RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17854
(181 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 188 bits (480), Expect = 2e-56
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 179 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 238
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 239 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 268
Score = 57.3 bits (139), Expect = 3e-10
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAEIGELEQQLLQANPILEAFG 119
V+Y E +L KN D + E + +L+ S+ + +++D E + + +
Sbjct: 557 VEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRT 616
Query: 120 NAKTVKNDNSSRFGK 134
K K +
Sbjct: 617 PVKPAKARPGQTSKE 631
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 184 bits (470), Expect = 2e-55
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
+ + + LL +NP+LEAFGNAKT++NDNSSRFGK++ + F+A G G I YLL
Sbjct: 125 QSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLL 184
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSR + + + ER+FHIFYQ+L G
Sbjct: 185 EKSRVVGRTQGERSFHIFYQMLKG 208
Score = 59.5 bits (145), Expect = 5e-11
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y +L KN D L +++S +Q S DP V ++
Sbjct: 512 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTR 551
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 185 bits (472), Expect = 2e-55
Identities = 57/89 (64%), Positives = 74/89 (83%)
Query: 92 VAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANI 151
VA + G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+++G+I+GA+I
Sbjct: 199 VAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258
Query: 152 ETYLLEKSRAIRQAKDERTFHIFYQILAG 180
++YLLEKSR + Q++ ER +HIFYQ+LAG
Sbjct: 259 QSYLLEKSRVVFQSETERNYHIFYQLLAG 287
Score = 63.0 bits (154), Expect = 3e-12
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIGE 103
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIAS 619
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 187 bits (476), Expect = 2e-55
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 179 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 238
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 239 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 268
Score = 55.9 bits (135), Expect = 8e-10
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAEIGELEQQLLQANPILEAFG 119
V+Y E +L KN D + E + +L+ S+ + +++D E + + +
Sbjct: 557 VEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRT 616
Query: 120 NAKTVKNDNSSRFGK 134
K K +
Sbjct: 617 PVKPAKARPGQTSKE 631
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 184 bits (470), Expect = 4e-55
Identities = 42/90 (46%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
++ + +++ ++++ANP+LEAFGNAKTV+N+NSSRFGKF+ I+F+ + G
Sbjct: 163 YLTESY--GTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGF 220
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ YLLEKSR Q K+ER +HIFY++ AG
Sbjct: 221 VSHYLLEKSRICVQGKEERNYHIFYRLCAG 250
Score = 58.8 bits (143), Expect = 9e-11
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y +++ KN D L+ ++ SL+ S+D F+ +++ +
Sbjct: 582 VCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 621
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 184 bits (470), Expect = 4e-55
Identities = 58/95 (61%), Positives = 71/95 (74%)
Query: 86 VSQDPFVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGY 145
++ + + G LE Q++QANP LEAFGNAKTV+NDNSSRFGKFIRI+F A+G
Sbjct: 198 IAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGK 257
Query: 146 IAGANIETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+A A+IETYLLEKSR I Q K ER +HIFYQIL+
Sbjct: 258 LASADIETYLLEKSRVIFQLKAERDYHIFYQILSN 292
Score = 61.9 bits (151), Expect = 7e-12
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
VDY+ WL KN DPLNE VV L Q S ++ ++ +
Sbjct: 586 VDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYA 625
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 185 bits (471), Expect = 7e-55
Identities = 71/84 (84%), Positives = 76/84 (90%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
+ GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLL
Sbjct: 182 EPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSRAIRQAKDE +FHIFYQ+L G
Sbjct: 242 EKSRAIRQAKDECSFHIFYQLLGG 265
Score = 63.1 bits (154), Expect = 3e-12
Identities = 27/72 (37%), Positives = 35/72 (48%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIGELEQQLLQANPILEAFGN 120
VDY A +WLMKNMDPLN+NV +LL S D A IWKD E +Q+
Sbjct: 558 VDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRP 617
Query: 121 AKTVKNDNSSRF 132
+ + +
Sbjct: 618 RRGMFRTVGQLY 629
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 184 bits (469), Expect = 9e-55
Identities = 54/84 (64%), Positives = 66/84 (78%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLL
Sbjct: 208 SDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLL 267
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSR Q ER +HIFYQI +
Sbjct: 268 EKSRVTYQQSAERNYHIFYQICSN 291
Score = 62.0 bits (151), Expect = 8e-12
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V YS WL KN DP+NENVV+LL S++P VA ++K E
Sbjct: 587 VPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPE 626
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 183 bits (467), Expect = 3e-54
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 92 VAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANI 151
VA + G LEQQ+LQANPILEAFGNAKT +N+NSS FGKFI I F+ +G+I+GA+I
Sbjct: 199 VAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASI 258
Query: 152 ETYLLEKSRAIRQAKDERTFHIFYQILAG 180
++YLLEKSR + Q++ ER +HIFYQ+LAG
Sbjct: 259 QSYLLEKSRVVFQSETERNYHIFYQLLAG 287
Score = 62.0 bits (151), Expect = 8e-12
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIGE 103
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIAS 619
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 156 bits (397), Expect = 7e-45
Identities = 72/84 (85%), Positives = 76/84 (90%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLL
Sbjct: 212 PSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLL 271
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSRAIRQAKDERTFHIFY ++AG
Sbjct: 272 EKSRAIRQAKDERTFHIFYYLIAG 295
Score = 60.2 bits (146), Expect = 3e-11
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 61 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD +
Sbjct: 589 VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628
>1ohf_A Nudaurelia capensis omega virus capsid protein; viral coat,
auto-catalytic cleavage, quasiequivalence, NWV,
icosahedral virus; 2.80A {Nudaurelia capensis omega
virus} SCOP: b.121.4.8
Length = 644
Score = 37.7 bits (86), Expect = 0.001
Identities = 13/71 (18%), Positives = 25/71 (35%)
Query: 13 ARTRYDRMHNRAKPQERKNSRRDGPSLLFVTPGSPVPVLKGLKTAIEPVDYSAEKWLMKN 72
AR+R + + N + D + F T + +P + +D + W K
Sbjct: 36 ARSRANNIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKY 95
Query: 73 MDPLNENVVSL 83
+DP +
Sbjct: 96 LDPAGATESAR 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.007
Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 55/177 (31%)
Query: 35 DGPSL--LFVTPGS-----PVP--------VLKG--LKTAIEPVDYSAEKWLMKNMDPLN 77
D S L ++ GS VP L+ K EP + A + +P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-----DDEP-- 54
Query: 78 ENVVSL----LQVSQDPFVAHIWKDAEIG-----------ELEQQLLQANPILEAFGNAK 122
L L +V+ + + +++G E E L+ N I A A
Sbjct: 55 TTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HAL--AA 106
Query: 123 TVKNDNSSRFGK---FIRINFDASGYIAGANIETYLLEKSRAIRQAKDE--RTFHIF 174
+ +N + K I+ A A S R + + IF
Sbjct: 107 KLLQENDTTLVKTKELIKNYITAR---IMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Score = 33.9 bits (77), Expect = 0.024
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 36/114 (31%)
Query: 73 MDPLNENVVSLLQVSQDPFVAHIWKDAEIGELE------QQLLQANPILEA--FGNAKTV 124
MD L + S +W A+ + ++ NP+ FG K
Sbjct: 1633 MD--------LYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-- 1680
Query: 125 KNDNSSRFGKFIRINFDASGYIAGANIETYL--LEKSRAIRQAKDERTFHIFYQ 176
GK IR N+ A + ET + K+ I + +E + ++
Sbjct: 1681 --------GKRIRENYSAMIF------ETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Score = 31.2 bits (70), Expect = 0.19
Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 78/190 (41%)
Query: 42 VTPGSPVPVLKGLKTAIEPVDYSA------EKWLMKNMDPLNENVVSLLQV-------SQ 88
TPG LKG + + +A + W + +V + V
Sbjct: 258 FTPGELRSYLKGATGHSQGL-VTAVAIAETDSW-----ESFFVSVRKAITVLFFIGVRCY 311
Query: 89 DPF-----VAHIWKDA-EIGE-----------LEQQLLQANPILEAFGNAKTVKND---- 127
+ + I +D+ E E L Q+ +Q + N+
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNKT-NSHLPAGKQVEI 368
Query: 128 ---NSSRFGKFIRINFDASGY---IAGANIETYLLEKSRA---IRQAK---DERT----- 170
N ++ N SG + G N+ L K++A + Q++ ER
Sbjct: 369 SLVNGAK-------NLVVSGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 171 --------FH 172
FH
Sbjct: 419 RFLPVASPFH 428
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.044
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 28 ERKNSRRDGPSLLFVTPGSPVPVLKGLKTAIE 59
E++ ++ SL S P L +K +E
Sbjct: 18 EKQALKKLQASLKLYADDS-APAL-AIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.078
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 54 LKTAIEPVDYS--AEKWLMKNMDP-----LNENVVSLLQVSQDPFVA-HIWKDAEIGELE 105
++ + +Y + P + L F ++ + +L
Sbjct: 83 VEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 106 QQLLQANP----ILEA-FGNAKTV 124
Q LL+ P +++ G+ KT
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW 165
Score = 27.9 bits (61), Expect = 2.0
Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 44/184 (23%)
Query: 18 DRMHNRAKPQERKNSRRDGPSLLFVTPGSPVPVLKGL--------KTAIEPVDYSAEKWL 69
R + + + R +S + L + L A + S K L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSC-KIL 269
Query: 70 MKNMDPLNENVVSLLQVSQDPFVAHI--------------WKDAEIGELEQQLLQANPIL 115
+ + +S + H + D +L +++L NP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 116 EA-FGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRAIRQAKDERT---- 170
+ D + + + +N D + T ++E S + + + R
Sbjct: 330 LSIIA---ESIRDGLATWDNWKHVNCDK--------LTT-IIESSLNVLEPAEYRKMFDR 377
Query: 171 FHIF 174
+F
Sbjct: 378 LSVF 381
>3s6p_A Capsid protein; coat protein, beta barrel, IG-like domain, IC
virus; 2.50A {Helicoverpa armigera stunt virus}
Length = 575
Score = 31.5 bits (70), Expect = 0.13
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 35 DGPSLLFVTPGSPVPVLKGLKTAIEPVDYSAEKWLMKNMDPLNENVVSL 83
D ++ F S +P + +D + W K +DP +
Sbjct: 61 DANTVTFPANISSMPEFRNWAKGKIDLDSDSIGWYFKYLDPAGATESAR 109
>1a3a_A Mannitol-specific EII; phosphoenolpyruvate dependent
phosphotransferase system, IIA histidine
phosphorylation, phosphotransferase; 1.80A {Escherichia
coli} SCOP: d.112.1.1 PDB: 1j6t_A 2few_A*
Length = 148
Score = 29.9 bits (68), Expect = 0.25
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 70 MKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIGELEQQLLQANPILEAFGNA 121
M N+ L + L + + ++A I +QL++ + + A
Sbjct: 1 MANLFKLGAENIFLGRKAAT------KEEA-IRFAGEQLVKGGYVEPEYVQA 45
>2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: 1PE; 2.90A {Escherichia coli} SCOP: b.45.1.3
d.333.1.1
Length = 505
Score = 27.4 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 29 RKNSRRDGPSLLFVTP-GSPVPVLKGL 54
+ R GP+LLF P G +PVL L
Sbjct: 40 DRTLRAGGPALLFENPKGYSMPVLCNL 66
>2qqp_A Large capsid protein; capsid, coat protein, protein-RNA complex,
beta barre like domain, tetravirus, tetraviridae,
icosahedral virus; 3.80A {Providence virus}
Length = 556
Score = 26.9 bits (58), Expect = 5.2
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 1 MAQQAMSDTQFGARTRYDRMHNRAKPQERKNSRRDGPSLLFVTPGSP-------VPVLKG 53
M+ +A + T +R R + K E+ + P LL +P P +
Sbjct: 12 MSVRAQNVTVSNSRRRRRKNRKPRKQVEQATILK--PQLLPGESVAPSGGRGTMDPPVHE 69
Query: 54 LKTAIEPVDYSAEKWLMKNMDPLNE 78
+ A W K MDP
Sbjct: 70 ICAQSIDPSEGAVGWFYKYMDPAGA 94
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding,
phosphorylation, DNA-binding protein; NMR {Mycobacterium
tuberculosis}
Length = 148
Score = 25.4 bits (55), Expect = 7.9
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 33 RRDG----PSLLFVTPGSPVPVLKGLKTAIEPVDYSAE---KWL 69
RR G P + F G V L GL T + Y +WL
Sbjct: 61 RRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWL 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,661,618
Number of extensions: 148371
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 36
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)