RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17852
(200 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 72.9 bits (179), Expect = 2e-15
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 4 KQKKENEV--LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K + ++ +E + ++ N+KL K +K L+ + D+T +L + K +L K +
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
E + E+E L E K + ++K E + D+ +Q+ + QL K
Sbjct: 1038 -----ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 122 LQ--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179
+ L+ A L+DE QK AL ++ E+ D+++ LE + A KQ + L
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS-E 1151
Query: 180 ELEKAKRLLESQLAEQK 196
ELE K LE L
Sbjct: 1152 ELEALKTELEDTLDTTA 1168
Score = 64.9 bits (158), Expect = 1e-12
Identities = 33/198 (16%), Positives = 82/198 (41%), Gaps = 21/198 (10%)
Query: 2 LFKQKKENEVLEREKEELQ--------------ALNDKLEKSKKKLQSELDDITIDLETQ 47
+ + +N L +E++ L+ L K K K +S + ++ + L+ +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 48 RAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM 107
+LEK +R E + ++ ++ + + Q A A K E + + +LE
Sbjct: 1052 EKSRQELEKIKRKL-----EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 108 NNKLKEDALKQLKKLQLR--EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
K +ALK++++L+ +++ +L+ E+ + A ++ + + ++ +LE
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Query: 166 KEDALKQLKKLQVHELEK 183
+ + +K
Sbjct: 1167 TATQQELRGSDYKDDDDK 1184
Score = 64.9 bits (158), Expect = 1e-12
Identities = 37/191 (19%), Positives = 93/191 (48%), Gaps = 5/191 (2%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ + E + ++++ +L+ ++ E +++KLQ E ++ ++ +E + K
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 64 V--LAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
L EE++ ++ L +E ++ + K+E+ ++E +L+ K +++ K +K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 122 L--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179
L + ++ ++ + + Q A A K E + + +LE K +ALK++++L+
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE-S 1123
Query: 180 ELEKAKRLLES 190
+ + LES
Sbjct: 1124 HISDLQEDLES 1134
Score = 62.2 bits (151), Expect = 1e-11
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 12 LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLR 71
+E EE + + +L+ KKK+Q ++ D+ LE + A L+ +KV A+ K++
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL-----EKVTADGKIK 986
Query: 72 EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QLREVEA 129
++E ++ Q RK E D+ L + ++ K K + E+E
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Query: 130 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189
L E K + ++K E + D+ +Q+ + QL K + EL+ A LE
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE-EELQAALARLE 1105
Query: 190 SQLAEQKN 197
+ +++ N
Sbjct: 1106 DETSQKNN 1113
Score = 54.8 bits (132), Expect = 4e-09
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 12/199 (6%)
Query: 1 MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRN 60
L + K+ + E E +EL+ + +L + K LQ +L ET+ + + +
Sbjct: 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA-----ETELYAEAEEMRVRLA 919
Query: 61 FDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 120
K EE L E+EA +++E ++ A +KK + D+E+QLE ++ +
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 121 KL--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
+++++E ++ Q RK E D+ L +E+ K L KL+
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA----EEEEKAKNLTKLK- 1034
Query: 179 HELEKAKRLLESQLAEQKN 197
++ E LE +L +++
Sbjct: 1035 NKHESMISELEVRLKKEEK 1053
Score = 44.8 bits (106), Expect = 8e-06
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 1 MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRN 60
L K+++E + E+ + + K ++L+S + D+ DLE+++A EK++R+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 61 FDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKD 100
E+L ++ EL+D A R D D
Sbjct: 1149 L-----SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 39.4 bits (92), Expect = 5e-04
Identities = 19/136 (13%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 67 EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QL 124
+E+L+ + + + + ++++L+ +L +A + +L +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--VHELE 182
+E+E L + + ++ +A+ K M+QQ+ + E+ +KLQ +
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 183 KAKRLLESQLAEQKNT 198
+ +E + ++
Sbjct: 983 GKIKKMEDDILIMEDQ 998
Score = 30.2 bits (68), Expect = 0.44
Identities = 16/123 (13%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 75 AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDE 134
++E + K L K+ + + ++LE + + L++ +L+ +
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE-KLQAETELYAEA 911
Query: 135 RKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE 194
+ + A +++ E +ME ++E ++ + +L+ K+ ++ Q+ +
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEE------------EEERSQQLQAEKKKMQQQMLD 959
Query: 195 QKN 197
+
Sbjct: 960 LEE 962
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 64.4 bits (157), Expect = 2e-12
Identities = 36/195 (18%), Positives = 75/195 (38%), Gaps = 24/195 (12%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
L K K E +ER K+ L+ LE +LQ ++D+ + ++ K+ +LE
Sbjct: 906 LKKLKIEARSVERYKK----LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---- 957
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
EKLR L ++ A + + + ++L K+ + K
Sbjct: 958 -YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181
+ E E + + ++Q ++ + E N+ D K++ + +L
Sbjct: 1017 YK-HETEQLVSELKEQN--------------TLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Query: 182 EKAKRLLESQLAEQK 196
+ + LE L +++
Sbjct: 1062 VEETKQLELDLNDER 1076
Score = 57.4 bits (139), Expect = 4e-10
Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 7/161 (4%)
Query: 4 KQKKENEV--LEREKEELQALNDKLEKSKKKLQSELDDITIDLET--QRAKVVDLEKKQR 59
EN++ L+R+ +E L + L+ T L + +R ++ + E K
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982
Query: 60 NFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQL 119
+ +E++ ++ EL + +K KY+ + + + +L+ N L + ++L
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042
Query: 120 KKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
+ ++ + E+ + ++K K+ E D D + +
Sbjct: 1043 NR-RIHDQAKEITETMEKKLV--EETKQLELDLNDERLRYQ 1080
Score = 55.5 bits (134), Expect = 2e-09
Identities = 28/214 (13%), Positives = 66/214 (30%), Gaps = 24/214 (11%)
Query: 1 MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDIT--IDLETQRAKVVDLEKKQ 58
M +L + E +Q + + +V L+
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 59 RNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 118
R +KL+ ++ +K E ++++++ NK + L++
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLH-------IGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 119 LKKLQ---------LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
+ L+ LR L ++ A + + + ++L K+
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 170 LKQLKKLQ------VHELEKAKRLLESQLAEQKN 197
+ K + V EL++ LL+++ E
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 51.6 bits (124), Expect = 4e-08
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 15/189 (7%)
Query: 3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62
+ K + ++ +K Q + + I+L+ Q+ V L+K R
Sbjct: 837 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 896
Query: 63 KVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
K+ + V ++ A A K EA + + +N L QL +L
Sbjct: 897 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 956
Query: 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182
V + ++K A + ++ E K L +L++LQ ++E
Sbjct: 957 NYNGVP----ELTERKDTFFAQQWT------GVKSSAE---TYKNTLLAELERLQ--KIE 1001
Query: 183 KAKRLLESQ 191
Sbjct: 1002 DLHHHHHHH 1010
Score = 26.2 bits (58), Expect = 9.8
Identities = 13/134 (9%), Positives = 44/134 (32%), Gaps = 10/134 (7%)
Query: 73 VEAELDDERKQKAAALASR----------KKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
A +++ R+Q+ + ++ ++ D + + + + ++
Sbjct: 750 QLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHK 809
Query: 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182
+ ++ E + + A+ + + + E + + L+ E E
Sbjct: 810 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE 869
Query: 183 KAKRLLESQLAEQK 196
A+ L ++K
Sbjct: 870 HAEALRIELKRQKK 883
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-07
Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 39/205 (19%)
Query: 1 MLFKQKKENEVLEREKEELQALNDK--LEKSKKKLQSELDDITIDLETQRAKVVDLEKK- 57
+++ +++V + L+ +EK K+ + I ++L+ + L +
Sbjct: 394 LIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 58 --QRNFDKVLAEEKLREVEAELDD-------------ERKQKAAALASRKKYEADYKDME 102
N K + L + LD E ++ R + D++ +E
Sbjct: 450 VDHYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVF-LDFRFLE 504
Query: 103 QQLEMNNKLKE------DALKQLKKLQLREVEAELDDERKQKA----AALASRKKYEADY 152
Q++ ++ + L+QLK + + + ER A + Y
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 153 KDMEQQLEM--NNKLKEDALKQLKK 175
D+ + M + + E+A KQ+++
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 40.2 bits (93), Expect = 2e-04
Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 63/235 (26%)
Query: 1 MLFKQKKENE---VLE--REKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55
L K K VL + + A N K L + +T L + L+
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 56 KKQRNFDKVLAEEKLRE-VEAELDDERKQK-----------AAAL---ASRKKY--EADY 98
+ L + ++ D ++ A ++ + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 99 KDMEQQLEMN-NKLKEDALKQL---------------KKLQL-------REVEAELDDER 135
+ +E + N L+ +++ L L +V ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 136 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190
K +L ++ E+ LE+ KL+ + +H + +++
Sbjct: 413 KY---SLVEKQPKESTISIPSIYLELKVKLENEY-------ALH-----RSIVDH 452
Score = 26.7 bits (58), Expect = 5.9
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 152 YKDMEQQLE------MNNKLKEDALKQ-LKKLQV-------HELEKAKRLLESQLAEQKN 197
YKD+ E + K +D K L K ++ + RL + L++Q+
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 198 T 198
Sbjct: 78 M 78
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 47.2 bits (112), Expect = 1e-06
Identities = 20/175 (11%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 11 VLEREKEELQALNDKLEKSKKKL---QSELDDITIDLETQRAKVVDLEKKQRNFDKVL-- 65
++ ++++L+ L KKL ++++ D+ + L + +L+ K ++ L
Sbjct: 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN---RELDVKNEQANQKLKQ 1963
Query: 66 -------AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE----- 113
AE K ++ + + K AD + E + ++++
Sbjct: 1964 MVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAA 2023
Query: 114 -DALKQLKKLQ--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
+ + ++ + +E + +++ A + ++ + + ++ +++ + L
Sbjct: 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 3/99 (3%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ +QA LE + QS DL + A+ L + N
Sbjct: 898 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ---LTELNYNGVP 954
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDME 102
L E K + + + + +E
Sbjct: 955 ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 34.3 bits (79), Expect = 0.021
Identities = 19/142 (13%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 36 ELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYE 95
++D T+ + + + + + ++ + + ++ A+ E + ++ +Y+
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179
Query: 96 ADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDM 155
+Y+++++++E +K +++K +++ EL + L + Y +
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRI-----HGELKTYKSPGLEVLFQGPRGS-RYDEA 233
Query: 156 EQQLEMNNKLKEDALKQLKKLQ 177
E + E+ N E + KK+
Sbjct: 234 EGRFEVINNETEQLKAEEKKIL 255
Score = 33.5 bits (77), Expect = 0.039
Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 5/131 (3%)
Query: 8 ENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67
+ + + +++ + + ++ E+ + +EK ++ + +
Sbjct: 143 KAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATE--SI 200
Query: 68 EKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREV 127
+ R + EL + L + Y + E + E+ N E + KK +
Sbjct: 201 KNRRRIHGELKTYKSPGLEVLFQGPRGS-RYDEAEGRFEVINNETEQLKAEEKK--ILNQ 257
Query: 128 EAELDDERKQK 138
++ +RK+
Sbjct: 258 FLKIKKKRKEL 268
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 34.1 bits (77), Expect = 0.024
Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 5/159 (3%)
Query: 20 QALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDD 79
+ + ++ L+ L D+ ++ K+ +E Q +FD K + +L+
Sbjct: 5 HPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNG 64
Query: 80 ERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDD-ERKQK 138
+ ++ E ++Q L ++ +Q + EL D +R+Q+
Sbjct: 65 NNQSVTRQK--MQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQ 122
Query: 139 AAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
A + D +E + + + +Q+KKL+
Sbjct: 123 IACIGGPPNICLD--RLENWITSLAESQLQTRQQIKKLE 159
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene,
replication block, mutagenesis, transferase/electron
transport/DNA complex; HET: DNA 2DT 8FG; 2.10A
{Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB:
1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A*
1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A*
1zyq_A* 2ajq_A*
Length = 698
Score = 34.1 bits (78), Expect = 0.026
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%)
Query: 41 TIDLETQRAKVVDL-EKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYK 99
+D+E + A ++ E+ FD EE E+ A + ++ S + + +
Sbjct: 207 AVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTE 266
Query: 100 DMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASR 145
K +K K + + ++ L +R
Sbjct: 267 MFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTR 312
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.9 bits (74), Expect = 0.071
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 4/162 (2%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
Q+ + + E+ + +K + ++E + + V+ + +
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
AE E E + + K KA ALA + E + +++E+ + L+ K Q
Sbjct: 728 SRAEAARIEGEGSV-LQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
L VEA+ + K+ AL + E Q+++ L
Sbjct: 787 LANVEAK---KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSL 825
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 31.0 bits (71), Expect = 0.25
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 68 EKLREVEAELDDERKQKAAALASRKKYE--ADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
L+E+E +LD+ RK+K AA+ S +++E A +D EQ+L + + + K+ + +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQS-QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
Query: 126 EVEAE 130
EV +
Sbjct: 453 EVTVD 457
Score = 26.8 bits (60), Expect = 6.3
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 123 QLREVEAELDDERKQKAAALASRKKYE--ADYKDMEQQLEMNNKLKEDALKQLKKLQVHE 180
L+E+E +LD+ RK+K AA+ S +++E A +D EQ+L + + + K+ + + E
Sbjct: 395 NLKELEQKLDEVRKEKDAAVQS-QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.26
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 14/38 (36%)
Query: 117 KQ-LKKLQLREVEAEL----DDERKQKAAALASRKKYE 149
KQ LKKL +A L DD A ALA + E
Sbjct: 19 KQALKKL-----QASLKLYADDS----APALAIKATME 47
Score = 27.6 bits (60), Expect = 1.9
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 15/29 (51%)
Query: 15 EKEELQALNDKLEKSKKKLQSEL----DD 39
EK+ L KKLQ+ L DD
Sbjct: 18 EKQAL-----------KKLQASLKLYADD 35
Score = 26.5 bits (57), Expect = 4.8
Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 82 KQKAAALASR-KKYEAD 97
KQ L + K Y D
Sbjct: 19 KQALKKLQASLKLYADD 35
Score = 26.5 bits (57), Expect = 4.8
Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 136 KQKAAALASR-KKYEAD 151
KQ L + K Y D
Sbjct: 19 KQALKKLQASLKLYADD 35
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 29.6 bits (67), Expect = 0.58
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
D AE +++EVEA L A R++ EA+ K +L + + +
Sbjct: 63 DPEQAENQIKEVEATL-------MELRAQRQQAEAELKLARVTYSRQQRLAQTQA--VSQ 113
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
L E+ ++ Q A K+ +A + L+
Sbjct: 114 QDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLD 152
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 29.6 bits (66), Expect = 0.58
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 QKKENEVLEREKEELQALN---DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
+K N V+E+ E+ + ++E + L+ ++D IDL + A+++ + Q
Sbjct: 49 NRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTI 108
Query: 62 D 62
D
Sbjct: 109 D 109
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 29.7 bits (66), Expect = 0.76
Identities = 15/84 (17%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 5 QKKENEVLEREKEELQALN---DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K N V+E+ + +A+ LE+ + L +++D +D+ T A+++ L + +R
Sbjct: 389 TNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTL 448
Query: 62 DKVLAEEKLREVEAELDDERKQKA 85
D + ++ + ++ + +
Sbjct: 449 D--FHDSNVKNLYDKVRMQLRDNV 470
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 29.2 bits (66), Expect = 0.76
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 36 ELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDD---------------E 80
E++ + ++ + L + D +E+L EV AEL+ E
Sbjct: 3 EINPVNNRIQDLTERSDVL---RGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKE 59
Query: 81 RKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDD 133
R A + + + + +D+ LE+ + ++ +L +E +L
Sbjct: 60 RSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQ 112
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.4 bits (66), Expect = 0.80
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 62 DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
D L +A L A+ A + Y + +KL
Sbjct: 64 DSTTQINTLNTRKAAL-------ASYQAQLVARKTAYDVALSNYQRLSKLYGQKA--TSL 114
Query: 122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
L +A L++ + + + K+ E + E L
Sbjct: 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 0.88
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 42 IDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDD----ERKQK 84
+D +T+ V D + K + +L +R +E EL + E+K+
Sbjct: 877 VDSKTKEP-VDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEM 922
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 29.4 bits (67), Expect = 0.88
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 19 LQALNDKLEKSKKKLQSELDDITIDLETQR------AKVVDLEKKQRNFDKVLAEEKLRE 72
++ + EK K+L + + L + +VV+ E+ + E+
Sbjct: 798 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLK----ENLEQAER 853
Query: 73 VEAELDD 79
+ L
Sbjct: 854 IREALSQ 860
Score = 26.0 bits (58), Expect = 9.9
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 10 EVLEREKEELQALNDKLEKSKKKLQS 35
EV+E E+ L+ ++ E+ ++ L
Sbjct: 835 EVVEAEEARLKENLEQAERIREALSQ 860
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 29.2 bits (66), Expect = 1.0
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 160 EMNNKLKEDA-LKQLKKL--QVHELEKAKRLLESQLAEQ 195
++ A ++ L +L ++ LEK + LE+ +
Sbjct: 336 PYQEIHRQVAKVRNLPRLEERIAALEKLVQKLEALSEQH 374
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 29.2 bits (65), Expect = 1.0
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 5 QKKENEVLEREKEELQALN---DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K N V+E+ E+ + ++E + L+ ++D IDL + A+++ + Q
Sbjct: 370 NGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTI 429
Query: 62 DKVLAEEKLREVEAELDDERKQKA 85
D L + ++ ++ + + ++ A
Sbjct: 430 D--LTDSEMNKLFEKTRRQLRENA 451
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.6 bits (63), Expect = 1.4
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64
QKKE E+ + + ++ +L++++K+L + D + + ++ K LE K+++ D
Sbjct: 336 QKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK---LEDKKKSLDDE 392
Query: 65 LAEEKLREVEAELDDERKQKAAALASRKK 93
+ K R+ AEL + +A + K+
Sbjct: 393 VNAFKQRKTAAELLQSQGSQAGGSQTLKR 421
Score = 27.4 bits (60), Expect = 3.3
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 103 QQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL--- 159
+LE D + LQ + + + R+ + K+ E +L
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 160 EMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN 197
E K D LK+L + + +LE K+ L+ ++ K
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQ 398
Score = 26.6 bits (58), Expect = 6.8
Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Query: 46 TQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 105
+ + + + + +E E E ++K + R+ + K+ E +L
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEM--RQMFVQRVKEKEAEL 357
Query: 106 EMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
+ K + +LKK ++ + +L+D++K + + K+ + + ++ Q
Sbjct: 358 KEAEKELHEKFDRLKK-LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 166 KEDALKQLKK 175
+ + KK
Sbjct: 417 QTLKRDKEKK 426
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.3 bits (64), Expect = 1.6
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 101 MEQQLEMNNKLKEDALKQLKKLQLR--EVEAELDD---------------ERKQKAAALA 143
M ++ + QL+ ++ R E+ L D E +A
Sbjct: 1 MGSDKIHHHHHHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVA 60
Query: 144 SRKKYEADYKDMEQQLEMNNKLKEDA-LKQLKKLQVHELEKAKRLLESQL 192
++Y+ +++ EM D L+++ K ++ + AK E +L
Sbjct: 61 VYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKL 110
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 28.2 bits (63), Expect = 1.7
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 12 LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67
+ E + +A + S + LQ + + + KV LE + + K +
Sbjct: 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQ 57
Score = 26.7 bits (59), Expect = 6.0
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 18 ELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE 67
++ K E S S + + + K+V+L++K + E
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 27.8 bits (62), Expect = 2.1
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 78 DDERKQKAAALASRKKYEADYKD 100
E Q+ AA S ++ +
Sbjct: 194 TPE--QEKAAKESLERQQKLLNR 214
Score = 27.8 bits (62), Expect = 2.1
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 132 DDERKQKAAALASRKKYEADYKD 154
E Q+ AA S ++ +
Sbjct: 194 TPE--QEKAAKESLERQQKLLNR 214
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 27.7 bits (61), Expect = 2.1
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 5 QKKENEVLEREKEELQALN---DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K N V+E+ + A+ + LE+ + L ++DD +D+ T A+++ L + +R
Sbjct: 49 TNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTL 108
Query: 62 D 62
D
Sbjct: 109 D 109
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP:
d.227.1.2
Length = 150
Score = 27.3 bits (60), Expect = 2.4
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 30 KKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALA 89
K K+ ++ D I++E +R E+ R F KV + + + E ++ +KA L+
Sbjct: 72 KMKVIDQMKDFRIEIEYERT-----EEHPRIFTKVHLKYIFK-FDGEPPKDKVEKAVQLS 125
Query: 90 SRK 92
K
Sbjct: 126 QEK 128
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.8 bits (62), Expect = 2.5
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 45 ETQRAKVVDLEKKQRNFDKVLA-EEKLREVEAELDD---ERKQKAAALASRKKYEADYKD 100
ETQ + D D+++ + + R D+ + + + + K + D
Sbjct: 21 ETQEKRFKDPG----LVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGD 76
Query: 101 ME---QQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALA 143
E + + + L DAL LK Q+++V +D+ + A
Sbjct: 77 DESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERI 122
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.9 bits (63), Expect = 2.6
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 68 EKLREVEAELDDERKQKAAALASRKKYE--ADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
L+E+E +LD+ RK+K AA+ S +++E A +D EQ+L + + + K+ + +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQS-QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
Query: 126 EVEAE 130
EV +
Sbjct: 453 EVTVD 457
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 2.6
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD-----LEKKQRNF 61
+ + + +RE E ++ N EK+ + + + I+ R K V + N
Sbjct: 16 RGSHMFKRE-EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Query: 62 DKVLAEEKLREVE-AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 120
+ E + DER + + L ++ + Q++
Sbjct: 75 RQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 121 KLQLR--EVEAELDDERKQKAAALASRKKYEADYKDM 155
KL ++ E + L + +
Sbjct: 135 KLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA 171
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 27.4 bits (61), Expect = 2.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 2 LFKQKKENEVLEREKEELQALNDKLEKSK---KKLQSELD--DITIDLETQRAKVV 52
L EN+ L+ EEL L ++ K K L+ LD D D + A V+
Sbjct: 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYDPLNASVI 76
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 27.6 bits (61), Expect = 3.2
Identities = 18/157 (11%), Positives = 45/157 (28%), Gaps = 9/157 (5%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD-----LEKKQRNF 61
+ + + +RE E ++ N EK+ + + + I+ R K V + N
Sbjct: 16 RGSHMFKRE-EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Query: 62 DKVLAEEKLREVE-AELDDERKQKAAALASRKKY--EADYKDMEQQLEMNNKLKEDALKQ 118
+ E + DER Y + ++ ++ + +
Sbjct: 75 RQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 119 LKKLQLREVEAELDDERKQKAAALASRKKYEADYKDM 155
+++ E + L + +
Sbjct: 135 KLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA 171
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 27.3 bits (60), Expect = 3.4
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 31 KKLQSELDDITIDLETQRAKVVD-LEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALA 89
+++Q L+DIT L+ K +D +E+ R + L + K + A + +K +
Sbjct: 51 REVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGK-SIIVAGFAESKKDHGNEMI 109
Query: 90 SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYE 149
+ + DM + +E ++ ++ + K++ E D +
Sbjct: 110 EKLEAGMQ--DMLKIVE--DRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMP 165
Query: 150 ADYKDMEQQLEMNNK 164
+++ K
Sbjct: 166 LLKGRASVDMKVKIK 180
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 27.1 bits (61), Expect = 4.6
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 58 QRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLK-EDAL 116
+ + A+E E E D K K L D+ ++ K +A+
Sbjct: 233 IIDLAEHAAKEP-FAFEPEDTDAIKAKMKDLV--------GADIAAAYKIQKKQDRYEAV 283
Query: 117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDME 156
KK + A L + K A +K++E
Sbjct: 284 GAAKK----KAIAALGLSDENPTG--YDPLKLGAIFKELE 317
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 26.9 bits (59), Expect = 4.9
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD-----LEKKQRNF 61
+ + + +RE E ++ N EK+ + + + I+ R K V + N
Sbjct: 16 RGSHMFKRE-EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Query: 62 DKVLAEEKLREVE-AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 120
+ E + DER + + L ++ + Q++
Sbjct: 75 RQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 121 KLQLR--EVEAELDDERKQKAAALASRKKYEADYKDM 155
KL ++ E + L + +
Sbjct: 135 KLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA 171
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.7 bits (59), Expect = 5.3
Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 4/137 (2%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ KE LE+EKE+L + L+K ++ + + L + FD
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 64 VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 123
+ +L + E+ + + E + +L + +++ +
Sbjct: 255 PYSFVELTKDF-EVRVHAPNGVLTIDNLSGGEQIAVALSLRLAI---ANALIGNRVECII 310
Query: 124 LREVEAELDDERKQKAA 140
L E LD+ R+ K A
Sbjct: 311 LDEPTVYLDENRRAKLA 327
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 26.7 bits (58), Expect = 5.5
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
QK E E + ++LQ+ K+++ K + L DLE + A + ++++F +
Sbjct: 24 AQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLF----DLEQKLASGAENPGEKKSFSE 79
Query: 64 VLAEEKLREVEAELDDERKQKAAA 87
AEE ++ + + +
Sbjct: 80 RAAEELIKSWDGKQGTFGAKTFNK 103
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 26.8 bits (59), Expect = 5.8
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 67 EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--L 124
+ KL+E+E E +E + ++K+ + +++ + + + KQ L +
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 172
L +E Q + +K + E + + K DALK
Sbjct: 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKN 203
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 26.8 bits (60), Expect = 6.0
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 106 EMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKD 154
M LK + + L K+Q+R E + E++++ A + + ++D
Sbjct: 805 AMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQD 853
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.5 bits (59), Expect = 6.3
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 12 LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLR 71
L + L+ + + ++ + L D+ + + Q + ++ R +L K
Sbjct: 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL-YPKEA 140
Query: 72 EVEAELDD 79
++E +
Sbjct: 141 QLEEQFYL 148
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 26.4 bits (58), Expect = 6.6
Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 5/165 (3%)
Query: 28 KSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAA 87
K K+ ++ + + + +L + F + + L + + L+D+
Sbjct: 2 KKSKRKNAQAQEAQETEVLVQEEAEELPE----FPEGEPDPDLEDPDLALEDDLLDLPEE 57
Query: 88 LASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKK 147
E + ++ ++ ++ L ++ ++ L +E E++ RK + A +K
Sbjct: 58 GEGLDLEEEEEDLPIPKISTSDPVR-QYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKL 116
Query: 148 YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL 192
E D + E+ + + + E K + E
Sbjct: 117 SEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQ 161
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 26.2 bits (57), Expect = 6.7
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 5 QKKENEVLEREKEELQALN---DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
K N + E E + LQ L+ D+L +L ++DD+ D + + ++ L +
Sbjct: 49 TKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISSQIELAVLLSNEGII 108
Query: 62 D 62
+
Sbjct: 109 N 109
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 26.5 bits (57), Expect = 7.1
Identities = 18/177 (10%), Positives = 62/177 (35%), Gaps = 3/177 (1%)
Query: 4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
+ + + + LN + + + ++ L++ + + +++K++ +
Sbjct: 518 CYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLEN 577
Query: 64 VLAEEKLREVEAELDDERKQKAAAL--ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
L L + S + + Y + +++ + K +E LK ++
Sbjct: 578 DLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQV 637
Query: 122 LQLREVEA-ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
+ + ++E + L + ++ ++ L+ K + + L + Q
Sbjct: 638 SHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQ 694
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 26.5 bits (58), Expect = 7.7
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVD-----LEKKQRNF 61
+ + + +RE E ++ N EK+ + + + I+ R K V + N
Sbjct: 16 RGSHMFKRE-EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Query: 62 DKVLAEEKLREVE-AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 120
+ E + DER + + L ++ + Q++
Sbjct: 75 RQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 121 KLQLR--EVEAELDDERKQKAAALASRKKYEADYKDM 155
KL ++ E + L + +
Sbjct: 135 KLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA 171
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 26.0 bits (58), Expect = 9.7
Identities = 3/27 (11%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 169 ALKQLKKLQVHELEKAKRLLESQLAEQ 195
L Q+ + ++++ L
Sbjct: 163 DLSSGG-YQLDVVAPCEQVMPGLLHPA 188
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.1 bits (56), Expect = 9.8
Identities = 30/181 (16%), Positives = 63/181 (34%)
Query: 16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEA 75
K+ +L +K + + + + R + ++V A +
Sbjct: 374 KDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGY 433
Query: 76 ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDER 135
L ++ Q + + + Q + +K L E E E++ ER
Sbjct: 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 493
Query: 136 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ 195
+ +A AS K + EQ +E + ++ LKQL + ++ + + E LA +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 196 K 196
Sbjct: 554 L 554
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.123 0.302
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,903,679
Number of extensions: 181587
Number of successful extensions: 1401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 475
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (24.9 bits)