Query psy17852
Match_columns 200
No_of_seqs 114 out of 749
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:42:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.8 9.7E-17 2.1E-21 161.0 26.5 193 2-195 1381-1656(1930)
2 PF01576 Myosin_tail_1: Myosin 99.8 2.2E-20 4.9E-25 179.0 0.0 193 2-195 323-598 (859)
3 KOG0161|consensus 99.5 3.2E-11 6.9E-16 122.0 26.5 188 3-191 1466-1736(1930)
4 PF01576 Myosin_tail_1: Myosin 99.4 8.7E-14 1.9E-18 133.8 0.0 189 3-192 408-679 (859)
5 PF00261 Tropomyosin: Tropomyo 97.5 0.037 8.1E-07 46.0 24.4 46 146-191 172-217 (237)
6 PRK02224 chromosome segregatio 97.5 0.083 1.8E-06 51.6 25.1 49 151-199 406-454 (880)
7 PF00261 Tropomyosin: Tropomyo 97.4 0.064 1.4E-06 44.5 21.0 70 117-187 151-220 (237)
8 TIGR02168 SMC_prok_B chromosom 97.3 0.22 4.8E-06 49.5 29.5 54 4-57 674-727 (1179)
9 PF09726 Macoilin: Transmembra 97.3 0.18 3.9E-06 48.3 24.5 58 2-59 427-484 (697)
10 KOG0977|consensus 97.1 0.2 4.2E-06 46.5 20.5 40 7-46 42-81 (546)
11 PF08826 DMPK_coil: DMPK coile 97.0 0.023 5E-07 37.4 9.9 59 126-184 1-59 (61)
12 PRK11637 AmiB activator; Provi 96.9 0.28 6.2E-06 44.1 29.5 69 5-73 45-113 (428)
13 TIGR00606 rad50 rad50. This fa 96.8 0.77 1.7E-05 47.1 26.4 44 146-189 1050-1093(1311)
14 KOG0977|consensus 96.6 0.57 1.2E-05 43.5 21.8 188 4-192 89-338 (546)
15 PRK02224 chromosome segregatio 96.5 0.89 1.9E-05 44.5 27.3 53 16-68 344-396 (880)
16 PF00038 Filament: Intermediat 96.0 0.84 1.8E-05 39.0 28.6 34 9-42 6-39 (312)
17 COG1196 Smc Chromosome segrega 95.7 2.7 5.9E-05 42.7 29.2 73 122-194 828-900 (1163)
18 PF07888 CALCOCO1: Calcium bin 95.7 1.9 4E-05 40.2 27.8 27 172-198 372-398 (546)
19 PF00038 Filament: Intermediat 95.6 1.3 2.7E-05 37.9 29.7 61 7-67 75-135 (312)
20 COG1196 Smc Chromosome segrega 95.6 3.1 6.7E-05 42.3 29.2 37 7-43 674-710 (1163)
21 PF06428 Sec2p: GDP/GTP exchan 95.5 0.18 4E-06 36.4 8.8 62 130-191 2-64 (100)
22 PRK11637 AmiB activator; Provi 95.2 2.3 5E-05 38.3 27.5 71 3-73 50-120 (428)
23 TIGR00606 rad50 rad50. This fa 94.9 5.3 0.00012 41.2 28.3 34 7-40 829-862 (1311)
24 KOG0996|consensus 94.4 6.3 0.00014 39.8 25.8 53 5-57 797-849 (1293)
25 PF10174 Cast: RIM-binding pro 93.7 7.3 0.00016 38.0 24.6 73 118-191 340-419 (775)
26 KOG0971|consensus 93.6 8.3 0.00018 38.1 25.0 40 123-162 404-443 (1243)
27 KOG0971|consensus 93.5 8.4 0.00018 38.1 25.4 45 146-190 399-443 (1243)
28 PRK09039 hypothetical protein; 93.2 5.5 0.00012 35.0 20.6 64 127-190 121-184 (343)
29 KOG0996|consensus 93.2 11 0.00023 38.2 26.4 76 122-197 521-596 (1293)
30 PF10174 Cast: RIM-binding pro 92.9 9.9 0.00021 37.1 25.7 44 24-67 332-375 (775)
31 COG4942 Membrane-bound metallo 92.8 7.2 0.00016 35.2 28.2 68 3-70 41-108 (420)
32 PHA02562 46 endonuclease subun 92.5 8.6 0.00019 35.5 22.9 35 35-69 213-247 (562)
33 PF12718 Tropomyosin_1: Tropom 92.4 3.9 8.5E-05 31.3 20.3 61 122-189 80-140 (143)
34 KOG4674|consensus 92.3 18 0.00038 38.5 27.0 65 3-67 657-721 (1822)
35 PRK04778 septation ring format 92.1 11 0.00023 35.4 25.8 76 116-192 284-369 (569)
36 PF07888 CALCOCO1: Calcium bin 92.0 11 0.00023 35.3 28.1 38 14-51 143-180 (546)
37 KOG0612|consensus 92.0 16 0.00034 37.3 23.3 75 122-196 700-774 (1317)
38 PF09304 Cortex-I_coil: Cortex 91.9 3.8 8.1E-05 29.9 12.5 59 122-180 16-74 (107)
39 PF12128 DUF3584: Protein of u 91.8 17 0.00037 37.3 27.0 64 4-67 604-667 (1201)
40 PF06428 Sec2p: GDP/GTP exchan 91.5 2.3 4.9E-05 30.8 8.4 59 15-73 2-61 (100)
41 PF12718 Tropomyosin_1: Tropom 90.9 6 0.00013 30.3 17.9 139 10-162 3-141 (143)
42 PF12325 TMF_TATA_bd: TATA ele 89.2 7.6 0.00016 29.0 11.2 68 2-73 18-85 (120)
43 KOG0933|consensus 89.0 27 0.00058 35.0 23.1 52 125-176 825-876 (1174)
44 COG4026 Uncharacterized protei 88.5 8.5 0.00018 31.9 10.3 69 122-190 135-203 (290)
45 KOG0612|consensus 88.1 33 0.00072 35.1 25.2 51 144-196 668-718 (1317)
46 PF12128 DUF3584: Protein of u 88.0 34 0.00074 35.1 26.5 59 11-69 604-662 (1201)
47 PF09730 BicD: Microtubule-ass 87.9 27 0.00059 33.8 25.5 104 6-109 54-162 (717)
48 KOG0976|consensus 87.5 31 0.00067 34.0 26.1 62 5-66 97-158 (1265)
49 PF10473 CENP-F_leu_zip: Leuci 87.1 12 0.00026 28.7 14.4 44 30-73 54-97 (140)
50 KOG0964|consensus 86.7 37 0.0008 34.1 25.8 29 116-145 787-815 (1200)
51 PRK03918 chromosome segregatio 86.5 34 0.00074 33.5 29.0 21 168-188 409-429 (880)
52 PRK04778 septation ring format 86.4 29 0.00062 32.6 24.4 69 5-73 254-327 (569)
53 PF09730 BicD: Microtubule-ass 85.9 35 0.00076 33.1 22.2 69 19-87 32-112 (717)
54 COG4026 Uncharacterized protei 85.5 14 0.00031 30.7 10.1 65 10-74 131-202 (290)
55 KOG0933|consensus 85.5 43 0.00093 33.7 25.8 61 123-183 816-876 (1174)
56 PF08826 DMPK_coil: DMPK coile 82.8 11 0.00024 24.7 10.0 56 137-192 5-60 (61)
57 PF15070 GOLGA2L5: Putative go 82.0 48 0.001 31.6 22.8 14 3-16 7-20 (617)
58 PF02183 HALZ: Homeobox associ 81.6 9.2 0.0002 23.4 5.9 42 3-44 1-42 (45)
59 PF14197 Cep57_CLD_2: Centroso 80.9 14 0.00031 24.7 9.2 62 4-65 2-63 (69)
60 PF04102 SlyX: SlyX; InterPro 80.6 12 0.00027 24.8 6.8 45 147-191 8-52 (69)
61 KOG0994|consensus 80.2 76 0.0017 32.7 25.7 63 122-184 1563-1632(1758)
62 PF05701 WEMBL: Weak chloropla 80.2 51 0.0011 30.7 27.6 139 4-143 31-200 (522)
63 PRK04406 hypothetical protein; 79.6 16 0.00034 24.9 7.1 42 148-189 16-57 (75)
64 PRK01156 chromosome segregatio 79.3 68 0.0015 31.6 29.0 38 162-199 414-455 (895)
65 COG1579 Zn-ribbon protein, pos 79.3 36 0.00079 28.5 22.5 63 11-73 14-76 (239)
66 KOG0976|consensus 79.1 70 0.0015 31.7 25.0 18 122-139 291-308 (1265)
67 KOG4673|consensus 78.4 68 0.0015 31.1 21.9 50 122-171 612-665 (961)
68 PRK00295 hypothetical protein; 78.3 15 0.00032 24.5 6.5 45 146-190 8-52 (68)
69 PF09726 Macoilin: Transmembra 78.2 69 0.0015 31.1 26.1 59 4-69 457-515 (697)
70 KOG1899|consensus 78.0 67 0.0014 30.8 15.1 80 16-107 106-185 (861)
71 PRK02793 phi X174 lysis protei 77.2 16 0.00035 24.6 6.6 45 146-190 11-55 (72)
72 PRK09039 hypothetical protein; 77.0 51 0.0011 28.9 21.8 15 148-162 170-184 (343)
73 PF15619 Lebercilin: Ciliary p 76.7 38 0.00083 27.3 24.7 153 32-190 16-190 (194)
74 TIGR02680 conserved hypothetic 76.6 1E+02 0.0022 32.2 26.7 41 2-42 744-784 (1353)
75 PF14662 CCDC155: Coiled-coil 75.6 41 0.00089 27.2 20.8 60 7-70 15-74 (193)
76 PF05622 HOOK: HOOK protein; 75.4 0.91 2E-05 43.7 0.0 25 147-171 388-412 (713)
77 PRK02119 hypothetical protein; 75.3 20 0.00042 24.3 6.6 44 147-190 13-56 (73)
78 PF04899 MbeD_MobD: MbeD/MobD 74.7 23 0.0005 23.8 9.3 49 140-188 18-66 (70)
79 PF08614 ATG16: Autophagy prot 74.7 39 0.00084 27.0 9.3 56 17-72 77-132 (194)
80 KOG4674|consensus 74.4 1.3E+02 0.0028 32.4 25.8 36 11-46 848-883 (1822)
81 PRK00846 hypothetical protein; 74.3 23 0.0005 24.3 6.7 46 146-191 16-61 (77)
82 PRK00736 hypothetical protein; 73.9 23 0.00049 23.6 6.5 46 146-191 8-53 (68)
83 PRK04325 hypothetical protein; 73.8 24 0.00051 23.9 6.7 47 145-191 11-57 (74)
84 PF07106 TBPIP: Tat binding pr 73.0 33 0.00072 26.6 8.4 63 8-70 73-137 (169)
85 KOG0249|consensus 72.9 97 0.0021 30.2 14.9 56 129-184 202-257 (916)
86 COG4942 Membrane-bound metallo 71.4 81 0.0017 28.6 25.6 64 9-72 40-103 (420)
87 KOG0964|consensus 71.4 1.2E+02 0.0026 30.7 23.4 43 122-164 411-453 (1200)
88 PF14915 CCDC144C: CCDC144C pr 71.0 69 0.0015 27.7 27.0 63 118-181 190-259 (305)
89 COG1340 Uncharacterized archae 70.4 70 0.0015 27.6 25.5 28 155-182 219-246 (294)
90 PF05700 BCAS2: Breast carcino 70.2 56 0.0012 26.7 9.5 63 7-69 143-209 (221)
91 PF07889 DUF1664: Protein of u 69.9 45 0.00097 25.1 8.2 47 3-52 39-85 (126)
92 PF11932 DUF3450: Protein of u 69.1 65 0.0014 26.7 12.2 25 154-178 81-105 (251)
93 PF15035 Rootletin: Ciliary ro 67.6 62 0.0013 25.8 9.7 62 123-191 61-122 (182)
94 PF14915 CCDC144C: CCDC144C pr 67.5 83 0.0018 27.2 25.1 70 4-73 28-101 (305)
95 PF05622 HOOK: HOOK protein; 67.0 1.8 4E-05 41.6 0.0 30 122-151 370-399 (713)
96 PF14662 CCDC155: Coiled-coil 66.1 70 0.0015 25.9 25.1 53 17-69 4-56 (193)
97 PF09304 Cortex-I_coil: Cortex 65.9 50 0.0011 24.1 14.9 38 122-159 65-102 (107)
98 PRK04863 mukB cell division pr 65.5 1.9E+02 0.0041 30.7 29.2 41 148-188 556-596 (1486)
99 PF08614 ATG16: Autophagy prot 65.4 64 0.0014 25.7 8.7 42 10-51 105-146 (194)
100 PF12777 MT: Microtubule-bindi 64.5 89 0.0019 27.3 10.1 70 117-187 238-307 (344)
101 KOG0709|consensus 64.3 19 0.00042 32.8 5.9 77 116-200 250-330 (472)
102 PF06005 DUF904: Protein of un 64.0 42 0.00091 22.6 9.2 54 17-70 7-60 (72)
103 PF10224 DUF2205: Predicted co 62.5 36 0.00077 23.6 5.7 28 31-58 26-53 (80)
104 PF10234 Cluap1: Clusterin-ass 62.4 97 0.0021 26.4 9.5 60 5-64 167-226 (267)
105 PF02185 HR1: Hr1 repeat; Int 62.2 42 0.00092 22.1 7.2 27 123-149 2-28 (70)
106 PF12329 TMF_DNA_bd: TATA elem 61.8 47 0.001 22.4 9.1 59 122-180 12-70 (74)
107 KOG1003|consensus 61.7 87 0.0019 25.5 24.0 68 122-189 116-183 (205)
108 PRK10884 SH3 domain-containing 61.6 87 0.0019 25.5 11.2 12 122-133 100-111 (206)
109 PF12777 MT: Microtubule-bindi 61.3 50 0.0011 28.8 8.0 37 26-62 261-297 (344)
110 COG1842 PspA Phage shock prote 61.2 94 0.002 25.7 19.0 56 18-73 14-69 (225)
111 KOG4593|consensus 61.1 1.6E+02 0.0035 28.5 24.3 99 92-190 380-487 (716)
112 PF15294 Leu_zip: Leucine zipp 59.9 1.1E+02 0.0024 26.2 12.1 73 2-74 134-208 (278)
113 PF05667 DUF812: Protein of un 59.3 1.7E+02 0.0036 27.9 27.0 54 6-59 327-380 (594)
114 PF10481 CENP-F_N: Cenp-F N-te 58.6 1.2E+02 0.0026 26.1 16.0 88 92-195 46-133 (307)
115 KOG0980|consensus 58.3 2E+02 0.0044 28.7 23.8 6 150-155 501-506 (980)
116 KOG2264|consensus 56.6 1.7E+02 0.0037 28.0 10.6 57 137-193 94-150 (907)
117 PRK10884 SH3 domain-containing 55.7 1.1E+02 0.0024 24.9 11.0 12 124-135 95-106 (206)
118 PF04012 PspA_IM30: PspA/IM30 55.5 1.1E+02 0.0024 24.7 19.9 54 20-73 15-68 (221)
119 TIGR03185 DNA_S_dndD DNA sulfu 54.7 2E+02 0.0043 27.4 27.2 45 6-50 215-259 (650)
120 KOG0250|consensus 54.5 2.5E+02 0.0055 28.6 27.5 35 154-188 391-425 (1074)
121 PF05911 DUF869: Plant protein 53.5 2.3E+02 0.005 27.9 23.9 92 92-191 599-693 (769)
122 PRK15422 septal ring assembly 53.2 73 0.0016 22.0 7.2 44 4-47 8-51 (79)
123 PF07106 TBPIP: Tat binding pr 52.3 1.1E+02 0.0023 23.7 8.5 17 143-159 93-109 (169)
124 PRK00736 hypothetical protein; 51.5 69 0.0015 21.2 7.0 43 148-190 3-45 (68)
125 PF10146 zf-C4H2: Zinc finger- 50.7 1.4E+02 0.0031 24.7 15.3 72 122-193 32-103 (230)
126 PF06156 DUF972: Protein of un 50.4 87 0.0019 22.8 6.4 44 4-47 12-55 (107)
127 KOG0804|consensus 50.3 2.1E+02 0.0045 26.4 16.2 40 98-138 419-458 (493)
128 PF10481 CENP-F_N: Cenp-F N-te 50.1 1.7E+02 0.0036 25.2 12.5 66 8-73 61-126 (307)
129 COG3074 Uncharacterized protei 50.0 78 0.0017 21.4 9.4 52 4-55 8-59 (79)
130 PRK00846 hypothetical protein; 49.6 83 0.0018 21.6 8.1 43 147-189 10-52 (77)
131 KOG0979|consensus 49.5 3E+02 0.0065 28.0 23.9 66 122-187 290-355 (1072)
132 PF00769 ERM: Ezrin/radixin/mo 47.9 1.6E+02 0.0035 24.5 12.7 45 146-190 78-122 (246)
133 PRK04406 hypothetical protein; 47.9 86 0.0019 21.2 8.6 45 146-190 7-51 (75)
134 PF04102 SlyX: SlyX; InterPro 47.4 81 0.0018 20.8 7.9 42 148-189 2-43 (69)
135 PF13851 GAS: Growth-arrest sp 47.3 1.5E+02 0.0033 23.9 22.3 60 8-67 28-87 (201)
136 KOG1029|consensus 47.1 3E+02 0.0066 27.4 20.4 54 16-70 395-451 (1118)
137 PF05557 MAD: Mitotic checkpoi 46.4 6.6 0.00014 37.9 0.0 33 30-62 88-120 (722)
138 PRK04325 hypothetical protein; 46.2 90 0.002 21.0 8.3 44 147-190 6-49 (74)
139 PF12329 TMF_DNA_bd: TATA elem 46.1 90 0.002 21.0 7.4 45 8-52 13-57 (74)
140 KOG4643|consensus 45.8 3.5E+02 0.0075 27.7 24.2 56 15-70 395-450 (1195)
141 PF14197 Cep57_CLD_2: Centroso 45.3 91 0.002 20.8 10.1 63 122-191 5-67 (69)
142 KOG0994|consensus 45.0 3.9E+02 0.0084 28.0 25.3 40 149-188 1709-1748(1758)
143 PF08182 Pedibin: Pedibin/Hym- 44.6 45 0.00097 19.2 3.2 27 33-59 2-28 (35)
144 COG1340 Uncharacterized archae 43.9 2.1E+02 0.0046 24.7 28.3 38 150-187 207-244 (294)
145 PRK13729 conjugal transfer pil 43.8 1.8E+02 0.004 26.8 8.7 41 147-187 80-120 (475)
146 PF05266 DUF724: Protein of un 43.2 1.7E+02 0.0038 23.4 11.1 44 146-189 134-177 (190)
147 PF04859 DUF641: Plant protein 42.5 1.2E+02 0.0026 23.0 6.3 43 32-74 77-119 (131)
148 PRK10803 tol-pal system protei 42.5 2.1E+02 0.0045 24.1 9.7 61 123-183 41-101 (263)
149 PF04012 PspA_IM30: PspA/IM30 42.5 1.8E+02 0.0039 23.4 18.1 47 25-71 27-73 (221)
150 PF15233 SYCE1: Synaptonemal c 42.2 1.5E+02 0.0033 22.5 7.1 55 12-66 4-58 (134)
151 KOG1853|consensus 41.9 2.2E+02 0.0048 24.3 21.1 22 148-169 152-173 (333)
152 PRK02793 phi X174 lysis protei 41.9 1.1E+02 0.0023 20.6 8.2 43 148-190 6-48 (72)
153 PRK02119 hypothetical protein; 40.5 1.1E+02 0.0024 20.5 8.3 44 147-190 6-49 (73)
154 PRK10803 tol-pal system protei 39.8 2.3E+02 0.0049 23.8 9.1 59 9-67 42-100 (263)
155 PF08647 BRE1: BRE1 E3 ubiquit 39.4 1.3E+02 0.0029 21.1 9.2 59 124-182 33-91 (96)
156 PF06160 EzrA: Septation ring 39.3 3.3E+02 0.0071 25.6 21.5 47 117-164 347-393 (560)
157 PRK00295 hypothetical protein; 38.5 1.2E+02 0.0025 20.1 8.2 43 148-190 3-45 (68)
158 PF15619 Lebercilin: Ciliary p 38.4 2.1E+02 0.0046 23.0 23.0 64 9-72 14-77 (194)
159 COG5570 Uncharacterized small 38.1 96 0.0021 19.7 4.3 51 20-70 4-54 (57)
160 PF11559 ADIP: Afadin- and alp 38.0 1.8E+02 0.0038 22.0 11.1 66 122-187 66-131 (151)
161 PF04582 Reo_sigmaC: Reovirus 38.0 98 0.0021 27.2 5.8 53 123-175 99-151 (326)
162 PRK15422 septal ring assembly 37.5 1.4E+02 0.003 20.6 9.6 35 17-51 7-41 (79)
163 PF04871 Uso1_p115_C: Uso1 / p 37.3 1.8E+02 0.0039 22.0 8.8 19 24-42 30-48 (136)
164 PF05529 Bap31: B-cell recepto 37.1 2.1E+02 0.0045 22.6 8.6 19 169-187 173-191 (192)
165 PF15254 CCDC14: Coiled-coil d 36.7 4.3E+02 0.0094 26.1 12.9 21 27-47 433-453 (861)
166 COG1842 PspA Phage shock prote 36.4 2.5E+02 0.0053 23.2 14.9 50 142-191 91-140 (225)
167 PF02183 HALZ: Homeobox associ 36.3 1E+02 0.0022 18.8 5.7 41 147-187 2-42 (45)
168 PF15070 GOLGA2L5: Putative go 36.1 4E+02 0.0086 25.6 24.0 10 19-28 48-57 (617)
169 COG2433 Uncharacterized conser 35.9 4E+02 0.0087 25.6 12.1 44 8-51 423-466 (652)
170 PF10805 DUF2730: Protein of u 35.7 1.7E+02 0.0036 21.1 8.3 55 7-61 35-91 (106)
171 COG1730 GIM5 Predicted prefold 35.2 2.1E+02 0.0045 22.0 7.1 44 12-55 92-135 (145)
172 PF12325 TMF_TATA_bd: TATA ele 34.9 1.9E+02 0.0041 21.5 11.1 12 94-105 21-32 (120)
173 PF11471 Sugarporin_N: Maltopo 34.8 1.1E+02 0.0025 19.7 4.5 30 147-176 29-58 (60)
174 PRK13729 conjugal transfer pil 34.7 2.7E+02 0.0059 25.8 8.4 38 122-159 83-120 (475)
175 PF05557 MAD: Mitotic checkpoi 34.7 47 0.001 32.1 3.8 58 5-62 348-405 (722)
176 PF06008 Laminin_I: Laminin Do 34.7 2.7E+02 0.0058 23.1 25.3 31 37-67 75-105 (264)
177 PF12958 DUF3847: Protein of u 34.6 1.6E+02 0.0035 20.6 6.0 43 152-197 3-45 (86)
178 smart00340 HALZ homeobox assoc 33.3 1.1E+02 0.0024 18.5 3.8 26 17-42 8-33 (44)
179 PF04111 APG6: Autophagy prote 33.1 3.2E+02 0.007 23.6 11.6 29 127-155 62-90 (314)
180 PF06160 EzrA: Septation ring 32.7 4.2E+02 0.0092 24.8 27.2 76 117-193 281-366 (560)
181 KOG4196|consensus 32.0 1.9E+02 0.0041 21.9 5.8 35 23-57 76-110 (135)
182 PF03148 Tektin: Tektin family 31.9 3.7E+02 0.008 23.9 24.9 16 92-107 147-162 (384)
183 KOG2264|consensus 31.8 2E+02 0.0042 27.6 7.0 39 10-48 82-120 (907)
184 PF15372 DUF4600: Domain of un 31.7 2.3E+02 0.005 21.4 7.6 41 24-64 61-101 (129)
185 cd00089 HR1 Protein kinase C-r 31.4 1.5E+02 0.0033 19.4 7.6 31 118-149 6-36 (72)
186 KOG0804|consensus 31.1 4.3E+02 0.0093 24.4 17.6 74 116-193 384-457 (493)
187 PF05911 DUF869: Plant protein 30.6 5.4E+02 0.012 25.4 23.3 162 19-185 12-204 (769)
188 PF11180 DUF2968: Protein of u 30.3 3E+02 0.0064 22.3 10.6 61 122-189 126-186 (192)
189 PF10212 TTKRSYEDQ: Predicted 30.1 4.7E+02 0.01 24.5 11.9 22 29-50 414-435 (518)
190 PF08647 BRE1: BRE1 E3 ubiquit 30.0 2E+02 0.0043 20.2 9.5 52 7-58 3-54 (96)
191 PF09755 DUF2046: Uncharacteri 29.9 3.8E+02 0.0082 23.4 25.4 41 148-188 161-202 (310)
192 KOG2391|consensus 29.0 4.1E+02 0.0089 23.6 9.8 63 118-181 222-284 (365)
193 KOG0963|consensus 28.7 5.3E+02 0.012 24.7 23.9 23 33-55 119-141 (629)
194 COG2433 Uncharacterized conser 28.7 5.3E+02 0.012 24.8 12.2 12 182-193 637-648 (652)
195 PF08317 Spc7: Spc7 kinetochor 28.6 3.9E+02 0.0084 23.1 22.8 50 122-171 216-265 (325)
196 TIGR02231 conserved hypothetic 28.1 4.8E+02 0.01 24.0 11.8 34 157-190 138-171 (525)
197 PRK13169 DNA replication intia 27.7 2.5E+02 0.0053 20.6 6.4 42 5-46 13-54 (110)
198 PF06005 DUF904: Protein of un 27.4 2E+02 0.0043 19.3 8.9 35 4-38 8-42 (72)
199 COG3883 Uncharacterized protei 27.4 3.9E+02 0.0085 22.7 26.6 59 16-74 33-91 (265)
200 cd07622 BAR_SNX4 The Bin/Amphi 27.2 3E+02 0.0064 22.2 6.8 53 3-55 10-62 (201)
201 KOG1655|consensus 27.1 3.5E+02 0.0076 22.1 14.5 128 40-172 17-148 (218)
202 PF10473 CENP-F_leu_zip: Leuci 27.0 2.9E+02 0.0063 21.1 19.0 42 124-165 68-109 (140)
203 COG2900 SlyX Uncharacterized p 26.7 2.1E+02 0.0045 19.4 6.7 33 156-188 21-53 (72)
204 PF09032 Siah-Interact_N: Siah 26.6 1.9E+02 0.0042 19.9 4.7 41 145-185 5-47 (79)
205 PF05837 CENP-H: Centromere pr 26.3 2.5E+02 0.0054 20.1 8.9 47 3-49 6-52 (106)
206 PF04859 DUF641: Plant protein 26.0 2.9E+02 0.0064 20.9 6.4 49 123-171 81-129 (131)
207 PF02994 Transposase_22: L1 tr 25.9 3E+02 0.0066 24.4 7.1 7 11-17 109-115 (370)
208 PF11365 DUF3166: Protein of u 25.4 2.3E+02 0.005 20.2 5.1 43 4-46 5-47 (96)
209 PF02994 Transposase_22: L1 tr 24.2 3.4E+02 0.0074 24.0 7.1 7 7-13 112-118 (370)
210 KOG0239|consensus 24.1 5.5E+02 0.012 24.9 8.9 27 29-55 242-268 (670)
211 KOG4673|consensus 23.8 7.1E+02 0.015 24.5 24.4 68 4-71 350-431 (961)
212 PF11932 DUF3450: Protein of u 23.3 4.2E+02 0.0092 21.8 13.8 51 22-72 43-93 (251)
213 PF10498 IFT57: Intra-flagella 23.3 5.3E+02 0.011 22.9 10.3 70 5-74 250-319 (359)
214 TIGR02449 conserved hypothetic 23.3 2.3E+02 0.005 18.7 8.2 37 9-45 2-38 (65)
215 KOG0999|consensus 23.0 6.7E+02 0.015 24.0 23.1 84 24-107 145-233 (772)
216 PF11180 DUF2968: Protein of u 22.9 4.1E+02 0.009 21.5 12.1 33 141-173 152-184 (192)
217 PF00170 bZIP_1: bZIP transcri 22.8 2.1E+02 0.0046 18.2 9.0 40 147-186 23-62 (64)
218 PRK00888 ftsB cell division pr 22.0 3.1E+02 0.0067 19.7 6.7 35 9-43 29-63 (105)
219 PF10205 KLRAQ: Predicted coil 21.9 3.2E+02 0.0069 19.8 9.4 63 4-66 9-71 (102)
220 KOG4005|consensus 21.4 5E+02 0.011 21.9 7.7 38 9-46 99-136 (292)
221 KOG0018|consensus 21.3 9.2E+02 0.02 24.9 24.8 35 154-188 853-887 (1141)
222 PF03148 Tektin: Tektin family 21.2 5.9E+02 0.013 22.6 18.4 44 116-160 326-369 (384)
223 KOG0999|consensus 21.1 7.4E+02 0.016 23.7 24.4 96 20-115 106-220 (772)
224 PF04508 Pox_A_type_inc: Viral 21.0 1.5E+02 0.0032 15.5 2.7 18 173-190 3-20 (23)
225 PF06657 Cep57_MT_bd: Centroso 20.9 2.8E+02 0.0061 18.8 6.7 50 3-52 20-74 (79)
226 KOG4643|consensus 20.6 9.4E+02 0.02 24.8 27.1 52 3-54 411-462 (1195)
227 PF06008 Laminin_I: Laminin Do 20.4 5E+02 0.011 21.5 24.6 33 139-171 181-213 (264)
228 PF07058 Myosin_HC-like: Myosi 20.3 5.9E+02 0.013 22.3 17.0 43 145-187 117-159 (351)
No 1
>KOG0161|consensus
Probab=99.78 E-value=9.7e-17 Score=161.00 Aligned_cols=193 Identities=40% Similarity=0.504 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-------
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE------- 74 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE------- 74 (200)
+|++...++.+.+.++.+...++.|++++.+|+++++++..+++.....+..++++++.|+..+++|+...+.
T Consensus 1381 kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1381 KKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred --------------------------HHHHHHHHHHHHHH---HHH--------HHHHHHHHHHHHHHHH----------
Q psy17852 75 --------------------------AELDDERKQKAAAL---ASR--------KKYEADYKDMEQQLEM---------- 107 (200)
Q Consensus 75 --------------------------e~~e~~rk~l~~el---~~~--------~el~~~kk~lE~el~e---------- 107 (200)
+++.+.+++++.++ ..+ +++++.++.++.++.+
T Consensus 1461 aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1461 AQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888772 222 8899999999999777
Q ss_pred hhHHHHHH-----------------------------HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 108 NNKLKEDA-----------------------------LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQ 158 (200)
Q Consensus 108 ~~~~~ee~-----------------------------~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~q 158 (200)
++++.+++ -++++ .+|++++..|+.+.++++++.+.+|+|++|+++|+.+
T Consensus 1541 ~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~-~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ 1619 (1930)
T KOG0161|consen 1541 ALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQ-RQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQ 1619 (1930)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHH
Confidence 22222222 13788 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Q psy17852 159 LEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ 195 (200)
Q Consensus 159 Le~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~ 195 (200)
++++++.+.++.+.+++++.+++++|.+++++++++.
T Consensus 1620 ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~ 1656 (1930)
T KOG0161|consen 1620 LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRARE 1656 (1930)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.78 E-value=2.2e-20 Score=178.96 Aligned_cols=193 Identities=40% Similarity=0.504 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-------
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE------- 74 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE------- 74 (200)
.|+|...|.++...+++....+..|++.+++|+++++|+...++.....++.+++++++|+..+++|+..+++
T Consensus 323 KKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 323 KKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred --------------------------HHHHHHHHHHHHHHHH---H--------HHHHHHHHHHHHHHHH----------
Q psy17852 75 --------------------------AELDDERKQKAAALAS---R--------KKYEADYKDMEQQLEM---------- 107 (200)
Q Consensus 75 --------------------------e~~e~~rk~l~~el~~---~--------~el~~~kk~lE~el~e---------- 107 (200)
+.+++.++.++.++.. + +++++.++.||.++.+
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888322 2 8899999999999987
Q ss_pred hhHHHHHH-----------------------------HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 108 NNKLKEDA-----------------------------LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQ 158 (200)
Q Consensus 108 ~~~~~ee~-----------------------------~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~q 158 (200)
++...+++ .++++ .+|++|+..||.+.+.+..+.+.+++|+++|++|+.+
T Consensus 483 ~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q-r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ 561 (859)
T PF01576_consen 483 ALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ-RQLESLEAELEEERKERAEALREKKKLESDLNELEIQ 561 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 23778 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Q psy17852 159 LEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ 195 (200)
Q Consensus 159 Le~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~ 195 (200)
|++++++...+.+.+++++.+|+++|.+++++++++.
T Consensus 562 ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~ 598 (859)
T PF01576_consen 562 LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRARE 598 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999987764
No 3
>KOG0161|consensus
Probab=99.47 E-value=3.2e-11 Score=121.99 Aligned_cols=188 Identities=26% Similarity=0.364 Sum_probs=152.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH--------
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-------- 74 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-------- 74 (200)
+.+...+..+...+++....++.+.+.++.++.+++++..++.+.+.+++++++..+.++.++.+++..++|
T Consensus 1466 r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~e 1545 (1930)
T KOG0161|consen 1466 RQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAE 1545 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888899999999999999999999999999999999999999999999999998888887764
Q ss_pred --------------------------HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-------hhH
Q psy17852 75 --------------------------AELDDERKQKAAALASR-----------KKYEADYKDMEQQLEM-------NNK 110 (200)
Q Consensus 75 --------------------------e~~e~~rk~l~~el~~~-----------~el~~~kk~lE~el~e-------~~~ 110 (200)
++++..+++++..+.+- .++.+.||+|++++.+ +++
T Consensus 1546 E~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank 1625 (1930)
T KOG0161|consen 1546 EDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANK 1625 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 66777888888774422 7888888888888887 788
Q ss_pred HHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy17852 111 LKEDA---LKQLKKLQLREVEAELDDERKQKAAALASR-------KKYEADYKDMEQQLEMNNKLKEDALKQL------- 173 (200)
Q Consensus 111 ~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~-------kklE~el~ele~qLe~a~r~~~~a~k~~------- 173 (200)
...++ +++++ .+|+++|.++++..++..++..+. ..+++++.+|...++.+.|++..++..+
T Consensus 1626 ~~~d~~K~lkk~q-~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i 1704 (1930)
T KOG0161|consen 1626 ANEDAQKQLKKLQ-AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERV 1704 (1930)
T ss_pred hhHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888 67888 999999999999999999999665 4566777888888888888877776644
Q ss_pred --------------HHHHHHHHHHHHhhHHHH
Q psy17852 174 --------------KKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 174 --------------~~l~~~i~elq~~lee~~ 191 (200)
+++.+.|.-|+..+++..
T Consensus 1705 ~~~~~~~s~l~~~KrklE~~i~~l~~elee~~ 1736 (1930)
T KOG0161|consen 1705 NELNAQNSSLTAEKRKLEAEIAQLQSELEEEQ 1736 (1930)
T ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666654
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.36 E-value=8.7e-14 Score=133.84 Aligned_cols=189 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH--------
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-------- 74 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-------- 74 (200)
+.+.+++..|...+++....+..+++.++.|+.++.||.+++++++.++|.|++.++.++.++.+++..+++
T Consensus 408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~ 487 (859)
T PF01576_consen 408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE 487 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888888888888888888888888888888888888888888777777766653
Q ss_pred --------------------------HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-------hhH
Q psy17852 75 --------------------------AELDDERKQKAAALASR-----------KKYEADYKDMEQQLEM-------NNK 110 (200)
Q Consensus 75 --------------------------e~~e~~rk~l~~el~~~-----------~el~~~kk~lE~el~e-------~~~ 110 (200)
++++..|++++..+.+. +.+.+.|++||+++.+ +++
T Consensus 488 E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 488 EQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 68888899999884333 7889999999999988 666
Q ss_pred HHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17852 111 LKEDA---LKQLKKLQLREVEAELDDERKQKAAALASRK-------KYEADYKDMEQQLEMNNKLKEDALK--------- 171 (200)
Q Consensus 111 ~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~k-------klE~el~ele~qLe~a~r~~~~a~k--------- 171 (200)
...+. +++++ .+|+++|..+++..+.+.++..... .|.+++.+++..++.+.+++..|+.
T Consensus 568 ~~~e~~k~~kk~q-~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~ 646 (859)
T PF01576_consen 568 ANEEAQKQLKKLQ-AQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERL 646 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666 67888 9999999999999999988876653 4445555555555555555444444
Q ss_pred ------------HHHHHHHHHHHHHHhhHHHHH
Q psy17852 172 ------------QLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 172 ------------~~~~l~~~i~elq~~lee~~~ 192 (200)
..+++.+.|..|+.+|||...
T Consensus 647 ~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~ 679 (859)
T PF01576_consen 647 NELTSQNSSLSEEKRKLEAEIQQLEEELEEEQS 679 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666543
No 5
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.54 E-value=0.037 Score=45.97 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
-.++..+..|...|..+......|++.+..|+..|..|...|....
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666665543
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=97.53 E-value=0.083 Score=51.57 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhccC
Q psy17852 151 DYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNTC 199 (200)
Q Consensus 151 el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~~~ 199 (200)
++.++...+..+......+...+..+++.+..+...++.....-..++|
T Consensus 406 ~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C 454 (880)
T PRK02224 406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC 454 (880)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3344444455555555555566666666666666666666544455666
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.36 E-value=0.064 Score=44.54 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
+.+. ..++.|+...+.....-.......+.|...+.+++...+.+.+....+++.+..+...+......+
T Consensus 151 ~~~~-~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 151 KSVG-NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 445555555555555555555566666666666666666666666666666655555555444333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.30 E-value=0.22 Score=49.45 Aligned_cols=54 Identities=31% Similarity=0.501 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK 57 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~ 57 (200)
.+..++..+...+..+...+..+......+..++..+...+......+..+...
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 727 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ 727 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666555555555555555555544444443333
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.29 E-value=0.18 Score=48.28 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR 59 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r 59 (200)
+|+|..+|+.....=.+++.++..+.-.-+.+..+|..+..+.+.....++.|...+.
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777888887777766677888888888888888777777765543
No 10
>KOG0977|consensus
Probab=97.08 E-value=0.2 Score=46.47 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
.+|..|...|....+++-.|+-.++.|+.++..|..-+..
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~ 81 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR 81 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4566677777777777777777777777776666655544
No 11
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=96.96 E-value=0.023 Score=37.36 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 126 EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA 184 (200)
Q Consensus 126 elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq 184 (200)
+||+.|+.+.+++..+....++..+..-.++..|.++...+..+...+..+..++.+++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999988888888888777887777777766666666666655555554
No 12
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.28 Score=44.12 Aligned_cols=69 Identities=7% Similarity=0.144 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+..++..+..++......+..+......++.++..+..++......+..++.....++..+..++..+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555554444443
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.80 E-value=0.77 Score=47.13 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
..+..+..++..++...+..+..+...++.++.+|..|+.+|++
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56788888899999999999999999999999999999999965
No 14
>KOG0977|consensus
Probab=96.64 E-value=0.57 Score=43.48 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---------H
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV---------E 74 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e---------E 74 (200)
.+.+++..+...+++.....+.++..-.+|..++.++...+++....+.........+..-+..+...+. +
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3567888888888888888889998888999999999888888866555444444433333333332221 1
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhh---------HHHHHHHhhHH
Q psy17852 75 --------------AELDDERKQKAAALASRKKYEADYKDM-----------EQQLEMNN---------KLKEDALKQLK 120 (200)
Q Consensus 75 --------------e~~e~~rk~l~~el~~~~el~~~kk~l-----------E~el~e~~---------~~~ee~~r~l~ 120 (200)
.++...++.+..+.-.+..++-...-| +++|.+.. ...+..-..|.
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~ 248 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELA 248 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHH
Confidence 333344444443311111111111111 12222200 00000012667
Q ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 121 KLQLREVEAELDDERK-QKAAALASRKK------------------YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181 (200)
Q Consensus 121 ~~qi~elq~~Leee~r-~r~e~~~~~kk------------------lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~ 181 (200)
..|+++.++.|.-.+ .|.++...++. .--++..+...+.......++++..-..|..+|.
T Consensus 249 -~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 249 -LAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIE 327 (546)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHH
Confidence 778888888866544 46655555421 2244555666666666666777777777777888
Q ss_pred HHHHhhHHHHH
Q psy17852 182 EKAKRLLESQL 192 (200)
Q Consensus 182 elq~~lee~~~ 192 (200)
+|..++++.++
T Consensus 328 dL~~ql~e~~r 338 (546)
T KOG0977|consen 328 DLEYQLDEDQR 338 (546)
T ss_pred HHHhhhhhhhh
Confidence 88888777654
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=96.54 E-value=0.89 Score=44.45 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy17852 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEE 68 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~ 68 (200)
.+.....+..+++....++.++.++...+......++.++.....+..++.++
T Consensus 344 ~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555554444444444444444444443
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.03 E-value=0.84 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~ 42 (200)
+..|...+....+++..|+..++.|+.++..+..
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3344444444444444444444444444443333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.75 E-value=2.7 Score=42.72 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=49.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE 194 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~ 194 (200)
..|..++..+.+.......+......++..+..+..+++........+...+..+.....++..++.+.....
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555556667777777777777777777888888888888887777777765544
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.65 E-value=1.9 Score=40.18 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhHhhcc
Q psy17852 172 QLKKLQVHELEKAKRLLESQLAEQKNT 198 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~~~~~~~ 198 (200)
.+.+|...+..+...|.+.+..|+|-+
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~ 398 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLE 398 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777788877777654
No 19
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.60 E-value=1.3 Score=37.92 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
.++..+...+++...++......+..++.++..+...++........++.....+..++.-
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444433
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.60 E-value=3.1 Score=42.32 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHh
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITID 43 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~ 43 (200)
.++..+...+......+..+......+...+.++...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1163)
T COG1196 674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333333333333333
No 21
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=95.49 E-value=0.18 Score=36.44 Aligned_cols=62 Identities=26% Similarity=0.425 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 130 ELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 130 ~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
.|.++...+..+...+..+++++.+|...| ++||+..+.+.+..-.++.....|..++.+..
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999999 99999999999988888888888888887754
No 22
>PRK11637 AmiB activator; Provisional
Probab=95.17 E-value=2.3 Score=38.27 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+.+..++..+...+.........++.....+..++..+...+......+..++.....++..+..++..+.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666665555544
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.92 E-value=5.3 Score=41.16 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDI 40 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl 40 (200)
.++..+...++.+...++.+......+..++..|
T Consensus 829 ~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 24
>KOG0996|consensus
Probab=94.44 E-value=6.3 Score=39.81 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK 57 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~ 57 (200)
+...+..+.+++-.++..+..++-...++..++..+...+......+.+++..
T Consensus 797 ~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 797 HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666667666666666666666666654
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.73 E-value=7.3 Score=37.98 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALAS-------RKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~-------~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.|+ ..|+.|...|+.....-+....+ +..+.+++.+|...++...+..+.+.+.+-.|...+.+=..++++.
T Consensus 340 ~Lq-sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~ 418 (775)
T PF10174_consen 340 MLQ-SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE 418 (775)
T ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 66777777776665554444433 4556677777777777777777777777777777776666666554
Q ss_pred H
Q psy17852 191 Q 191 (200)
Q Consensus 191 ~ 191 (200)
.
T Consensus 419 k 419 (775)
T PF10174_consen 419 K 419 (775)
T ss_pred H
Confidence 4
No 26
>KOG0971|consensus
Probab=93.55 E-value=8.3 Score=38.08 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 162 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a 162 (200)
.+.-...++.+-.+.+.-+.+..-.+|+.+.+|+.|++.+
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555556666666666666654
No 27
>KOG0971|consensus
Probab=93.54 E-value=8.4 Score=38.07 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++..++.-....+++..+.+..+.+.+..++..|.+|++|+|-+
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555566677777777788888888888888888888764
No 28
>PRK09039 hypothetical protein; Validated
Probab=93.23 E-value=5.5 Score=35.01 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 127 VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 127 lq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
++..|......-.++......+..++..|+.|+...+...+.++......+.+|.+|...|+..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433334444444444444444444444444444444444444444444444444433
No 29
>KOG0996|consensus
Probab=93.18 E-value=11 Score=38.24 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~ 197 (200)
..+.+++..|........+-......+...+..+...+..+.+....+-+..+.+..++..+...++|...+-++.
T Consensus 521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5577788888777776666666667777888888888888888888888888888888888888888877755543
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.91 E-value=9.9 Score=37.12 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
...+-.+-.|+++++.|...++.....+.......-.+..+++-
T Consensus 332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666666555544444333333333333
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.78 E-value=7.2 Score=35.20 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
+.++.+|..+...+.........|++..+.+..++..+..++-.....+..+.+.+.-++..+..+..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777766666666666666655555444
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.54 E-value=8.6 Score=35.47 Aligned_cols=35 Identities=3% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 35 SELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 35 ~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
..+.++...++........++.....+...+..+.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444454444444444444444444444443
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.44 E-value=3.9 Score=31.35 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
+.|.-|+..|+........+ ...+.++....++..|....++.....+...+.+|..++.+
T Consensus 80 rriq~LEeele~ae~~L~e~-------~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKET-------TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455555554444333332 22233334444444555555555555555555555555544
No 34
>KOG4674|consensus
Probab=92.30 E-value=18 Score=38.51 Aligned_cols=65 Identities=18% Similarity=0.380 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
+.++..+..|...+.+.......+.-...--...+..|...++...+.+..|......|...+..
T Consensus 657 ~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~ 721 (1822)
T KOG4674|consen 657 KKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISK 721 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444444445555555555555555555444445444443
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.06 E-value=11 Score=35.45 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=63.0
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ----------LKKLQVHELEKAK 185 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~----------~~~l~~~i~elq~ 185 (200)
+..+. ..|+.|-..++.+..++..+.+...++...+..+..+..........+... .+.+..+++.+..
T Consensus 284 ~~~i~-~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 284 NEEIQ-ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence 45777 889999999999999999999999889888888888888888877777777 7788888888888
Q ss_pred hhHHHHH
Q psy17852 186 RLLESQL 192 (200)
Q Consensus 186 ~lee~~~ 192 (200)
.+.....
T Consensus 363 ~~~~~~~ 369 (569)
T PRK04778 363 QYDEITE 369 (569)
T ss_pred HHHHHHH
Confidence 7775543
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.03 E-value=11 Score=35.34 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q psy17852 14 REKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV 51 (200)
Q Consensus 14 ~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~ 51 (200)
..++........|.+.+..|+.++..+...++.....+
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444433333
No 37
>KOG0612|consensus
Probab=91.99 E-value=16 Score=37.26 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK 196 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~ 196 (200)
.++.++...|.++.-++..+.....++++++.-|...+-.+.-....+.+........+..|+.+|+.+..+|+.
T Consensus 700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~ 774 (1317)
T KOG0612|consen 700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLS 774 (1317)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467777777777777776666666666666666666665555455555555556666666666666666665543
No 38
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.90 E-value=3.8 Score=29.92 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHE 180 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i 180 (200)
.++..|+..|+...-+..++..++..|.+-+..|+.+.......+.+++..+..+-..+
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777666666666666665555554444444444443333333
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.81 E-value=17 Score=37.27 Aligned_cols=64 Identities=11% Similarity=0.261 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
.|..++..+...+......+..+++.-+.....+..+...+..........+.....+......
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 667 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQ 667 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555544444444333333333333333
No 40
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=91.48 E-value=2.3 Score=30.75 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=43.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 15 EKEELQALNDKLEKSKKKLQSELDDITIDL-ETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 15 ~lee~~~~~~~ler~kk~L~~El~dl~~~l-e~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
.+......+..++..+.++..|+++|+..| ++++..++.--+..-.++.....+...+.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999998 66787776655445455555444444443
No 41
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.86 E-value=6 Score=30.33 Aligned_cols=139 Identities=22% Similarity=0.329 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy17852 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALA 89 (200)
Q Consensus 10 ~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~ 89 (200)
..|.-..+.+..+...++...+.|..+...+-..+......+..++...-.++..+.+.+..+++..-. ..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~---------~~ 73 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR---------KS 73 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HH
Confidence 344445555556566665555555555555555555544444444444444444445444444432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 90 SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 162 (200)
Q Consensus 90 ~~~el~~~kk~lE~el~e~~~~~ee~~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a 162 (200)
....+.+.+.-||.+++. .+..++-.. ..+++.....+...|....+....-.++..+..|..++..+
T Consensus 74 ~~E~l~rriq~LEeele~----ae~~L~e~~-ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEELEE----AEKKLKETT-EKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred hHHHHHhhHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 002344555555555533 111133333 44555555555555555555555555555555555555443
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.20 E-value=7.6 Score=28.98 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+-+|+..|..+..++..+...+..+...+..+..|+-.++...+........+ ..+..++.++..+++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~----~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEV----EELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999888876554443 466666777776665
No 43
>KOG0933|consensus
Probab=88.97 E-value=27 Score=35.04 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 125 ~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
..|+.++......-.........+.+++.++...+..+..-...++..+...
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444344333333333
No 44
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.47 E-value=8.5 Score=31.94 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=62.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
....++...+++..+.+.++..-.-.+++++++++..|.......+.+..+++++-+.+.+|...+++-
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 556777888899999999999999999999999999999999999999999999999999998887764
No 45
>KOG0612|consensus
Probab=88.13 E-value=33 Score=35.06 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852 144 SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK 196 (200)
Q Consensus 144 ~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~ 196 (200)
...+++..+.-++..+++.+...... .+..-..++.++...|.++..+|.|
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k 718 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREK 718 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHH
Confidence 34456666666777776665555544 3333367888888888888888765
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.03 E-value=34 Score=35.11 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 11 VLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 11 ~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
.|...+..+...+..+......++..+......+......+..........+..+..++
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444555554444444444444444444444444444433333333333333333
No 47
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.87 E-value=27 Score=33.80 Aligned_cols=104 Identities=25% Similarity=0.272 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-HHHHHHHHHH
Q psy17852 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-AELDDERKQK 84 (200)
Q Consensus 6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-e~~e~~rk~l 84 (200)
..+++.|.....++...+..++..+.+|..++.++...=...-....+|+..+-.+.+.+.-++..-.| +.+..+.+.+
T Consensus 54 ~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl 133 (717)
T PF09730_consen 54 QAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444555555555556666666666666666666665555666667777777777777776654443 5566666667
Q ss_pred HHH---HHHH-HHHHHHHHHHHHHHHHhh
Q psy17852 85 AAA---LASR-KKYEADYKDMEQQLEMNN 109 (200)
Q Consensus 85 ~~e---l~~~-~el~~~kk~lE~el~e~~ 109 (200)
..+ +.++ .++.+.|.=.|.++++|+
T Consensus 134 ~Ee~~~l~~qlee~~rLk~iae~qleEAL 162 (717)
T PF09730_consen 134 EEEIELLNSQLEEAARLKEIAEKQLEEAL 162 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 5555 678888888888888833
No 48
>KOG0976|consensus
Probab=87.49 E-value=31 Score=33.96 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~ 66 (200)
+...+..+..++-.+..+|..++-.+..|+.-+.-+.+++......+..+...-..++.++.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34455566667777777777777777777777777766666655555444433333333333
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.09 E-value=12 Score=28.74 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 30 KKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 30 kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
...|..+++.++..+......+..+-..+..+++.+..++.++.
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
No 50
>KOG0964|consensus
Probab=86.69 E-value=37 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASR 145 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~ 145 (200)
+.++. ..|+.|...+..-...+-++...+
T Consensus 787 l~kLn-~eI~~l~~kl~~~~~er~~~~~rk 815 (1200)
T KOG0964|consen 787 LSKLN-KEINKLSVKLRALREERIDIETRK 815 (1200)
T ss_pred HHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 666666666665555554444333
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=86.51 E-value=34 Score=33.45 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q psy17852 168 DALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 168 ~a~k~~~~l~~~i~elq~~le 188 (200)
.+...+..+...+.+|...++
T Consensus 409 ~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 409 KITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.45 E-value=29 Score=32.57 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 5 QKKENEVLEREKEELQALN-----DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~-----~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+..+|..+...+......+ ...+.....+...++.|...++....+....++....+...+...+....
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~ 327 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK 327 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566677777776644443 45556677888888888888888888888888888777777776665444
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.95 E-value=35 Score=33.09 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH------------HHHHHHHHHHHH
Q psy17852 19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE------------AELDDERKQKAA 86 (200)
Q Consensus 19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE------------e~~e~~rk~l~~ 86 (200)
+..++..|+-.-+.+..+++......+.......++-+....++.+...++..+-+ .+++.++-.|+.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444333333322 456666666666
Q ss_pred H
Q psy17852 87 A 87 (200)
Q Consensus 87 e 87 (200)
.
T Consensus 112 q 112 (717)
T PF09730_consen 112 Q 112 (717)
T ss_pred H
Confidence 6
No 54
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.55 E-value=14 Score=30.66 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-------HHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 10 EVLEREKEELQALNDKLEKSK-------KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 10 ~~l~~~lee~~~~~~~ler~k-------k~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE 74 (200)
.++++.+++...++.++.+.+ -.|+++++++...+.......+.|+...+++.-++..++.++++
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 345555555555555554444 44455555555555555555555555555666666666666664
No 55
>KOG0933|consensus
Probab=85.47 E-value=43 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=30.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el 183 (200)
...-|+.+.++..+...-...+.-.++..+..+..++.........+.....+++..+++.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3444455555555555544444445555555555555555555555555555555554443
No 56
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.79 E-value=11 Score=24.71 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852 137 QKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 137 ~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~ 192 (200)
+...=++.+..+..+|+.+....-.+.....++....+.|..+|..|..++++.+.
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455677788899999999999999999999999999999999999999998764
No 57
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.05 E-value=48 Score=31.61 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=5.7
Q ss_pred chHHHHHHHHHHHH
Q psy17852 3 FKQKKENEVLEREK 16 (200)
Q Consensus 3 k~L~~~l~~l~~~l 16 (200)
+.|+.+-+.+...+
T Consensus 7 ~qlq~Erd~ya~~l 20 (617)
T PF15070_consen 7 KQLQAERDQYAQQL 20 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.65 E-value=9.2 Score=23.42 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDL 44 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~l 44 (200)
|.|......|....+.+....+.|.+.+..|..++..|...+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888888888888888888887776544
No 59
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.92 E-value=14 Score=24.73 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el 65 (200)
.|.+.+..|...++-+..++...+-..+.|..|-+-+..++..+...+..|-...-.+..++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999998888888888889999888888888877766666554444444433
No 60
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.62 E-value=12 Score=24.84 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
.||..+.-.+..++..|.....-++.+..++.++..|...+.+..
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555555555555666666666666665555543
No 61
>KOG0994|consensus
Probab=80.18 E-value=76 Score=32.72 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=33.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKD-------MEQQLEMNNKLKEDALKQLKKLQVHELEKA 184 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~e-------le~qLe~a~r~~~~a~k~~~~l~~~i~elq 184 (200)
.++++....|++..++-..+....+-.-.++.. .+..+..+++....+.+++.+|...+.+|+
T Consensus 1563 ~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1563 GQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777776666666665555444444333 444444444444444444444444444444
No 62
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.16 E-value=51 Score=30.66 Aligned_cols=139 Identities=24% Similarity=0.303 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH--HhhhhHHHHHHHHHhhH-------
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK--QRNFDKVLAEEKLREVE------- 74 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~--~r~~e~el~e~k~~~eE------- 74 (200)
..+.+|.-+.+.+..+..++...+..+-+.-.||+....-+++....+...... .-.-+.++..++..-.+
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~ 110 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA 110 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc
Confidence 356677777788888888877777777777777766666666655544322211 11122233333321111
Q ss_pred -----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---hhHHHHHH----------HhhHHHHHHHHHHhhhH
Q psy17852 75 -----AELDDERKQKAAALASR----KKYEADYKDMEQQLEM---NNKLKEDA----------LKQLKKLQLREVEAELD 132 (200)
Q Consensus 75 -----e~~e~~rk~l~~el~~~----~el~~~kk~lE~el~e---~~~~~ee~----------~r~l~~~qi~elq~~Le 132 (200)
.+++..+..+...+... .+|.+.+..+..-++. +....+++ .--|. ..|..+...|+
T Consensus 111 ~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~-~Ei~~lke~l~ 189 (522)
T PF05701_consen 111 SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELS-KEIIALKESLE 189 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 23344444444442222 5666666666665554 44444444 12444 45555555555
Q ss_pred HHHHHHHHHHH
Q psy17852 133 DERKQKAAALA 143 (200)
Q Consensus 133 ee~r~r~e~~~ 143 (200)
...-...++..
T Consensus 190 ~~~~a~~eAee 200 (522)
T PF05701_consen 190 SAKLAHIEAEE 200 (522)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 63
>PRK04406 hypothetical protein; Provisional
Probab=79.57 E-value=16 Score=24.88 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
||..+.-.+..++..|......++.+..++.++..|..++.+
T Consensus 16 LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 16 LECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444455555555555555555555555555555544
No 64
>PRK01156 chromosome segregation protein; Provisional
Probab=79.26 E-value=68 Score=31.61 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh----hccC
Q psy17852 162 NNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ----KNTC 199 (200)
Q Consensus 162 a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~----~~~~ 199 (200)
...-...+...+..+...+.++...+++-..+.. .++|
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~C 455 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVC 455 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 3344566666677777777777776666554433 4555
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.26 E-value=36 Score=28.46 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 11 VLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 11 ~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
.+--.++.+.-...+..+.-.++..+++.+...+.........++.....++.++.+++.+..
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555666777777777777777777777777777777777777766555
No 66
>KOG0976|consensus
Probab=79.13 E-value=70 Score=31.66 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=9.6
Q ss_pred HHHHHHHhhhHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKA 139 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~ 139 (200)
.-|+.++..|++....+.
T Consensus 291 elVk~~qeeLd~lkqt~t 308 (1265)
T KOG0976|consen 291 ELVKELQEELDTLKQTRT 308 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566655555443
No 67
>KOG4673|consensus
Probab=78.38 E-value=68 Score=31.10 Aligned_cols=50 Identities=6% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASR----KKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~----kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
..|.+||..|....+...++..++ +=|=..+..|+..|..+-.++...++
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~ 665 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREER 665 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 557777777776666666665555 33445555566665555444444333
No 68
>PRK00295 hypothetical protein; Provisional
Probab=78.32 E-value=15 Score=24.49 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
-.||..+.-.+..++..|.....-++.+..++.++..|..++.+.
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555556666666666666666666666666666655554
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.22 E-value=69 Score=31.07 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
.+..+|..++...+.+..+++.|.+.++.=-. .+..++..+.+..+.+..+|++|.+.+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq-------~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQ-------SLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655532222 222333334444444445555555544
No 70
>KOG1899|consensus
Probab=78.00 E-value=67 Score=30.80 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=55.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYE 95 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~~el~ 95 (200)
..+..++++.|+..|--|+..++-|+.+++..+.. ++-++..+++.+.++.- .-..+|.++-+.+.|+
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEK-------IrDLE~cie~kr~kLna-----tEEmLQqellsrtsLE 173 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEK-------IRDLETCIEEKRNKLNA-----TEEMLQQELLSRTSLE 173 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhh-------HHHHHHHHHHHHhhhch-----HHHHHHHHHHhhhhHH
Confidence 45778888899999998988888888888776644 45555566666655441 1224566666667777
Q ss_pred HHHHHHHHHHHH
Q psy17852 96 ADYKDMEQQLEM 107 (200)
Q Consensus 96 ~~kk~lE~el~e 107 (200)
..|=.|-.++.+
T Consensus 174 TqKlDLmaevSe 185 (861)
T KOG1899|consen 174 TQKLDLMAEVSE 185 (861)
T ss_pred HHHhHHHHHHHH
Confidence 777777777766
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.18 E-value=16 Score=24.56 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
-.||..+.-.+..++..|......++.+..++.++..|..++.+.
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555666666666666666665555543
No 72
>PRK09039 hypothetical protein; Validated
Probab=77.00 E-value=51 Score=28.94 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy17852 148 YEADYKDMEQQLEMN 162 (200)
Q Consensus 148 lE~el~ele~qLe~a 162 (200)
....+.++...|..+
T Consensus 170 ~~~~i~~L~~~L~~a 184 (343)
T PRK09039 170 SQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 73
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.68 E-value=38 Score=27.32 Aligned_cols=153 Identities=25% Similarity=0.327 Sum_probs=81.0
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy17852 32 KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASR-----------KKYEADYKD 100 (200)
Q Consensus 32 ~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~-----------~el~~~kk~ 100 (200)
.|..++.++...+++....+..|-.-+.+.+..+..+... +..++..-..|..++..- ..+.+..+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~--e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDT--EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655555555555554332221 123333333333331111 233333333
Q ss_pred HHHHHHH---hhHH----HHHH----HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 101 MEQQLEM---NNKL----KEDA----LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169 (200)
Q Consensus 101 lE~el~e---~~~~----~ee~----~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a 169 (200)
.+.++-- .++. .+++ .-.++ ..+..+...+++..+.-..+ -+.++-..+.+..++....+....+
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL~eReeL~-~kL~~~~~~l~~~~~ki~~L---ek~leL~~k~~~rql~~e~kK~~~~ 169 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNLAEREELQ-RKLSQLEQKLQEKEKKIQEL---EKQLELENKSFRRQLASEKKKHKEA 169 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333321 1100 0000 11344 44555555554444433332 2456666677888888888888999
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q psy17852 170 LKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 170 ~k~~~~l~~~i~elq~~lee~ 190 (200)
...+..++..|..|...+-|-
T Consensus 170 ~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 170 QEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877664
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.58 E-value=1e+02 Score=32.23 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~ 42 (200)
|..|..+|..+..++......+..+......|..+...+-+
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps 784 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELAGAPS 784 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45567777777777777777777777777777777655544
No 75
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.57 E-value=41 Score=27.17 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
.-...|..+..-+...++..+-...+|..++.+|..++......++ ..+.++.++.+++.
T Consensus 15 ~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~----~aK~l~eEledLk~ 74 (193)
T PF14662_consen 15 LNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ----KAKALEEELEDLKT 74 (193)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3334444444444555555555666666666666666665542221 22455555555554
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.42 E-value=0.91 Score=43.66 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k 171 (200)
.++-++..++..+..+.+.+..+..
T Consensus 388 ~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 388 KLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444444444433
No 77
>PRK02119 hypothetical protein; Provisional
Probab=75.32 E-value=20 Score=24.27 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.||..+.-.+..++..|.....-++.+..++.++.-|..++.+.
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555555555666666666666666666666665555543
No 78
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=74.71 E-value=23 Score=23.84 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 140 AALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 140 e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
+..++.+.++....+++..++.+.+..+.+...+..|..++..|-.+++
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999999999999999999999888887775
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.66 E-value=39 Score=26.96 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 17 ee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
-....-+..+.+.+..+...|-++...+................+..++..++..+
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555444444444444444444433
No 80
>KOG4674|consensus
Probab=74.40 E-value=1.3e+02 Score=32.41 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 11 VLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 11 ~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
.+...+..+...+..+......|+..+.+|...+..
T Consensus 848 ~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 848 ELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444443333
No 81
>PRK00846 hypothetical protein; Provisional
Probab=74.34 E-value=23 Score=24.29 Aligned_cols=46 Identities=15% Similarity=-0.070 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
-.||..+.-.+..++..|......++.+..++.++.-|-..|.+.+
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555666666666666666666666666666666666654
No 82
>PRK00736 hypothetical protein; Provisional
Probab=73.90 E-value=23 Score=23.58 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
-.||..+...+..++..|.....-++.+..++.++.-|..++.+..
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666666677777777777777777777777766666543
No 83
>PRK04325 hypothetical protein; Provisional
Probab=73.77 E-value=24 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 145 RKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 145 ~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
.-.||..+.-.+..++..|.....-++.+..++.++.-|..++.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666666666666666666677777777777766665543
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.99 E-value=33 Score=26.64 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhH--HHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDL--ETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~l--e~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
++..+...+.++...+..+....+.|..++..|.+.+ ++....+..+......++..+..++.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777777778888888888888888888775 44555566666666666666665554
No 85
>KOG0249|consensus
Probab=72.94 E-value=97 Score=30.23 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 129 AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA 184 (200)
Q Consensus 129 ~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq 184 (200)
..|....+.+..+..-+..|..++.-+..+|+..++.+..+......|.+++..|.
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444455555555556667777777777777777777777777666666666665
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.37 E-value=81 Score=28.65 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
+......++.....+....+....|+.+|.++...+......+........++.+.+......+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3334444444444444444445555555555555555544444444444444444444444433
No 87
>KOG0964|consensus
Probab=71.36 E-value=1.2e+02 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 164 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r 164 (200)
.+..-++-.+++......+....++.++..++++...++....
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~ 453 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDA 453 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH
Confidence 3344555556666666566666666676666666666655533
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.05 E-value=69 Score=27.72 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKA-------AALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~-------e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~ 181 (200)
+.+ .+|++++..+-.+...-. .+..-...++++..-|+.||++|..-...-++.+...+.+..
T Consensus 190 Qtq-~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~ 259 (305)
T PF14915_consen 190 QTQ-CQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQ 259 (305)
T ss_pred HHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555 667777766633322111 112223567788888899999997777766666666665553
No 89
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.44 E-value=70 Score=27.59 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 155 MEQQLEMNNKLKEDALKQLKKLQVHELE 182 (200)
Q Consensus 155 le~qLe~a~r~~~~a~k~~~~l~~~i~e 182 (200)
+....+........+...++.+...|+.
T Consensus 219 ~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 219 LSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444433333
No 90
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.19 E-value=56 Score=26.72 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQS----ELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~----El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
..+..+...+......++.+.+.++.-|. ++..|...+.+.-..+.+++.....++.++..++
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433332 2333333344444444444444444444444433
No 91
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=69.88 E-value=45 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVV 52 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~ 52 (200)
|.|+.-+..+..+++.+.+ .|..+|+.|...|+.+-..+++......
T Consensus 39 r~m~~A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred HhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5566666666666666655 5566777777777777777766544433
No 92
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.12 E-value=65 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 154 DMEQQLEMNNKLKEDALKQLKKLQV 178 (200)
Q Consensus 154 ele~qLe~a~r~~~~a~k~~~~l~~ 178 (200)
..+..++..++....+......+..
T Consensus 81 ~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 93
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.63 E-value=62 Score=25.84 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=47.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
.|+++=..|+++++.... |..=..-|+.+|+++...+..+...+.++.+.+.-++..|+.-.
T Consensus 61 dLe~~l~rLeEEqqR~~~-------L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEE-------LAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred cHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777765554 33334458999999999999999999999999999888887543
No 94
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.47 E-value=83 Score=27.24 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 4 KQKKENEVLEREKEELQALN----DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~----~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
++-..|.-+++-.+++...+ +.|-+..-.-.+++..|+.........+..--..+-+++.++..++..+.
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLa 101 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLA 101 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433 23444444555566666655555544443333334466666666665554
No 95
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.96 E-value=1.8 Score=41.59 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEAD 151 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~e 151 (200)
.+|.+|+..+.++......+.-....+...
T Consensus 370 ~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek 399 (713)
T PF05622_consen 370 KQIQELEQKLSEESRRADKLEFENKQLEEK 399 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655555444433333333333
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=66.10 E-value=70 Score=25.88 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 17 ee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
.++...+..|+-.+++|..+..-|...++-.....+.|....-.+...+..++
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778888888888888877777766655555544444444444443
No 97
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.92 E-value=50 Score=24.14 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 159 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL 159 (200)
..|.++-..++.+.-++.++...+-+.+.+.+-++-.|
T Consensus 65 aki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 65 AKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44444444444444444444444444554444444433
No 98
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.55 E-value=1.9e+02 Score=30.73 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
++.-..+.+..+++.+-..+.+......++.+...|...+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~ 596 (1486)
T PRK04863 556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443
No 99
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.37 E-value=64 Score=25.70 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q psy17852 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV 51 (200)
Q Consensus 10 ~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~ 51 (200)
..+...+......+..+......|...+.++...+.+-...+
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444333333
No 100
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.46 E-value=89 Score=27.27 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
...+ ..+.+++..|..-.....++...+..++.++..++..|..|.+...-+..+...+...+..+..++
T Consensus 238 ~~~~-~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 238 AEKQ-AELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQL 307 (344)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHh
Confidence 3444 445555555555555555555566666666666666666666666666665555555555554443
No 101
>KOG0709|consensus
Probab=64.25 E-value=19 Score=32.83 Aligned_cols=77 Identities=25% Similarity=0.409 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASR----KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~----kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
++... +-|+..+..=+.-++. .+.+... -..-++..+|..++++.+.....+..+++++|..+...-.
T Consensus 250 LKrvR-RKIrNK~SAQESRrkK-keYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an------ 321 (472)
T KOG0709|consen 250 LKRVR-RKIRNKRSAQESRRKK-KEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN------ 321 (472)
T ss_pred HHHHH-HHHHhhhhhHHHHHhH-hhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc------
Confidence 55555 5566665554333332 2222222 3344566777888888888888888888888887765443
Q ss_pred HhHhhccCC
Q psy17852 192 LAEQKNTCL 200 (200)
Q Consensus 192 ~~~~~~~~~ 200 (200)
.+-|.+||+
T Consensus 322 ~s~qt~tC~ 330 (472)
T KOG0709|consen 322 KSTQTSTCL 330 (472)
T ss_pred chhccchhH
Confidence 777888885
No 102
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.05 E-value=42 Score=22.63 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 17 ee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
+.+..++..+--...-|+.++++|.............|......+..+...|+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555444444444444444444444444444
No 103
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=62.50 E-value=36 Score=23.55 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q psy17852 31 KKLQSELDDITIDLETQRAKVVDLEKKQ 58 (200)
Q Consensus 31 k~L~~El~dl~~~le~~~~~~~~lek~~ 58 (200)
..|+.-|.+|...++.....+..|....
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN 53 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESEN 53 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333333
No 104
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.41 E-value=97 Score=26.37 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~e 64 (200)
+..-+..+...+......++++......|...++--..+++.....+..|...+..|-.+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdE 226 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDE 226 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 334444555555555555555555555555555555555555555555555444444433
No 105
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=62.20 E-value=42 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYE 149 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE 149 (200)
.|.+|+..|+-+.+.+..+..-.+.+.
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~ 28 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYS 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478899999999999999888877653
No 106
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.78 E-value=47 Score=22.42 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHE 180 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i 180 (200)
.+|..|....+.-.+.-.......++|-..+.+++.++.........+...+..+...+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667776666666666666667777777777777777777766666666666555544
No 107
>KOG1003|consensus
Probab=61.65 E-value=87 Score=25.47 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
..++-+...|..-...-..+....-.++..++.+..-|-.+......+.+.+.+|+..+.+|...+..
T Consensus 116 Ee~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 116 EDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 33444444444333333333333344455555555555555555555555555555555555544443
No 108
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.62 E-value=87 Score=25.50 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=5.5
Q ss_pred HHHHHHHhhhHH
Q psy17852 122 LQLREVEAELDD 133 (200)
Q Consensus 122 ~qi~elq~~Lee 133 (200)
.++.+++..|..
T Consensus 100 ~el~~l~~~l~~ 111 (206)
T PRK10884 100 NQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 109
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.26 E-value=50 Score=28.83 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhh
Q psy17852 26 LEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62 (200)
Q Consensus 26 ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e 62 (200)
....+..|+.++......++.+..-+..|...+-++.
T Consensus 261 ~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 261 AQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 3333333444444333334444333333333333333
No 110
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.16 E-value=94 Score=25.70 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=43.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 18 ELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 18 e~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
.+...++..+-..+-|..-|.|....+..+...+..+-..++.|+..+........
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~ 69 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666778888899999999999988888888888888888877666544
No 111
>KOG4593|consensus
Probab=61.14 E-value=1.6e+02 Score=28.46 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHH-------hhHHHHHHHhhHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 92 KKYEADYKDMEQQLEM-------NNKLKEDALKQLKK--LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 162 (200)
Q Consensus 92 ~el~~~kk~lE~el~e-------~~~~~ee~~r~l~~--~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a 162 (200)
+++...+|.+...+.. .+....|..++..+ ...+-+...+.-..+.+..+...+........+++..+++.
T Consensus 380 te~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~ 459 (716)
T KOG4593|consen 380 TEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEEL 459 (716)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHH
Confidence 5556666666665554 22333333332220 33555666666666667777777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 163 NKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 163 ~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.+....-.+.+-++...+++|+.+|...
T Consensus 460 ~~~i~~~k~~~e~le~~~kdL~s~L~~~ 487 (716)
T KOG4593|consen 460 YREITGQKKRLEKLEHELKDLQSQLSSR 487 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887654
No 112
>PF15294 Leu_zip: Leucine zipper
Probab=59.94 E-value=1.1e+02 Score=26.18 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH--HHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV--VDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~--~~lek~~r~~e~el~e~k~~~eE 74 (200)
|..|+.+...|+..+-.+...+...-+.+..|+..|.++........+.. ..-......++..++.++..++.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH
Confidence 55677777777777777777888887888888888888888444433311 11112223455555555555543
No 113
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.26 E-value=1.7e+02 Score=27.93 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh
Q psy17852 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR 59 (200)
Q Consensus 6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r 59 (200)
..++.++..+++++...+..++...+.+...+..+...+.........++....
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777666666666666554443
No 114
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.57 E-value=1.2e+02 Score=26.05 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 92 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 92 ~el~~~kk~lE~el~e~~~~~ee~~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
+.+.+.|.+.+.+..+. -.+. +..-.|-..++...+.+.-+.--..--++.+.-++.+|..+..
T Consensus 46 AaLqKQKqK~e~ek~e~--------s~Lk-REnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk------- 109 (307)
T PF10481_consen 46 AALQKQKQKVEEEKNEY--------SALK-RENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK------- 109 (307)
T ss_pred HHHHHHHHHHHHHhhhh--------hhhh-hhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH-------
Confidence 56777777777655441 1112 2222222333444444443333333345555556666655555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhHh
Q psy17852 172 QLKKLQVHELEKAKRLLESQLAEQ 195 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~~~~ 195 (200)
.+..|.+.++-+..+|+-.+.+.+
T Consensus 110 qie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666666666665555443
No 115
>KOG0980|consensus
Probab=58.28 E-value=2e+02 Score=28.68 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy17852 150 ADYKDM 155 (200)
Q Consensus 150 ~el~el 155 (200)
.++..+
T Consensus 501 ~El~~l 506 (980)
T KOG0980|consen 501 QELALL 506 (980)
T ss_pred HHHHHH
Confidence 333333
No 116
>KOG2264|consensus
Probab=56.63 E-value=1.7e+02 Score=27.96 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy17852 137 QKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLA 193 (200)
Q Consensus 137 ~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~ 193 (200)
...++...+.++.+++.++....++..+.+-..+..+..|...|...|.+++|....
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 334444555678889999999999999999999999999999999999999987654
No 117
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.70 E-value=1.1e+02 Score=24.87 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=4.8
Q ss_pred HHHHHhhhHHHH
Q psy17852 124 LREVEAELDDER 135 (200)
Q Consensus 124 i~elq~~Leee~ 135 (200)
+..++.++.+..
T Consensus 95 lp~le~el~~l~ 106 (206)
T PRK10884 95 VPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 118
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.51 E-value=1.1e+02 Score=24.66 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 20 ~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+..++.++....-|..-|.|+...+..+...+...-...+.++..+.+......
T Consensus 15 ~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 15 NELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666667777777777666666665566666665555554443
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.72 E-value=2e+02 Score=27.43 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q psy17852 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAK 50 (200)
Q Consensus 6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~ 50 (200)
..++..+....+.....+..+......++..+.++...+...++.
T Consensus 215 e~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 215 EAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 333444444444444444444444444455555555444444443
No 120
>KOG0250|consensus
Probab=54.54 E-value=2.5e+02 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 154 DMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 154 ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
.+..+++...--...+.+++.+++.++..|...++
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444333333
No 121
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.50 E-value=2.3e+02 Score=27.89 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 92 KKYEADYKDMEQQLEMNNKLKEDA---LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 168 (200)
Q Consensus 92 ~el~~~kk~lE~el~e~~~~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~ 168 (200)
..+...|..|+..+..+...-+.. ++... .-|.+|+..|.....+...+..+. ..+........-....
T Consensus 599 E~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E-~~L~eLq~eL~~~keS~s~~E~ql-------~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 599 EKLESEKEELEMELASCQDQLESLKNQLKESE-QKLEELQSELESAKESNSLAETQL-------KAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhH
Confidence 344455555665554422222111 34444 455666666665555555544444 4444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 169 ALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 169 a~k~~~~l~~~i~elq~~lee~~ 191 (200)
++..+..++..|.-|..+|+.++
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555543
No 122
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.16 E-value=73 Score=21.97 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQ 47 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~ 47 (200)
+|..+|+...+.+.-+.-.+++|.-.+..|..+...+.+.-+..
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L 51 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45555555555555555555555555555555554444443333
No 123
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.33 E-value=1.1e+02 Score=23.69 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17852 143 ASRKKYEADYKDMEQQL 159 (200)
Q Consensus 143 ~~~kklE~el~ele~qL 159 (200)
...+.+.+++..|...+
T Consensus 93 ~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 93 KEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 33344444444444433
No 124
>PRK00736 hypothetical protein; Provisional
Probab=51.46 E-value=69 Score=21.21 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
++..+.+|+..+...+..+..+...+-..+.+|..|+.+|.-.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777666543
No 125
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.68 E-value=1.4e+02 Score=24.68 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=57.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLA 193 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~ 193 (200)
.-|.++..+.+.-...+...+..++....|++.|+..+-.+...+......+..+...+.-|..++++.+..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666777777888899999999999999999999999999999888888888887654
No 126
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.44 E-value=87 Score=22.77 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQ 47 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~ 47 (200)
.+...+..+...++.+...+..+...+..|..|-.-|...+...
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555443
No 127
>KOG0804|consensus
Probab=50.33 E-value=2.1e+02 Score=26.37 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHhhhHHHHHHH
Q psy17852 98 YKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQK 138 (200)
Q Consensus 98 kk~lE~el~e~~~~~ee~~r~l~~~qi~elq~~Leee~r~r 138 (200)
.++++....+++...+..+--|+ .||+||=-.+|...+.+
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLq-EQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQ-EQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHheehhhhhhhh
Confidence 33444444444444444455556 66666666665555544
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.14 E-value=1.7e+02 Score=25.20 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
++..|.....-+.+.|+.+++.+.+|..++.-=..++.-.++.++..-+...++++++.-++..++
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677778888888888888888776666666666666655556666677666666555
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.03 E-value=78 Score=21.37 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~le 55 (200)
+|...++...+-+--+.-.+++|.-.+..|..|..++....+........+-
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555555555555555544444444443
No 130
>PRK00846 hypothetical protein; Provisional
Probab=49.61 E-value=83 Score=21.57 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
.++..+.+|+..+...+..+..+...+-..+..|..|+.++.-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888888888888888777653
No 131
>KOG0979|consensus
Probab=49.52 E-value=3e+02 Score=27.99 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
..+..++..+.+.-.-........+.++..+..+..+++...++....+..+.++...|-++|..|
T Consensus 290 ~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 290 SKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555566655555555555555566666666666666666665555555555555555544443
No 132
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.92 E-value=1.6e+02 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
..|+.++.+++..+....-...........|+..+...+......
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a 122 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEA 122 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555544443
No 133
>PRK04406 hypothetical protein; Provisional
Probab=47.86 E-value=86 Score=21.25 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
..++..+.+|+..+...+..+..+...+-..+.+|..|+.+|.-.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999888887654
No 134
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.44 E-value=81 Score=20.83 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
++..+.+|+..+...+..+..+...+-..+.+|..|+.++.-
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777776654
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.29 E-value=1.5e+02 Score=23.90 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
-|..|++++.+........++.-..+..+...|..+|..+...+..|.+....++.....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777777777777777777666666644443
No 136
>KOG1029|consensus
Probab=47.12 E-value=3e+02 Score=27.36 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHHHhhHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 16 KEELQALNDKLEKSKKKLQ---SELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~---~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
++.......+|+|.++ |+ ..+.++..+......-+--+-.++..+..++..+..
T Consensus 395 ie~rEaar~ElEkqRq-lewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 395 IERREAAREELEKQRQ-LEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555432 22 223344445444444443344445555555555443
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.44 E-value=6.6 Score=37.86 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhh
Q psy17852 30 KKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62 (200)
Q Consensus 30 kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e 62 (200)
.-.++.++.++...++.....+..++...+.+.
T Consensus 88 ~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~ 120 (722)
T PF05557_consen 88 QLELEKELRELQRQLEREFKRNQELEARLKQLE 120 (722)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544444333
No 138
>PRK04325 hypothetical protein; Provisional
Probab=46.24 E-value=90 Score=21.03 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++..+.+|+..+...+..+..+...+-..+.+|..|+.++.-.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777666443
No 139
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.07 E-value=90 Score=21.00 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVV 52 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~ 52 (200)
.|..|....+.+...-..+....++|...+.++...+......+.
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443333
No 140
>KOG4643|consensus
Probab=45.78 E-value=3.5e+02 Score=27.66 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 15 EKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 15 ~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
.+++...+.-.+++.+++|..+++.|...+...-....+++..-+.+..+...+..
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888888888888777777777766666666655544
No 141
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.31 E-value=91 Score=20.79 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
..|..|+..||...+.- ...+..+..|...-+.+-+....|-....+|...+..|..++++-+
T Consensus 5 a~~~~Lr~rLd~~~rk~-------~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKN-------SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666555443 3455555555555666666666666666777777777777666543
No 142
>KOG0994|consensus
Probab=44.97 E-value=3.9e+02 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 149 EADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 149 E~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
-.+|++|+..++.-+++.......+..|..++..+..++-
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3567777777777777777777777777777776665554
No 143
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=44.56 E-value=45 Score=19.21 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=16.3
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHh
Q psy17852 33 LQSELDDITIDLETQRAKVVDLEKKQR 59 (200)
Q Consensus 33 L~~El~dl~~~le~~~~~~~~lek~~r 59 (200)
|..|+.-|.+.+-+.....+.|+.+-+
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek 28 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEK 28 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 455666666666666666666665543
No 144
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=43.94 E-value=2.1e+02 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 150 ADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 150 ~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
...+.|...+......++..-..+..++..+.++...+
T Consensus 207 keade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 207 KEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555433
No 145
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.78 E-value=1.8e+02 Score=26.85 Aligned_cols=41 Identities=20% Similarity=0.444 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
.+|.+|..++.+++...+.....+..+..++..+..|+.++
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666666666
No 146
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.22 E-value=1.7e+02 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
+.++..+.+++.+..............+..++..+..+...++.
T Consensus 134 ~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 134 KELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333334444444444444444444444443
No 147
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.51 E-value=1.2e+02 Score=22.97 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 32 KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 32 ~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE 74 (200)
.+..++.+..+-+...+..+..|+...+.-|.++..++..+++
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666654
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.49 E-value=2.1e+02 Score=24.08 Aligned_cols=61 Identities=8% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el 183 (200)
.|..++..+......-.++..+.-.|..++..|+.+++........+.+.-+.+-.++..+
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455566666677777777788888777777777666666665555544
No 149
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.47 E-value=1.8e+02 Score=23.38 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy17852 25 KLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLR 71 (200)
Q Consensus 25 ~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~ 71 (200)
-|+-.-+.++..+..+...+...-.....+++........+..|..+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 150
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=42.18 E-value=1.5e+02 Score=22.45 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Q psy17852 12 LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66 (200)
Q Consensus 12 l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~ 66 (200)
|..+++++..++..+..+++....|+.+...-++.....+-.|-..+-.++..++
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4567788888888888899999888888777776666665555444444444433
No 151
>KOG1853|consensus
Probab=41.88 E-value=2.2e+02 Score=24.26 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDA 169 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a 169 (200)
||++|.+-+.-|+...|.+.+|
T Consensus 152 LESELdEke~llesvqRLkdEa 173 (333)
T KOG1853|consen 152 LESELDEKEVLLESVQRLKDEA 173 (333)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 152
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.86 E-value=1.1e+02 Score=20.57 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
++..+.+|+..+...+..+..+...+-..+.+|..|+.++.-.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888888888888777544
No 153
>PRK02119 hypothetical protein; Provisional
Probab=40.50 E-value=1.1e+02 Score=20.51 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++..+.+|+..+...+..+..+...+-..+.+|..|+.++.-.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888888888888888888777544
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.85 E-value=2.3e+02 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
+..+...+..-......|...-..|+.|+..|..+++...-.+..+.+.++.+=..+..
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344555555566666666666666666666665555555555444
No 155
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=39.42 E-value=1.3e+02 Score=21.10 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~e 182 (200)
+--+......+-.--.++.+.+..+..++.-|..++.-.......+...=..+...+..
T Consensus 33 ~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~ 91 (96)
T PF08647_consen 33 KLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKN 91 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444445555555555555554444444444433333333333
No 156
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.35 E-value=3.3e+02 Score=25.55 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 164 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r 164 (200)
+.+. .+|..+...++.-...-.+-...+..+...+.++..+|+....
T Consensus 347 ~~l~-~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~ 393 (560)
T PF06160_consen 347 RELE-KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE 393 (560)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555 5555555555444443333333333344444444444433333
No 157
>PRK00295 hypothetical protein; Provisional
Probab=38.50 E-value=1.2e+02 Score=20.10 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
++..+.+|+..+...+..+..+...+-..+.+|..|+.++.-.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777777766544
No 158
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.40 E-value=2.1e+02 Score=23.02 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
|..|...+.++...+..+...++-|..=----...++...++-+.+..-...+..++-.|+..+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444333222333445555555555555556666666555544
No 159
>COG5570 Uncharacterized small protein [Function unknown]
Probab=38.11 E-value=96 Score=19.71 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 20 ~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
...+..|++.--.|+.++.+.+..-......+.+|-..+-.+-.++..++.
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777788887777655566667776666666666665554
No 160
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.98 E-value=1.8e+02 Score=21.99 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
..+..++..+..-...-..+.+....++.....+...+..+..........+.++...+.....++
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444443333334444444444333333
No 161
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=37.96 E-value=98 Score=27.15 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=16.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 175 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~ 175 (200)
.|.+|...+....-.-..+......+..++..|...+..-.-.+..+++.+..
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 34444444444444444444444555555555555554444444444443333
No 162
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.47 E-value=1.4e+02 Score=20.62 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q psy17852 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKV 51 (200)
Q Consensus 17 ee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~ 51 (200)
+-+..++....-.-.=|+.|+++|...-......+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445556666666666554444433
No 163
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.30 E-value=1.8e+02 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q psy17852 24 DKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 24 ~~ler~kk~L~~El~dl~~ 42 (200)
..|......+..++..|..
T Consensus 30 ~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 30 SSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 164
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.12 E-value=2.1e+02 Score=22.57 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy17852 169 ALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 169 a~k~~~~l~~~i~elq~~l 187 (200)
++..+..+..|.+.++.++
T Consensus 173 ~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4444445555555554443
No 165
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.70 E-value=4.3e+02 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhHHHHhHHHH
Q psy17852 27 EKSKKKLQSELDDITIDLETQ 47 (200)
Q Consensus 27 er~kk~L~~El~dl~~~le~~ 47 (200)
.-.+--|+..+.+....++..
T Consensus 433 qSlN~~Lq~ql~es~k~~e~l 453 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELL 453 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 333334444444333333333
No 166
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.44 E-value=2.5e+02 Score=23.23 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 142 LASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 142 ~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
...+..++..+..++.++..+.-....+...+..|..+|.++....+...
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888888888888888888888888888888888877766543
No 167
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.34 E-value=1e+02 Score=18.75 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
.+|.|..-|....+........+.+....|.+++..|...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777777777777777777777777776544
No 168
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.12 E-value=4e+02 Score=25.55 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=3.6
Q ss_pred HHHhhHHHHH
Q psy17852 19 LQALNDKLEK 28 (200)
Q Consensus 19 ~~~~~~~ler 28 (200)
...++..|++
T Consensus 48 ~~~~V~eLE~ 57 (617)
T PF15070_consen 48 DISRVQELER 57 (617)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 169
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.94 E-value=4e+02 Score=25.56 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV 51 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~ 51 (200)
.+..+...++.+...+..|.+....+..+++.|.+.++.....+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 170
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.65 E-value=1.7e+02 Score=21.05 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHhhh
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKL--QSELDDITIDLETQRAKVVDLEKKQRNF 61 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L--~~El~dl~~~le~~~~~~~~lek~~r~~ 61 (200)
..+..+...+.....++..+|..-..| ..++.+|...+.+..+.+..+....+-+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555555555555666666555555 5555566666655555555555444333
No 171
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=2.1e+02 Score=22.03 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 12 LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 12 l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~le 55 (200)
..++++.+..+++.|.+....++..+.+|..........+..+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888777777665555443
No 172
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.86 E-value=1.9e+02 Score=21.47 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy17852 94 YEADYKDMEQQL 105 (200)
Q Consensus 94 l~~~kk~lE~el 105 (200)
+....+.+|+++
T Consensus 21 L~s~lr~~E~E~ 32 (120)
T PF12325_consen 21 LQSQLRRLEGEL 32 (120)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 173
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.85 E-value=1.1e+02 Score=19.74 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
.+|.++..|+..|..++.....++..+..+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777766666665543
No 174
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.70 E-value=2.7e+02 Score=25.78 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 159 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL 159 (200)
.+|..+..+++...+.+.+.....+.++.++..|+.++
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333444444444445555555555554
No 175
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.66 E-value=47 Score=32.10 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhh
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e 62 (200)
++.+...+.+.++.+...+..++.....|+.++..+...+.........+.....+++
T Consensus 348 lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLe 405 (722)
T PF05557_consen 348 LQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLE 405 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666666655555555555444444444443
No 176
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.65 E-value=2.7e+02 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=12.2
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852 37 LDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67 (200)
Q Consensus 37 l~dl~~~le~~~~~~~~lek~~r~~e~el~e 67 (200)
...+....+........|......+...+.+
T Consensus 75 ~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 75 AQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444433333
No 177
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.64 E-value=1.6e+02 Score=20.59 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852 152 YKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197 (200)
Q Consensus 152 l~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~ 197 (200)
+..+..+++.+......++..++.|+.+.+-|-. .++..|...
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k---~eRK~RtHR 45 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK---KERKERTHR 45 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4456666666666666666666666666666554 345555443
No 178
>smart00340 HALZ homeobox associated leucin zipper.
Probab=33.32 E-value=1.1e+02 Score=18.52 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852 17 EELQALNDKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 17 ee~~~~~~~ler~kk~L~~El~dl~~ 42 (200)
+-+..-|+.|-..+++|+.|+.+|..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677888888899998888864
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.09 E-value=3.2e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=10.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 127 VEAELDDERKQKAAALASRKKYEADYKDM 155 (200)
Q Consensus 127 lq~~Leee~r~r~e~~~~~kklE~el~el 155 (200)
+..+|..-...+.++......++.+...+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 180
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.66 E-value=4.2e+02 Score=24.83 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALK----------QLKKLQVHELEKAKR 186 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k----------~~~~l~~~i~elq~~ 186 (200)
..+. ..|+.|=..++.+..++.........+...+..+..+..........+.. ..+.+..+++.+...
T Consensus 281 ~~i~-~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 281 EEIE-ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3556 67888888888888888877777766666555555555444443333222 345666666666666
Q ss_pred hHHHHHh
Q psy17852 187 LLESQLA 193 (200)
Q Consensus 187 lee~~~~ 193 (200)
++.....
T Consensus 360 ~~~~~~~ 366 (560)
T PF06160_consen 360 YEDLEER 366 (560)
T ss_pred HHHHHHH
Confidence 6655543
No 181
>KOG4196|consensus
Probab=32.04 E-value=1.9e+02 Score=21.93 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q psy17852 23 NDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK 57 (200)
Q Consensus 23 ~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~ 57 (200)
.+.||+.+..|..+++-|...+.........+..+
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777776666555555554433
No 182
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=31.91 E-value=3.7e+02 Score=23.90 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17852 92 KKYEADYKDMEQQLEM 107 (200)
Q Consensus 92 ~el~~~kk~lE~el~e 107 (200)
..+...+..|+.++.+
T Consensus 147 ~~lr~ar~~Le~Dl~d 162 (384)
T PF03148_consen 147 RLLRAARYRLEKDLSD 162 (384)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888887
No 183
>KOG2264|consensus
Probab=31.77 E-value=2e+02 Score=27.56 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHH
Q psy17852 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQR 48 (200)
Q Consensus 10 ~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~ 48 (200)
.++.+-++.+...+.+++-.++.|+++++++...+++..
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444445555566666666666665555554443
No 184
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=31.65 E-value=2.3e+02 Score=21.43 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHH
Q psy17852 24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64 (200)
Q Consensus 24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~e 64 (200)
-.|++.++.|+..+.++.-.|+..+.+.|-.....+..-.+
T Consensus 61 kqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaE 101 (129)
T PF15372_consen 61 KQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAE 101 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444455555554444444444444444333333333
No 185
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=31.41 E-value=1.5e+02 Score=19.39 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALASRKKYE 149 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE 149 (200)
.++ ..|.+|+.+|.-+.+.+..+..-.+-+.
T Consensus 6 ~~~-~~l~~L~~~l~~E~~~r~Gaenm~~~~~ 36 (72)
T cd00089 6 KLQ-SRLERLEKELSIELKVKEGAENLLRLYS 36 (72)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345 6799999999999999999888776554
No 186
>KOG0804|consensus
Probab=31.07 E-value=4.3e+02 Score=24.40 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=47.3
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLA 193 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~ 193 (200)
+.+++ ..++.++.++.+++-.-.-+.+..--+-+.+.+++.++..+. ...+.++-.|+.|+.||.-.+|-.+..
T Consensus 384 ~~q~q-~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~---~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 384 LQQLQ-TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL---GSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 44555 667777777766665445555555556666777776665444 444556777888888888777765543
No 187
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.65 E-value=5.4e+02 Score=25.43 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=82.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADY 98 (200)
Q Consensus 19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~~el~~~k 98 (200)
+...+.-++++ +.|+--|..+|+.+-.....++...-.+|..+.+-=.++--.--+.+.+-+..-+....++++.+
T Consensus 12 aeeav~gweka----e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~ 87 (769)
T PF05911_consen 12 AEEAVSGWEKA----EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK 87 (769)
T ss_pred HHHHHhhHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444555544 45677777777777666666666666666555442111110000112222222233337788888
Q ss_pred HHHHHHHHHhhHHH----HH--HH-h-----------------hHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHH
Q psy17852 99 KDMEQQLEMNNKLK----ED--AL-K-----------------QLKKLQLREVEAELDDERKQKAAALASR----KKYEA 150 (200)
Q Consensus 99 k~lE~el~e~~~~~----ee--~~-r-----------------~l~~~qi~elq~~Leee~r~r~e~~~~~----kklE~ 150 (200)
..||..+.+..+.- .+ .+ + ... ..+..|...|+...+....+.-.. +-|+.
T Consensus 88 ~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e-~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 88 SELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAE-AEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887721111 00 00 0 222 446777777777766655443333 33443
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 151 DYKDME---QQLEMNNKLKEDALKQLKKLQVHELEKAK 185 (200)
Q Consensus 151 el~ele---~qLe~a~r~~~~a~k~~~~l~~~i~elq~ 185 (200)
...+.. ...+.+.++--+-.+.+.+|.+...-|+.
T Consensus 167 r~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~ 204 (769)
T PF05911_consen 167 RNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRA 204 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 22344455556666666777766666554
No 188
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=30.31 E-value=3e+02 Score=22.30 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
.....|+..|+-.+.....+...-+....+ .....-.+..++.+++.++.+|..|+.+.++
T Consensus 126 ~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~e-------a~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 126 ARANRLQADLQIARQQQQQVAARQQQARQE-------AQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666666666666555544443433333 3334444555666666666677766666543
No 189
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.10 E-value=4.7e+02 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=10.8
Q ss_pred HHHHHHHHHhHHHHhHHHHHHH
Q psy17852 29 SKKKLQSELDDITIDLETQRAK 50 (200)
Q Consensus 29 ~kk~L~~El~dl~~~le~~~~~ 50 (200)
.+.--...+.+|..++.-+...
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSK 435 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSK 435 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444433
No 190
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=30.04 E-value=2e+02 Score=20.22 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQ 58 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~ 58 (200)
.+|..+..+..............-..++..+.-+...+..+.....+..+..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~ 54 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSK 54 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444433333333333333333333333333333333333
No 191
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.91 E-value=3.8e+02 Score=23.39 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 148 YEADYKDMEQQLEMNN-KLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 148 lE~el~ele~qLe~a~-r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
|-.+--+++..|+... -..+.+.+.+.++.....-||..|+
T Consensus 161 Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 161 LRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444555555553 2355666666666666666666665
No 192
>KOG2391|consensus
Probab=29.03 E-value=4.1e+02 Score=23.56 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~ 181 (200)
..+ ..+..+++..+.-.|..+++....++|+.....|+.++-..+.+.+-+....+......+
T Consensus 222 r~e-eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 222 RRE-EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHH-HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 444 667888888888888888888888888888888888888777777777666666444443
No 193
>KOG0963|consensus
Probab=28.71 E-value=5.3e+02 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 33 LQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 33 L~~El~dl~~~le~~~~~~~~le 55 (200)
...|..++...+++.+..+..+.
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLK 141 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhh
Confidence 44455566666666555554443
No 194
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.70 E-value=5.3e+02 Score=24.76 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=4.9
Q ss_pred HHHHhhHHHHHh
Q psy17852 182 EKAKRLLESQLA 193 (200)
Q Consensus 182 elq~~lee~~~~ 193 (200)
++..-++|-++.
T Consensus 637 ~i~riieEYR~~ 648 (652)
T COG2433 637 DILRIIEEYRRE 648 (652)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.62 E-value=3.9e+02 Score=23.10 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
..|.++...+..-++.-.++...+..+...+.++..+.......+.++++
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444443
No 196
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.13 E-value=4.8e+02 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 157 QQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 157 ~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++.........+...++.+..++..++.+|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444555555555555554443
No 197
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.73 E-value=2.5e+02 Score=20.57 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
+...+..+...++.+...+..+...+..|..|-+-|...++.
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555555544
No 198
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.37 E-value=2e+02 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELD 38 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~ 38 (200)
.|..+|..+-+.+..+.-.+..|...+..|..+..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444444444444433333
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.35 E-value=3.9e+02 Score=22.75 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE 74 (200)
+..-...+..+......++.+|+.|..++++.......+.+..-....++..++.++.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777888888888888777777777777777777777766666653
No 200
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=27.22 E-value=3e+02 Score=22.18 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~le 55 (200)
++=..+..++.+-++.....+..++|...+|-....++...+.+.+.....+.
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls 62 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWS 62 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999999999999999999998887664
No 201
>KOG1655|consensus
Probab=27.08 E-value=3.5e+02 Score=22.10 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=62.2
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH-hhHHHHHHH
Q psy17852 40 ITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAA-ALASR-KKYEADYKDMEQQLEM-NNKLKEDAL 116 (200)
Q Consensus 40 l~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~-el~~~-~el~~~kk~lE~el~e-~~~~~ee~~ 116 (200)
|+..++........++.++.+|+.++..++.++-- .|-.-.. .+..+ -...+.||-+|++... .++.-..-.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k-----~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKK-----TRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 44555666666677788888888888888776542 0000000 01111 2345667778877755 111100001
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEA-DYKDMEQQLEMNNKLKEDALKQ 172 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~-el~ele~qLe~a~r~~~~a~k~ 172 (200)
-++...-+++-+.++..-.-.-.++...+|++-. .|.+|+.++.+.=-+.++++..
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~ 148 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEV 148 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222122455555555444444555555554432 3445555555444444444443
No 202
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.97 E-value=2.9e+02 Score=21.12 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~ 165 (200)
+..|...|+.-+.-+..+.....++.+.+.+|+.......+.
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333334444444444444444444444444444444333333
No 203
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.69 E-value=2.1e+02 Score=19.38 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 156 EQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 156 e~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
+..++..|-+..+....+.+++.++.-|-..+.
T Consensus 21 E~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 21 EQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 204
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=26.64 E-value=1.9e+02 Score=19.85 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy17852 145 RKKYEADYKDMEQQLEMNNKL--KEDALKQLKKLQVHELEKAK 185 (200)
Q Consensus 145 ~kklE~el~ele~qLe~a~r~--~~~a~k~~~~l~~~i~elq~ 185 (200)
...|..||.+|..-++.+.|. ++-+...+++++..|..+..
T Consensus 5 i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 5 IEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777554 56677777777777776653
No 205
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=26.29 E-value=2.5e+02 Score=20.13 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRA 49 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~ 49 (200)
-+++.....+.+.+..+....-.+.+.+..+-.++.++.........
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45677778888888888888888888888888888888777666544
No 206
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.95 E-value=2.9e+02 Score=20.85 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
.+.+.+.-+..-...-..+......-.+++..|...|+.+.+.+..+++
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444444455556666666666666666655544
No 207
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.94 E-value=3e+02 Score=24.36 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHH
Q psy17852 11 VLEREKE 17 (200)
Q Consensus 11 ~l~~~le 17 (200)
++...++
T Consensus 109 elkkEie 115 (370)
T PF02994_consen 109 ELKKEIE 115 (370)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 208
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.39 E-value=2.3e+02 Score=20.24 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
.|...++=..+..+-.+.++..++..++.|..|+.-+.+...+
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~ 47 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGD 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3566677777778888888999999999999999988876643
No 209
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.19 E-value=3.4e+02 Score=24.05 Aligned_cols=7 Identities=43% Similarity=0.449 Sum_probs=0.4
Q ss_pred HHHHHHH
Q psy17852 7 KENEVLE 13 (200)
Q Consensus 7 ~~l~~l~ 13 (200)
.++..+.
T Consensus 112 kEie~IK 118 (370)
T PF02994_consen 112 KEIENIK 118 (370)
T ss_dssp ------H
T ss_pred HHHHHHh
Confidence 3344433
No 210
>KOG0239|consensus
Probab=24.06 E-value=5.5e+02 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 29 SKKKLQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 29 ~kk~L~~El~dl~~~le~~~~~~~~le 55 (200)
....|+.++..+...+..+...+..+.
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~ 268 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLT 268 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444433
No 211
>KOG4673|consensus
Probab=23.84 E-value=7.1e+02 Score=24.54 Aligned_cols=68 Identities=28% Similarity=0.224 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hHH---------HHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSEL-----DDI---------TIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El-----~dl---------~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
++..+|..|...++....++-..++.+--|..+. +++ .+.-++.-..++.++++...+.++...++
T Consensus 350 K~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr 429 (961)
T KOG4673|consen 350 KTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALR 429 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556677777777777777767777766555422 111 12233445556777777666666655555
Q ss_pred HH
Q psy17852 70 LR 71 (200)
Q Consensus 70 ~~ 71 (200)
..
T Consensus 430 ~e 431 (961)
T KOG4673|consen 430 RE 431 (961)
T ss_pred HH
Confidence 43
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.31 E-value=4.2e+02 Score=21.77 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 22 LNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 22 ~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
.++.+...+..|..++..+..+++....-+..+++-....+.++..+..++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433
No 213
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.31 E-value=5.3e+02 Score=22.88 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE 74 (200)
+..-+......=--++.++..+-..-+..+.++.++...+..+...+..+...-..+..++...+..+++
T Consensus 250 i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 250 ISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 214
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.27 E-value=2.3e+02 Score=18.72 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLE 45 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le 45 (200)
+..|...++.+-..|..|...+..|..++..+...-.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~ 38 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERA 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777666665555433
No 215
>KOG0999|consensus
Probab=23.04 E-value=6.7e+02 Score=23.99 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-HHHHHHHHHHHHH---HHHH-HHHHHHH
Q psy17852 24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-AELDDERKQKAAA---LASR-KKYEADY 98 (200)
Q Consensus 24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-e~~e~~rk~l~~e---l~~~-~el~~~k 98 (200)
..++-.+.+|..++.++...-...-....+|+...=.+++.+..++...-| +.+..+.+.+..+ |.++ .++.+.|
T Consensus 145 ~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk 224 (772)
T KOG0999|consen 145 AAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLK 224 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777666666566666666666666667777766654433 3444455555554 3444 4555555
Q ss_pred HHHHHHHHH
Q psy17852 99 KDMEQQLEM 107 (200)
Q Consensus 99 k~lE~el~e 107 (200)
.=-+.++.+
T Consensus 225 ~IAekQlEE 233 (772)
T KOG0999|consen 225 EIAEKQLEE 233 (772)
T ss_pred HHHHHHHHH
Confidence 555555555
No 216
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.86 E-value=4.1e+02 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 141 ALASRKKYEADYKDMEQQLEMNNKLKEDALKQL 173 (200)
Q Consensus 141 ~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~ 173 (200)
+......|+.+-...+.+|....+++..+++..
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445566666666666666666666555543
No 217
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.83 E-value=2.1e+02 Score=18.17 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKR 186 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~ 186 (200)
+-...+.+|+..+.........+...+..|...+..|..+
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555555555555555555555555555555443
No 218
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.04 E-value=3.1e+02 Score=19.68 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHh
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITID 43 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~ 43 (200)
...+..++......+..+...+..|..++..|...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 44555666666666666666666666666666653
No 219
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.90 E-value=3.2e+02 Score=19.80 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~ 66 (200)
+|.+...-|+..+-+.......|...-+.-+..|-.+...++..+=....|++..-.|..++.
T Consensus 9 KLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777766666655555555555666666555555555555555544443
No 220
>KOG4005|consensus
Probab=21.39 E-value=5e+02 Score=21.90 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
|.+|.+..+-+...++.|...+..|=.+-.++.+.++.
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333334443333333333333333333
No 221
>KOG0018|consensus
Probab=21.31 E-value=9.2e+02 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 154 DMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 154 ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
.++..+...+.....+.+.+-+|...|-.+...++
T Consensus 853 ~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie 887 (1141)
T KOG0018|consen 853 KKEDEINEVKKILRRLVKELTKLDKEITSIESKIE 887 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 34444444444455555555555555554444444
No 222
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.18 E-value=5.9e+02 Score=22.61 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe 160 (200)
+..+. ..|..|+..|.........+......++.++..-...|.
T Consensus 326 v~~l~-~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 326 VKELR-ESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666 778888888888888888888888788777766555553
No 223
>KOG0999|consensus
Probab=21.12 E-value=7.4e+02 Score=23.74 Aligned_cols=96 Identities=26% Similarity=0.335 Sum_probs=45.9
Q ss_pred HHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhh----H-HHHHHHHHHHHHH
Q psy17852 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVV-------DLEKKQRNFDKVLAEEKLREV----E-AELDDERKQKAAA 87 (200)
Q Consensus 20 ~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~-------~lek~~r~~e~el~e~k~~~e----E-e~~e~~rk~l~~e 87 (200)
..++-.|+..-+++..++.......+....... .++...+++-.++.+++-+-. + .+++.++-.++..
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 334445555555555555555555444333332 333344455555555442211 1 4677777777777
Q ss_pred HH----HH---HHHHHHHHHHHHHHHHhhHHHHHH
Q psy17852 88 LA----SR---KKYEADYKDMEQQLEMNNKLKEDA 115 (200)
Q Consensus 88 l~----~~---~el~~~kk~lE~el~e~~~~~ee~ 115 (200)
+. ++ ..+--..+.|+.++.--+.+.+++
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22 233334455665554433344444
No 224
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.01 E-value=1.5e+02 Score=15.54 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhHHH
Q psy17852 173 LKKLQVHELEKAKRLLES 190 (200)
Q Consensus 173 ~~~l~~~i~elq~~lee~ 190 (200)
+..+...|.||..+|.+-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777776653
No 225
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.88 E-value=2.8e+02 Score=18.84 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHhHHHHhHHHHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKL-----EKSKKKLQSELDDITIDLETQRAKVV 52 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~l-----er~kk~L~~El~dl~~~le~~~~~~~ 52 (200)
+.|+.++..++-.+.++......+ .+.++.|..++..|...++.-+..+.
T Consensus 20 ~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 20 KALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443322221 23455556666655555555444443
No 226
>KOG4643|consensus
Probab=20.65 E-value=9.4e+02 Score=24.78 Aligned_cols=52 Identities=27% Similarity=0.281 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDL 54 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~l 54 (200)
|+|+.++..|.+.+.....+..+++..-+.|..|.+.|.....-...+....
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4678888888888888888888888877788887777776666555544443
No 227
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.38 E-value=5e+02 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 139 AAALASRKKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 139 ~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
..+........+.|.+++..|..|.....++..
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ 213 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAED 213 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554444444443
No 228
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.25 E-value=5.9e+02 Score=22.31 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 145 RKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 145 ~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
++-|++++..|..-|..++|....--+..-+|+.+++-|..-|
T Consensus 117 RR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 117 RRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457888888888888888877766667778888887776544
Done!