Query psy17852
Match_columns 200
No_of_seqs 114 out of 749
Neff 7.6
Searched_HMMs 13730
Date Sat Aug 17 00:42:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17852.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17852hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 20.9 94 0.0069 19.4 11.4 19 122-140 22-40 (107)
2 d2ncda_ c.37.1.9 (A:) Kinesin 19.8 81 0.0059 24.3 5.6 41 2-42 5-45 (368)
3 d2azeb1 e.63.1.2 (B:201-301) T 14.3 1.4E+02 0.011 18.6 6.1 35 152-186 3-37 (101)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 9.9 1.5E+02 0.011 16.4 4.8 31 167-197 29-59 (61)
5 d2a26a1 a.2.16.1 (A:1-47) Calc 7.7 1.8E+02 0.013 15.4 5.9 36 148-183 6-43 (47)
6 d1wu9a1 a.245.1.1 (A:191-249) 6.7 2.3E+02 0.017 15.9 5.3 23 9-31 3-25 (59)
7 d1seta1 a.2.7.1 (A:1-110) Sery 6.6 2.9E+02 0.021 16.8 8.0 24 122-145 35-58 (110)
8 d2ap3a1 a.24.27.1 (A:12-196) H 4.4 4.1E+02 0.03 16.0 16.7 161 28-189 8-183 (185)
9 d1zkea1 a.30.6.1 (A:1-79) Hypo 4.2 3.9E+02 0.029 15.6 3.8 25 9-33 52-76 (79)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 3.8 3.9E+02 0.029 15.0 4.6 31 9-39 49-79 (79)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.88 E-value=94 Score=19.39 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=8.2
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAA 140 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e 140 (200)
.++..+...+.+......+
T Consensus 22 ~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 22 VQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 2
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=19.83 E-value=81 Score=24.31 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITI 42 (200)
Q Consensus 2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~ 42 (200)
++.|...++.+..+++++..+.......+++|..++.|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 45 (368)
T d2ncda_ 5 TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRG 45 (368)
T ss_dssp SGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 35677777777777777777776666667777777776553
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.28 E-value=1.4e+02 Score=18.63 Aligned_cols=35 Identities=6% Similarity=-0.010 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17852 152 YKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKR 186 (200)
Q Consensus 152 l~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~ 186 (200)
+..|+.+++.....-..+...++.++.+++.+...
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44455555555555566666666666666666544
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.93 E-value=1.5e+02 Score=16.36 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852 167 EDALKQLKKLQVHELEKAKRLLESQLAEQKN 197 (200)
Q Consensus 167 ~~a~k~~~~l~~~i~elq~~lee~~~~~~~~ 197 (200)
..|...+..|+.++..|..+...-+...++|
T Consensus 29 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 59 (61)
T d1uklc_ 29 RKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666677777777776666665555554
No 5
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.70 E-value=1.8e+02 Score=15.43 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy17852 148 YEADYKDMEQQLEMN--NKLKEDALKQLKKLQVHELEK 183 (200)
Q Consensus 148 lE~el~ele~qLe~a--~r~~~~a~k~~~~l~~~i~el 183 (200)
+..|+.+...-|+.+ .|-++.+.-..++++..|+.-
T Consensus 6 lqkDLeEvk~LLekaTRkRvrd~Lt~Ek~kletEik~k 43 (47)
T d2a26a1 6 LQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNK 43 (47)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554 344555555666666666543
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.69 E-value=2.3e+02 Score=15.87 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKK 31 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk 31 (200)
+.+|..++.++...+..+++.+.
T Consensus 3 ~~~L~~ei~elk~~v~~lEkERd 25 (59)
T d1wu9a1 3 AAELMQQVNVLKLTVEDLEKERD 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555543
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=6.61 E-value=2.9e+02 Score=16.81 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=11.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy17852 122 LQLREVEAELDDERKQKAAALASR 145 (200)
Q Consensus 122 ~qi~elq~~Leee~r~r~e~~~~~ 145 (200)
...++++..++.-+..++.+.+..
T Consensus 35 ~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 35 REVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443
No 8
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=4.36 E-value=4.1e+02 Score=16.00 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 28 KSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM 107 (200)
Q Consensus 28 r~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~~el~~~kk~lE~el~e 107 (200)
.....-...+.+....+......+..++.....+...+...........+..........................++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (185)
T d2ap3a1 8 KAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKK 87 (185)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------hhHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852 108 ---------------NNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 172 (200)
Q Consensus 108 ---------------~~~~~ee~~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~ 172 (200)
............. ..+..+...+.........+......+...+..+...+.........+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 166 (185)
T d2ap3a1 88 AKSHVDNIDNDVKRKEVKQLDDVLKEKY-KLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEV 166 (185)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy17852 173 LKKLQVHELEKAKRLLE 189 (200)
Q Consensus 173 ~~~l~~~i~elq~~lee 189 (200)
+..+...+..+.....+
T Consensus 167 ~~~~~~~~~~~~~ek~~ 183 (185)
T d2ap3a1 167 SDKYTKVLNKVQKEKQD 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
No 9
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=4.20 E-value=3.9e+02 Score=15.59 Aligned_cols=25 Identities=40% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKL 33 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L 33 (200)
++...++++.+.+.++.|.+.|+.+
T Consensus 52 l~qid~ev~kLK~~IdaLNKiKke~ 76 (79)
T d1zkea1 52 FTQLSEEVERLKELINALNKIKKGL 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.84 E-value=3.9e+02 Score=15.02 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhH
Q psy17852 9 NEVLEREKEELQALNDKLEKSKKKLQSELDD 39 (200)
Q Consensus 9 l~~l~~~lee~~~~~~~ler~kk~L~~El~d 39 (200)
|..|...+......+..|.+....|...+++
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~ 79 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!