RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17851
(60 letters)
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 94.6 bits (236), Expect = 4e-25
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ K PR+KVG ++VTK Q +QV +A A++KA YERMF W+V RIN +L+T
Sbjct: 395 LLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLET 449
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 91.9 bits (229), Expect = 4e-24
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L
Sbjct: 389 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQ 443
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 90.8 bits (226), Expect = 9e-24
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
M ++ + K +K A +A++K Y +F W+V+ +N++L +
Sbjct: 371 MAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHS 425
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 90.1 bits (224), Expect = 1e-23
Identities = 36/55 (65%), Positives = 47/55 (85%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
++A L PRIKVGRD+V K+QTKEQ +FA+EA++KA YER+FRWLV R+NR+LD
Sbjct: 366 FSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDR 420
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 90.1 bits (224), Expect = 1e-23
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L +
Sbjct: 389 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCS 443
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 89.3 bits (222), Expect = 3e-23
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA LKP++KVG + VTK Q QV +V A++K+ Y+RMF WLV R+N++LDT
Sbjct: 394 LLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 448
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 87.9 bits (218), Expect = 9e-23
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
M ++ + K +K A +A++K Y +F W+V+ +N++L +
Sbjct: 371 MAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHS 425
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 85.7 bits (212), Expect = 6e-22
Identities = 32/55 (58%), Positives = 46/55 (83%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
T++ L PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD
Sbjct: 397 FTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDK 451
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 83.0 bits (206), Expect = 5e-21
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
++ A I G ++ Q ++ +A++KA YER+F WLV++IN ++
Sbjct: 316 LSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC 374
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 78.1 bits (193), Expect = 3e-19
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 2 TKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
T+ L + EQ A +A++K Y +F +VNR+N+
Sbjct: 388 TRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF 441
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 0.88
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 1 MTKAFLKPRIKVGRDF----------VTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 50
MT PR ++GR V S ++E +++ VE + K +VN N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW--LVEIVN-YN 1847
Query: 51 RSLDTIMCA 59
+ A
Sbjct: 1848 VENQQYVAA 1856
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 24.8 bits (55), Expect = 1.8
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 7 KPRIKVGRDFVTKSQTKEQVEFAVEAISKA 36
+ I R + + T +Q++ A+E + K
Sbjct: 362 ESLI---RFSLMATHTYDQIDEAIEKMVKV 388
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 24.1 bits (53), Expect = 3.4
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A +A ++
Sbjct: 18 QVEYAFKATNQT 29
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot
superfamily; 2.00A {Tachypleus tridentatus} SCOP:
g.17.1.5
Length = 175
Score = 23.9 bits (51), Expect = 4.0
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 12 VGRDFVTKSQTKEQVEFAVEAISK 35
+GR + ++ K+++E AVEA+++
Sbjct: 16 LGRTQIVTTEIKDKIEKAVEAVAQ 39
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 23.7 bits (52), Expect = 4.4
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A +AI++
Sbjct: 24 QVEYAFKAINQG 35
>3nzj_F Proteasome component C1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G*
2zcy_F*
Length = 288
Score = 23.5 bits (51), Expect = 4.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+AV+A+
Sbjct: 23 QVEYAVKAVENG 34
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 23.3 bits (51), Expect = 4.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A EA+ K
Sbjct: 18 QVEYAQEAVKKG 29
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5,
effector-binding, protein transport; HET: GNP; 2.31A
{Homo sapiens} SCOP: h.1.27.2
Length = 79
Score = 23.1 bits (49), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 11 KVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVN 47
+V RDFV SQT QV+ +E I +A R ++N
Sbjct: 33 QVQRDFVKLSQTL-QVQ--LERIRQADSLERIRAILN 66
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 23.4 bits (51), Expect = 5.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+AV+A+
Sbjct: 19 QVEYAVKAVENG 30
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 23.4 bits (51), Expect = 6.2
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
Q+E+A+EA+ +
Sbjct: 21 QIEYAMEAVKQG 32
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 23.3 bits (51), Expect = 6.3
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
Q+E+A+ A++
Sbjct: 20 QIEYALAAVAGG 31
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 23.4 bits (51), Expect = 6.3
Identities = 3/12 (25%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
Q+++A+ A+ +
Sbjct: 20 QIDYALTAVKQG 31
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 23.3 bits (51), Expect = 6.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 46 VNRINRSLDTI 56
+ RIN SLD I
Sbjct: 120 LRRINVSLDAI 130
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 22.9 bits (50), Expect = 7.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 25 QVEFAVEAISKA 36
QVE+ +EAI
Sbjct: 23 QVEYDIEAIKLG 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.134 0.401
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 841,807
Number of extensions: 34285
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 24
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)