BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17854
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 76/79 (96%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 217 GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRA 276
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDERTFHIFY ++AG
Sbjct: 277 IRQAKDERTFHIFYYLIAG 295
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/79 (89%), Positives = 75/79 (94%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLLEKSRA
Sbjct: 187 GELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRA 246
Query: 162 IRQAKDERTFHIFYQILAG 180
IRQAKDE +FHIFYQ+L G
Sbjct: 247 IRQAKDECSFHIFYQLLGG 265
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE-IGELEQ 106
VDY A +WLMKNMDPLN+NV +LL S D A IWKD E I LEQ
Sbjct: 558 VDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQ 604
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 220 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 279
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 280 VFQSETERNYHIFYQLLAG 298
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 588 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 629
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 220 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 279
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 280 VFQSETERNYHIFYQLLAG 298
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 588 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 629
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 208 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 267
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 268 VFQSETERNYHIFYQLLAG 286
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 576 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 617
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 220 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 279
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 280 VFQSETERNYHIFYQLLAG 298
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 588 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 629
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 220 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 279
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 280 VFQSETERNYHIFYQLLAG 298
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 588 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 629
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 71/79 (89%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+N+SRFGKFI I F+++G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 68/80 (85%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++QANP LEAFGNAKTV+NDNSSRFGKFIRI+F A+G +A A+IETYLLEKSR
Sbjct: 214 GTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRV 273
Query: 162 IRQAKDERTFHIFYQILAGR 181
I Q K ER +HIFYQIL+ +
Sbjct: 274 IFQLKAERDYHIFYQILSNK 293
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVS 87
VDY+ WL KN DPLNE VV L Q S
Sbjct: 586 VDYNIIGWLQKNKDPLNETVVGLYQKS 612
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q+ ER +HIFYQ+LAG
Sbjct: 269 VFQSTSERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q+ ER +HIFYQ+LAG
Sbjct: 269 VFQSTTERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q+ ER +HIFYQ+LAG
Sbjct: 269 VFQSTTERNYHIFYQLLAG 287
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 69/79 (87%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSS FGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 209 GVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRV 268
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 269 VFQSETERNYHIFYQLLAG 287
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIG 102
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 618
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++ ANP+LEAFGNAKTV+NDNSSRFGKFIRI+F A+G +A A+IETYLLEKSR
Sbjct: 213 GTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRV 272
Query: 162 IRQAKDERTFHIFYQILAGR 181
Q ER++HIFYQI++ +
Sbjct: 273 TFQLPAERSYHIFYQIMSNK 292
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVS 87
VDY+ WL KN DPLNE V+ L Q S
Sbjct: 585 VDYNISGWLEKNKDPLNETVIGLYQKS 611
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 209 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 268
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 269 KSRVTYQQSAERNYHIFYQICS 290
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 36 GPSLLFVTPGSPV-----PVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P P L V YS WL KN DP+NENVV+LL S++P
Sbjct: 557 GKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEP 616
Query: 91 FVAHIWKDAE 100
VA ++K E
Sbjct: 617 LVAELFKAPE 626
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 209 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 268
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 269 KSRVTYQQSAERNYHIFYQICS 290
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 36 GPSLLFVTPGSPV-----PVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P P L V YS WL KN DP+NENVV+LL S++P
Sbjct: 557 GKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEP 616
Query: 91 FVAHIWKDAE 100
VA ++K E
Sbjct: 617 LVAELFKAPE 626
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 209 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 268
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 269 KSRVTYQQSAERNYHIFYQICS 290
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 36 GPSLLFVTPGSPV-----PVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P P L V YS WL KN DP+NENVV+LL S++P
Sbjct: 557 GKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEP 616
Query: 91 FVAHIWKDAE 100
VA ++K E
Sbjct: 617 LVAELFKAPE 626
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 205 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 264
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 265 KSRVTYQQSAERNYHIFYQICS 286
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 36 GPSLLFVTPGSPV-----PVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P P L V YS WL KN DP+NENVV+LL S++P
Sbjct: 553 GKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEP 612
Query: 91 FVAHIWKDAE 100
VA ++K E
Sbjct: 613 LVAELFKAPE 622
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 204 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 263
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 264 KSRVTYQQSAERNYHIFYQICS 285
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 36 GPSLLFVTPGSPV-----PVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P P L V YS WL KN DP+NENVV+LL S++P
Sbjct: 552 GKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEP 611
Query: 91 FVAHIWKDAE 100
VA ++K E
Sbjct: 612 LVAELFKAPE 621
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 211 DQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 270
Query: 158 KSRAIRQAKDERTFHIFYQILA 179
KSR Q ER +HIFYQI +
Sbjct: 271 KSRVTYQQSAERNYHIFYQICS 292
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 36 GPSLLFVTPGSPVPVLKG-----LKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P +G L V YS WL KN DP+NENVVSLL VS++P
Sbjct: 559 GKNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEP 618
Query: 91 FVAHIWK 97
VA +++
Sbjct: 619 LVAELFR 625
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%)
Query: 104 LEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIR 163
LE Q+++ANP+LEAFGNAKTV+N+NSSRFGKFIRI+F +G IAGA+IETYLLEKSR
Sbjct: 216 LEDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTY 275
Query: 164 QAKDERTFHIFYQILA 179
Q ER +HIFYQI +
Sbjct: 276 QQSAERNYHIFYQICS 291
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 36 GPSLLFVTPGSPVPVLKG-----LKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 90
G + +F PG P +G L V YS WL KN DP+NENVVSLL VS++P
Sbjct: 558 GKNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEP 617
Query: 91 FVAHIWK 97
VA +++
Sbjct: 618 LVAELFR 624
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++Q NP+LEA+GNAKT +N+NSSRFGKFIRI+F G IAGA+IETYLLEKSR
Sbjct: 218 GTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGADIETYLLEKSRV 277
Query: 162 IRQAKDERTFHIFYQILA 179
Q ER +HIFYQ+L+
Sbjct: 278 TYQQSAERNYHIFYQLLS 295
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEI 101
V YS WL KN DP+NENVV LLQ S++P V ++ I
Sbjct: 589 VSYSIAGWLDKNKDPINENVVELLQNSKEPIVKMLFTPPRI 629
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 63/78 (80%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++ ANP+LEAFGNA TV+NDNSSRFG FIRI+F A+G +A A+IETYLLE SR
Sbjct: 216 GTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRV 275
Query: 162 IRQAKDERTFHIFYQILA 179
Q ER++HIFYQI++
Sbjct: 276 TFQLPAERSYHIFYQIMS 293
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVS 87
VDY+ WL N DPLNE V+ L Q S
Sbjct: 588 VDYNISGWLEXNXDPLNETVIGLYQXS 614
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 63/78 (80%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++ ANP+LEAFGNA TV+NDNSSRFG FIRI+F A+G +A A+IETYLLE SR
Sbjct: 213 GTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRV 272
Query: 162 IRQAKDERTFHIFYQILA 179
Q ER++HIFYQI++
Sbjct: 273 TFQLPAERSYHIFYQIMS 290
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVS 87
VDY+ WL N DPLNE V+ L Q S
Sbjct: 585 VDYNISGWLEXNXDPLNETVIGLYQXS 611
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 179 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 238
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 239 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 268
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 179 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 238
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 239 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 268
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 179 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 238
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 239 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 268
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 177 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 236
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 237 VQGKEERNYHIFYRLCAG 254
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 186 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 245
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 246 VQGKEERNYHIFYRLCAG 263
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 177 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 236
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 237 VQGKEERNYHIFYRLCAG 254
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 176 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 235
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 236 VQGKEERNYHIFYRLCAG 253
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 176 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 235
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 236 VQGKEERNYHIFYRLCAG 253
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 173 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 232
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 233 VQGKEERNYHIFYRLCAG 250
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 177 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 236
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 237 VQGKEERNYHIFYRLCAG 254
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 186 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 245
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 246 VQGKEERNYHIFYRLCAG 263
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
+++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 176 DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 235
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 236 VQGKEERNYHIFYRLCAG 253
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 104 LEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIR 163
+ + LL +NP+LEAFGNAKT++NDNSSRFGK++ + F+A G G I YLLEKSR +
Sbjct: 132 ISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVG 191
Query: 164 QAKDERTFHIFYQILAG 180
+ + ER+FHIFYQ+L G
Sbjct: 192 RTQGERSFHIFYQMLKG 208
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 54 LKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIW 96
LK V Y +L KN D L +++S +Q S DP V ++
Sbjct: 505 LKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLF 547
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 104 LEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIR 163
+ + LL +NP+LEAFGNAKT++NDNSSRFGK++ + F+A G G I YLLEKSR +
Sbjct: 132 ISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVG 191
Query: 164 QAKDERTFHIFYQILAG 180
+ + ER+FHIFYQ+L G
Sbjct: 192 RTQGERSFHIFYQMLKG 208
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 54 LKTAIEPVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIW 96
LK V Y +L KN D L +++S +Q S DP V ++
Sbjct: 505 LKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLF 547
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 174 DIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 233
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 234 VQGKEERNYHIFYRLCAG 251
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 176 DIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 235
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 236 VQGKEERNYHIFYRLCAG 253
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 103 ELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAI 162
++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G + YLLEKSR
Sbjct: 176 DIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRIC 235
Query: 163 RQAKDERTFHIFYQILAG 180
Q K+ER +HIFY++ AG
Sbjct: 236 VQGKEERNYHIFYRLCAG 253
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 106 QQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYI 146
Q+LL A P E TVK DN S +G+ +R N D G +
Sbjct: 118 QRLLAAKP--EGGIGLLTVKLDNPSGYGRIVRENGDVVGIV 156
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 106 QQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYI 146
Q+LL A P E TVK DN S +G+ +R N D G +
Sbjct: 115 QRLLAAKP--EGGIGLLTVKLDNPSGYGRIVRENGDVVGIV 153
>pdb|2VXR|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype G
Binding Domain
Length = 482
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 114 ILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIRQ------AKD 167
I++ N++ + NDN R G +I +N D I+ + Y+L S+ I+ D
Sbjct: 335 IIKKASNSRNINNDNIVREGDYIYLNIDN---ISDESYRVYVLVNSKEIQTQLFLAPIND 391
Query: 168 ERTFHIFYQI 177
+ TF+ QI
Sbjct: 392 DPTFYDVLQI 401
>pdb|3MPP|G Chain G, Botulinum Neurotoxin Type G Receptor Binding Domain
Length = 433
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 114 ILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIRQ------AKD 167
I++ N++ + NDN R G +I +N D I+ + Y+L S+ I+ D
Sbjct: 286 IIKKASNSRNINNDNIVREGDYIYLNIDN---ISDESYRVYVLVNSKEIQTQLFLAPIND 342
Query: 168 ERTFHIFYQI 177
+ TF+ QI
Sbjct: 343 DPTFYDVLQI 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,193,608
Number of Sequences: 62578
Number of extensions: 199630
Number of successful extensions: 508
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 117
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)