RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17854
(181 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 114 bits (285), Expect = 2e-30
Identities = 72/84 (85%), Positives = 76/84 (90%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
GELE+QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD +GYI GANIETYLL
Sbjct: 134 PSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLL 193
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSRAIRQAKDERTFHIFY ++AG
Sbjct: 194 EKSRAIRQAKDERTFHIFYYLIAG 217
Score = 50.5 bits (120), Expect = 2e-08
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 60 PVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE--IGELEQQLLQANPILEA 117
V Y+A WL KNMDPLN+NV SLL S D FVA +WKD + +G + + + + A
Sbjct: 510 KVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSA 569
Query: 118 FGNAKTVKNDNSSRF 132
K + +
Sbjct: 570 SKTKKGMFRTVGQLY 584
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 107 bits (267), Expect = 6e-28
Identities = 48/90 (53%), Positives = 65/90 (72%)
Query: 91 FVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGAN 150
+ A + A +E+++L +NPI+E+ GNAKT +NDNSSRFGK+I I FD I GAN
Sbjct: 117 YFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGAN 176
Query: 151 IETYLLEKSRAIRQAKDERTFHIFYQILAG 180
+ TYLLEKSR + QA++ER +HIFYQ+ A
Sbjct: 177 MRTYLLEKSRVVFQAEEERNYHIFYQLCAS 206
Score = 38.2 bits (88), Expect = 4e-04
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 60 PVDYSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAE 100
V+Y E +L KN D + E + +L+ S+ + +++D E
Sbjct: 494 KVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 535
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 106 bits (266), Expect = 7e-28
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 98 DAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLE 157
D + G LE Q++QANP+LEA+GNAKT +N+NSSRFGKFIRI+F +G IAGA+IETYLLE
Sbjct: 161 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLE 220
Query: 158 KSRAIRQAKDERTFHIFYQILAG 180
KSR Q ER +HIFYQI +
Sbjct: 221 KSRVTYQQSAERNYHIFYQICSN 243
Score = 46.2 bits (109), Expect = 7e-07
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 28 ERKNSRRDGPSLLFVTPGSPVPVLKG-----LKTAIEPVDYSAEKWLMKNMDPLNENVVS 82
++ G + +F PG P +G L V YS WL KN DP+NENVV+
Sbjct: 501 DKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVA 560
Query: 83 LLQVSQDPFVAHIWKDAE 100
LL S++P VA ++K E
Sbjct: 561 LLGASKEPLVAELFKAPE 578
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 104 bits (259), Expect = 7e-27
Identities = 54/79 (68%), Positives = 66/79 (83%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LE Q++ ANP+LEAFGNAKTV+NDNSSRFGKFIRI+F A+G +A A+IETYLLEKSR
Sbjct: 167 GTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRV 226
Query: 162 IRQAKDERTFHIFYQILAG 180
Q ER++HIFYQI++
Sbjct: 227 TFQLPAERSYHIFYQIMSN 245
Score = 39.3 bits (91), Expect = 2e-04
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 60 PVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKD 98
VDY+ WL KN DPLNE V+ L Q S +A ++
Sbjct: 538 TVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFAT 576
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 103 bits (257), Expect = 1e-26
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 97 KDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
+ + + LL +NP+LEAFGNAKT++NDNSSRFGK++ + F+A G G I YLL
Sbjct: 117 QSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLL 176
Query: 157 EKSRAIRQAKDERTFHIFYQILAG 180
EKSR + + + ER+FHIFYQ+L G
Sbjct: 177 EKSRVVGRTQGERSFHIFYQMLKG 200
Score = 42.8 bits (100), Expect = 8e-06
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 60 PVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 100
V Y +L KN D L +++S +Q S DP V ++
Sbjct: 503 DVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTR 543
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 103 bits (257), Expect = 1e-26
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 102 GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 161
G LEQQ+LQANPILEAFGNAKT +N+NSSRFGKFI I F+ +G+I+GA+I++YLLEKSR
Sbjct: 162 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 221
Query: 162 IRQAKDERTFHIFYQILAG 180
+ Q++ ER +HIFYQ+LAG
Sbjct: 222 VFQSETERNYHIFYQLLAG 240
Score = 48.2 bits (114), Expect = 1e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 60 PVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIGE 103
V Y + WL KN DPL +++ + S D V ++ D I
Sbjct: 529 QVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIAS 572
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 32.3 bits (73), Expect = 0.025
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 41 FVTPGSPVPVLKGLKTAIEPVDYSAEKWLMKNMDPLNE 78
F T + +P + +D + W K +DP
Sbjct: 4 FPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGA 41
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Length = 155
Score = 26.4 bits (57), Expect = 1.4
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 23 RAKPQERKNSRRDGPSLLFVTPGSPVPVLKGLKTAIEPV 61
+ R G ++F PGS V + I P
Sbjct: 109 SSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPE 147
>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.4 bits (55), Expect = 2.6
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 112 NPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLL 156
NP + +A + +S GK +R+ L+
Sbjct: 34 NPEVPFESSAYRIS---ASARGKELRLILSPLPGAQPQQEPLALV 75
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.4 bits (52), Expect = 7.1
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 24 AKPQERKNSRRDGPSLLFVTPGSPVPVLKGLKTAIEPV 61
+ Q R + +L+ PGS + I P
Sbjct: 115 STLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQ 152
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor
biosynthesis protein DIP0503 {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 163
Score = 24.4 bits (52), Expect = 7.5
Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 5/50 (10%)
Query: 25 KPQERKNSRRDGPSLLFVTPGSPVPVLKGLKTAIEPVDYSAEKWLMKNMD 74
+ R D +L+ P S + + + + +D
Sbjct: 118 RGIVGVTGRDDHAALIVNAPSSSGGITDTWAVISPVIPN-----IFEGLD 162
>d1exua2 d.19.1.1 (A:4-176) Fc (IgG) receptor, alpha-1 and alpha-2
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 24.2 bits (52), Expect = 9.4
Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 3/30 (10%)
Query: 8 DTQFGARTRYDRMHNRAKPQERKNSRRDGP 37
Q+ Y+ + A+P
Sbjct: 29 PQQYL---SYNSLRGEAEPCGAWVWENQVS 55
>d2j43a1 b.3.1.3 (A:5-111) Pullulanase PulA {Streptococcus pyogenes
[TaxId: 1314]}
Length = 107
Score = 23.7 bits (51), Expect = 9.9
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 11/56 (19%)
Query: 89 DPFVAHIWKDAEIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASG 144
+W D P + A T+ +G ++ + A
Sbjct: 19 GSLGLWVWGDV-----------DQPSKDWPNGAITMTKAKKDDYGYYLDVPLAAKH 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 635,545
Number of extensions: 27885
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 22
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)