGAEALARLLI 33 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 46778899999996
No 70
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=31.00 E-value=52 Score=17.73 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.+....|.|||.
T Consensus 19 ~~~~~~~~fy~rlf~ 33 (140)
T 2wy4_A 19 NGEDLTNEFYKIMFN 33 (140)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 457788899999996
No 71
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=30.34 E-value=38 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 30 ~~~~g~~~~~rlF~ 43 (150)
T 1sct_A 30 IEATGLMLMSNLFT 43 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677889999996
No 72
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=30.32 E-value=38 Score=18.82 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.+...+|.|||.
T Consensus 17 ~~~~~g~~~~~rlF~ 31 (147)
T 2nrl_A 17 DYTTIGGLVLTRLFK 31 (147)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 578899999999996
No 73
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=30.05 E-value=79 Score=18.45 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=16.8
Q ss_pred EeeCCHHHHHHHH----------HHHHHHHHHHHHH
Q psy17851 18 TKSQTKEQVEFAV----------EAISKACYERMFR 43 (60)
Q Consensus 18 ~~~~~~~~a~~~r----------dalaK~lY~rLF~ 43 (60)
...++.+|-...+ +.+...+|.|||.
T Consensus 19 ~~~Ls~~e~~~V~~sW~~v~~~~~~~g~~~y~rlF~ 54 (193)
T 2dc3_A 19 SEELSEAERKAVQAMWARLYANCEDVGVAILVRFFV 54 (193)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3456777765544 4455669999996
No 74
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=29.48 E-value=41 Score=18.08 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+....|.|||.
T Consensus 20 ~~~~g~~fy~rlf~ 33 (131)
T 3ubc_A 20 KNEIGLLFYANLFK 33 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888999996
No 75
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=29.45 E-value=43 Score=18.32 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.+....|.|||.
T Consensus 20 ~~~~~~~~fy~rlf~ 34 (146)
T 2vhb_A 20 HGVTITTTFYKNLFA 34 (146)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 357788899999996
No 76
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=29.40 E-value=41 Score=18.40 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 29 AVEAISKACYERMFR 43 (60)
Q Consensus 29 ~rdalaK~lY~rLF~ 43 (60)
..+.+...+|.|||.
T Consensus 19 ~~~~~g~~~y~~lf~ 33 (151)
T 1q1f_A 19 SPLEHGTVLFARLFA 33 (151)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 467888999999995
No 77
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=29.31 E-value=77 Score=17.56 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=16.2
Q ss_pred eCCHHHHHHHHHH----------HHHHHHHHHHH
Q psy17851 20 SQTKEQVEFAVEA----------ISKACYERMFR 43 (60)
Q Consensus 20 ~~~~~~a~~~rda----------laK~lY~rLF~ 43 (60)
++|.+|-...+++ +...+|.|||.
T Consensus 12 ~lt~~~~~~i~~sw~~v~~~~~~~g~~~~~rlF~ 45 (158)
T 1hlb_A 12 DLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFA 45 (158)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5666666555544 55689999996
No 78
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=29.00 E-value=55 Score=18.11 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=15.6
Q ss_pred CCHHHHHHHH----------HHHHHHHHHHHHH
Q psy17851 21 QTKEQVEFAV----------EAISKACYERMFR 43 (60)
Q Consensus 21 ~~~~~a~~~r----------dalaK~lY~rLF~ 43 (60)
+|.+|-...+ +.++..+|.|||.
T Consensus 11 lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~ 43 (149)
T 2lhb_A 11 LSAAEKTKIRSAWAPVYSTYETSGVDILVKFFT 43 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 6666655444 4456689999996
No 79
>3mkb_B Hemoglobin subunit beta; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2
Probab=28.13 E-value=83 Score=17.51 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFR 43 (60)
Q Consensus 31 dalaK~lY~rLF~ 43 (60)
+.+...+|.|||.
T Consensus 21 ~~~g~~~l~rlF~ 33 (136)
T 3mkb_B 21 SAIGTKALERMFV 33 (136)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHeeE
Confidence 4466688999986
No 80
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=27.86 E-value=44 Score=18.64 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 32 ~~~~g~~~y~rlF~ 45 (152)
T 4hrt_B 32 MEGTGLMLMANLFK 45 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677889999997
No 81
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=27.81 E-value=45 Score=18.58 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (146)
T 1out_B 20 IDEIGPLALARVLI 33 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 35677899999996
No 82
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=27.78 E-value=45 Score=18.53 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (146)
T 1v4x_B 20 YEDIGPKALARCLI 33 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHH
Confidence 45677899999996
No 83
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=27.66 E-value=41 Score=18.56 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+....|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (141)
T 2r80_A 21 AGDLGGEALERLFI 34 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677899999996
No 84
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=27.38 E-value=73 Score=17.44 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy17851 32 AISKACYERMFRWLVNRINR 51 (60)
Q Consensus 32 alaK~lY~rLF~wiV~~IN~ 51 (60)
.++..+..-|-+||++.|..
T Consensus 102 ~~~~~l~~~L~~Wl~~HI~~ 121 (136)
T 3agt_A 102 EVVMTTLRGLVDWLVNHIMK 121 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 46677888899999998864
No 85
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=27.27 E-value=43 Score=18.39 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (141)
T 1wmu_A 21 QEDFGAEALERMFI 34 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778899999996
No 86
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=27.15 E-value=47 Score=18.52 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (147)
T 3bom_B 20 VDEIGPQALARLLI 33 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46677899999996
No 87
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=27.03 E-value=63 Score=17.79 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (141)
T 1cg5_A 21 AEAWGADALARLFE 34 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46678899999996
No 88
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=27.01 E-value=14 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFRW 44 (60)
Q Consensus 30 rdalaK~lY~rLF~w 44 (60)
|-.+.--||.|||.|
T Consensus 72 ~k~~Phvi~crl~RW 86 (124)
T 3kmp_A 72 RKGLPHVIYCRVWRW 86 (124)
T ss_dssp EEECHHHHHHHHHTC
T ss_pred cccCceeeEEEeecC
Confidence 444566789999998
No 89
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=26.96 E-value=71 Score=19.13 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 73 V~~~g~ilgKP~~~~eA~~mL~~ls 97 (189)
T 1ex2_A 73 VCLDGECLGKPQDQEEAASMLRRLS 97 (189)
T ss_dssp EEETTEEECCCSSHHHHHHHHHHHT
T ss_pred EEECCEEcCCCCCHHHHHHHHHHhC
Confidence 4458999999999999988766553
No 90
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=26.53 E-value=45 Score=17.98 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhh
Q psy17851 30 VEAISKACYERMFR---WLVNRINR 51 (60)
Q Consensus 30 rdalaK~lY~rLF~---wiV~~IN~ 51 (60)
.+.+....|.|||. ++-...+.
T Consensus 22 ~~~~~~~fy~rlf~~~P~~~~~F~~ 46 (143)
T 1bin_A 22 IPQYSVVFYTSILEKAPAAKDLFSF 46 (143)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHSGG
T ss_pred HHHHHHHHHHHHHHHChHHHHHhHh
Confidence 46788899999996 55554443
No 91
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=26.52 E-value=45 Score=18.28 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFR 43 (60)
Q Consensus 31 dalaK~lY~rLF~ 43 (60)
+.++..+|.|||.
T Consensus 23 ~~~g~~~y~rlF~ 35 (142)
T 1jeb_A 23 DTIGTETLERLFL 35 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677789999996
No 92
>2b19_A Neuropeptide K, NPK; helix, 3 10 helix, lipid induced conformation, DPC micelles; NMR {Synthetic}
Probab=26.38 E-value=32 Score=15.31 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q psy17851 30 VEAISKACYER 40 (60)
Q Consensus 30 rdalaK~lY~r 40 (60)
.-+|-|+||+.
T Consensus 9 qvallkalygh 19 (36)
T 2b19_A 9 QVALLKALYGH 19 (36)
T ss_dssp GHHHHHHHHGG
T ss_pred HHHHHHHHhcc
Confidence 34788999973
No 93
>2xki_A Neural hemoglobin; oxygen storage, metal-binding; HET: HEM SO4; 1.30A {Cerebratulus lacteus} PDB: 1kr7_A* 1v07_A* 2xkg_A* 2xkh_A* 2vyz_A* 2vyy_A*
Probab=26.34 E-value=47 Score=17.70 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q psy17851 34 SKACYERMFR 43 (60)
Q Consensus 34 aK~lY~rLF~ 43 (60)
+..+|.|||.
T Consensus 8 ~~~~~~rlF~ 17 (110)
T 2xki_A 8 VDDFYQELFK 17 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999984
No 94
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=26.14 E-value=46 Score=18.45 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHh
Q psy17851 30 VEAISKACYERMFR---WLVNRIN 50 (60)
Q Consensus 30 rdalaK~lY~rLF~---wiV~~IN 50 (60)
.+.+...+|.|||. |+-...|
T Consensus 31 ~~~~g~~~y~rlF~~~P~~k~~F~ 54 (151)
T 1sct_B 31 MEGTGLMLMANLFKTSPSAKGKFA 54 (151)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHH
Confidence 36778899999996 4544444
No 95
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=26.13 E-value=50 Score=18.37 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (146)
T 2aa1_B 20 YDVVGPATLARCLV 33 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHH
Confidence 45677899999996
No 96
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=25.29 E-value=68 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy17851 29 AVEAISKACYERMFRWLVNRINRSLDTIMC 58 (60)
Q Consensus 29 ~rdalaK~lY~rLF~wiV~~IN~~l~~~~~ 58 (60)
.|++|.+-||. +=+.||..|..+..
T Consensus 150 SR~~l~~Wl~~-----~HN~VN~rLgKp~f 174 (189)
T 4e0i_A 150 SREELGRWMCE-----AHNKVNKKLRKPKF 174 (189)
T ss_dssp SHHHHHHHHHH-----HHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHH-----HHHHHHHHcCCCCC
Confidence 46666666665 66789998887654
No 97
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=25.23 E-value=49 Score=18.15 Aligned_cols=14 Identities=0% Similarity=0.119 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~fy~~lf~ 35 (153)
T 1gdj_A 22 IPKHTHRFFILVLE 35 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36677889999996
No 98
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=25.17 E-value=53 Score=18.20 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (146)
T 3d1k_B 20 YDDIGPKALSRCLV 33 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHH
Confidence 45677899999996
No 99
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=25.02 E-value=50 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (142)
T 3d1k_A 21 SDAIGNDALSRMIV 34 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36677889999995
No 100
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=25.01 E-value=50 Score=18.06 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 21 ~~~~g~~~y~rlF~ 34 (141)
T 2w72_C 21 AGEYGAEAYERMFL 34 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777899999994
No 101
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=25.01 E-value=77 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.9
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAIS 34 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdala 34 (60)
+..+|+.+.+|.+.++|...-..|+
T Consensus 92 V~~~g~IlgKP~~~e~A~~mL~~ls 116 (207)
T 2amh_A 92 VVKGDEVREKPLSTEQCRSFIASYS 116 (207)
T ss_dssp EEETTEEECSCSSHHHHHHHHHHHT
T ss_pred EEECCEEcCCCCCHHHHHHHHHHhC
Confidence 3458999999999999988666553
No 102
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=24.51 E-value=56 Score=18.11 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (153)
T 2bk9_A 20 PTDSGAAILTQFFN 33 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 34677889999996
No 103
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=24.49 E-value=56 Score=18.11 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 30 ~~~~g~~~~~rlF~ 43 (146)
T 1it2_A 30 YEQYSLNILLRFLK 43 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35667789999996
No 104
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=24.48 E-value=51 Score=18.32 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (151)
T 2c0k_A 20 MTEAGVEMLKRYFK 33 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678899999996
No 105
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=24.43 E-value=82 Score=19.46 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEeCceEEEeeCCHHHHHHHHHHH
Q psy17851 10 IKVGRDFVTKSQTKEQVEFAVEAI 33 (60)
Q Consensus 10 i~~~~e~~~~~~~~~~a~~~rdal 33 (60)
+..+|+.+.+|.+.++|...-..|
T Consensus 82 V~~dg~IlgKP~d~eeA~~mL~~l 105 (230)
T 2p5x_A 82 VTVGGLILEKPVDKQDAYRMLSRL 105 (230)
T ss_dssp EEETTEEECCCSSHHHHHHHHHHH
T ss_pred EEECCEEecCCCCHHHHHHHHHHh
Confidence 445899999999999998876655
No 106
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=24.09 E-value=1.1e+02 Score=17.37 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy17851 32 AISKACYERMFR 43 (60)
Q Consensus 32 alaK~lY~rLF~ 43 (60)
.++..+|.|||.
T Consensus 25 ~~g~~~f~rLF~ 36 (161)
T 3mvc_A 25 EPAISIFRNSFF 36 (161)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356678888886
No 107
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=24.05 E-value=41 Score=20.85 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhccccc
Q psy17851 40 RMFRWLVNRINRSLDTI 56 (60)
Q Consensus 40 rLF~wiV~~IN~~l~~~ 56 (60)
.|-+||+.++.++|.++
T Consensus 172 ~mv~wV~~~V~k~it~~ 188 (214)
T 2cly_A 172 HMINWVEKRVVQSISAQ 188 (214)
T ss_dssp HHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 56779999999999665
No 108
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=23.99 E-value=53 Score=18.24 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 29 ~~~~~~~fy~rlf~ 42 (162)
T 2oif_A 29 SANLGLRFFLKIFE 42 (162)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36778889999994
No 109
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.97 E-value=59 Score=17.99 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+....|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (136)
T 1gcv_B 20 MKTVVTQALDRMFK 33 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677899999996
No 110
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=23.86 E-value=54 Score=18.17 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (143)
T 1out_A 22 ADVVGAEALGRMLT 35 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667789999996
No 111
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=23.58 E-value=55 Score=18.15 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 22 ~~~~g~~~~~rlF~ 35 (144)
T 1spg_A 22 SAELGAEALGRMLV 35 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35566789999996
No 112
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=23.45 E-value=55 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (151)
T 1a6m_A 21 VAGHGQDILIRLFK 34 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677899999996
No 113
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=23.44 E-value=60 Score=18.05 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+....|.|||.
T Consensus 20 ~~~~g~~~~~rlF~ 33 (141)
T 1cg5_B 20 HKQITAKALERVFV 33 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677899999996
No 114
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=22.97 E-value=31 Score=19.77 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 70 ~gQa~Air~aIarAL~~ 86 (127)
T 3r8n_I 70 SGQAGAIRHGITRALME 86 (127)
T ss_dssp HHHHHHHHHHHHTTTTT
T ss_pred ecHHHHHHHHHHHHHHH
Confidence 56899999999999843
No 115
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=22.84 E-value=1e+02 Score=16.81 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHH------HHHHHHHH
Q psy17851 22 TKEQVEFAVEAISK------ACYERMFR 43 (60)
Q Consensus 22 ~~~~a~~~rdalaK------~lY~rLF~ 43 (60)
|.+|-...+++.++ .+|.|||.
T Consensus 2 t~~e~~~V~~sW~~v~~~g~~~~~rlF~ 29 (136)
T 1eca_A 2 SADQISTVQASFDKVKGDPVGILYAVFK 29 (136)
T ss_dssp CHHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444445554443 57788875
No 116
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=22.57 E-value=58 Score=18.17 Aligned_cols=13 Identities=0% Similarity=0.291 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q psy17851 31 EAISKACYERMFR 43 (60)
Q Consensus 31 dalaK~lY~rLF~ 43 (60)
+.+...+|.|||.
T Consensus 25 ~~~g~~~~~rlF~ 37 (152)
T 1x3k_A 25 QGTANTVFYNYLK 37 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 5566789999996
No 117
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=22.41 E-value=65 Score=17.95 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.+...+|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (153)
T 1lhs_A 21 LSAHGQEVIIRLFQ 34 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677899999996
No 118
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.23 E-value=37 Score=17.68 Aligned_cols=7 Identities=57% Similarity=0.966 Sum_probs=5.1
Q ss_pred HHHHHHH
Q psy17851 35 KACYERM 41 (60)
Q Consensus 35 K~lY~rL 41 (60)
++||.||
T Consensus 13 ~aLy~RL 19 (71)
T 2eo2_A 13 KALYNRL 19 (71)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5678876
No 119
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.55 E-value=51 Score=20.32 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17851 23 KEQVEFAVEAISKACYE 39 (60)
Q Consensus 23 ~~~a~~~rdalaK~lY~ 39 (60)
..||...|.++||+|-.
T Consensus 140 sGQA~AIR~gIARALv~ 156 (197)
T 3bbn_I 140 SGQAQAISLGVARALLK 156 (197)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 46899999999999843
No 120
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=20.52 E-value=1.4e+02 Score=18.30 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
.+.++..+|.|||.
T Consensus 21 ~~~~g~~~y~rlf~ 34 (283)
T 1c7c_A 21 AGEYGAEALERMFL 34 (283)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 35566689999996
No 121
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=20.36 E-value=42 Score=19.47 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhccc
Q psy17851 40 RMFRWLVNRINRSLD 54 (60)
Q Consensus 40 rLF~wiV~~IN~~l~ 54 (60)
||-.||+..||+---
T Consensus 14 rlrpWL~~qidSg~y 28 (137)
T 3qu3_A 14 LFGDWLLGEVSSGQY 28 (137)
T ss_dssp CHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHhccCCc
Confidence 678899999997543
No 122
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=20.34 E-value=70 Score=17.83 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q psy17851 30 VEAISKACYERMFR 43 (60)
Q Consensus 30 rdalaK~lY~rLF~ 43 (60)
-+.+....|.|||.
T Consensus 21 ~~~~g~~~~~rlF~ 34 (140)
T 3mkb_A 21 PEAYGAEALARLFA 34 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677788999996
Done!