Query psy17852
Match_columns 200
No_of_seqs 114 out of 749
Neff 7.6
Searched_HMMs 29240
Date Sat Aug 17 00:42:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fxo_A Myosin heavy chain, car 97.3 0.026 8.8E-07 41.5 16.9 42 31-72 16-57 (129)
2 1i84_S Smooth muscle myosin he 97.3 0.001 3.6E-08 65.5 10.4 69 122-190 1039-1107(1184)
3 1i84_S Smooth muscle myosin he 97.3 0.0013 4.3E-08 64.8 10.9 74 118-192 1008-1081(1184)
4 2fxo_A Myosin heavy chain, car 97.2 0.033 1.1E-06 41.0 18.3 66 131-196 64-129 (129)
5 2eqb_B RAB guanine nucleotide 97.1 0.017 5.8E-07 40.4 12.0 69 122-190 26-95 (97)
6 1c1g_A Tropomyosin; contractIl 96.7 0.15 5.2E-06 40.1 29.9 22 166-187 218-239 (284)
7 3o0z_A RHO-associated protein 96.0 0.35 1.2E-05 37.1 19.5 60 122-181 69-128 (168)
8 3o0z_A RHO-associated protein 96.0 0.35 1.2E-05 37.0 14.1 55 143-197 62-116 (168)
9 1wt6_A Myotonin-protein kinase 96.0 0.14 4.8E-06 34.4 10.2 61 124-184 12-72 (81)
10 3bas_A Myosin heavy chain, str 95.9 0.15 5.2E-06 34.9 10.7 73 116-189 16-88 (89)
11 2eqb_B RAB guanine nucleotide 95.6 0.35 1.2E-05 33.7 12.9 55 16-70 7-61 (97)
12 2dfs_A Myosin-5A; myosin-V, in 95.6 0.85 2.9E-05 44.6 18.3 50 24-73 917-970 (1080)
13 3bas_A Myosin heavy chain, str 95.4 0.24 8.3E-06 33.9 10.0 71 3-73 17-87 (89)
14 2ocy_A RAB guanine nucleotide 95.2 0.71 2.4E-05 34.9 18.1 69 122-190 58-127 (154)
15 2e7s_A RAB guanine nucleotide 94.9 0.087 3E-06 39.0 6.9 71 122-192 46-117 (135)
16 3vkg_A Dynein heavy chain, cyt 94.5 6.7 0.00023 42.6 25.5 72 116-188 2030-2101(3245)
17 2efr_A General control protein 93.5 1.8 6.2E-05 32.7 22.8 73 118-191 74-146 (155)
18 2dfs_A Myosin-5A; myosin-V, in 92.7 7.9 0.00027 37.8 18.3 51 144-194 1024-1079(1080)
19 3na7_A HP0958; flagellar bioge 90.7 5.7 0.00019 32.0 22.5 58 15-72 19-76 (256)
20 2e7s_A RAB guanine nucleotide 90.3 0.85 2.9E-05 33.7 6.5 72 32-107 43-114 (135)
21 2ocy_A RAB guanine nucleotide 90.0 4.9 0.00017 30.2 17.1 25 83-107 66-90 (154)
22 1ic2_A Tropomyosin alpha chain 88.5 4 0.00014 27.1 11.0 73 122-194 6-78 (81)
23 3tnu_B Keratin, type II cytosk 88.3 5.7 0.00019 28.7 12.7 86 18-106 33-120 (129)
24 3tnu_A Keratin, type I cytoske 88.0 6 0.00021 28.6 12.0 85 19-106 36-122 (131)
25 3na7_A HP0958; flagellar bioge 87.1 10 0.00036 30.4 20.4 58 16-73 13-70 (256)
26 2v71_A Nuclear distribution pr 86.8 9.4 0.00032 29.6 23.4 67 4-73 14-80 (189)
27 2ke4_A CDC42-interacting prote 86.5 3.5 0.00012 28.6 7.4 67 116-183 17-88 (98)
28 1d7m_A Cortexillin I; coiled-c 83.4 8.5 0.00029 26.2 11.3 66 122-194 4-69 (101)
29 3u1c_A Tropomyosin alpha-1 cha 82.4 10 0.00034 26.3 12.3 43 143-185 51-93 (101)
30 3ol1_A Vimentin; structural ge 82.3 11 0.00039 26.8 11.1 63 6-75 19-81 (119)
31 3oja_B Anopheles plasmodium-re 81.1 29 0.00099 30.7 13.8 55 139-193 533-587 (597)
32 2efr_A General control protein 80.5 16 0.00055 27.4 14.9 44 147-190 74-117 (155)
33 3u59_A Tropomyosin beta chain; 80.5 12 0.0004 25.8 12.3 45 141-185 49-93 (101)
34 2w83_C C-JUN-amino-terminal ki 80.1 10 0.00035 25.0 8.7 65 5-69 7-71 (77)
35 3u1c_A Tropomyosin alpha-1 cha 77.9 15 0.0005 25.4 10.6 59 5-70 7-65 (101)
36 3efg_A Protein SLYX homolog; x 77.4 11 0.00037 24.9 6.8 43 147-189 18-60 (78)
37 3u59_A Tropomyosin beta chain; 75.1 17 0.00059 24.9 10.6 57 6-69 8-64 (101)
38 3swk_A Vimentin; cytoskeleton, 73.5 18 0.00061 24.3 9.5 55 20-74 6-60 (86)
39 3s4r_A Vimentin; alpha-helix, 72.8 19 0.00066 24.4 13.1 68 116-186 25-92 (93)
40 3s4r_A Vimentin; alpha-helix, 71.4 21 0.00072 24.2 9.9 62 8-78 10-71 (93)
41 3hnw_A Uncharacterized protein 70.0 29 0.001 25.3 11.7 43 147-189 93-135 (138)
42 2b9c_A Striated-muscle alpha t 69.4 31 0.0011 25.4 14.0 73 116-189 54-126 (147)
43 3i00_A HIP-I, huntingtin-inter 68.8 29 0.00099 24.8 9.3 46 138-183 35-80 (120)
44 3hnw_A Uncharacterized protein 68.1 32 0.0011 25.1 10.9 12 94-105 122-133 (138)
45 3i00_A HIP-I, huntingtin-inter 64.0 33 0.0011 24.5 7.3 46 148-196 20-65 (120)
46 3mq9_A Bone marrow stromal ant 63.8 67 0.0023 27.5 10.8 65 125-192 400-464 (471)
47 3swk_A Vimentin; cytoskeleton, 63.8 30 0.001 23.1 9.5 56 9-64 23-78 (86)
48 3ol1_A Vimentin; structural ge 63.6 36 0.0012 24.0 15.2 68 117-192 44-111 (119)
49 1x8y_A Lamin A/C; structural p 61.3 33 0.0011 22.8 8.2 15 92-106 59-73 (86)
50 3mq7_A Bone marrow stromal ant 59.8 44 0.0015 23.8 14.6 57 122-181 53-109 (121)
51 3vkg_A Dynein heavy chain, cyt 59.2 2.1E+02 0.0073 31.5 24.3 57 122-178 2014-2070(3245)
52 3m91_A Proteasome-associated A 59.2 27 0.00092 21.1 6.9 41 149-189 8-48 (51)
53 3q8t_A Beclin-1; autophagy, AT 56.6 44 0.0015 22.7 10.6 44 4-47 8-51 (96)
54 3tnu_A Keratin, type I cytoske 54.0 57 0.002 23.3 10.5 38 7-44 38-75 (131)
55 2jee_A YIIU; FTSZ, septum, coi 50.3 53 0.0018 21.8 10.4 39 4-42 10-48 (81)
56 2b9c_A Striated-muscle alpha t 49.4 75 0.0026 23.3 11.2 84 100-184 56-142 (147)
57 2v4h_A NF-kappa-B essential mo 49.0 66 0.0023 22.6 9.4 38 150-187 69-106 (110)
58 2jee_A YIIU; FTSZ, septum, coi 48.3 57 0.002 21.6 9.2 39 15-53 7-45 (81)
59 3a7p_A Autophagy protein 16; c 48.3 82 0.0028 23.4 8.7 32 22-53 69-100 (152)
60 3ni0_A Bone marrow stromal ant 48.2 63 0.0022 22.1 10.8 39 124-162 48-86 (99)
61 3tnu_B Keratin, type II cytosk 47.7 72 0.0025 22.6 9.8 38 35-72 36-73 (129)
62 1ic2_A Tropomyosin alpha chain 47.0 57 0.002 21.2 10.8 27 5-31 4-30 (81)
63 4etp_A Kinesin-like protein KA 46.6 46 0.0016 28.6 6.7 52 19-70 8-59 (403)
64 3iv1_A Tumor susceptibility ge 44.9 64 0.0022 21.2 11.1 66 111-184 7-73 (78)
65 1gk7_A Vimentin; intermediate 41.8 47 0.0016 18.8 4.9 31 8-38 7-37 (39)
66 1wt6_A Myotonin-protein kinase 41.8 74 0.0025 21.1 8.6 51 23-73 19-69 (81)
67 2xdj_A Uncharacterized protein 40.4 79 0.0027 20.9 10.2 56 124-179 8-63 (83)
68 2w6b_A RHO guanine nucleotide 39.5 64 0.0022 19.7 5.9 28 149-176 23-50 (56)
69 3efg_A Protein SLYX homolog; x 39.3 78 0.0027 20.6 7.7 43 147-189 11-53 (78)
70 3kpe_A Fusion glycoprotein F0; 39.0 63 0.0022 19.5 7.1 42 148-189 2-43 (51)
71 3mq7_A Bone marrow stromal ant 38.5 1E+02 0.0036 21.8 10.5 56 129-187 32-87 (121)
72 3m91_A Proteasome-associated A 36.6 69 0.0024 19.2 6.5 41 7-47 9-49 (51)
73 3nmd_A CGMP dependent protein 36.3 87 0.003 20.3 6.9 26 165-190 41-66 (72)
74 1x8y_A Lamin A/C; structural p 36.3 92 0.0031 20.5 10.3 48 26-73 33-80 (86)
75 2k48_A Nucleoprotein; viral pr 36.1 1.1E+02 0.0037 21.3 8.9 21 172-192 83-103 (107)
76 3ghg_A Fibrinogen alpha chain; 35.2 2.5E+02 0.0085 25.2 11.1 71 117-188 60-155 (562)
77 3oja_A Leucine-rich immune mol 34.0 1.9E+02 0.0065 24.7 8.8 49 25-73 418-466 (487)
78 1gk4_A Vimentin; intermediate 34.0 99 0.0034 20.2 10.4 44 30-73 35-78 (84)
79 2l5g_A GPS2 protein, G protein 33.5 66 0.0023 18.0 3.7 29 15-43 9-37 (38)
80 3l4f_A RHO guanine nucleotide 33.3 90 0.0031 19.5 6.7 37 146-182 17-53 (61)
81 2lw1_A ABC transporter ATP-bin 32.9 1.1E+02 0.0036 20.2 7.5 56 13-68 21-79 (89)
82 4etp_A Kinesin-like protein KA 32.4 94 0.0032 26.6 6.4 46 123-168 4-49 (403)
83 1jnm_A Proto-oncogene C-JUN; B 32.4 88 0.003 19.2 6.8 45 141-185 13-57 (62)
84 4fi5_A Nucleoprotein; structur 31.5 1.4E+02 0.0046 21.0 8.0 21 172-192 70-90 (113)
85 4h22_A Leucine-rich repeat fli 30.9 1.3E+02 0.0045 20.8 6.8 33 23-55 18-50 (103)
86 3u06_A Protein claret segregat 30.3 1.5E+02 0.005 25.5 7.2 56 8-70 4-59 (412)
87 1t2k_D Cyclic-AMP-dependent tr 29.5 99 0.0034 18.8 9.0 37 150-186 22-58 (61)
88 3oja_B Anopheles plasmodium-re 28.8 2.9E+02 0.01 24.1 14.4 9 34-42 455-463 (597)
89 1gk6_A Vimentin; intermediate 28.7 1E+02 0.0035 18.8 6.6 42 32-73 11-52 (59)
90 2ic6_A Nucleocapsid protein; h 27.4 1.3E+02 0.0046 19.7 8.2 21 172-192 53-73 (78)
91 3qh9_A Liprin-beta-2; coiled-c 27.3 1.4E+02 0.0047 19.8 8.1 42 148-189 24-65 (81)
92 1lwu_C Fibrinogen gamma chain; 27.1 2.4E+02 0.008 23.5 7.7 41 148-188 10-50 (323)
93 3cvf_A Homer-3, homer protein 26.6 1.4E+02 0.0048 19.6 8.7 31 146-176 23-53 (79)
94 2xdj_A Uncharacterized protein 26.5 1.4E+02 0.0048 19.7 9.6 34 26-59 25-58 (83)
95 3cl3_D NF-kappa-B essential mo 25.7 1.9E+02 0.0064 20.8 5.9 9 179-187 117-125 (130)
96 2z5i_A TM, general control pro 25.5 1.1E+02 0.0039 18.2 6.2 32 139-170 8-39 (52)
97 1go4_E MAD1 (mitotic arrest de 25.2 1.7E+02 0.0058 20.1 9.2 33 14-46 12-44 (100)
98 3cve_A Homer protein homolog 1 25.1 1.4E+02 0.0049 19.2 8.3 31 146-176 17-47 (72)
99 2wt7_A Proto-oncogene protein 25.0 1.3E+02 0.0043 18.5 9.0 47 141-187 14-60 (63)
100 2ic9_A Nucleocapsid protein; h 24.8 1.7E+02 0.0058 20.0 8.2 21 172-192 53-73 (96)
101 2v4h_A NF-kappa-B essential mo 24.5 1.8E+02 0.0063 20.3 11.5 11 124-134 26-36 (110)
102 3u06_A Protein claret segregat 24.3 3.3E+02 0.011 23.2 8.7 49 124-172 5-53 (412)
103 2ke4_A CDC42-interacting prote 23.7 1.8E+02 0.006 19.8 7.8 50 144-193 16-91 (98)
104 1cxz_B Protein (PKN); protein- 23.0 1.7E+02 0.0059 19.5 7.2 30 162-191 54-83 (86)
105 1x79_B RAB GTPase binding effe 22.2 2.1E+02 0.0071 20.1 12.2 64 118-182 10-77 (112)
106 1ci6_A Transcription factor AT 22.0 1.5E+02 0.005 18.3 8.4 42 146-187 19-60 (63)
107 2b5u_A Colicin E3; high resolu 21.1 4.4E+02 0.015 23.5 10.6 28 149-176 348-375 (551)
108 2w6a_A ARF GTPase-activating p 21.1 1.6E+02 0.0054 18.3 7.7 46 8-53 14-59 (63)
109 1zxa_A CGMP-dependent protein 20.4 1.7E+02 0.006 18.5 4.7 33 147-179 22-54 (67)
No 1
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.33 E-value=0.026 Score=41.55 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 31 KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 31 k~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
+.+..++..+...+.........++.....+..+.+.+...+
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777666666666555433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.30 E-value=0.001 Score=65.47 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++.+++..++.......++......++.++..++.++.........+...+..++..+..++..+++.
T Consensus 1039 ~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l 1107 (1184)
T 1i84_S 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107 (1184)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666666666666666666666666666666666666666666554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.29 E-value=0.0013 Score=64.85 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~ 192 (200)
.+. ..+..++..+.........+...+.+++..+.+++..++.....+..+......+..++.+++.++++...
T Consensus 1008 ~le-~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~ 1081 (1184)
T 1i84_S 1008 LLE-ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081 (1184)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 55666666676666666666667777788888888888888877777777777777777777777665543
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.24 E-value=0.033 Score=40.99 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852 131 LDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK 196 (200)
Q Consensus 131 Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~ 196 (200)
+.+..-.+..+...+..|++.+.++...++........+....++++..+.+|..++++...+++|
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~K 129 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333333444445555678888888888888888888888888899999999999999888887765
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.10 E-value=0.017 Score=40.40 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=63.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
..+..|...|.++...|..+...+++++.+|.+|...| ++||.+.+.+.+..-.++.+...|+.+|.|-
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66888999999999999999999999999999999886 7889999999999999999999999998774
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.71 E-value=0.15 Score=40.05 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy17852 166 KEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 166 ~~~a~k~~~~l~~~i~elq~~l 187 (200)
...+...+..+...+..+...+
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.05 E-value=0.35 Score=37.08 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~ 181 (200)
..+-.||+.|+.+++.+.-.....+.+++.+..|+..++...-.-..+.-..+.|+..|.
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555554444444444444444433333
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.03 E-value=0.35 Score=37.04 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852 143 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197 (200)
Q Consensus 143 ~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~ 197 (200)
..+-.++.++..|+.+|+...+.+......+..++++|..|+..++......+|.
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344589999999999999999999999999999999999999999887766654
No 9
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=95.98 E-value=0.14 Score=34.38 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA 184 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq 184 (200)
+-+||+.|+.+.+++..+.....+..+.+-.++..|-++...+..+...+..+..++.+|+
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998888888888888888888887765
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.92 E-value=0.15 Score=34.94 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=65.9
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
++... ..+..+...+......+.++.....++..+.++|..++.++.-.+..+......|..+++++...+++
T Consensus 16 m~~~e-eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 16 MKEQL-KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666 77888999999999999999999999999999999999999999999999999999999999888764
No 11
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.61 E-value=0.35 Score=33.72 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=33.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
++.+...+..++........++..|...+.+........+..+..++.++.++-.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666666666666666666666666666665555
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.60 E-value=0.85 Score=44.59 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh----hhhHHHHHHHHHhh
Q psy17852 24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR----NFDKVLAEEKLREV 73 (200)
Q Consensus 24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r----~~e~el~e~k~~~e 73 (200)
..+.+.+..|+..+.+|...+++.......|..... .+..++..++..++
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~ 970 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555677777777777777776666665554432 34445555554444
No 13
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.37 E-value=0.24 Score=33.90 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+.+..++..+.+.+.........++.....|..+..+|..++.++...+..|...+..++..+.++..+++
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777788888888888888888888899999999988888888888888888888888887776654
No 14
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.22 E-value=0.71 Score=34.89 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=43.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
..+..|...|.++...|..+...++++++++.+|...| ++||.+.+.+.+..-.++.++..|..++.+.
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777665 5666666666555555554444444444443
No 15
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.88 E-value=0.087 Score=38.98 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=61.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~ 192 (200)
..+..|...|.++...|..+...+++++.++.+|...| ++||.+.+.+.+..-.++.++..|..++.+...
T Consensus 46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999999999999999999886 788999998888888888888888888776543
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.48 E-value=6.7 Score=42.61 Aligned_cols=72 Identities=4% Similarity=0.131 Sum_probs=57.4
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
+...+ ..|.+++..|..-...-+.+...+..++.++..++..|+-|.+...-+..+...+...+..+..++.
T Consensus 2030 L~~~~-~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2030 QDEIV-ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 44555 6677777777777777777777888888888888999998988888888888888888888877654
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.55 E-value=1.8 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
.+. .+|+.|...|.+.......+.+...+|+.++..++..|.........+...+...-..+..++..+..-.
T Consensus 74 ~yE-eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 74 KYE-EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 556 8899999999999999999999999999999999999999999988888888888888888777665543
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.75 E-value=7.9 Score=37.83 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHhH
Q psy17852 144 SRKKYEADYKDMEQQLEMNNKLKEDALK-----QLKKLQVHELEKAKRLLESQLAE 194 (200)
Q Consensus 144 ~~kklE~el~ele~qLe~a~r~~~~a~k-----~~~~l~~~i~elq~~lee~~~~~ 194 (200)
....|+.+...|+.++++.+.....-.+ ....+......++.++++++.+.
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444433222222 33334455567777777777654
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.67 E-value=5.7 Score=32.00 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 15 EKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 15 ~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
.+..+...+..+-.....|+.++..+...+......+..++..++.++..+...+..+
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444445555555555555555444433
No 20
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.28 E-value=0.85 Score=33.66 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 32 KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM 107 (200)
Q Consensus 32 ~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~~el~~~kk~lE~el~e 107 (200)
.+..++..|...+.+........+..+..++.++.++-+. -|+..++....+-..++.+++....|+.++.+
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas----LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS----LFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH----HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666665555666666666666666666653 33444444444433334555555555554433
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.97 E-value=4.9 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 83 QKAAALASRKKYEADYKDMEQQLEM 107 (200)
Q Consensus 83 ~l~~el~~~~el~~~kk~lE~el~e 107 (200)
.+..+-.-+..++..+.+++.++++
T Consensus 66 ~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 66 DIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334446777888888888887
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.48 E-value=4 Score=27.10 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE 194 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~ 194 (200)
.-|..|....|...-....+....+..+.....++..+...++.+..++..+-.++.++.+.+..|+++..++
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666766666677777777777777777888888888888888888888888888888888877654
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.30 E-value=5.7 Score=28.68 Aligned_cols=86 Identities=12% Similarity=0.222 Sum_probs=48.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Q psy17852 18 ELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV--EAELDDERKQKAAALASRKKYE 95 (200)
Q Consensus 18 e~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e--Ee~~e~~rk~l~~el~~~~el~ 95 (200)
.....+.++.+.-..|+.+++.+.+.....+..+.+.+. .++..+..++..+. +.++...+..+...+..-..|.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445666666677777777777776666666665542 44555555555443 2344444444444444445666
Q ss_pred HHHHHHHHHHH
Q psy17852 96 ADYKDMEQQLE 106 (200)
Q Consensus 96 ~~kk~lE~el~ 106 (200)
..|-.|+.+|.
T Consensus 110 nvKl~Ld~EIa 120 (129)
T 3tnu_B 110 NTKLALDVEIA 120 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666776664
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.00 E-value=6 Score=28.64 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=44.2
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV--EAELDDERKQKAAALASRKKYEA 96 (200)
Q Consensus 19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e--Ee~~e~~rk~l~~el~~~~el~~ 96 (200)
....+.++.+.-..|+.+++.+.+.....+..+.+.+. .++..+..++..+. +.++...+..+...+..-..|..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666777777666666666665555442 34445555544443 23444444444444444455666
Q ss_pred HHHHHHHHHH
Q psy17852 97 DYKDMEQQLE 106 (200)
Q Consensus 97 ~kk~lE~el~ 106 (200)
.|-.|+.+|.
T Consensus 113 vKl~Ld~EIa 122 (131)
T 3tnu_A 113 VKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.08 E-value=10 Score=30.40 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
|..+-..+..+......|..++.++...+......+..+......++..+..+...+.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~ 70 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777777788777777777777777776666666666666555554
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.85 E-value=9.4 Score=29.64 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
.|..........+.++..-+....-.-+.|+.+++ .+|+.+......|..+...+..++..|+.++.
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555543 45555566666666666666666666666655
No 27
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=86.55 E-value=3.5 Score=28.61 Aligned_cols=67 Identities=27% Similarity=0.261 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYE-----ADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE-----~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el 183 (200)
.++++ ..|.+|+..++.+.+++..+.+-+.-+. ++-..++.+|.++...+..+.-.+.+++.-+.++
T Consensus 17 kkkL~-~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 17 RKRLQ-QQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777 8899999999999999999988876544 3444456677766666666666666665555554
No 28
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=83.42 E-value=8.5 Score=26.18 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE 194 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~ 194 (200)
..+-.|+..|+.+.-++..+.++++.+++-++.++.+-+.-+ +.++.+++.+.+.-.-++.+.-+|
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~-------~~i~el~akidd~Lk~l~~EklAk 69 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAERE-------KRLRELEAKLDETLKNLELEKLAR 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcccHHHHHH
Confidence 567889999999999999999999999888887777655433 345566666666666666665554
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.41 E-value=10 Score=26.26 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 143 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185 (200)
Q Consensus 143 ~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~ 185 (200)
+....++.++..++..|..+........+......+.+..|..
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555555555544443
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.29 E-value=11 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q psy17852 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEA 75 (200)
Q Consensus 6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe 75 (200)
...|.+|..+++.+......+.-....++..++|+...+++. -......+..+..++..+++.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E-------~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHhhhcccHH
Confidence 445555555555555544444444444444444444444433 334445666677777776653
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.14 E-value=29 Score=30.73 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy17852 139 AAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLA 193 (200)
Q Consensus 139 ~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~ 193 (200)
.+....+..++.++..++..++.......++.++...+..+++.+...+++-=.+
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3334445666677777778787777777778888888888888887776654333
No 32
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.55 E-value=16 Score=27.40 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.++..|..|...|..|......|.+.+.+|+..|.+|...|...
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777666543
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.52 E-value=12 Score=25.81 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 141 ALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185 (200)
Q Consensus 141 ~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~ 185 (200)
+.+..+.++.++..++..|..++.....+.+......+.+..|..
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555555545555444444444444443
No 34
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.12 E-value=10 Score=24.96 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
+..++..|-.+..++-.....|.-.+..|-..+++|+...+-....+..+...+-+++.-+.++.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888888888889999999999999888888888777777767765555443
No 35
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.87 E-value=15 Score=25.40 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
+...+..|+-..+.+.++.+.++...+.+......+... +..|.++...++.++.....
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~E-------i~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDD-------IVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776666665555444444443333 33444444444444443333
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.40 E-value=11 Score=24.95 Aligned_cols=43 Identities=16% Similarity=-0.066 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
.||..+.-.+..++..|.....-++.+..++.++.-|...+.+
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555544
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.15 E-value=17 Score=24.91 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69 (200)
Q Consensus 6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k 69 (200)
...+..|+-..+.+.++.+.++...+.+......+.. .+..+.++...++..+....
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~-------ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEE-------EQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667766666666555544444443333 33344444444444444333
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.50 E-value=18 Score=24.26 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE 74 (200)
Q Consensus 20 ~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE 74 (200)
+.++..+...+.+|..+++.+...+++.......--......+..+..++..+++
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333334444445555555555555444444433333344555555555555554
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.85 E-value=19 Score=24.43 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKR 186 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~ 186 (200)
+|.|+ .+-..|...+..-... .........++.+.+|+.+++.+...+..+.-.+..++..+.++...
T Consensus 25 VR~LE-qqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 25 VRFLE-QQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444 4444444444332221 12234456789999999999998888888888888888877777654
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.39 E-value=21 Score=24.24 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELD 78 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e 78 (200)
.++.|-..+....+++..||..++.|+.++..+...- .. .-...|+.++.+++..+++-..+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~---~~------~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG---KS------RLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999998876531 11 12235888999999988864433
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.97 E-value=29 Score=25.31 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
.+-.++..++..++.+.+....+.+.+..|+.++..|+..+++
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666667777777777777777777777777777766654
No 42
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=69.43 E-value=31 Score=25.45 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=55.1
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
+..+. .++++.....++.-+--.++.+....++++|...+..++.+...+..++..++..-..++.|...-+.
T Consensus 54 ~~~lE-~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek 126 (147)
T 2b9c_A 54 MEIQE-IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE 126 (147)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 44566 66777777777777767777777778888888888888888888888888888888888877665443
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.75 E-value=29 Score=24.79 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 138 KAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183 (200)
Q Consensus 138 r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el 183 (200)
+.++....-.|.+.++.|+.+|++....+..|.-....|...+.++
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555444444444444333333
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.11 E-value=32 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy17852 94 YEADYKDMEQQL 105 (200)
Q Consensus 94 l~~~kk~lE~el 105 (200)
+.+.+.+||+.+
T Consensus 122 l~~~~~~le~~~ 133 (138)
T 3hnw_A 122 YQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 45
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.02 E-value=33 Score=24.50 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK 196 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~ 196 (200)
|..++..|...++ +-..+++..+..|.++|..|..+|++.+..+++
T Consensus 20 Lkreie~lk~ele---~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 20 LYREISGLKAQLE---NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 235556666666666666666666665544433
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.80 E-value=67 Score=27.54 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 125 ~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~ 192 (200)
..||..|++.++.-..+..+-..+-..+--|+..|+ +..++.++.+..++++|..+-.+|.+..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD---AEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.78 E-value=30 Score=23.11 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~e 64 (200)
+..+...+++...+.+.=-..+..++.++.-|...++++.-+...|+.+.-.+..+
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444444444333333
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.58 E-value=36 Score=24.04 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~ 192 (200)
.+++ ..++++...++++...|. .+|+++..+.-.++.+.-.+.+++..+..|...|.=|..-.+++-.
T Consensus 44 dn~~-~~~edfk~KyE~E~~~r~-------~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~ 111 (119)
T 3ol1_A 44 DNLA-EDIMRLREKLQEEMLQRE-------EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQ 111 (119)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhHHHHHHHH-------HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 666666666666655444 4678888888888888888888888888887777777666665544
No 49
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.31 E-value=33 Score=22.81 Aligned_cols=15 Identities=0% Similarity=0.018 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17852 92 KKYEADYKDMEQQLE 106 (200)
Q Consensus 92 ~el~~~kk~lE~el~ 106 (200)
..+...|-.|+.+|.
T Consensus 59 q~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 59 QELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 445556666666554
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.77 E-value=44 Score=23.76 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~ 181 (200)
..+..|...|+.+.... .+..+.++++|..|-..|..+......+.+....+..+|-
T Consensus 53 qTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 45778888887776665 4567888888888888887777777666666666655554
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.24 E-value=2.1e+02 Score=31.49 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~ 178 (200)
..+..++..+.........+....+.++..+..|+.+++.+.+.+..++..+...+.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555555555555555555555555554444444444433333
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.20 E-value=27 Score=21.11 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 149 EADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 149 E~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
+..+.+++.++......+..+...++....+|..|..+||.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888888888875
No 53
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.61 E-value=44 Score=22.74 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQ 47 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~ 47 (200)
.+...|..+...-..+...+..|++.+..+..+|..+.......
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554444433
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.97 E-value=57 Score=23.27 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDL 44 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~l 44 (200)
.+|.++...+..+...+..+...+..|+..+.++....
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554443
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.26 E-value=53 Score=21.80 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~ 42 (200)
+|..+|+.+-+-+.-+.-.+.+|...+..|..+.+++.+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444443333
No 56
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.43 E-value=75 Score=23.34 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHHhhHHHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 100 DMEQQLEMNNKLKEDA---LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 100 ~lE~el~e~~~~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
.|+.++.++-...+++ +--.. +.|.-++..|+...-....+....+.|+.+|..+-..|-...-.-..+...-..|
T Consensus 56 ~lE~qLkeak~~aeeadrKyeE~~-RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~y 134 (147)
T 2b9c_A 56 IQEIQLKEAKHIAEDADRKYEEVA-RKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHL 134 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 4555555544444444 22333 3344555555544444444444444454444444444444444434444444444
Q ss_pred HHHHHHHH
Q psy17852 177 QVHELEKA 184 (200)
Q Consensus 177 ~~~i~elq 184 (200)
..+|+.|.
T Consensus 135 ee~I~~L~ 142 (147)
T 2b9c_A 135 ENEVARLK 142 (147)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHHH
Confidence 44444443
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=49.03 E-value=66 Score=22.57 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 150 ADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 150 ~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
..+.=+.......-..+..+...+-.|..++.-||.++
T Consensus 69 aQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 69 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333343333344445555556666666665554
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.32 E-value=57 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q psy17852 15 EKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD 53 (200)
Q Consensus 15 ~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~ 53 (200)
-++.+..++..+--.-.-|+.|+++|..........+.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666776666665554444444
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.31 E-value=82 Score=23.42 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q psy17852 22 LNDKLEKSKKKLQSELDDITIDLETQRAKVVD 53 (200)
Q Consensus 22 ~~~~ler~kk~L~~El~dl~~~le~~~~~~~~ 53 (200)
.+..|+.....+...+.++...+..-...+..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~ 100 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTER 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 60
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=48.21 E-value=63 Score=22.09 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 162 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a 162 (200)
+..|...|+.+...-..-....+.++++|..|-..|.++
T Consensus 48 V~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 48 VVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333444444444444444333
No 61
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.65 E-value=72 Score=22.61 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=19.8
Q ss_pred HHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852 35 SELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72 (200)
Q Consensus 35 ~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~ 72 (200)
.|+.++...+......+..+...+..++..+.+....+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555444
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=46.96 E-value=57 Score=21.23 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy17852 5 QKKENEVLEREKEELQALNDKLEKSKK 31 (200)
Q Consensus 5 L~~~l~~l~~~lee~~~~~~~ler~kk 31 (200)
+...+..+....+.+..+...++...+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~ 30 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKK 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555544433
No 63
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=46.60 E-value=46 Score=28.61 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
....+..++.....|+..+.++...+.+........+...+++.-.+.+++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334444444445555555555555555555555666667777777777664
No 64
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.86 E-value=64 Score=21.23 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=46.1
Q ss_pred HHHHH-HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 111 LKEDA-LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA 184 (200)
Q Consensus 111 ~~ee~-~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq 184 (200)
+.+|+ .|.+. ..+...+++|+.-.+..+++.....+++.=+..|+..-.. +++.+..|.....+|.
T Consensus 7 AVeDKLRrrl~-E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~-------l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 7 AVSDKLRWRMK-EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE-------VDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44566 34666 8899999999999999999999888887777766655544 4444444444444443
No 65
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=41.83 E-value=47 Score=18.78 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELD 38 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~ 38 (200)
.++.|...+....+++-.|+..++.|+.++.
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777777776654
No 66
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.76 E-value=74 Score=21.06 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 23 NDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 23 ~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+..=-++|.-++.||.-+....-.....+.+.+.+++.+..++..++..+.
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666666666666666555555555555555555555555554444
No 67
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.37 E-value=79 Score=20.94 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~ 179 (200)
|..++..+....+.-.++..+.-.|..++..|+.+++........+.+.-+.+-..
T Consensus 8 v~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 8 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333444444555666666677777777777777666666665554444433
No 68
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=39.51 E-value=64 Score=19.70 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 149 EADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 149 E~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
..+..-|...|+...+++..++..++++
T Consensus 23 ~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 23 RQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.31 E-value=78 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
.++..+.+|+..+...+..+.++...+-..+.+|..|+.++.-
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888877754
No 70
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=38.95 E-value=63 Score=19.47 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
||+++..|...+-..|.+..++..-.+.+-.-+.++|.++.+
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN~ 43 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999888765
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.53 E-value=1e+02 Score=21.82 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 129 AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 129 ~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
.+|-..+..-.+...+....-..+..|...|+....+. ++.+..|++.|+.|-..|
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444555554433332 344555555555443333
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.59 E-value=69 Score=19.23 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHH
Q psy17852 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQ 47 (200)
Q Consensus 7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~ 47 (200)
.++.++..++..+..+...|...-+....+|..|...++..
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666666666665543
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.32 E-value=87 Score=20.27 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852 165 LKEDALKQLKKLQVHELEKAKRLLES 190 (200)
Q Consensus 165 ~~~~a~k~~~~l~~~i~elq~~lee~ 190 (200)
.+..+++.+......|..|+.+||..
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555666665543
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.30 E-value=92 Score=20.54 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 26 LEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 26 ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
+...-..++.++..+..+..........|=..+-.+|.+++.++.-++
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 333444455556566555555555555555666677777777776554
No 75
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.12 E-value=1.1e+02 Score=21.30 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q psy17852 172 QLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~ 192 (200)
.+..++..|.+|+.+|-+..+
T Consensus 83 ~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888877765
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.20 E-value=2.5e+02 Score=25.19 Aligned_cols=71 Identities=6% Similarity=0.042 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 117 KQLKKLQLREVEAELDDERKQKAAALASR-------------------------KKYEADYKDMEQQLEMNNKLKEDALK 171 (200)
Q Consensus 117 r~l~~~qi~elq~~Leee~r~r~e~~~~~-------------------------kklE~el~ele~qLe~a~r~~~~a~k 171 (200)
+.+. ..|.+|...|++-.+.+.++.... ..|+..+..|++.+..--..++.|+.
T Consensus 60 rDlt-krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 60 QDFT-NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhH
Q psy17852 172 QLKKLQVHELEKAKRLL 188 (200)
Q Consensus 172 ~~~~l~~~i~elq~~le 188 (200)
.++.+-..|..|..+++
T Consensus 139 nLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.03 E-value=1.9e+02 Score=24.73 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 25 KLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 25 ~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
..+.....++.+.+.+....+........+...+.++...+.++...+.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3333444455555555555555555555555555555555555554443
No 78
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.95 E-value=99 Score=20.23 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 30 KKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 30 kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
...|+.++..+..+..........|=..+-.+|.+++.++.-++
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33444444444444444444444444555556666665555443
No 79
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.45 E-value=66 Score=18.04 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=18.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHh
Q psy17852 15 EKEELQALNDKLEKSKKKLQSELDDITID 43 (200)
Q Consensus 15 ~lee~~~~~~~ler~kk~L~~El~dl~~~ 43 (200)
-+++...++..++..-..|..|..+|..+
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777776666666666666543
No 80
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.27 E-value=90 Score=19.52 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~e 182 (200)
.-|..+..-+...+++..+++..+++.++++-.+.++
T Consensus 17 ~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 17 QELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455566667778888888888888888888777654
No 81
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.92 E-value=1.1e+02 Score=20.22 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhHHH---HhHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy17852 13 EREKEELQALNDKLEKSKKKLQSELDDIT---IDLETQRAKVVDLEKKQRNFDKVLAEE 68 (200)
Q Consensus 13 ~~~lee~~~~~~~ler~kk~L~~El~dl~---~~le~~~~~~~~lek~~r~~e~el~e~ 68 (200)
+..++.+...|+.|+.....|+..+.+.. .+.+........+......++.....|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777776632 344444444444444444444333333
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.42 E-value=94 Score=26.61 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=22.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 168 (200)
Q Consensus 123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~ 168 (200)
+|..+..++........+.....+.++.++.++...+-..+..++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444433333
No 83
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.40 E-value=88 Score=19.16 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 141 ALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185 (200)
Q Consensus 141 ~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~ 185 (200)
+.+-..+--..+.+|+..++.....+..+...+..|..++..|..
T Consensus 13 A~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 13 ASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445555666665566666666666666655554433
No 84
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.52 E-value=1.4e+02 Score=21.04 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q psy17852 172 QLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~ 192 (200)
.+..++..|.+|+.+|-+...
T Consensus 70 ~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 70 VAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877665
No 85
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.89 E-value=1.3e+02 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q psy17852 23 NDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55 (200)
Q Consensus 23 ~~~ler~kk~L~~El~dl~~~le~~~~~~~~le 55 (200)
.+.|...|..|-=+++=|...+++.......+.
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 86
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.28 E-value=1.5e+02 Score=25.54 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~ 70 (200)
+...|..++.++..++..+++..+.+..++..+..++ ...+...+++.-.+.+++.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCC
Confidence 4466777777777777777777777777777776554 3344556666666666553
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.48 E-value=99 Score=18.82 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17852 150 ADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKR 186 (200)
Q Consensus 150 ~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~ 186 (200)
..+.+|+...+........+...+..|..++..|...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665543
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.84 E-value=2.9e+02 Score=24.06 Aligned_cols=9 Identities=11% Similarity=0.553 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q psy17852 34 QSELDDITI 42 (200)
Q Consensus 34 ~~El~dl~~ 42 (200)
+.++.++..
T Consensus 455 ~~e~~~~~~ 463 (597)
T 3oja_B 455 EAEVNELRA 463 (597)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 89
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.71 E-value=1e+02 Score=18.79 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852 32 KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV 73 (200)
Q Consensus 32 ~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e 73 (200)
.|+.++..+..+..........|=..+-.++.+++.++.-++
T Consensus 11 ~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 11 ELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 344455555555555444555555666777888877776544
No 90
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.42 E-value=1.3e+02 Score=19.68 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q psy17852 172 QLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~ 192 (200)
.+..++..|.+|+.+|-+...
T Consensus 53 ~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 53 AVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888877665
No 91
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.26 E-value=1.4e+02 Score=19.75 Aligned_cols=42 Identities=7% Similarity=0.062 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee 189 (200)
+-.++++|..-+++.+-.+.+.++.++.....+..||.+|+.
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445566666666666666666666666666666666665553
No 92
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.11 E-value=2.4e+02 Score=23.49 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188 (200)
Q Consensus 148 lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le 188 (200)
|..++..++..+-.....+..++..+..++..|.+|+.++.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 93
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.59 E-value=1.4e+02 Score=19.60 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
..|+..+..++.+|+++.-....+...+..+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555554444443333333
No 94
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.53 E-value=1.4e+02 Score=19.66 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh
Q psy17852 26 LEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR 59 (200)
Q Consensus 26 ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r 59 (200)
+-..-..|+.|+..|...++...-.+..+.+.++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555554444444444433
No 95
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.73 E-value=1.9e+02 Score=20.81 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhh
Q psy17852 179 HELEKAKRL 187 (200)
Q Consensus 179 ~i~elq~~l 187 (200)
++.||..+|
T Consensus 117 ql~dL~qqL 125 (130)
T 3cl3_D 117 QLEDLKQQL 125 (130)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 333443333
No 96
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.53 E-value=1.1e+02 Score=18.22 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 139 AAALASRKKYEADYKDMEQQLEMNNKLKEDAL 170 (200)
Q Consensus 139 ~e~~~~~kklE~el~ele~qLe~a~r~~~~a~ 170 (200)
.-+.+.+.+++..+.+|+..|....-......
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44567777788888888877765544443333
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.16 E-value=1.7e+02 Score=20.09 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=21.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852 14 REKEELQALNDKLEKSKKKLQSELDDITIDLET 46 (200)
Q Consensus 14 ~~lee~~~~~~~ler~kk~L~~El~dl~~~le~ 46 (200)
+.+..+...++.|++.+.+|..+++.|...++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666644
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.08 E-value=1.4e+02 Score=19.20 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
..|+..+..++.+|+++.-....+...+..+
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655444444444444
No 99
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.05 E-value=1.3e+02 Score=18.55 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 141 ALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 141 ~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
|.+-..+--..+.+|+...+.....+..+...+..|..++..|...|
T Consensus 14 A~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 14 AAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555666666666666666666666666665555443
No 100
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.76 E-value=1.7e+02 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q psy17852 172 QLKKLQVHELEKAKRLLESQL 192 (200)
Q Consensus 172 ~~~~l~~~i~elq~~lee~~~ 192 (200)
.+..++..|.+|+.+|-+...
T Consensus 53 ~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 53 AVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888877665
No 101
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.52 E-value=1.8e+02 Score=20.29 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=4.5
Q ss_pred HHHHHhhhHHH
Q psy17852 124 LREVEAELDDE 134 (200)
Q Consensus 124 i~elq~~Leee 134 (200)
|+.|...|...
T Consensus 26 i~~L~~~L~~A 36 (110)
T 2v4h_A 26 LEDLRQQLQQA 36 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 102
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.34 E-value=3.3e+02 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 172 (200)
Q Consensus 124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~ 172 (200)
...|..+|.+.+....++.+..+.+..++..+..+|-..+..+..+-..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777765555444444333
No 103
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.73 E-value=1.8e+02 Score=19.79 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHhhHHHHHh
Q psy17852 144 SRKKYEADYKDMEQQLEMNNKLKEDALK--------------------------QLKKLQVHELEKAKRLLESQLA 193 (200)
Q Consensus 144 ~~kklE~el~ele~qLe~a~r~~~~a~k--------------------------~~~~l~~~i~elq~~lee~~~~ 193 (200)
.++++...|.+++..++-+.+++.-+.+ .+..|...+.-++..|.+....
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567788888888888877777555555 4455566666666666666543
No 104
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=22.97 E-value=1.7e+02 Score=19.46 Aligned_cols=30 Identities=10% Similarity=-0.154 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852 162 NNKLKEDALKQLKKLQVHELEKAKRLLESQ 191 (200)
Q Consensus 162 a~r~~~~a~k~~~~l~~~i~elq~~lee~~ 191 (200)
+.+.+..+...++....++.+|+.+|.+-.
T Consensus 54 ~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 54 LGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777778888888888888777643
No 105
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.21 E-value=2.1e+02 Score=20.06 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 118 QLKKLQLREVEAELDDERKQKAAALASR----KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182 (200)
Q Consensus 118 ~l~~~qi~elq~~Leee~r~r~e~~~~~----kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~e 182 (200)
+|+ .++..|+..|..+..-+.++.... ......+..|..+...++.....+.+.+..++..+.+
T Consensus 10 ~lq-~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 10 KLQ-LMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455555555555555555554443 2344556666666666666666666655555554443
No 106
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.02 E-value=1.5e+02 Score=18.28 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187 (200)
Q Consensus 146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l 187 (200)
.+--....+|+..+......+..+...+..|+.++.-|..-|
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666666666666666666666555444
No 107
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.12 E-value=4.4e+02 Score=23.45 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 149 EADYKDMEQQLEMNNKLKEDALKQLKKL 176 (200)
Q Consensus 149 E~el~ele~qLe~a~r~~~~a~k~~~~l 176 (200)
..=+..+...|+.++.....+......|
T Consensus 348 ~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 348 VQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 3344445555555555555555544443
No 108
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.11 E-value=1.6e+02 Score=18.29 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q psy17852 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD 53 (200)
Q Consensus 8 ~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~ 53 (200)
+.-+++.++.....++..|-+.+..|..|+.-+...+.........
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 4567788888888889999999998888888777777665544433
No 109
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.35 E-value=1.7e+02 Score=18.50 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179 (200)
Q Consensus 147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~ 179 (200)
.-+..+.+|+..|......+..+...+.+|++-
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666777766666666666666665543
Done!