RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17851
(60 letters)
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 54.3 bits (130), Expect = 2e-11
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L
Sbjct: 342 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQ 396
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 53.6 bits (128), Expect = 4e-11
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA LKP++KVG + VTK Q QV +V A++K+ Y+RMF WLV R+N++LDT
Sbjct: 346 LLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 400
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 53.2 bits (127), Expect = 6e-11
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
+ KA PR+ VG + VTK +T +V +V A++KA YE+MF W+V RIN+ LDT
Sbjct: 348 LLKALCYPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQLDT 402
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 51.3 bits (122), Expect = 2e-10
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
M ++ + K +K A +A++K Y +F W+V+ +N++L +
Sbjct: 309 MAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHS 363
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 50.9 bits (121), Expect = 3e-10
Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 1 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDTIMC 58
T++ L PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD
Sbjct: 319 FTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 376
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 43.9 bits (103), Expect = 1e-07
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDT 55
++ A I G ++ Q ++ +A++KA YER+F WLV++IN ++
Sbjct: 308 LSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC 366
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 24.8 bits (53), Expect = 0.65
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 7 KPRIKVGRDFVTKSQTKEQVEFAVEAISKA 36
+ RI+ ++ + T EQ+ AVEA ++
Sbjct: 367 QARIRT---QMSAAHTPEQITRAVEAFTRI 393
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 24.2 bits (52), Expect = 1.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A +AI++
Sbjct: 23 QVEYAFKAINQG 34
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 175
Score = 23.8 bits (51), Expect = 1.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 12 VGRDFVTKSQTKEQVEFAVEAISK 35
+GR + ++ K+++E AVEA+++
Sbjct: 16 LGRTQIVTTEIKDKIEKAVEAVAQ 39
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 23.4 bits (49), Expect = 2.1
Identities = 3/30 (10%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 7 KPRIKVGRDFVTKSQTKEQVEFAVEAISKA 36
R+++ +T + + ++ +E +
Sbjct: 356 TARLRL---TLTAAHEMQDIDRLLEVLHGN 382
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 23.1 bits (49), Expect = 3.0
Identities = 3/14 (21%), Positives = 9/14 (64%)
Query: 22 TKEQVEFAVEAISK 35
+++ E A + I++
Sbjct: 5 MRDRSELARKGIAR 18
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 243
Score = 22.8 bits (48), Expect = 3.1
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A +A ++
Sbjct: 18 QVEYAFKATNQT 29
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 22.9 bits (49), Expect = 3.2
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 1 MTKAFLKP-----RIKVGRDFVTKSQTKEQVEFAVEAISKACY 38
M AF K R++ G T E E EA +A
Sbjct: 113 MRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYN 155
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 22.9 bits (47), Expect = 3.3
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 22 TKEQVEFAVEAISKA 36
T E V+ + + A
Sbjct: 330 TAEDVDHLLNQVRLA 344
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 22.4 bits (47), Expect = 4.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 22 TKEQVEFAVEAISKAC 37
TKEQ++ E I K
Sbjct: 385 TKEQLDECTEIIVKTV 400
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 22.5 bits (47), Expect = 4.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 22 TKEQVEFAVEAISKACYE 39
Q+ +E IS+ E
Sbjct: 405 EDAQIRQGLEIISQCFDE 422
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 21.9 bits (46), Expect = 6.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A EA+ +
Sbjct: 20 QVEYAREAVKRG 31
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 21.9 bits (46), Expect = 6.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 25 QVEFAVEAISKA 36
QVE+ +EAI
Sbjct: 16 QVEYDIEAIKLG 27
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 21.9 bits (46), Expect = 6.3
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A++A+ +
Sbjct: 22 QVEYAMKAVENS 33
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 22.0 bits (46), Expect = 6.6
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 25 QVEFAVEAISK 35
Q+E+A+ A++
Sbjct: 20 QIEYALAAVAG 30
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 21.9 bits (46), Expect = 6.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+AV+A+
Sbjct: 19 QVEYAVKAVENG 30
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 250
Score = 22.0 bits (46), Expect = 6.8
Identities = 3/12 (25%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
Q+++A+ A+ +
Sbjct: 20 QIDYALTAVKQG 31
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 22.0 bits (46), Expect = 7.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A EA+ K
Sbjct: 11 QVEYAREAVKKG 22
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 111
Score = 21.8 bits (46), Expect = 7.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 10 IKVGRDFVTKSQTKEQVEFAVEAISKAC 37
+K G + T+ ++ A I C
Sbjct: 62 VKDGAEAPTEEVVAAGLDAAKPFIKVLC 89
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 22.0 bits (46), Expect = 7.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 25 QVEFAVEAISKA 36
QVE+A+E+IS A
Sbjct: 20 QVEYALESISHA 31
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 22.0 bits (45), Expect = 7.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 28 FAVEAISKACYERMFRWLVNRIN 50
F + + Y FRW+ I+
Sbjct: 164 FMCSVLKRQGYGEGFRWMAQYID 186
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 21.9 bits (46), Expect = 7.3
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
Q+E+A+EA+ +
Sbjct: 18 QIEYAMEAVKQG 29
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 21.9 bits (46), Expect = 8.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+A EA+ K
Sbjct: 17 QVEYAQEAVKKG 28
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 21.9 bits (46), Expect = 8.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A+EAI A
Sbjct: 19 QVEYAMEAIGHA 30
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 242
Score = 21.6 bits (45), Expect = 8.4
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 25 QVEFAVEAISKA 36
QVE+++EAI
Sbjct: 15 QVEYSLEAIKLG 26
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 21.6 bits (45), Expect = 8.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A+EAI +
Sbjct: 20 QVEYALEAIKQG 31
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 241
Score = 21.5 bits (45), Expect = 8.8
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 25 QVEFAVEAISKA 36
QVE+A+EA+ +
Sbjct: 17 QVEYALEAVKRG 28
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 269
Score = 21.7 bits (46), Expect = 9.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 44 WLVNRINRSLDTIMCAY 60
W +N+ MCAY
Sbjct: 177 WKQELVNQKDCPYMCAY 193
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 21.4 bits (44), Expect = 9.9
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 14 RDFVTKSQTKEQVEFAVEAISK 35
R + +Q++ V A+
Sbjct: 373 RFTPSPVHDLKQIDGLVHAMDL 394
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.134 0.401
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 205,020
Number of extensions: 6454
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 37
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)