RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17852
(200 letters)
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 47.3 bits (113), Expect = 2e-06
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
K ++ LE E A D LEK+K +LQSEL+D+ I+LE A +LEKKQ+NFDK
Sbjct: 325 KLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDK 384
Query: 64 VLAEEKLREVEAELDDERKQKAA 86
+LAE K + E + + + Q+ A
Sbjct: 385 ILAEWKRKVDELQAELDTAQREA 407
Score = 45.0 bits (107), Expect = 9e-06
Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV-VDLEKKQRNFD--K 63
K LE EK+ELQA ++ E + + +S++ ++L R+++ L +K+ F+ +
Sbjct: 461 KARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTR 520
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
+ + ++A L+ E K KA A +KK E D ++E L+ NK +A K +KK
Sbjct: 521 KNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQ 580
Query: 123 -QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
Q++E++ ++++E++ + A E +E +LE
Sbjct: 581 QQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELE 619
Score = 32.7 bits (75), Expect = 0.11
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
L++++ E L + E+ QAL +L+K K+L++ + ++ +LE +RA EK + +
Sbjct: 13 LYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKAEKARADL 72
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
+L E+ L++ AA + KK EA+ + + LE N E+AL L+K
Sbjct: 73 -----SRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATLRK 127
Query: 122 LQ---LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
+ E+ +++ +KQKA A + + +A+ D+ QL+ K K +A K+ K+L+
Sbjct: 128 KHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLES 187
Query: 179 HELEKAKRLLESQ 191
E +L E Q
Sbjct: 188 QLSELQVKLDELQ 200
Score = 30.4 bits (69), Expect = 0.74
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
K + L + E+LQ K EK K +LQ+E+DD+ L+ ++ EKK +
Sbjct: 128 KHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQL-- 185
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
E +L E++ +LD+ ++Q + + + +++ D+ +QLE + K +L
Sbjct: 186 ---ESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLE 242
Query: 123 -QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
QL E + L++E +++A A ++ E D + +QLE ++ K + +QL K
Sbjct: 243 SQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA 299
Score = 28.1 bits (63), Expect = 3.4
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 25 KLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQK 84
LE+ +K+L+S++ ++ + L+ A + KK E ++RE+EAELD E+++
Sbjct: 711 HLERLRKQLESQVKELQVRLDEAEAAALKGGKKMIQ----KLEARVRELEAELDGEQRRH 766
Query: 85 AAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
A + +K E K+++ Q+E + K E + KLQ +
Sbjct: 767 AETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVDKLQAK 807
Score = 27.7 bits (62), Expect = 5.2
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 24/200 (12%)
Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAE 76
+ELQ + L K +LQSE D+T LE A+V +L K + + L E K
Sbjct: 197 DELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRS----- 251
Query: 77 LDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QLREVEAELDDE 134
L++E +++A A ++ E D + +QLE ++ K + +QL K ++++ ++ + E
Sbjct: 252 LEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESE 311
Query: 135 RKQKAAALA-SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ---------------- 177
+A L +KK ++E+ E N + K +LQ
Sbjct: 312 GALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAA 371
Query: 178 VHELEKAKRLLESQLAEQKN 197
ELEK ++ + LAE K
Sbjct: 372 ASELEKKQKNFDKILAEWKR 391
Score = 27.7 bits (62), Expect = 5.6
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 19 LQALNDKLEKSKKKLQSELDDITIDLET---QRAKVVDLEKKQRNFDKVLAEEKLREVEA 75
L ++ E ++K Q ++ + LE +A+ L+KK E + E+E
Sbjct: 509 LAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKK--------LEGDINELEI 560
Query: 76 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLRE--VEAELDD 133
LD K A A + KKY+ K+++ Q+E + +EDA +QL + R +EAEL++
Sbjct: 561 ALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEE 620
Query: 134 ERKQKAAALASRKKYEADYKD 154
R A +RK+ E + +
Sbjct: 621 LRSALEQAERARKQAETELAE 641
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 42.4 bits (100), Expect = 8e-05
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
+ ++++E E LE + EEL+ +LEK+ +L+ EL+++ +LE R ++ +L ++
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
Query: 62 DKVLA---------EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLK 112
K LA EE++ ++ EL + + ++ E + + E ++E
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Query: 113 EDALKQLKKL--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDAL 170
E ++LK L L E+ AEL ++ A + E E++LE + E+
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
Query: 171 KQLKKL--QVHELEKAKRLLESQLAEQKN 197
+ ++ L ++ ELE+ LES+L N
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLN 880
Score = 40.8 bits (96), Expect = 3e-04
Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Query: 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64
++ LER+ EEL+A ++LE +L EL ++ LE + ++ LE + +
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Query: 65 L--AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
L E +L E+E +L+ R + A + + +E +LE +E +++++L
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
Query: 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182
+ EAEL + + + ++ + + + +E+ LE + E+A + L + +
Sbjct: 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
Query: 183 KAKRL 187
RL
Sbjct: 487 LQARL 491
Score = 36.6 bits (85), Expect = 0.006
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69
E L E EELQ + E+ ++L +EL ++ LE R +V +LE++ +++
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE-----ELQKE 289
Query: 70 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QLREV 127
L + E+ +QK E +++E QLE ++ ++L +L +L E+
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
Query: 128 EAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL 187
+ EL+ + A ++ E+ +++E+QLE Q+ L +E+E+ +
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN-NEIERLEAR 408
Query: 188 LESQLAEQKNT 198
LE ++
Sbjct: 409 LERLEDRRERL 419
Score = 35.8 bits (83), Expect = 0.010
Identities = 39/202 (19%), Positives = 93/202 (46%), Gaps = 14/202 (6%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ ++E E L E +EL+ ++L +L+ E++++ +L ++ LE+ K
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ-----QK 304
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
+ E+L +E +L++ Q + + + ++E++LE + E +L++L
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Query: 123 --------QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 174
+L E+E +L+ R + A + + +E +LE +E ++++
Sbjct: 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
Query: 175 KLQVHELEKAKRLLESQLAEQK 196
+L E + L+++L E +
Sbjct: 425 ELLKKLEEAELKELQAELEELE 446
Score = 31.6 bits (72), Expect = 0.29
Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRN--FDKVL 65
E E E EEL+A ++L++ K L+ LD++ +L + +L ++ +
Sbjct: 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--- 122
E +L ++E ++++ + + A ++ E +++E +LE + + L L
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
Query: 123 --QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 162
+L E EL+ +R + L ++ A + + LE+
Sbjct: 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Score = 28.5 bits (64), Expect = 3.3
Identities = 24/126 (19%), Positives = 57/126 (45%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ + E E LE EEL+ + L +L+ ++ + ++E A++ LE ++ +
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
+ E + EAEL + + + ++ + + + +E+ LE + E+A + L +
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
Query: 124 LREVEA 129
+
Sbjct: 482 RELAQL 487
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 42.4 bits (100), Expect = 9e-05
Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 4/195 (2%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
++E E L+ EEL+ LE+ + ++SEL ++ +E + LE+ + + L
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
+ ++ E++AEL ++ + A ++ E + + E K ++ +Q L+ +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
Query: 126 --EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--VHEL 181
+E E+++ +K ++ EA +D+E +L K +++ QL++L+ + EL
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Query: 182 EKAKRLLESQLAEQK 196
E +L+E K
Sbjct: 909 EAQIEKKRKRLSELK 923
Score = 34.7 bits (80), Expect = 0.029
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66
KE E LER+KE ++ LE+ +KL E+ ++ LE + +L KK ++ L
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD----LG 285
Query: 67 EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLRE 126
EE+ V+ ++ + + A+ S + E + +D E++L K +A ++ E
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-----KLEAEIDKLLAEIEE 340
Query: 127 VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKR 186
+E E+++ERK++ + + + +D+ +LE +K + +LK + +LEK KR
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE-KLEKLKR 399
Query: 187 LLESQLAEQ 195
+ E
Sbjct: 400 EINELKREL 408
Score = 34.3 bits (79), Expect = 0.040
Identities = 39/205 (19%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ E + L E L+ L+ +++++ LD+++ +L K+ ++EK+ ++
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
Query: 64 VLA--EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
+E+L E+E +L ++ + K+ EA +++E+ L + D +L
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ---- 177
++ E++AEL ++ + A ++ E + + E K ++ +Q L+
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 178 -----VHELEKAKRLLESQLAEQKN 197
+ L K LE +L E +
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEA 875
Score = 32.3 bits (74), Expect = 0.16
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69
ERE E+ + KLE KL +E++++ ++E +R + L ++ + L E
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL--ED 368
Query: 70 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEA 129
LR E+D E + L ++ K +L+ ++ L++L + +L ++ A
Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE-ELADLNA 427
Query: 130 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--VHELEKAKRL 187
+ + ++ + K E +LE ++L L+ +EK
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
Query: 188 LESQLAE 194
L+ +LAE
Sbjct: 488 LQRELAE 494
Score = 30.4 bits (69), Expect = 0.66
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLE-------TQRAKVVDLEK 56
K E E LERE EE + DKL + +L+ EL+D+ +LE R ++ D +
Sbjct: 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
Query: 57 K-----------QRNFDKVL-----AEEKLREVEAELDDERKQKAAALASRKKYEADYKD 100
K +R D++ E+L ++ A + + ++ + K
Sbjct: 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
Query: 101 MEQQLEMNNKLKEDALKQLKKLQ--LREVEAELDDERKQKAAALASRK 146
E +LE ++L L+ VE EL +++ A A A +
Sbjct: 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.7 bits (86), Expect = 0.006
Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ +++ E E +E + L ++LE+ K+KLQ E D + + E + + +
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK---------- 580
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
A+++ E+ EL +K A++ + + + ++L N+ KE K+ KK +
Sbjct: 581 -EAKKEADEIIKELRQLQKGGYASVKAH-----ELIEARKRLNKANEKKE---KKKKKQK 631
Query: 124 LREVEAELDDERK-----QKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
++ E ++ DE K QK L+ EA + Q M K+ L++++K +
Sbjct: 632 EKQEELKVGDEVKYLSLGQKGEVLSIPDDKEA----IVQAGIMKMKVPLSDLEKIQKPKK 687
Query: 179 HELEKAKR 186
+ +K K
Sbjct: 688 KKKKKPKT 695
Score = 31.0 bits (71), Expect = 0.48
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 89 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKY 148
++ E ++ E L+ KLKE+ ++ +KLQ E + + E++ + A ++K+
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586
Query: 149 EADYKDMEQQLEM---NNKLKE--DALKQLKKLQVHELEKAK 185
+ K++ Q + + K E +A K+L K + EK K
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNK-ANEKKEKKK 627
Score = 27.5 bits (62), Expect = 5.1
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 68 EKLREVEAELDDERKQKAAALASRKKYEADYKD-MEQQLEMNNKLKEDALKQLK------ 120
L E+E EL+ + ++ A L +K + + ++ E+ E +KL E+A K+ +
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582
Query: 121 KLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
K + E+ EL +K A++ + + + ++L N+ KE K+ K+ Q
Sbjct: 583 KKEADEIIKELRQLQKGGYASVKAH-----ELIEARKRLNKANEKKEKKKKKQKEKQ 634
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 36.1 bits (84), Expect = 0.008
Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64
K + + E K L+A + + K+L++EL + L+ R + +++ ++ +
Sbjct: 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALR-QQLEVISEELEARRK 186
Query: 65 LAEEKLREVEAELDDERKQKAA------ALASRKKYEADYKDMEQQL-EMNNKLKEDALK 117
L E+ L L+ ER++ A A + + +++ + ++ +E+ L+
Sbjct: 187 LKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLE 246
Query: 118 QLKKLQLREVEAELDDERKQKAAA 141
+L E +A L + R++ A
Sbjct: 247 -----ELTEAQARLAELRERLNKA 265
Score = 30.7 bits (70), Expect = 0.48
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 70 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEA 129
L A L E +AA A+ + + ++ L E + K + QL + A
Sbjct: 93 LEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFE-SRKSTLRAQLELILA 151
Query: 130 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189
++ + A A + + + ++LE KLKE L +L++ ELE+ + +
Sbjct: 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVS--RLELLELERERAEAQ 209
Query: 190 SQLAEQK 196
+L +
Sbjct: 210 GELGRLE 216
Score = 26.9 bits (60), Expect = 9.3
Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAE 76
E ++ E K L+++L+ I ++ A++ L+ + + ++L + E
Sbjct: 126 ELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQAL-----RQQLEVISEE 180
Query: 77 LDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKED-ALKQLKKLQLREVEAELDD- 133
L+ RK K L SR + ++E++ E +L A ++ K Q+ E++ E
Sbjct: 181 LEARRKLKEKGLVSR----LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236
Query: 134 ERKQKAAALASRKKYEADYKDMEQQL 159
E+ + L + +A ++ ++L
Sbjct: 237 EQTFREEVLEELTEAQARLAELRERL 262
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 35.6 bits (82), Expect = 0.012
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE- 74
+ + L +K LQS D I L + + E+K K LAE
Sbjct: 9 QIADRKLKKLNTADEKSLQS-RSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQ 67
Query: 75 -----AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEA 129
KQ L +R + + ++ ++ L K A L K QL ++A
Sbjct: 68 NKRQLDRFGLGDKQ-RERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKA 126
Query: 130 ELDDERKQKAAALASRKKYEADYK 153
L++ + A A+ + D+
Sbjct: 127 ALNEALAELHAYYAAEDALQGDWL 150
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 35.7 bits (83), Expect = 0.012
Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 39/197 (19%)
Query: 8 ENEVLEREKE--ELQALNDKLEKSKKKLQSELDDITIDLETQRAK---VVDLEKKQRNFD 62
E E+ E E+E EL+ +LE+ ++L+ + +DL V + +
Sbjct: 99 EKEIKELEEEISELENEIKELEQEIERLEP-WGNFDLDLSLLLGFKYVSVFVGTVPEDKL 157
Query: 63 KVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
+ L E E + ++ + K+ ++ ++LKKL
Sbjct: 158 EELKLESDVENVEYISTDKGYVYVVVVVLKELS-----------------DEVEEELKKL 200
Query: 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH--- 179
+E L++E ++++++LE K +E L++LK+L
Sbjct: 201 GFERLE--LEEEGTPSEL-----------IREIKEELEEIEKERESLLEELKELAKKYLE 247
Query: 180 ELEKAKRLLESQLAEQK 196
EL LE +L +
Sbjct: 248 ELLALYEYLEIELERAE 264
Score = 34.1 bits (79), Expect = 0.041
Identities = 46/249 (18%), Positives = 95/249 (38%), Gaps = 62/249 (24%)
Query: 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET-QRAKVVDLEK----K 57
K++ NE L + + L L++ L+ KL+S L + E ++ V LE+
Sbjct: 36 LKEELSNERLRKLRSLLTKLSEALD----KLRSYLPKLNPLREEKKKVSVKSLEELIKDV 91
Query: 58 QRNFDKVLAE-----EKLREVEAELDDERKQKAA-----------ALASRKKY------- 94
+ +K+ E E++ E+E E+ + ++ +L KY
Sbjct: 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGT 151
Query: 95 --EADYKDMEQQLEMNN-------------------KLKEDALKQLKKLQLREVE----A 129
E ++++ + ++ N +L ++ ++LKKL +E
Sbjct: 152 VPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEG 211
Query: 130 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189
+ ++ L +K E+ E+ K E+ L + L+ ELE+A+
Sbjct: 212 TPSELIREIKEELEEIEKERESLL--EELKELAKKYLEELLALYEYLE-IELERAE--AL 266
Query: 190 SQLAEQKNT 198
S+ + T
Sbjct: 267 SKFLKTDKT 275
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 35.5 bits (82), Expect = 0.015
Identities = 38/188 (20%), Positives = 96/188 (51%), Gaps = 4/188 (2%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK--QRNFDK 63
++E E L+ EEL+ + LE++ KL+ E++++ + + ++ +LE++ +
Sbjct: 750 EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
E +L +E + ++ ++ E ++E++LE K E+ ++L++L+
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869
Query: 124 --LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181
E+E EL + ++K ++ E++ ++++++E + E+ +L++L+V
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Query: 182 EKAKRLLE 189
E + L E
Sbjct: 930 ELEEELEE 937
Score = 32.8 bits (75), Expect = 0.12
Identities = 38/172 (22%), Positives = 90/172 (52%), Gaps = 2/172 (1%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK--QRNFDK 63
K+E E LE +++ LQ ++LE+ ++ + LD + +LE+ + LE++ + +
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
EEKL E+E EL++ K+ ++ EA+ +++E +L+ + KE+ ++L++L+
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
Query: 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 175
E + + E+ ++ K + + E + E+ + ++ +L++
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949
Score = 32.0 bits (73), Expect = 0.19
Identities = 39/201 (19%), Positives = 102/201 (50%), Gaps = 10/201 (4%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
+KE E L+ E EEL+ ++L++ +L+ E++++ ++ R ++ +LE + ++ L
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Query: 66 A--EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
+EK+ ++ EL++ + E +++E++L + E+ + L++
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 123 -----QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 176
+L E+ EL++ +++ + ++ +D++++L+ E+ +L++L
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445
Query: 177 -QVHELEKAKRLLESQLAEQK 196
++ ELE+ L +L E +
Sbjct: 446 EELEELEEQLEELRDRLKELE 466
Score = 32.0 bits (73), Expect = 0.20
Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
++E E LE E EE + D LE+ + L+ + + ++E ++ +LE+K ++
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849
Query: 64 VLA--EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
L E++L E++ EL++ +K K+ E + +++E++L + ++++K
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 174
L+ R E E ER + + E +E +LE + E+ ++ L
Sbjct: 910 LRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Score = 30.8 bits (70), Expect = 0.45
Identities = 40/186 (21%), Positives = 93/186 (50%), Gaps = 10/186 (5%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
L + +++ E LER+ EEL+ LE+ ++LQS L+++ +LE ++ +L+++
Sbjct: 704 LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE- 762
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
EE+L +E L +++ R+ + + +++E++LE + + ++L+
Sbjct: 763 ----LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181
L+ R E ++ ++ E ++E++LE K E+ ++L++L+ +
Sbjct: 819 LEQRRERLE-----QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
Query: 182 EKAKRL 187
E L
Sbjct: 874 ELEDEL 879
Score = 30.1 bits (68), Expect = 0.84
Identities = 53/207 (25%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
QK+E + LE E EL+A +KLE+ K L++EL + LE R ++ +LE++ +
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 64 VLA---------EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 114
LA + +L E+E EL++ ++ ++ E + + +E+ L + E+
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
Query: 115 ALKQLKKLQ--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 172
++ + LQ L E+E EL++ ++ A + E + +EQ++E + E+ ++
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
Query: 173 LK--KLQVHELEKAKRLLESQLAEQKN 197
L + ++ ELEK L+ +L E +
Sbjct: 844 LDELEEELEELEKELEELKEELEELEA 870
Score = 29.3 bits (66), Expect = 1.4
Identities = 47/193 (24%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
K+E LE E E+LQ+ ++LE+ ++L+ EL+++ LE ++ LE+
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL---- 777
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
+E++ E+E + +++ ++ E +E++LE + +E +++++L+
Sbjct: 778 -KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836
Query: 126 EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185
E E + ++ ++ E + E + E ED LK+L++ + ELE+
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL--EDELKELEE-EKEELEEEL 893
Query: 186 RLLESQLAEQKNT 198
R LES+LAE K
Sbjct: 894 RELESELAELKEE 906
Score = 28.5 bits (64), Expect = 2.6
Identities = 42/186 (22%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
++E E E+E EEL++ ++L + ++LQ EL ++ ++E ++ L ++
Sbjct: 259 QEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE--LEN 316
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
E+L E EL ++ + L R E +++EQ L + KE+ L++ L
Sbjct: 317 ELEELEERLEELKEKIEALKEELEER---ETLLEELEQLLAELEEAKEE-LEEKLSALLE 372
Query: 126 EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185
E+E + R++ A A + + +++++++E + E ++L+ L+ E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 186 RLLESQ 191
L E Q
Sbjct: 433 ELEELQ 438
Score = 27.4 bits (61), Expect = 6.0
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+++ E L EEL+ L + L + +L++EL +I +LE + ++ LE++ +
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418
Query: 64 VLA---------EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 114
L E +L E++ EL++ ++ ++ K++E++L + +
Sbjct: 419 RLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478
Query: 115 ALKQLKKLQLREVEAELDDERKQKAAAL 142
K+L L+ R E + Q A+
Sbjct: 479 LEKELSSLEARLDRLEAEQRASQGVRAV 506
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 35.3 bits (82), Expect = 0.016
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 11 VLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70
+L ++E+ L +LE + E E Q+ ++V LE EEK
Sbjct: 143 LLHALQQEVLTLKQQLELQAR----EKAQSQALAEAQQQELVALEGLAAE-----LEEKQ 193
Query: 71 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAE 130
+E+EA+L+ +++ A RK+ K++ Q +L E+ + L QLR+ E
Sbjct: 194 QELEAQLEQLQEKAAETSQERKQK---RKEITDQAAKRLELSEEETRILIDQQLRKAGWE 250
Query: 131 LDDER 135
D +
Sbjct: 251 ADSKT 255
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 35.3 bits (82), Expect = 0.017
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 82 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAA 141
+ + AL +K EA+ K ++Q L E L L K+ + E + ++Q A A
Sbjct: 42 QAQLDALNKQKLLEAEDKLVQQDL-------EQTLALLDKID--RQKEETEQLKQQLAQA 92
Query: 142 LASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNT 198
A ++ +A+ + ++ + E+ + L L + +LE L L + +N
Sbjct: 93 PAKLRQAQAELEALK------DDNDEETRETLSTLSLRQLES---RLAQTLDQLQNA 140
Score = 28.3 bits (64), Expect = 2.8
Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 22/186 (11%)
Query: 13 EREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE 72
+R+KEE + L +L ++ KL+ +LE + + ++ L+ LR+
Sbjct: 76 DRQKEETEQLKQQLAQAPAKLR----QAQAELEALKDDNDEETRET------LSTLSLRQ 125
Query: 73 VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR--EVEAE 130
+E+ L Q A + D + QL E A L R ++
Sbjct: 126 LESRLAQTLDQLQNA-------QNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178
Query: 131 LDDERKQKAAALASRK-KYEADYKDMEQQLEMNNKLKE--DALKQLKKLQVHELEKAKRL 187
L + A S++ +A+ + Q ++ K E L+ L + Q L +
Sbjct: 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238
Query: 188 LESQLA 193
LE QL
Sbjct: 239 LEHQLQ 244
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 34.1 bits (79), Expect = 0.037
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 15 EKEELQAL------NDKLEKSKKKLQSELDDITIDLETQRAKVVD-LEKKQRNFDKVLAE 67
+ EE Q + ++LEK L+ E+D + ++ R KV + +EK QR +
Sbjct: 177 KLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRI-RKKVKEQMEKSQREY---YLR 232
Query: 68 EKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
E+L+ ++ EL ++ K R+K E L++ + KE A K+LKKL+
Sbjct: 233 EQLKAIQKELGEDDDDKDEVEELREKIEK--------LKLPKEAKEKAEKELKKLE 280
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.1 bits (79), Expect = 0.041
Identities = 15/72 (20%), Positives = 38/72 (52%)
Query: 89 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKY 148
+ + + K++E++L+ + E K LKKL + ++R+Q L +++K
Sbjct: 327 VDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL 386
Query: 149 EADYKDMEQQLE 160
+ +++E++L+
Sbjct: 387 SEELEELEEELK 398
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 33.7 bits (78), Expect = 0.057
Identities = 25/130 (19%), Positives = 55/130 (42%)
Query: 22 LNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDER 81
L +L S K+L +L ++ I++++ + V + E ++ + EE E E E
Sbjct: 9 LAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEA 68
Query: 82 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAA 141
+++A A A+ + + E + ED + + R +A+ ++K+
Sbjct: 69 EEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKP 128
Query: 142 LASRKKYEAD 151
+ K +A
Sbjct: 129 KKKKPKRKAA 138
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 33.3 bits (77), Expect = 0.062
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 111 LKEDALKQLKK-LQL----REVEAE-LDDERKQKAAALASRK-------KYEADYKDMEQ 157
L E+ + KK L EV E R + + Y+ Y ++
Sbjct: 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAA 326
Query: 158 QLE--MNNKLKEDALKQLKKLQVHELEKAKR 186
+ E +N +L + L K + + A R
Sbjct: 327 EFERRLNGELPANWAAFLPKFEANGKSIATR 357
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 33.2 bits (77), Expect = 0.075
Identities = 34/143 (23%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 61 FDKVLAEEKLREVEAELD---DERKQKAAALASRKKYEA--DYKDMEQQLEMNNKLKEDA 115
K +AE K++E E E +E K++A A+ EA + + + E + + +
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83
Query: 116 LKQL-KKLQLRE--VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 172
L++L K+L +E ++ +L+ K++ K+ E +++E++ E +L E+ L++
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Query: 173 LKKLQVHELEKAKRLLESQLAEQ 195
L+++ E+AK +L ++ E+
Sbjct: 144 LERISGLTAEEAKEILLEKVEEE 166
Score = 31.7 bits (73), Expect = 0.25
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62
++ + E +KE L +++ K + + + EL + +L+ + L +K+ N D
Sbjct: 43 ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR---LLQKEENLD 99
Query: 63 KVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL-------KEDA 115
+ L E L + E EL+ + K+ +K E + +++ + E +L E+A
Sbjct: 100 RKL--ELLEKREEELEKKEKELEQKQQELEKKEEELEELIE--EQLQELERISGLTAEEA 155
Query: 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYK 153
K++ L +VE E + +AA L K+ E + K
Sbjct: 156 ----KEILLEKVEEEA----RHEAAVLI--KEIEEEAK 183
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 32.7 bits (75), Expect = 0.13
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69
E LER ++EL + +L + + +L ++D E R K+ + + Q + L +
Sbjct: 600 EKLERLEKELNDIATELFGTDENDAPKL---SLDYEKLRKKLNEEMRLQAAGLRALRKG- 655
Query: 70 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 106
R V+ + L K+Y D E L
Sbjct: 656 -RVVQIKDGLAALFWGRLLKLTKRYTTKLTDHELYLA 691
Score = 27.7 bits (62), Expect = 4.6
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 12/118 (10%)
Query: 52 VDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASR---------KKYEADYKDME 102
+ +R+F + L E+ +L+ +++ +A+ K DY+ +
Sbjct: 577 TAEDLLERSFAQFQNSRSLPEIVEKLE-RLEKELNDIATELFGTDENDAPKLSLDYEKLR 635
Query: 103 QQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
++L +L+ L+ L+K R V+ + L K+Y D E L
Sbjct: 636 KKLNEEMRLQAAGLRALRKG--RVVQIKDGLAALFWGRLLKLTKRYTTKLTDHELYLA 691
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 32.7 bits (75), Expect = 0.13
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 15 EKEELQA------LNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEE 68
EK+ELQ + +L+K+ + L+ EL+ + + + + +EK QR + E
Sbjct: 174 EKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREY---YLRE 230
Query: 69 KLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLRE 126
+L+ ++ EL E+ K ++K E L++ ++K+ K+L KL L E
Sbjct: 231 QLKAIKKELGIEKDDKDELEKLKEKLEE--------LKLPEEVKKVIEKELTKLSLLE 280
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.2 bits (74), Expect = 0.15
Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ + E E+ ER E LQ L +L + ++ L +++ + E K +L K++N D
Sbjct: 64 RAELERELKERRNE-LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLD- 121
Query: 64 VLAEEKLREVEAELDDERKQ--KAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
EK E+E + ++R++ + + L EA +E E+ + + +A K +K+
Sbjct: 122 ----EKEEELEELIAEQREELERISGLTQE---EAKEILLE---EVEEEARHEAAKLIKE 171
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADY 152
+ E EA+ + ++K K + ++Y D+
Sbjct: 172 I---EEEAKEEADKKAKEILATAIQRYAGDH 199
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 32.1 bits (73), Expect = 0.17
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 95 EADYKDMEQQLEMNNKLKEDAL-KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYK 153
E D + ++EM+ K+ + L + EV+ E D+ R++ L K+ D K
Sbjct: 276 EGDRPKSKTEIEMDGKMVNSHVDNFLDGALVLEVK-EFDEARREMIRILKELKQKHPD-K 333
Query: 154 DMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL 188
D+EQ EM N L + +K + +A RL+
Sbjct: 334 DLEQLEEMAN---YQVLSRQQKSRAFYRIQATRLM 365
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 32.1 bits (73), Expect = 0.18
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 34/142 (23%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
K RE L+A KLE++K + +EL +RA DK L
Sbjct: 210 KTAAAAAAREAAPLKASLRKLERAKARADAEL---------KRA------------DKAL 248
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
A K E +A +ER+QKAA A + QL+ K DA +
Sbjct: 249 AAAKTDEAKARA-EERQQKAAQQA---------AEAATQLD---TAKADAEAKRAAAAAT 295
Query: 126 EVEAELDDERKQKAAALASRKK 147
+ A+ +K + A A+ K
Sbjct: 296 KEAAKAAAAKKAETAKAATDAK 317
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 31.8 bits (73), Expect = 0.25
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 24/181 (13%)
Query: 27 EKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAA 86
++K ++E + R LE++ K E + ++ + K A
Sbjct: 440 AIEQEKKKAEEAKARFEARQAR-----LERE-----KAAREARHKKAAEARAAKDKDAVA 489
Query: 87 ALASR---KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAEL-----DDERKQK 138
A +R KK A + + + A ++ +K Q R +AE D +K
Sbjct: 490 AALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAA 549
Query: 139 -AAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197
AAA+A K K QQ +E K+ KAK+ + + +
Sbjct: 550 VAAAIARAKA-----KKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPE 604
Query: 198 T 198
Sbjct: 605 E 605
Score = 29.1 bits (66), Expect = 1.5
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 28 KSKKKLQSELDDITIDLETQRAKVVDLEK---KQRNFDKVLAEEKLREVEAELDDERKQK 84
K+KK Q + + + V K + + A + E AE+D ++
Sbjct: 558 KAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAV 617
Query: 85 AAALASRKKYEADYKDMEQQLEMNNKLKEDALK----------QLKKLQLREVEAEL--- 131
AAA+A K +A EQQ + D K + +K ++ AE
Sbjct: 618 AAAIARAKAKKA-----EQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEA 672
Query: 132 DDERKQKAAALASRKK 147
+D +K AA +R K
Sbjct: 673 EDPKKAAVAAAIARAK 688
Score = 28.0 bits (63), Expect = 4.2
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 27/191 (14%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ + E E RE +A + K K + + L + +V + +
Sbjct: 459 QARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSA 518
Query: 64 VLAEEKLR----------EVEAELDDERKQKAAALASR---KKYEADYKDMEQQLEMNNK 110
V+A + R + A D +K AA +R KK + E + E++ K
Sbjct: 519 VIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPK 578
Query: 111 L----KEDALKQLKKLQLREVEAELD------DERKQKAAALASRKKYEADYKDMEQQLE 160
A + KK + AE + D +K AA +R A K EQQ
Sbjct: 579 KAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIAR----AKAKKAEQQAN 634
Query: 161 MNNKLKEDALK 171
+ D K
Sbjct: 635 AEPEEPVDPRK 645
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 31.4 bits (72), Expect = 0.27
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 22 LNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK---------LRE 72
+ K+EK KL ++D+ + + V EK D E K LRE
Sbjct: 384 IEPKVEKKLDKLGLSIEDVFLHGLELLKEKVLEEKANSEIDIDFEEAKAELEAQFKRLRE 443
Query: 73 VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLK-EDALKQLKKLQ 123
A++D + A A+ K + +E++L + K E+ L+Q +LQ
Sbjct: 444 EAAKIDPS--LEGALEANEAKILKQLEFLEKRLLKAQRRKHEELLRQFDRLQ 493
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.5 bits (72), Expect = 0.28
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 8 ENEVLEREKE---ELQALNDKL--EKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62
+ E+LE+E E Q ++DK E+ + KL ++L+ + A V + R
Sbjct: 671 QAELLEQEARGRLERQKMHDKAKAEEQRTKL--------LELQAESAAVE-SSGQSRAEA 721
Query: 63 KVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
AE +L E EAE++ +A AL + E + Q+LE+ + ++ L+ K
Sbjct: 722 LAEAEARLIEAEAEVEQAE-LRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKAK 780
Query: 123 QLREVEAE 130
+L ++EA
Sbjct: 781 ELADIEAT 788
Score = 27.7 bits (62), Expect = 5.5
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 81 RKQKAAA--LASRKKYEADYKDMEQQLEMNNKLK-EDALKQLKKLQLR--EVEAELDDER 135
+ Q+AAA A + EA + +E+Q M++K K E+ +L +LQ VE+
Sbjct: 662 KSQEAAARHQAELLEQEARGR-LERQK-MHDKAKAEEQRTKLLELQAESAAVESSGQSRA 719
Query: 136 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ 195
+ A A A + EA+ + E + + E L++L+K Q ELE + E ++A+
Sbjct: 720 EALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKA 779
Query: 196 K 196
K
Sbjct: 780 K 780
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.4 bits (71), Expect = 0.31
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
K + L++E + LQ + + +K+K + + + L+++ V+ EK+ L
Sbjct: 447 KSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQ-------L 499
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
AEEK R+ E E + + A A ASR++ K +Q LEM K E LK LK+ + R
Sbjct: 500 AEEKKRKKEEE-ETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLK-LKEEECR 557
Query: 126 EVEAELDDERKQK 138
+E E + RK +
Sbjct: 558 MLEKEAQELRKYQ 570
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 31.2 bits (71), Expect = 0.39
Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+Q++ E R +++L+ L D+L++++ +L EL L R+++ LE ++ F+
Sbjct: 282 EQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFED 341
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
E+ +++ L R + A ++D++++ E + +K+ +
Sbjct: 342 ADIEQLQADLDQ-LPSIRSELEEVEARLDALTGKHQDVQRKYER----LKQKIKEQLERD 396
Query: 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183
L + L R++K A E D + +E QL + + + + L +
Sbjct: 397 LEKNNERLAAIREEKDRQKA---AIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGR 453
Query: 184 AKRLLES 190
K+ L+S
Sbjct: 454 LKQRLDS 460
Score = 29.7 bits (67), Expect = 1.1
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 27/209 (12%)
Query: 3 FKQKKENEVLEREKEELQALNDKLEKS----KKKLQSELDDITID---LETQRAKVVDLE 55
KQ + + L+R + E Q+L DKLE + K++ +++L + L Q+ ++
Sbjct: 651 LKQARLD--LQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEAL 708
Query: 56 KKQRNFDKVLAEEKLREVEAELDDERKQ-KAAALASRKKYEADYKDMEQQLEMNNKLK-- 112
K + K + VE ELD++ Q AA A+R + +A K++++Q + +L
Sbjct: 709 KDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQ--YDRELASL 766
Query: 113 ---EDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
+ +K+LK+ Q+ E+E ++ ++ R + + + E L
Sbjct: 767 DVDPNTVKELKR-QIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAI-- 823
Query: 170 LKQLKKLQVHELEKAKRLLESQLAEQKNT 198
Q+ ELE + L+ +L
Sbjct: 824 -------QLRELESSAEELQQELTRLIKD 845
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 30.8 bits (70), Expect = 0.46
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV--LAEEKLREVE 74
E+ +A E + L+++L + A+ DL++ Q ++ LA+ + E
Sbjct: 94 EQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ--DLDQAQNELERRAELAQRGVVSRE 151
Query: 75 AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDE 134
ELD R AA A+ +A K Q L + A Q+ + +A+LD E
Sbjct: 152 -ELDRARAALQAAEAALAAAQAAQK---QNLALLESEVSGAQAQVASAEAALDQAKLDLE 207
Query: 135 R 135
R
Sbjct: 208 R 208
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 0.48
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 1 MLFKQKKENEVLEREKEELQALNDKLEKSKK------KLQSELDDITIDLETQRAKVVDL 54
+L + E E+E++ + KLE L SELD++ + E ++ +L
Sbjct: 30 LLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEEL 89
Query: 55 EKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKK--YEADYKDMEQQLEMNNKLK 112
EK+ + D L E + + + E ++ + + L R E + + +E Q E +
Sbjct: 90 EKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYS---- 145
Query: 113 EDALKQLKKLQ 123
L QL KL+
Sbjct: 146 ---LNQLDKLR 153
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.0 bits (70), Expect = 0.49
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 52 VDLEKKQRNFDKVLAEEKLREVE--AELDDERKQKAAAL----ASRKKYEADYKDMEQQL 105
++ + +F+ L EEK RE+E A+ + ER+++A + EAD + ++
Sbjct: 237 IEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEV 296
Query: 106 EMNNKLKEDALKQ 118
E + ++ LK+
Sbjct: 297 EKRREKLQNLLKK 309
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 30.6 bits (70), Expect = 0.52
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAE 76
E+ Q + ++LEK KL ++ ++V L K D L EE+L E++
Sbjct: 257 EDYQTIRNELEKYSPKL------------AEKPRIVVLNKI----DLPLDEEELEELKKA 300
Query: 77 LDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERK 136
L + + L S E + + E+ + K +A + EVE DDE +
Sbjct: 301 LAEALGWEVFYLISALTREGLDELLRALAELLEETKAEAEAAEAEELPVEVEVLYDDEHE 360
Query: 137 QKA 139
Sbjct: 361 DFE 363
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 30.8 bits (70), Expect = 0.53
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 45 ETQRAKVVDLEKKQRNFDKVL-AEEKLREVEAELDD---ERKQKAAALASRKKYEADYKD 100
+ R + +EK+ R + AE +LR+ E ER+++A A R ++ +D
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 101 MEQQLEMNNKLKEDALKQLKKLQLREVEAELDDE 134
+++L++ ++AL L REV AE +E
Sbjct: 579 DDRELDLAVADLQEALYGLN----REVRAEYKEE 608
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 30.6 bits (70), Expect = 0.58
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELD 38
+++ LE + +L+A N+KLE+ ++L+SEL+
Sbjct: 14 EEQIRQLELKLRDLEAENEKLERELERLKSELE 46
Score = 27.1 bits (61), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQR 48
++ N LE + +L+ LE +KL+ EL+ + +LE +
Sbjct: 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 29.6 bits (67), Expect = 0.75
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEK-----KQRNFDKV 64
L++E ELQ +L++ +LQ E ++ +L T A++ L+K KQ + + +
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI 128
Query: 65 LAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQ 103
+E+ RE+ EL E KQ+ AL + + + +
Sbjct: 129 ELDEENRELREEL-AELKQENEALEAENERLQENEQRRW 166
Score = 28.8 bits (65), Expect = 1.3
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ +++ L++E +EL+ LE ++LQ EL I + A +D E ++ +
Sbjct: 84 ELQEQLAELQQENQELKQELSTLEAELERLQKELA--RIKQLSANAIELDEENRELREEL 141
Query: 64 VLAEEKLREVEAELDDERKQK 84
+++ +EAE + ++ +
Sbjct: 142 AELKQENEALEAENERLQENE 162
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.3 bits (68), Expect = 0.80
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 92 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEAD 151
+K +++E++ + K KE LK+LK Q +E +A+L ++ + + + ++
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQ-KEAKAKLQAQQASDGTNVPKKSEKKSR 67
Query: 152 YKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197
+D+E + + + Q K+ L SQ+A+Q +
Sbjct: 68 KRDVEDENPEDFIDPDTPFGQ------------KKRLSSQMAKQYS 101
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 29.6 bits (67), Expect = 0.87
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 2 LFKQKKENEVLEREKEELQALNDK---LEKSKKKLQSELDDI-TIDLETQRAKVVD 53
LF ++ENE L++E EL++ + LE +L+ L+ ++D + A+V+
Sbjct: 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDYQFITARVIS 126
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 30.0 bits (68), Expect = 0.89
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 12 LEREKEELQALNDKLE-KSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL 70
LE + ++L+ D LE ++LQS+L+++ +L + ++ LEK + ++
Sbjct: 173 LEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLEKLLEDLERSEESSDR 232
Query: 71 RE-VEAELDDERKQKAAALASRKKYEADYKDM----EQQLEMNNKLKEDALKQLKKLQLR 125
+ E + + AS + +D+ + QL+ NN L+ LK + + LR
Sbjct: 233 SSSTDTESSIADSLSSLSNASSDESVSDFHNRFVVHNMQLKWNNSLRNILLKYIHFVSLR 292
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 29.7 bits (67), Expect = 1.1
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV--E 74
E L DKL++ L+ +++ +E + L+K+ + +A++K+ E+ +
Sbjct: 701 EYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQKIDELKDK 760
Query: 75 AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 113
AE + K + D KDM+ M ++LK
Sbjct: 761 AETINGVKVLVEVV--------DAKDMKSLKTMADRLKS 791
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.6 bits (67), Expect = 1.3
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 4 KQKKENEVLERE-----KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV--VDLEK 56
K+K+ ++ E+L + LE+ ++ + E+ + QR K
Sbjct: 1114 KEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEI------AKEQRLKSKTKGKAS 1167
Query: 57 KQRNFDKVLAEEKLREVEAELDDERKQKAAALASRK--KYEADYKDMEQQLEMNNKLKED 114
K R E+K ++ A+ + + K + D K ++ + +ED
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
Query: 115 ALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
+Q K + V+ + ++ + + D +
Sbjct: 1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKN 1273
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 28.9 bits (65), Expect = 1.7
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELD 78
L+ L + L + K+L+ +D + + D +E++ +++AE+D
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDA-----------LKEEIDKLDAEID 49
Query: 79 DERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERK 136
+ A E + + A + LR + L +ERK
Sbjct: 50 RLEELLDELEAKPA------ASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERK 101
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.9 bits (65), Expect = 1.9
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
++ E L+ E+L L ++LE+ +K L + ++ + ++ +
Sbjct: 87 VQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPE---QA 143
Query: 66 AEEKLREVEAELDDERKQKAAALASRKKYEAD 97
+ L+ ++AEL++E+ Q+ + EA+
Sbjct: 144 RKLLLKLLDAELEEEKAQRVKKIEEEADLEAE 175
Score = 28.1 bits (63), Expect = 3.3
Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
L K+++ + ER +E Q ++ ++ EL + + Q A+ + E+ QR
Sbjct: 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREE 83
Query: 62 DKVLAEEKLREVEAE-LDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA---LK 117
++++ +E+ + AE LD+ Q + E + +++E+QL+ N+L A +
Sbjct: 84 ERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLD--NELYRVAGLTPE 141
Query: 118 QLKKLQLREVEAELDDERKQKAAALASRKKYEAD 151
Q +KL L+ ++AEL++E+ Q+ + EA+
Sbjct: 142 QARKLLLKLLDAELEEEKAQRVKKIEEEADLEAE 175
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 28.9 bits (65), Expect = 2.1
Identities = 38/200 (19%), Positives = 79/200 (39%), Gaps = 13/200 (6%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+Q+ + LE++ + L+ LE + +L + + A++ LE ++R +
Sbjct: 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR 115
Query: 64 VLAE------EKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALK 117
LAE R L + ++ Y A ++++ LK LK
Sbjct: 116 RLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERID---ALKAT-LK 171
Query: 118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
QL ++ E+ AE + + A + K ++ ++ L N K+L++L+
Sbjct: 172 QLAAVR-AEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230
Query: 178 VHE--LEKAKRLLESQLAEQ 195
+E L+ E+ A+
Sbjct: 231 ANESRLKNEIASAEAAAAKA 250
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 28.6 bits (64), Expect = 2.4
Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 23/173 (13%)
Query: 29 SKKKLQSELDDITIDLETQRA----------KVVDLEKKQRNFDKVLAEEKLREVEAELD 78
+ Q + L TQ + + + A + +
Sbjct: 229 DAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQ 288
Query: 79 DERKQKAAALASRKKYEADYKDM-------EQQLEMNNKLKEDALKQLKKLQLREV---- 127
D R+Q A + E QL + L+Q+ E+
Sbjct: 289 DLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLE 348
Query: 128 --EAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
EA L+ E Q L+ K + +++E++ E L E L++ ++L +
Sbjct: 349 QQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSI 401
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 28.7 bits (64), Expect = 2.4
Identities = 15/121 (12%), Positives = 43/121 (35%)
Query: 48 RAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM 107
+ + E+K + ++ ++ +E + ++ + S K D ++ ++
Sbjct: 378 KKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDL 437
Query: 108 NNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
++ D L K L ++ E L +++ K + +Y + E
Sbjct: 438 PDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDE 497
Query: 168 D 168
+
Sbjct: 498 E 498
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 28.7 bits (65), Expect = 2.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLE 45
+++KEN+ E + + L LN++ ++ KK LDD+ D E
Sbjct: 604 EREKEND--EDDAKRLARLNERFKREGKKPLKSLDDLPKDYE 643
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 2.6
Identities = 30/167 (17%), Positives = 71/167 (42%), Gaps = 4/167 (2%)
Query: 29 SKKKLQSELDDITID-LETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAA 87
K L + D+ D + ++ E ++ + L+E E++ D +R Q+
Sbjct: 161 KKNILSGNVSDVDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKE 220
Query: 88 LASRKKYEADYKDMEQQLEMNN--KLKEDALKQLKKLQLREVEAELDDERKQKAAALASR 145
+K+ +AD + +N K +++ ++ ++ + A+ ++ K A +
Sbjct: 221 ELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQK 280
Query: 146 KKYEADYKDMEQQLEMNNKLKEDALKQLKK-LQVHELEKAKRLLESQ 191
++ E ++++ E K K+ LK+ + E E + LE+Q
Sbjct: 281 REIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQ 327
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 28.5 bits (64), Expect = 2.7
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 1 MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDD---ITIDLETQRAKVVDLEKK 57
+ + ++EN L+RE EEL+ +KLE ++ + E+ D ++ + ++ LEK+
Sbjct: 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489
Query: 58 QRNFDKVLAEEKLREVEAELDDERKQKAAALASR----KKYEADYKDMEQQLEMNNKLKE 113
++++ E+E +L + RK + L+ + K E + ++ E +KE
Sbjct: 490 LEE-----KKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKE 544
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.6 bits (64), Expect = 2.8
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 89 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKY 148
A K+ E + +E+ L+ KLK++ +++++L+ RE +L+ E++ + A A +K+
Sbjct: 522 ALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581
Query: 149 EADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK 185
E + ++L+ K +K ++ L + K K
Sbjct: 582 E----SIIRELKEKKIHKAKEIKSIEDLVKLKETKQK 614
Score = 28.2 bits (63), Expect = 3.3
Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 3/172 (1%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQ---SELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ KEE+ L +KL +K+L+ L+ + + E + ++ ++ + ++
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
E +E + L +K+ + + K+ + + +E KLKE K +K
Sbjct: 561 NKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPT 620
Query: 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 175
+ + D R + + K M K+ L+++ K
Sbjct: 621 NFQADKIGDKVRIRYFGQKGKIVQILGGNKWNVTVGGMRMKVHGSELEKINK 672
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.5 bits (64), Expect = 2.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66
+ EV+ ++EL++L +LE +K+ EL + LE ++A D+ K + LA
Sbjct: 233 ELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKAL-GDVLSKLARTEYTLA 291
Query: 67 EE 68
E
Sbjct: 292 IE 293
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 28.4 bits (63), Expect = 3.1
Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 7 KENEVLEREKEELQALNDKLEKSKK-----------------KLQSELDDITIDLETQRA 49
K+ + E K+E++ +N + SKK L + + L Q+
Sbjct: 68 KQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQK 127
Query: 50 KVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNN 109
++ L+ +K +A + R +E + A + R+ + + + +QLE
Sbjct: 128 EIQRLQYAISTLNKSMAAQ-ARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLERTK 186
Query: 110 KLKEDALKQLKKLQLREVEAE 130
K+ + L + Q + +A
Sbjct: 187 KVADALTYVLDEAQQKLSQAL 207
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 28.1 bits (63), Expect = 3.6
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 53 DLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLK 112
D + + N D V K R + ++D E K AL +K + + E Q + N K
Sbjct: 3 DRKLLRNNPDLVKESLKARGLSVDIDLE---KLIALDDERK-KLLSEIEELQAKRNELSK 58
Query: 113 E-DALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
+ K KK ++ E++ EL + +++ + A K +E +L+
Sbjct: 59 QIGKAKGQKKDKIEEIKKELKELKEE-------LTELSAALKALEAELQ 100
Score = 26.9 bits (60), Expect = 8.5
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
K ++ + E+L AL+D+ KKL SE++++ + +K + K Q+
Sbjct: 17 SLKARGLSVDIDLEKLIALDDER----KKLLSEIEELQAK-RNELSKQIGKAKGQKKDKI 71
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 106
+++L+E++ EL + A K +E +L+
Sbjct: 72 EEIKKELKELKEEL--------------TELSAALKALEAELQ 100
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 28.0 bits (63), Expect = 3.6
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 22 LNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDER 81
+ ++EK K Q + DI +E + + ++ +Q + E + ++
Sbjct: 375 IEPRVEKLLDKYQLSVADIFTGVEGLKERFLE---RQDPEP---IDALFEEAKEQITAAH 428
Query: 82 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQ 137
K LA A ++ E N ++ L+K LR + + D E +Q
Sbjct: 429 KPLREELA------AVDPTLQGLAEKNLAKITKQVEFLEKRLLRAIRRKHDVELQQ 478
>gnl|CDD|234850 PRK00861, PRK00861, putative lipid kinase; Reviewed.
Length = 300
Score = 27.7 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 115 ALKQLKKLQLREVEAELDDERKQ-KAAA 141
L+QL++L+ EVE E +D+ A A
Sbjct: 163 GLQQLRELESFEVEIETEDQIITTNAVA 190
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 28.1 bits (63), Expect = 3.7
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 49 AKVVDLEKKQRNFD----------KVLAEEKLREVEAELDDERKQKAAALASRKKYEADY 98
+ V L KK ++ ++ ++E A+ + E + AA KKY
Sbjct: 263 DEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYK--KKYPELA 320
Query: 99 KDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRK 146
+ ++ ++ +L D K+L E K K ALA+RK
Sbjct: 321 AEFTRR--LSGELPADWDKKL-------------PEFKAKLQALATRK 353
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 28.1 bits (63), Expect = 4.1
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 100 DMEQQLEMNNKLKEDALKQLKKLQLREVEAE 130
D+E LE L + L L++L +
Sbjct: 888 DLENALETGEILSLEELTDLRELIHALFKNP 918
Score = 28.1 bits (63), Expect = 4.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 154 DMEQQLEMNNKLKEDALKQLKKL 176
D+E LE L + L L++L
Sbjct: 888 DLENALETGEILSLEELTDLREL 910
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 27.7 bits (62), Expect = 4.1
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
+K L E E L+A N++L+K ++ + ++ + ETQ + E +Q ++
Sbjct: 72 RKRLAKLISENEALKAENERLQKREQSIDQQIQQ-AVQSETQE---LTKEIEQLKSERQQ 127
Query: 66 AEEKLREVEAELDD 79
+ + +++ L
Sbjct: 128 LQGLIDQLQRRLAG 141
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the
C-terminal region of the CASP family of proteins. It is
a Golgi membrane protein which is thought to have a
role in vesicle transport.
Length = 245
Score = 27.4 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDD 39
+ +KE L + EE Q LN KLE +Q E+ +
Sbjct: 3 ELQKELSSLNAKLEEQQELNAKLENDLATVQDEISN 38
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
component of ABC (ATPase Binding Cassette)-type
transport systems that are predicted to be involved in
uptake of amino acids. This subgroup includes the type
I periplasmic binding component of ABC (ATPase Binding
Cassette)-type transport systems that are predicted to
be involved in uptake of amino acids. Members of this
subgroup are sequence-similar to members of the family
of ABC-type hydrophobic amino acid transporters (HAAT),
such as leucine-isoleucine-valine-binding protein
(LIVBP); their ligand specificity has not been
determined experimentally, however.
Length = 312
Score = 27.5 bits (62), Expect = 4.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 73 VEAELDDERKQKAAALASRKKYEADYKD 100
V +L D QK AL K YEA Y
Sbjct: 248 VADQLPDSDPQKKVALDFVKAYEAKYGA 275
Score = 27.5 bits (62), Expect = 4.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 127 VEAELDDERKQKAAALASRKKYEADYKD 154
V +L D QK AL K YEA Y
Sbjct: 248 VADQLPDSDPQKKVALDFVKAYEAKYGA 275
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 105
++A E+ R + R A L +R Y E L
Sbjct: 457 IVAPERARPLLDAHRRLRDAGFAPLLARPAPRGLYMLYEAYL 498
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 27.7 bits (62), Expect = 5.6
Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEE 68
+E + E+L+ L DK E +K EL+ I + +D+E+ + + + EE
Sbjct: 277 DEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEAL--EE 334
Query: 69 KLREVEAELDDERKQKAAAL------ASRKKYEADYKDMEQQLEMNNKL-------KEDA 115
L + +L+++ K + ++ + + + + +N+ K A
Sbjct: 335 ILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKA 394
Query: 116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 175
K+L + E++ ++D +K+K + E + K +E ++ K E +K+L+K
Sbjct: 395 KKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEI----KALEKEIKELEK 450
Query: 176 LQVHELEKAKRL 187
+ A +
Sbjct: 451 QLTNIEPTADEI 462
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQS---ELDDITIDLETQRAKVVDLEKKQR 59
K+K ++ KE++ A + + +K + S E+ + +++ ++ +LEK+
Sbjct: 394 AKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLT 453
Query: 60 N 60
N
Sbjct: 454 N 454
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 27.3 bits (61), Expect = 5.6
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 102 EQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASR-------KKYEADYKD 154
E Q E K K+L+KL+ +E + + + E+ +KA + K D
Sbjct: 552 ELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETG 611
Query: 155 MEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNT 198
+ ++ + K+L K E +K +L E LA+ +
Sbjct: 612 LPTHDADGEEISKKERKKLSK----EYDKQAKLHEEYLAKGGKS 651
>gnl|CDD|227612 COG5293, COG5293, Predicted ATPase [General function prediction
only].
Length = 591
Score = 27.6 bits (61), Expect = 6.1
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 10 EVLEREKEELQALNDKLEKSKKK-LQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEE 68
++++ E + A N + + + LQ E+ +I DL+ A++ DL K++ L
Sbjct: 316 GQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR 375
Query: 69 KLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVE 128
+ E L +E LA + + + + LK + L ++E
Sbjct: 376 GVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECL---------DLE 426
Query: 129 AELDDERKQKAAALASRKKY 148
+ E +Q+ + AS +
Sbjct: 427 ERIYTEVQQQCSLFASIGRL 446
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 280
Score = 27.1 bits (60), Expect = 6.2
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 43 DLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRK-KYEADYKDM 101
+ ET+R K V +K K+L +K+ E E E + A LA K K +A+Y
Sbjct: 188 EAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAKADAEYYTA 247
Query: 102 EQQLEMNNKLKEDALKQLKKLQ 123
+++ E N +L K +
Sbjct: 248 QKEAEANKLKLTPEYLELMKYE 269
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 27.3 bits (61), Expect = 6.3
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK 57
++E E+ ++ E+++ +LE+ ++ L E ++ LE + K+ DLEK+
Sbjct: 312 NEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKR 364
Score = 26.5 bits (59), Expect = 9.8
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 3 FKQKKENEVLER-EKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K+ EN + E E+L L + E S K++ R + E K++
Sbjct: 275 LKETTENLLYENYRTEKLSGLKNSGEPSLKEIHEA-----------RLNEEERELKKKFT 323
Query: 62 DKVLAEEK-LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 113
+K+ +EK L E+E L +ERK+ + L ++ + +D+E++LE K
Sbjct: 324 EKIREKEKRLEELEQNLIEERKELNSKL---EEIQKKLEDLEKRLEKLKSNKS 373
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.1 bits (60), Expect = 6.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 55 EKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKK 93
EK + K +K R E E++ E +Q+ AA +R +
Sbjct: 339 EKNEAKARKKEIAQKRRAAEREINREARQERAAAMARAR 377
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 27.0 bits (59), Expect = 6.7
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 24 DKLEKSKK--KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEA 75
D ++K+ K +L +++D +T +E L + R FD VL+ E + V
Sbjct: 160 DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVAN 213
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 27.1 bits (61), Expect = 6.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITID----LETQRAKVVDLEKKQRNF 61
+ + E +E + E +K+ + E +ITID +E + A+V++ EK +
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAEKVE-KS 567
Query: 62 DKVL------AEEKLREV 73
DK+L EE+ R++
Sbjct: 568 DKLLKLQVDLGEEEPRQI 585
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer membrane
[Transport and binding proteins, Unknown substrate].
Length = 322
Score = 26.9 bits (60), Expect = 7.0
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 62 DKVLAEEKLREVEAELDDERKQKA--AALASRKKYEADYKDMEQQLEMNNKLKEDALKQL 119
KV + L A LDD+ Q A AALA EA + ++ E +L +
Sbjct: 46 QKVKKGQVL----ARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNA--- 98
Query: 120 KKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
+A+LDD + AA A + +A + L
Sbjct: 99 ------VSQADLDDAKAAVEAAQADLEAAKASLASAQLNLR 133
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 26.9 bits (60), Expect = 7.7
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 66 AEEKLREVEAELDDERK--QKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
A+E+L ++ +L + + ++ A ++K E +E++L + KE AL++ +L+
Sbjct: 168 AKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLE 227
Query: 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK 183
+ EL RKKYE + + Q+LE + E LK LQ EL++
Sbjct: 228 FEREKEEL-------------RKKYE---EKLRQELERQAEAHEQKLKNELALQAIELQR 271
Query: 184 A-KRLLESQLAEQKN 197
+ ++ ++ E++N
Sbjct: 272 EFNKEIKEKVEEERN 286
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 26.9 bits (60), Expect = 8.1
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 111 LKEDALKQLKKLQLREVE---AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
L+ L++ + R VE A+L + A +A R++ EA + + +L KL
Sbjct: 324 LRLAELQEARAELERRVEERTADLTRANARLQAEIAEREQAEAALRRAQDELVQAGKLA- 382
Query: 168 DALKQLKKLQVHEL-----------EKAKRLLE 189
AL Q+ HEL + A+ LLE
Sbjct: 383 -ALGQMSAGIAHELNQPLAAIRTYADNARLLLE 414
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 26.9 bits (60), Expect = 8.4
Identities = 38/197 (19%), Positives = 89/197 (45%), Gaps = 10/197 (5%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
+E E L + ++L+ ++L + +L+SEL++ +E +R ++ +LE++ +
Sbjct: 341 NEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
Query: 66 --AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
A L E L++ R+++ + EA + +++E L E
Sbjct: 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQP 460
Query: 124 LREVE--AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181
+ ++++R++ A + E + +++E++LE L E ++ L
Sbjct: 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE------DRIERL 514
Query: 182 EKAKRLLESQLAEQKNT 198
E+ + LE +AE++ T
Sbjct: 515 EERREDLEELIAERRET 531
>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
Staphylococcus aureus plasmid proteins with no
characterized function.
Length = 229
Score = 26.5 bits (58), Expect = 8.5
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD--LEKKQRNFDK 63
KK+N+++ + E++ D EK K ++SEL + T D + + K+ + ++ Q
Sbjct: 48 KKQNKLIIKYIAEIKENQDIREKELKAIKSELKEATEDFQDKGKKIHNDFVDLLQEKLKH 107
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 105
V AE+ E+ ++ R++ L K+ Y+ ++QL
Sbjct: 108 VDAEDIEDELGKDIYGVREEIDRMLQEVKQSHEHYQKRQKQL 149
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 26.6 bits (59), Expect = 8.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 153 KDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189
+ +E L K++ DA+K++ +L V ++A+ LE
Sbjct: 43 RYIEGALAELEKMENDAMKKVVELAVPRRDEAESTLE 79
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.0 bits (59), Expect = 9.0
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 22/159 (13%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK 69
+++E E EEL+ L + K + Q D +E + + D EK + E++
Sbjct: 557 KLMESEFEELKKKWSSLAQLKSRFQK--DATLDSIEGEEELIQDDEK----GNFEDLEDE 610
Query: 70 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEA 129
+ E+++ R +++ + + AD D E + E N + KE+ E+E
Sbjct: 611 ENSSDNEMEESR---GSSVTAENEESADEVDYETEREENARKKEELRGNF------ELEE 661
Query: 130 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 168
D E+K Y + + +E+QL++N E
Sbjct: 662 RGDPEKKDV-------DWYTEEKRKIEEQLKINRSEFET 693
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 26.3 bits (58), Expect = 9.2
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET 46
+KENE L+ + E LQ N++LEK +KL+ L I D +T
Sbjct: 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 26.6 bits (59), Expect = 9.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA 184
+V A+L+++RK++AAA YK + + + ++ AL +L K V L+K
Sbjct: 149 ADVVAKLEEKRKERAAAY---------YKKKVKLRKAWKEARKKALAKLPKAIVAVLKKF 199
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.5 bits (59), Expect = 9.4
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 6/120 (5%)
Query: 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV----EA 75
L + K++ + D ++ + KK L E K +EV E
Sbjct: 59 SELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEE 118
Query: 76 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDER 135
+ R +K + + E+ + + + + +L + L ++ DE
Sbjct: 119 IAEMMRDEKVPIRELEEIPPEF--VALYKQEIQSPTRLNLINELLRAGLELEILDMKDES 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.123 0.302
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,179,107
Number of extensions: 1034998
Number of successful extensions: 4669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3362
Number of HSP's successfully gapped: 1296
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.5 bits)