RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17852
         (200 letters)



>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
           module {Pseudomonas putida [TaxId: 303]}
          Length = 407

 Score = 25.6 bits (55), Expect = 4.9
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 101 MEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDM 155
           ++Q L       E+  +        E EA +   +K+          +      M
Sbjct: 338 LKQHLIKIGHWSEEEHQATTA----EFEAAVIAAQKEAEQYGTLANGHIPSAASM 388


>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis
           [TaxId: 1423]}
          Length = 324

 Score = 25.5 bits (55), Expect = 5.7
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 110 KLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKY 148
            L     +++    ++ V  E  DER  +A +  +  K 
Sbjct: 4   DLFSTVQEKVAGKDVKIVFPEGLDERILEAVSKLAGNKV 42


>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 157

 Score = 24.6 bits (53), Expect = 7.2
 Identities = 7/47 (14%), Positives = 18/47 (38%)

Query: 17 EELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
            L+   DK+     K   E+   ++  ++  + V +  +    F +
Sbjct: 9  VVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSE 55


>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD
           {Escherichia coli [TaxId: 562]}
          Length = 329

 Score = 24.7 bits (53), Expect = 8.3
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 109 NKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKY 148
            + +E AL+   ++    V  +  D+R  KAA    ++  
Sbjct: 10  ERCRELALRAPARV----VFPDALDQRVLKAAQYLHQQGL 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.123    0.302 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 677,202
Number of extensions: 33429
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 105
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.2 bits)