Query psy17856
Match_columns 79
No_of_seqs 121 out of 1017
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:47:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.8 4.1E-20 8.9E-25 156.5 4.6 64 2-68 134-199 (1930)
2 COG5022 Myosin heavy chain [Cy 99.8 5.9E-19 1.3E-23 146.1 5.0 64 3-69 119-184 (1463)
3 cd01377 MYSc_type_II Myosin mo 99.7 9.8E-19 2.1E-23 138.3 5.2 63 4-69 59-123 (693)
4 cd01383 MYSc_type_VIII Myosin 99.7 1.1E-18 2.3E-23 137.9 5.1 62 3-67 61-122 (677)
5 PTZ00014 myosin-A; Provisional 99.7 1.3E-18 2.9E-23 139.6 5.1 60 4-66 150-212 (821)
6 cd01380 MYSc_type_V Myosin mot 99.7 1.4E-18 3.1E-23 137.3 5.0 62 4-68 54-117 (691)
7 cd01385 MYSc_type_IX Myosin mo 99.7 2.4E-18 5.3E-23 136.1 4.9 61 4-67 61-124 (692)
8 cd01381 MYSc_type_VII Myosin m 99.7 2.6E-18 5.6E-23 135.6 5.0 61 4-67 54-116 (671)
9 cd01386 MYSc_type_XVIII Myosin 99.7 2.6E-18 5.7E-23 137.1 4.9 62 4-68 54-117 (767)
10 cd01378 MYSc_type_I Myosin mot 99.7 2.7E-18 5.9E-23 135.4 4.9 62 4-68 54-117 (674)
11 PF00063 Myosin_head: Myosin h 99.7 2.5E-18 5.3E-23 134.8 4.1 63 4-69 53-117 (689)
12 cd01384 MYSc_type_XI Myosin mo 99.7 4.3E-18 9.3E-23 134.4 5.1 62 4-68 56-119 (674)
13 cd00124 MYSc Myosin motor doma 99.7 5E-18 1.1E-22 133.7 4.9 61 4-67 54-116 (679)
14 cd01382 MYSc_type_VI Myosin mo 99.7 7.8E-18 1.7E-22 133.6 4.9 61 4-67 59-121 (717)
15 smart00242 MYSc Myosin. Large 99.7 8.8E-18 1.9E-22 132.5 4.9 62 4-68 60-123 (677)
16 cd01387 MYSc_type_XV Myosin mo 99.7 1E-17 2.2E-22 132.3 5.0 60 4-66 55-116 (677)
17 KOG0162|consensus 99.7 3.5E-17 7.6E-22 130.3 4.2 63 3-68 71-135 (1106)
18 KOG0164|consensus 99.7 4.7E-17 1E-21 129.2 4.6 63 3-68 61-125 (1001)
19 cd01379 MYSc_type_III Myosin m 99.6 4.3E-16 9.3E-21 122.8 4.9 60 4-66 54-115 (653)
20 KOG0163|consensus 99.5 2.1E-14 4.6E-19 115.1 4.4 61 4-67 112-174 (1259)
21 KOG0160|consensus 99.4 4.5E-13 9.7E-18 108.2 4.5 61 4-67 63-124 (862)
22 KOG4229|consensus 99.3 2.5E-12 5.4E-17 105.7 4.9 51 12-65 126-176 (1062)
23 PF13207 AAA_17: AAA domain; P 97.1 0.00027 6E-09 43.5 1.8 23 39-61 1-23 (121)
24 cd00009 AAA The AAA+ (ATPases 97.0 0.00093 2E-08 40.5 3.6 31 32-62 14-44 (151)
25 PF13401 AAA_22: AAA domain; P 97.0 0.00032 7E-09 43.5 1.6 29 35-63 2-30 (131)
26 PF13191 AAA_16: AAA ATPase do 97.0 0.00047 1E-08 44.8 1.9 33 32-64 19-51 (185)
27 cd01363 Motor_domain Myosin an 96.9 0.0006 1.3E-08 46.0 2.2 34 21-55 9-42 (186)
28 smart00382 AAA ATPases associa 96.7 0.00098 2.1E-08 39.9 1.8 28 37-64 2-29 (148)
29 TIGR02322 phosphon_PhnN phosph 96.7 0.001 2.2E-08 43.9 2.0 25 38-62 2-26 (179)
30 PF13238 AAA_18: AAA domain; P 96.7 0.00086 1.9E-08 41.0 1.6 22 40-61 1-22 (129)
31 PF00004 AAA: ATPase family as 96.6 0.0012 2.6E-08 40.6 1.8 23 40-62 1-23 (132)
32 PRK00300 gmk guanylate kinase; 96.6 0.0014 3E-08 44.0 2.1 27 36-62 4-30 (205)
33 PRK05480 uridine/cytidine kina 96.5 0.0019 4.1E-08 43.8 2.4 27 35-61 4-30 (209)
34 TIGR00235 udk uridine kinase. 96.5 0.0021 4.5E-08 43.7 2.2 28 35-62 4-31 (207)
35 PRK05541 adenylylsulfate kinas 96.4 0.0021 4.6E-08 42.4 2.1 28 35-62 5-32 (176)
36 PF05729 NACHT: NACHT domain 96.4 0.0023 5E-08 40.5 2.2 27 39-65 2-28 (166)
37 cd02019 NK Nucleoside/nucleoti 96.4 0.0021 4.5E-08 37.0 1.9 22 40-61 2-23 (69)
38 PRK00131 aroK shikimate kinase 96.4 0.0025 5.3E-08 41.1 2.4 26 36-61 3-28 (175)
39 PRK06762 hypothetical protein; 96.4 0.0023 4.9E-08 41.7 2.2 24 38-61 3-26 (166)
40 PF01583 APS_kinase: Adenylyls 96.4 0.0027 5.9E-08 42.7 2.6 28 38-65 3-30 (156)
41 PRK07261 topology modulation p 96.4 0.0023 5E-08 42.7 2.0 23 39-61 2-24 (171)
42 PRK08233 hypothetical protein; 96.3 0.0019 4.2E-08 42.1 1.5 25 38-62 4-28 (182)
43 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.0053 1.1E-07 41.5 3.7 34 29-62 30-63 (226)
44 PF07693 KAP_NTPase: KAP famil 96.3 0.0046 1E-07 43.9 3.5 30 35-64 18-47 (325)
45 COG0444 DppD ABC-type dipeptid 96.3 0.0023 5.1E-08 47.5 1.8 28 35-62 29-56 (316)
46 cd00227 CPT Chloramphenicol (C 96.3 0.0032 6.9E-08 41.7 2.3 25 37-61 2-26 (175)
47 TIGR03015 pepcterm_ATPase puta 96.3 0.0045 9.7E-08 42.9 3.0 28 35-62 41-68 (269)
48 cd02023 UMPK Uridine monophosp 96.2 0.0027 5.7E-08 42.6 1.8 22 40-61 2-23 (198)
49 PRK08118 topology modulation p 96.2 0.0031 6.7E-08 42.0 2.1 24 38-61 2-25 (167)
50 PF03266 NTPase_1: NTPase; In 96.2 0.0028 6.1E-08 42.6 1.8 23 40-62 2-24 (168)
51 cd01130 VirB11-like_ATPase Typ 96.2 0.0047 1E-07 41.5 2.9 27 36-62 24-50 (186)
52 cd01131 PilT Pilus retraction 96.2 0.0033 7.1E-08 42.8 2.0 25 39-63 3-27 (198)
53 PF00485 PRK: Phosphoribulokin 96.2 0.0027 5.9E-08 42.8 1.6 24 40-63 2-25 (194)
54 PRK09270 nucleoside triphospha 96.2 0.0071 1.5E-07 41.8 3.7 31 35-65 31-61 (229)
55 PRK06696 uridine kinase; Valid 96.2 0.0053 1.2E-07 42.3 3.1 29 34-62 19-47 (223)
56 TIGR02868 CydC thiol reductant 96.2 0.0021 4.5E-08 49.1 1.1 31 35-65 359-389 (529)
57 PF12846 AAA_10: AAA-like doma 96.2 0.0038 8.3E-08 43.1 2.3 29 37-65 1-29 (304)
58 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0037 8.1E-08 39.7 2.0 24 35-58 13-36 (107)
59 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0043 9.2E-08 40.7 2.2 28 35-62 20-47 (133)
60 TIGR02928 orc1/cdc6 family rep 96.1 0.0072 1.6E-07 43.8 3.5 32 32-63 35-66 (365)
61 PF00910 RNA_helicase: RNA hel 96.1 0.0036 7.8E-08 38.7 1.7 26 40-65 1-26 (107)
62 TIGR03263 guanyl_kin guanylate 96.1 0.0032 7E-08 41.3 1.5 25 38-62 2-26 (180)
63 cd01918 HprK_C HprK/P, the bif 96.0 0.0041 8.8E-08 41.6 1.9 24 36-59 13-36 (149)
64 cd02020 CMPK Cytidine monophos 96.0 0.0041 8.9E-08 39.0 1.9 22 40-61 2-23 (147)
65 cd01129 PulE-GspE PulE/GspE Th 96.0 0.0081 1.8E-07 42.9 3.5 35 28-63 72-106 (264)
66 cd03258 ABC_MetN_methionine_tr 96.0 0.0032 6.8E-08 43.2 1.3 31 35-65 29-59 (233)
67 PRK11176 lipid transporter ATP 96.0 0.0034 7.3E-08 48.4 1.5 31 35-65 367-397 (582)
68 PRK10078 ribose 1,5-bisphospho 96.0 0.0038 8.1E-08 41.8 1.6 24 38-61 3-26 (186)
69 PF13671 AAA_33: AAA domain; P 96.0 0.0033 7.2E-08 39.5 1.2 22 40-61 2-23 (143)
70 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0041 9E-08 40.1 1.6 23 39-61 2-24 (171)
71 PF00005 ABC_tran: ABC transpo 95.9 0.0038 8.2E-08 39.1 1.3 29 35-63 9-37 (137)
72 TIGR02673 FtsE cell division A 95.9 0.0033 7.1E-08 42.5 1.1 28 35-62 26-53 (214)
73 PRK13833 conjugal transfer pro 95.9 0.0085 1.8E-07 44.4 3.4 31 30-62 139-169 (323)
74 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0035 7.6E-08 42.5 1.2 29 35-63 28-56 (218)
75 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0029 6.4E-08 43.1 0.9 28 35-62 28-55 (220)
76 PRK15177 Vi polysaccharide exp 95.9 0.004 8.6E-08 42.7 1.5 31 35-65 11-41 (213)
77 cd03292 ABC_FtsE_transporter F 95.9 0.0033 7.1E-08 42.4 1.0 29 35-63 25-53 (214)
78 TIGR01166 cbiO cobalt transpor 95.9 0.0037 7.9E-08 41.7 1.2 28 35-62 16-43 (190)
79 PRK00889 adenylylsulfate kinas 95.9 0.0074 1.6E-07 39.7 2.6 27 36-62 3-29 (175)
80 cd03259 ABC_Carb_Solutes_like 95.9 0.0036 7.9E-08 42.3 1.1 29 35-63 24-52 (213)
81 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0039 8.4E-08 42.1 1.3 29 35-63 25-53 (211)
82 cd02028 UMPK_like Uridine mono 95.9 0.0052 1.1E-07 41.3 1.9 23 40-62 2-24 (179)
83 TIGR00960 3a0501s02 Type II (G 95.9 0.0036 7.8E-08 42.4 1.1 29 35-63 27-55 (216)
84 PRK06217 hypothetical protein; 95.9 0.0047 1E-07 41.2 1.6 23 39-61 3-25 (183)
85 cd02027 APSK Adenosine 5'-phos 95.9 0.0055 1.2E-07 40.0 1.9 23 40-62 2-24 (149)
86 TIGR01313 therm_gnt_kin carboh 95.8 0.0041 9E-08 40.3 1.2 22 40-61 1-22 (163)
87 PRK06547 hypothetical protein; 95.8 0.0091 2E-07 40.2 2.9 30 32-61 10-39 (172)
88 cd03260 ABC_PstB_phosphate_tra 95.8 0.005 1.1E-07 42.0 1.6 27 35-61 24-50 (227)
89 PRK11308 dppF dipeptide transp 95.8 0.004 8.7E-08 45.7 1.1 29 35-63 39-67 (327)
90 COG0529 CysC Adenylylsulfate k 95.8 0.012 2.6E-07 41.2 3.4 33 33-65 19-51 (197)
91 cd01120 RecA-like_NTPases RecA 95.8 0.0067 1.4E-07 37.9 2.0 24 40-63 2-25 (165)
92 PF07724 AAA_2: AAA domain (Cd 95.8 0.0071 1.5E-07 40.7 2.2 24 39-62 5-28 (171)
93 TIGR02315 ABC_phnC phosphonate 95.8 0.0044 9.4E-08 42.7 1.2 28 35-62 26-53 (243)
94 KOG0925|consensus 95.8 0.0098 2.1E-07 47.3 3.2 32 27-58 52-83 (699)
95 PTZ00301 uridine kinase; Provi 95.8 0.0061 1.3E-07 42.4 1.9 24 39-62 5-28 (210)
96 COG4608 AppF ABC-type oligopep 95.8 0.0044 9.6E-08 45.2 1.2 32 35-66 37-68 (268)
97 PF00437 T2SE: Type II/IV secr 95.7 0.0077 1.7E-07 42.3 2.3 30 35-64 125-154 (270)
98 cd00071 GMPK Guanosine monopho 95.7 0.0053 1.1E-07 39.6 1.4 23 40-62 2-24 (137)
99 PRK00411 cdc6 cell division co 95.7 0.013 2.8E-07 42.9 3.6 31 33-63 51-81 (394)
100 TIGR03608 L_ocin_972_ABC putat 95.7 0.0045 9.8E-08 41.5 1.1 28 35-62 22-49 (206)
101 PRK15093 antimicrobial peptide 95.7 0.0059 1.3E-07 44.7 1.7 28 35-62 31-58 (330)
102 PRK14964 DNA polymerase III su 95.7 0.0088 1.9E-07 46.6 2.8 36 32-67 30-65 (491)
103 PRK03846 adenylylsulfate kinas 95.7 0.0093 2E-07 40.3 2.6 28 35-62 22-49 (198)
104 cd03256 ABC_PhnC_transporter A 95.7 0.005 1.1E-07 42.2 1.2 29 35-63 25-53 (241)
105 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0071 1.5E-07 39.6 1.9 24 38-61 4-27 (188)
106 cd03266 ABC_NatA_sodium_export 95.7 0.0052 1.1E-07 41.6 1.3 28 35-62 29-56 (218)
107 TIGR02203 MsbA_lipidA lipid A 95.7 0.0055 1.2E-07 47.0 1.5 31 35-65 356-386 (571)
108 cd02025 PanK Pantothenate kina 95.7 0.0068 1.5E-07 42.2 1.8 23 40-62 2-24 (220)
109 cd03224 ABC_TM1139_LivF_branch 95.7 0.0049 1.1E-07 41.8 1.1 28 35-62 24-51 (222)
110 TIGR03410 urea_trans_UrtE urea 95.7 0.005 1.1E-07 42.1 1.1 29 35-63 24-52 (230)
111 PRK15079 oligopeptide ABC tran 95.7 0.0046 1E-07 45.4 1.0 29 35-63 45-73 (331)
112 cd03296 ABC_CysA_sulfate_impor 95.6 0.0051 1.1E-07 42.4 1.1 28 35-62 26-53 (239)
113 PF07728 AAA_5: AAA domain (dy 95.6 0.0067 1.5E-07 38.3 1.6 22 40-61 2-23 (139)
114 cd03268 ABC_BcrA_bacitracin_re 95.6 0.0052 1.1E-07 41.4 1.1 28 35-62 24-51 (208)
115 cd03235 ABC_Metallic_Cations A 95.6 0.0047 1E-07 41.8 0.9 28 35-62 23-50 (213)
116 PF03668 ATP_bind_2: P-loop AT 95.6 0.0063 1.4E-07 44.7 1.6 20 38-57 2-21 (284)
117 TIGR02204 MsbA_rel ABC transpo 95.6 0.0059 1.3E-07 46.9 1.5 31 35-65 364-394 (576)
118 COG1124 DppF ABC-type dipeptid 95.6 0.0059 1.3E-07 44.2 1.4 33 35-67 31-63 (252)
119 cd03265 ABC_DrrA DrrA is the A 95.6 0.0083 1.8E-07 40.8 2.1 28 35-62 24-51 (220)
120 cd03218 ABC_YhbG The ABC trans 95.6 0.0055 1.2E-07 41.9 1.2 28 35-62 24-51 (232)
121 cd03262 ABC_HisP_GlnQ_permease 95.6 0.0057 1.2E-07 41.2 1.2 28 35-62 24-51 (213)
122 TIGR01184 ntrCD nitrate transp 95.6 0.0055 1.2E-07 42.3 1.2 29 35-63 9-37 (230)
123 cd03219 ABC_Mj1267_LivG_branch 95.6 0.005 1.1E-07 42.2 0.9 28 35-62 24-51 (236)
124 cd03269 ABC_putative_ATPase Th 95.6 0.0086 1.9E-07 40.4 2.0 28 35-62 24-51 (210)
125 PRK14961 DNA polymerase III su 95.6 0.02 4.4E-07 42.3 4.2 38 27-64 27-65 (363)
126 PRK10908 cell division protein 95.6 0.0054 1.2E-07 41.8 1.0 28 35-62 26-53 (222)
127 PRK11174 cysteine/glutathione 95.6 0.0056 1.2E-07 47.3 1.2 27 35-61 374-400 (588)
128 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.0057 1.2E-07 42.1 1.1 28 35-62 25-52 (236)
129 PRK10790 putative multidrug tr 95.5 0.0057 1.2E-07 47.4 1.2 31 35-65 365-395 (592)
130 TIGR03797 NHPM_micro_ABC2 NHPM 95.5 0.0057 1.2E-07 48.3 1.2 32 35-66 477-508 (686)
131 cd03226 ABC_cobalt_CbiO_domain 95.5 0.0058 1.3E-07 41.2 1.1 28 35-62 24-51 (205)
132 cd03301 ABC_MalK_N The N-termi 95.5 0.0059 1.3E-07 41.2 1.1 29 35-63 24-52 (213)
133 cd03229 ABC_Class3 This class 95.5 0.0095 2.1E-07 39.5 2.1 28 35-62 24-51 (178)
134 PRK12402 replication factor C 95.5 0.019 4.1E-07 40.9 3.7 32 32-63 31-62 (337)
135 PF02367 UPF0079: Uncharacteri 95.5 0.0088 1.9E-07 38.8 1.8 28 35-62 13-40 (123)
136 TIGR02211 LolD_lipo_ex lipopro 95.5 0.0062 1.3E-07 41.3 1.1 28 35-62 29-56 (221)
137 cd00464 SK Shikimate kinase (S 95.5 0.0087 1.9E-07 38.0 1.7 23 39-61 1-23 (154)
138 PRK13645 cbiO cobalt transport 95.5 0.006 1.3E-07 43.5 1.1 31 35-65 35-65 (289)
139 TIGR02782 TrbB_P P-type conjug 95.5 0.0092 2E-07 43.5 2.0 27 37-63 132-158 (299)
140 cd03223 ABCD_peroxisomal_ALDP 95.5 0.007 1.5E-07 39.9 1.3 28 35-62 25-52 (166)
141 PRK13539 cytochrome c biogenes 95.5 0.0066 1.4E-07 41.2 1.2 28 35-62 26-53 (207)
142 PRK08903 DnaA regulatory inact 95.5 0.019 4.1E-07 39.2 3.5 28 35-62 40-67 (227)
143 PRK09473 oppD oligopeptide tra 95.5 0.0086 1.9E-07 44.0 1.9 28 35-62 40-67 (330)
144 TIGR01978 sufC FeS assembly AT 95.5 0.0097 2.1E-07 40.9 2.0 27 35-61 24-50 (243)
145 PRK05707 DNA polymerase III su 95.5 0.024 5.2E-07 41.9 4.2 42 25-66 9-51 (328)
146 PRK13657 cyclic beta-1,2-gluca 95.5 0.0063 1.4E-07 47.2 1.2 31 35-65 359-389 (588)
147 cd03257 ABC_NikE_OppD_transpor 95.5 0.0063 1.4E-07 41.3 1.1 29 35-63 29-57 (228)
148 cd03261 ABC_Org_Solvent_Resist 95.5 0.0063 1.4E-07 41.8 1.1 29 35-63 24-52 (235)
149 cd03297 ABC_ModC_molybdenum_tr 95.4 0.0062 1.3E-07 41.3 1.0 27 35-62 22-48 (214)
150 PRK11124 artP arginine transpo 95.4 0.01 2.2E-07 41.0 2.0 28 35-62 26-53 (242)
151 cd03230 ABC_DR_subfamily_A Thi 95.4 0.0065 1.4E-07 40.1 1.0 28 35-62 24-51 (173)
152 TIGR02323 CP_lyasePhnK phospho 95.4 0.0062 1.3E-07 42.3 1.0 29 35-63 27-55 (253)
153 PRK10751 molybdopterin-guanine 95.4 0.009 1.9E-07 40.8 1.7 26 38-63 7-32 (173)
154 TIGR02770 nickel_nikD nickel i 95.4 0.0099 2.1E-07 40.9 2.0 28 35-62 10-37 (230)
155 PRK11022 dppD dipeptide transp 95.4 0.0082 1.8E-07 43.9 1.6 28 35-62 31-58 (326)
156 PRK09493 glnQ glutamine ABC tr 95.4 0.0066 1.4E-07 41.8 1.1 29 35-63 25-53 (240)
157 TIGR01420 pilT_fam pilus retra 95.4 0.012 2.5E-07 43.4 2.4 35 27-62 113-147 (343)
158 TIGR01193 bacteriocin_ABC ABC- 95.4 0.0069 1.5E-07 48.0 1.3 31 35-65 498-528 (708)
159 PRK10584 putative ABC transpor 95.4 0.0071 1.5E-07 41.3 1.2 28 35-62 34-61 (228)
160 PRK14737 gmk guanylate kinase; 95.4 0.0085 1.8E-07 40.7 1.6 25 37-61 4-28 (186)
161 cd03294 ABC_Pro_Gly_Bertaine T 95.4 0.0072 1.6E-07 42.7 1.2 29 35-63 48-76 (269)
162 PRK09825 idnK D-gluconate kina 95.4 0.012 2.5E-07 39.6 2.2 26 37-62 3-28 (176)
163 PRK11629 lolD lipoprotein tran 95.4 0.0067 1.5E-07 41.7 1.0 28 35-62 33-60 (233)
164 PRK14242 phosphate transporter 95.4 0.01 2.2E-07 41.2 2.0 27 35-61 30-56 (253)
165 PRK11248 tauB taurine transpor 95.4 0.0071 1.5E-07 42.5 1.1 28 35-62 25-52 (255)
166 PRK08084 DNA replication initi 95.4 0.023 4.9E-07 39.7 3.7 30 33-62 41-70 (235)
167 PRK14531 adenylate kinase; Pro 95.4 0.012 2.5E-07 39.4 2.1 24 38-61 3-26 (183)
168 TIGR02324 CP_lyasePhnL phospho 95.4 0.0075 1.6E-07 41.1 1.2 29 35-63 32-60 (224)
169 cd03298 ABC_ThiQ_thiamine_tran 95.4 0.0072 1.6E-07 40.8 1.1 28 35-62 22-49 (211)
170 COG2274 SunT ABC-type bacterio 95.4 0.0071 1.5E-07 49.0 1.2 31 35-65 497-527 (709)
171 TIGR00972 3a0107s01c2 phosphat 95.4 0.011 2.4E-07 41.0 2.0 28 35-62 25-52 (247)
172 PRK14527 adenylate kinase; Pro 95.4 0.012 2.7E-07 39.4 2.2 27 35-61 4-30 (191)
173 cd03234 ABCG_White The White s 95.3 0.0096 2.1E-07 40.7 1.7 28 35-62 31-58 (226)
174 PHA02530 pseT polynucleotide k 95.3 0.0098 2.1E-07 42.1 1.8 24 38-61 3-26 (300)
175 PRK14247 phosphate ABC transpo 95.3 0.011 2.4E-07 40.9 2.0 27 35-61 27-53 (250)
176 PRK13541 cytochrome c biogenes 95.3 0.0077 1.7E-07 40.4 1.2 28 35-62 24-51 (195)
177 PRK04182 cytidylate kinase; Pr 95.3 0.011 2.3E-07 38.4 1.8 23 39-61 2-24 (180)
178 PRK04040 adenylate kinase; Pro 95.3 0.01 2.2E-07 40.4 1.7 24 38-61 3-26 (188)
179 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.0082 1.8E-07 42.2 1.3 28 36-63 24-51 (246)
180 PRK14738 gmk guanylate kinase; 95.3 0.012 2.5E-07 40.3 2.0 26 35-60 11-36 (206)
181 PRK11300 livG leucine/isoleuci 95.3 0.0077 1.7E-07 41.8 1.1 29 35-63 29-57 (255)
182 PF03193 DUF258: Protein of un 95.3 0.0073 1.6E-07 40.9 1.0 34 28-61 26-59 (161)
183 PRK11247 ssuB aliphatic sulfon 95.3 0.0076 1.6E-07 42.7 1.1 29 35-63 36-64 (257)
184 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.011 2.3E-07 38.9 1.8 22 40-61 2-23 (183)
185 PF01637 Arch_ATPase: Archaeal 95.3 0.013 2.8E-07 38.8 2.2 33 29-61 12-44 (234)
186 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.013 2.9E-07 43.8 2.4 35 28-63 126-160 (358)
187 cd02021 GntK Gluconate kinase 95.3 0.01 2.2E-07 37.9 1.5 22 40-61 2-23 (150)
188 PF03205 MobB: Molybdopterin g 95.3 0.012 2.5E-07 38.5 1.8 26 39-64 2-27 (140)
189 cd03263 ABC_subfamily_A The AB 95.3 0.0082 1.8E-07 40.7 1.2 28 35-62 26-53 (220)
190 PRK13632 cbiO cobalt transport 95.3 0.0084 1.8E-07 42.4 1.2 29 35-63 33-61 (271)
191 PRK13538 cytochrome c biogenes 95.3 0.0082 1.8E-07 40.6 1.1 29 35-63 25-53 (204)
192 cd02024 NRK1 Nicotinamide ribo 95.3 0.01 2.2E-07 40.7 1.6 22 40-61 2-23 (187)
193 PRK13342 recombination factor 95.2 0.023 5E-07 42.7 3.6 36 26-61 25-60 (413)
194 PRK05563 DNA polymerase III su 95.2 0.031 6.6E-07 44.0 4.4 34 32-65 33-66 (559)
195 cd03267 ABC_NatA_like Similar 95.2 0.012 2.7E-07 40.7 2.0 28 35-62 45-72 (236)
196 TIGR03375 type_I_sec_LssB type 95.2 0.0083 1.8E-07 47.4 1.2 31 35-65 489-519 (694)
197 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.2 0.0078 1.7E-07 41.4 1.0 28 35-62 46-73 (224)
198 PRK13900 type IV secretion sys 95.2 0.0097 2.1E-07 44.0 1.5 26 37-62 160-185 (332)
199 PRK05057 aroK shikimate kinase 95.2 0.014 3E-07 38.9 2.1 25 37-61 4-28 (172)
200 TIGR03005 ectoine_ehuA ectoine 95.2 0.0083 1.8E-07 41.7 1.1 29 35-63 24-52 (252)
201 PRK13851 type IV secretion sys 95.2 0.0093 2E-07 44.5 1.4 27 36-62 161-187 (344)
202 cd03245 ABCC_bacteriocin_expor 95.2 0.013 2.8E-07 39.7 2.0 27 35-61 28-54 (220)
203 PRK13638 cbiO cobalt transport 95.2 0.0079 1.7E-07 42.4 0.9 29 35-63 25-53 (271)
204 PRK14251 phosphate ABC transpo 95.2 0.013 2.8E-07 40.6 2.0 27 35-61 28-54 (251)
205 PRK14248 phosphate ABC transpo 95.2 0.013 2.8E-07 41.2 2.0 27 35-61 45-71 (268)
206 COG1660 Predicted P-loop-conta 95.2 0.0097 2.1E-07 43.7 1.4 19 39-57 3-21 (286)
207 COG0194 Gmk Guanylate kinase [ 95.2 0.011 2.4E-07 41.2 1.6 25 37-61 4-28 (191)
208 cd03215 ABC_Carb_Monos_II This 95.2 0.0086 1.9E-07 39.8 1.0 29 35-63 24-52 (182)
209 cd03254 ABCC_Glucan_exporter_l 95.2 0.0092 2E-07 40.7 1.2 28 35-62 27-54 (229)
210 TIGR02902 spore_lonB ATP-depen 95.2 0.038 8.2E-07 43.2 4.7 33 29-61 78-110 (531)
211 TIGR00968 3a0106s01 sulfate AB 95.2 0.0092 2E-07 41.3 1.2 28 35-62 24-51 (237)
212 cd03250 ABCC_MRP_domain1 Domai 95.2 0.0098 2.1E-07 40.0 1.3 28 35-62 29-56 (204)
213 PRK10771 thiQ thiamine transpo 95.2 0.009 2E-07 41.0 1.1 29 35-63 23-51 (232)
214 PRK03839 putative kinase; Prov 95.2 0.013 2.8E-07 38.7 1.8 23 39-61 2-24 (180)
215 PRK11264 putative amino-acid A 95.2 0.014 3E-07 40.4 2.0 28 35-62 27-54 (250)
216 cd03246 ABCC_Protease_Secretio 95.2 0.011 2.4E-07 39.0 1.5 28 35-62 26-53 (173)
217 PRK07993 DNA polymerase III su 95.2 0.034 7.3E-07 41.2 4.2 42 25-66 8-53 (334)
218 PRK10419 nikE nickel transport 95.2 0.009 1.9E-07 42.2 1.1 28 35-62 36-63 (268)
219 cd03238 ABC_UvrA The excision 95.2 0.014 3.1E-07 39.5 2.1 24 35-58 19-42 (176)
220 PRK14255 phosphate ABC transpo 95.2 0.014 2.9E-07 40.5 2.0 26 35-60 29-54 (252)
221 cd03236 ABC_RNaseL_inhibitor_d 95.2 0.0098 2.1E-07 42.2 1.3 33 34-66 23-55 (255)
222 TIGR01277 thiQ thiamine ABC tr 95.2 0.0088 1.9E-07 40.6 1.0 30 35-64 22-51 (213)
223 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.011 2.3E-07 40.0 1.4 28 35-62 32-59 (207)
224 cd03231 ABC_CcmA_heme_exporter 95.2 0.0091 2E-07 40.3 1.1 28 35-62 24-51 (201)
225 TIGR03740 galliderm_ABC gallid 95.2 0.014 3.1E-07 39.7 2.1 28 35-62 24-51 (223)
226 PRK10247 putative ABC transpor 95.1 0.01 2.2E-07 40.7 1.4 28 35-62 31-58 (225)
227 TIGR02857 CydD thiol reductant 95.1 0.0089 1.9E-07 45.7 1.1 31 35-65 346-376 (529)
228 PRK13540 cytochrome c biogenes 95.1 0.015 3.2E-07 39.2 2.1 28 35-62 25-52 (200)
229 PRK05896 DNA polymerase III su 95.1 0.031 6.8E-07 44.7 4.2 39 27-65 27-66 (605)
230 PRK10744 pstB phosphate transp 95.1 0.014 3E-07 40.9 2.0 27 35-61 37-63 (260)
231 cd03295 ABC_OpuCA_Osmoprotecti 95.1 0.01 2.2E-07 41.0 1.3 28 35-62 25-52 (242)
232 TIGR02525 plasmid_TraJ plasmid 95.1 0.027 5.7E-07 42.5 3.6 37 25-63 139-175 (372)
233 cd03247 ABCC_cytochrome_bd The 95.1 0.01 2.2E-07 39.3 1.2 28 35-62 26-53 (178)
234 PRK14250 phosphate ABC transpo 95.1 0.0096 2.1E-07 41.3 1.1 28 35-62 27-54 (241)
235 PRK13649 cbiO cobalt transport 95.1 0.009 2E-07 42.3 1.0 29 35-63 31-59 (280)
236 PRK08699 DNA polymerase III su 95.1 0.037 8E-07 40.8 4.2 42 24-65 6-49 (325)
237 TIGR00678 holB DNA polymerase 95.1 0.023 4.9E-07 37.8 2.9 36 29-64 5-41 (188)
238 PRK14267 phosphate ABC transpo 95.1 0.015 3.2E-07 40.4 2.0 28 35-62 28-55 (253)
239 COG0563 Adk Adenylate kinase a 95.1 0.014 3.1E-07 39.6 1.9 23 39-61 2-24 (178)
240 cd03270 ABC_UvrA_I The excisio 95.1 0.015 3.2E-07 40.3 2.0 22 35-56 19-40 (226)
241 cd03222 ABC_RNaseL_inhibitor T 95.1 0.0095 2.1E-07 40.4 1.0 30 33-62 21-50 (177)
242 PRK13648 cbiO cobalt transport 95.1 0.01 2.2E-07 41.9 1.2 28 35-62 33-60 (269)
243 PRK08727 hypothetical protein; 95.1 0.026 5.6E-07 39.4 3.2 30 34-63 38-67 (233)
244 TIGR03574 selen_PSTK L-seryl-t 95.1 0.014 3E-07 40.7 1.8 23 40-62 2-24 (249)
245 PRK06645 DNA polymerase III su 95.1 0.024 5.2E-07 44.4 3.3 35 31-65 37-71 (507)
246 cd03232 ABC_PDR_domain2 The pl 95.1 0.014 3.1E-07 39.1 1.9 25 35-59 31-55 (192)
247 cd03244 ABCC_MRP_domain2 Domai 95.1 0.011 2.4E-07 40.1 1.3 29 35-63 28-56 (221)
248 PRK15112 antimicrobial peptide 95.1 0.01 2.2E-07 41.9 1.1 31 35-65 37-67 (267)
249 PRK10463 hydrogenase nickel in 95.0 0.023 5E-07 41.7 3.0 35 29-63 96-130 (290)
250 cd03290 ABCC_SUR1_N The SUR do 95.0 0.016 3.4E-07 39.4 2.0 28 35-62 25-52 (218)
251 PRK13646 cbiO cobalt transport 95.0 0.01 2.2E-07 42.4 1.1 30 35-64 31-60 (286)
252 TIGR01189 ccmA heme ABC export 95.0 0.017 3.6E-07 38.8 2.0 28 35-62 24-51 (198)
253 PRK13548 hmuV hemin importer A 95.0 0.01 2.2E-07 41.6 1.1 29 35-63 26-54 (258)
254 PRK10619 histidine/lysine/argi 95.0 0.01 2.3E-07 41.4 1.1 29 35-63 29-57 (257)
255 PRK13543 cytochrome c biogenes 95.0 0.011 2.3E-07 40.3 1.1 29 35-63 35-63 (214)
256 COG3840 ThiQ ABC-type thiamine 95.0 0.0098 2.1E-07 42.2 0.9 43 16-67 13-55 (231)
257 PRK00440 rfc replication facto 95.0 0.034 7.4E-07 39.2 3.7 35 28-62 29-63 (319)
258 TIGR03771 anch_rpt_ABC anchore 95.0 0.011 2.4E-07 40.5 1.2 28 35-62 4-31 (223)
259 cd03252 ABCC_Hemolysin The ABC 95.0 0.011 2.5E-07 40.5 1.2 28 35-62 26-53 (237)
260 TIGR00958 3a01208 Conjugate Tr 95.0 0.012 2.6E-07 47.0 1.5 31 35-65 505-535 (711)
261 PRK06893 DNA replication initi 95.0 0.034 7.4E-07 38.6 3.6 30 34-63 36-65 (229)
262 PRK14273 phosphate ABC transpo 95.0 0.017 3.6E-07 40.2 2.0 28 35-62 31-58 (254)
263 TIGR03796 NHPM_micro_ABC1 NHPM 95.0 0.011 2.3E-07 46.9 1.2 31 35-65 503-533 (710)
264 PRK09544 znuC high-affinity zi 95.0 0.011 2.3E-07 41.7 1.0 28 35-62 28-55 (251)
265 cd03214 ABC_Iron-Siderophores_ 95.0 0.018 3.8E-07 38.3 2.1 28 35-62 23-50 (180)
266 TIGR02788 VirB11 P-type DNA tr 95.0 0.014 2.9E-07 42.4 1.6 27 36-62 143-169 (308)
267 PRK14274 phosphate ABC transpo 95.0 0.017 3.7E-07 40.3 2.1 27 35-61 36-62 (259)
268 cd03233 ABC_PDR_domain1 The pl 95.0 0.016 3.5E-07 39.2 1.9 28 35-62 31-58 (202)
269 PRK10575 iron-hydroxamate tran 95.0 0.01 2.3E-07 41.7 0.9 28 35-62 35-62 (265)
270 PRK14237 phosphate transporter 95.0 0.017 3.7E-07 40.7 2.1 27 35-61 44-70 (267)
271 PRK14239 phosphate transporter 94.9 0.017 3.7E-07 40.0 2.0 26 35-60 29-54 (252)
272 PRK14958 DNA polymerase III su 94.9 0.038 8.3E-07 43.1 4.1 39 27-65 27-66 (509)
273 KOG0924|consensus 94.9 0.016 3.5E-07 47.7 2.1 37 21-63 358-394 (1042)
274 PRK14240 phosphate transporter 94.9 0.017 3.7E-07 40.0 2.0 27 35-61 27-53 (250)
275 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.011 2.5E-07 40.5 1.1 28 35-62 27-54 (238)
276 PRK14256 phosphate ABC transpo 94.9 0.017 3.8E-07 40.1 2.0 27 35-61 28-54 (252)
277 PRK13764 ATPase; Provisional 94.9 0.027 5.9E-07 45.0 3.3 26 37-62 257-282 (602)
278 COG1126 GlnQ ABC-type polar am 94.9 0.017 3.7E-07 41.5 2.0 24 35-58 26-49 (240)
279 PRK10418 nikD nickel transport 94.9 0.018 3.8E-07 40.2 2.0 28 35-62 27-54 (254)
280 PRK11831 putative ABC transpor 94.9 0.012 2.5E-07 41.6 1.1 28 35-62 31-58 (269)
281 TIGR02533 type_II_gspE general 94.9 0.027 5.8E-07 43.7 3.2 35 27-62 233-267 (486)
282 cd03216 ABC_Carb_Monos_I This 94.9 0.018 3.8E-07 37.9 1.9 28 35-62 24-51 (163)
283 PRK10895 lipopolysaccharide AB 94.9 0.012 2.6E-07 40.6 1.2 28 35-62 27-54 (241)
284 PRK07667 uridine kinase; Provi 94.9 0.017 3.8E-07 39.0 1.9 26 38-63 18-43 (193)
285 PRK09112 DNA polymerase III su 94.9 0.031 6.6E-07 41.7 3.4 39 25-63 32-71 (351)
286 TIGR03411 urea_trans_UrtD urea 94.9 0.012 2.7E-07 40.5 1.2 28 35-62 26-53 (242)
287 COG1132 MdlB ABC-type multidru 94.9 0.013 2.7E-07 45.3 1.4 31 35-65 353-383 (567)
288 PRK14269 phosphate ABC transpo 94.9 0.018 3.9E-07 39.9 2.0 27 35-61 26-52 (246)
289 TIGR02769 nickel_nikE nickel i 94.9 0.012 2.6E-07 41.4 1.1 29 35-63 35-63 (265)
290 TIGR01288 nodI ATP-binding ABC 94.9 0.011 2.5E-07 42.5 1.0 29 35-63 28-56 (303)
291 cd01672 TMPK Thymidine monopho 94.9 0.018 3.9E-07 37.6 1.9 24 40-63 3-26 (200)
292 PRK00698 tmk thymidylate kinas 94.9 0.023 4.9E-07 37.8 2.4 27 37-63 3-29 (205)
293 COG0630 VirB11 Type IV secreto 94.9 0.026 5.6E-07 41.4 2.9 42 21-63 128-169 (312)
294 cd03213 ABCG_EPDR ABCG transpo 94.9 0.019 4.1E-07 38.7 2.0 27 35-61 33-59 (194)
295 PRK11701 phnK phosphonate C-P 94.9 0.012 2.6E-07 41.1 1.0 28 35-62 30-57 (258)
296 PRK14238 phosphate transporter 94.9 0.019 4.1E-07 40.6 2.1 28 35-62 48-75 (271)
297 PRK14270 phosphate ABC transpo 94.8 0.019 4.2E-07 39.8 2.1 27 35-61 28-54 (251)
298 cd03217 ABC_FeS_Assembly ABC-t 94.8 0.019 4.2E-07 38.8 2.0 26 35-60 24-49 (200)
299 PRK14268 phosphate ABC transpo 94.8 0.019 4.1E-07 40.2 2.0 27 35-61 36-62 (258)
300 CHL00131 ycf16 sulfate ABC tra 94.8 0.017 3.8E-07 39.9 1.8 26 35-60 31-56 (252)
301 PRK09984 phosphonate/organopho 94.8 0.019 4.1E-07 40.2 2.0 28 35-62 28-55 (262)
302 cd03228 ABCC_MRP_Like The MRP 94.8 0.021 4.5E-07 37.6 2.1 28 35-62 26-53 (171)
303 PRK14235 phosphate transporter 94.8 0.02 4.3E-07 40.4 2.1 28 35-62 43-70 (267)
304 PRK11160 cysteine/glutathione 94.8 0.013 2.8E-07 45.6 1.2 32 35-66 364-395 (574)
305 PRK10522 multidrug transporter 94.8 0.012 2.6E-07 45.4 1.0 31 35-65 347-377 (547)
306 PRK14241 phosphate transporter 94.8 0.019 4.1E-07 40.1 2.0 28 35-62 28-55 (258)
307 TIGR01188 drrA daunorubicin re 94.8 0.013 2.7E-07 42.2 1.1 31 35-65 17-47 (302)
308 COG1123 ATPase components of v 94.8 0.013 2.8E-07 46.3 1.2 31 35-65 315-345 (539)
309 COG4172 ABC-type uncharacteriz 94.8 0.02 4.4E-07 44.7 2.2 31 34-64 310-340 (534)
310 PRK14265 phosphate ABC transpo 94.8 0.02 4.3E-07 40.6 2.0 27 35-61 44-70 (274)
311 PRK14259 phosphate ABC transpo 94.8 0.02 4.2E-07 40.5 2.0 27 35-61 37-63 (269)
312 cd00879 Sar1 Sar1 subfamily. 94.8 0.03 6.5E-07 36.7 2.8 35 25-59 7-41 (190)
313 PF00625 Guanylate_kin: Guanyl 94.8 0.022 4.7E-07 37.9 2.1 24 38-61 3-26 (183)
314 cd03248 ABCC_TAP TAP, the Tran 94.8 0.015 3.2E-07 39.7 1.3 28 35-62 38-65 (226)
315 PRK13639 cbiO cobalt transport 94.8 0.013 2.8E-07 41.5 1.0 29 35-63 26-54 (275)
316 PRK14262 phosphate ABC transpo 94.8 0.02 4.4E-07 39.6 2.0 27 35-61 27-53 (250)
317 PRK11231 fecE iron-dicitrate t 94.8 0.013 2.9E-07 40.8 1.1 28 35-62 26-53 (255)
318 PRK15056 manganese/iron transp 94.8 0.02 4.4E-07 40.5 2.0 28 35-62 31-58 (272)
319 TIGR00455 apsK adenylylsulfate 94.8 0.038 8.2E-07 36.6 3.2 28 35-62 16-43 (184)
320 PRK14272 phosphate ABC transpo 94.8 0.021 4.5E-07 39.5 2.0 27 35-61 28-54 (252)
321 TIGR02982 heterocyst_DevA ABC 94.7 0.015 3.1E-07 39.7 1.2 28 35-62 29-56 (220)
322 COG0572 Udk Uridine kinase [Nu 94.7 0.019 4.1E-07 40.7 1.8 24 39-62 10-33 (218)
323 PRK09580 sufC cysteine desulfu 94.7 0.019 4.1E-07 39.6 1.8 26 35-60 25-50 (248)
324 cd03115 SRP The signal recogni 94.7 0.025 5.4E-07 37.1 2.2 26 39-64 2-27 (173)
325 PRK14244 phosphate ABC transpo 94.7 0.022 4.7E-07 39.6 2.1 27 35-61 29-55 (251)
326 PRK10253 iron-enterobactin tra 94.7 0.02 4.3E-07 40.3 1.9 28 35-62 31-58 (265)
327 PRK14260 phosphate ABC transpo 94.7 0.022 4.7E-07 39.9 2.0 28 35-62 31-58 (259)
328 PRK14957 DNA polymerase III su 94.7 0.038 8.2E-07 43.7 3.5 37 29-65 29-66 (546)
329 cd03253 ABCC_ATM1_transporter 94.7 0.016 3.4E-07 39.7 1.3 28 35-62 25-52 (236)
330 PF13479 AAA_24: AAA domain 94.7 0.019 4.1E-07 39.5 1.7 22 36-57 2-23 (213)
331 PRK14243 phosphate transporter 94.7 0.022 4.8E-07 40.1 2.1 27 35-61 34-60 (264)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.013 2.9E-07 37.8 0.9 27 35-61 24-50 (144)
333 PF08477 Miro: Miro-like prote 94.7 0.021 4.5E-07 34.6 1.7 20 40-59 2-21 (119)
334 PRK03695 vitamin B12-transport 94.7 0.02 4.3E-07 40.0 1.8 27 35-61 20-46 (248)
335 PLN02165 adenylate isopentenyl 94.7 0.024 5.2E-07 42.4 2.3 33 29-61 35-67 (334)
336 PRK14263 phosphate ABC transpo 94.7 0.022 4.8E-07 40.2 2.0 28 35-62 32-59 (261)
337 PRK13695 putative NTPase; Prov 94.7 0.022 4.8E-07 37.6 1.9 23 40-62 3-25 (174)
338 cd03264 ABC_drug_resistance_li 94.7 0.013 2.9E-07 39.5 0.8 24 39-62 27-50 (211)
339 COG1136 SalX ABC-type antimicr 94.6 0.022 4.7E-07 40.5 1.9 25 35-59 29-53 (226)
340 PRK13631 cbiO cobalt transport 94.6 0.015 3.3E-07 42.5 1.2 30 35-64 50-79 (320)
341 PRK13894 conjugal transfer ATP 94.6 0.022 4.9E-07 42.0 2.0 27 36-62 147-173 (319)
342 cd04155 Arl3 Arl3 subfamily. 94.6 0.036 7.8E-07 35.5 2.8 30 31-60 8-37 (173)
343 cd03251 ABCC_MsbA MsbA is an e 94.6 0.024 5.2E-07 38.8 2.0 28 35-62 26-53 (234)
344 PRK14253 phosphate ABC transpo 94.6 0.024 5.2E-07 39.3 2.1 27 35-61 27-53 (249)
345 PRK14969 DNA polymerase III su 94.6 0.045 9.7E-07 42.8 3.8 38 27-64 27-65 (527)
346 PLN03025 replication factor C 94.6 0.049 1.1E-06 39.4 3.7 36 28-63 25-60 (319)
347 PF14532 Sigma54_activ_2: Sigm 94.6 0.019 4.1E-07 36.7 1.4 27 35-61 19-45 (138)
348 PRK14271 phosphate ABC transpo 94.6 0.024 5.2E-07 40.3 2.0 28 35-62 45-72 (276)
349 PRK11144 modC molybdate transp 94.6 0.015 3.3E-07 42.9 1.1 28 35-62 22-49 (352)
350 PRK07764 DNA polymerase III su 94.6 0.05 1.1E-06 44.8 4.1 36 31-66 31-66 (824)
351 PRK14530 adenylate kinase; Pro 94.6 0.022 4.9E-07 38.8 1.8 24 39-62 5-28 (215)
352 PRK14252 phosphate ABC transpo 94.6 0.024 5.3E-07 39.8 2.0 27 35-61 40-66 (265)
353 cd03288 ABCC_SUR2 The SUR doma 94.6 0.019 4E-07 40.2 1.4 28 35-62 45-72 (257)
354 PRK11614 livF leucine/isoleuci 94.6 0.014 3.1E-07 40.1 0.9 28 35-62 29-56 (237)
355 TIGR01842 type_I_sec_PrtD type 94.6 0.016 3.5E-07 44.6 1.2 31 35-65 342-372 (544)
356 PRK11153 metN DL-methionine tr 94.5 0.015 3.2E-07 42.8 0.9 30 35-64 29-58 (343)
357 PRK13547 hmuV hemin importer A 94.5 0.024 5.3E-07 40.4 2.0 28 35-62 25-52 (272)
358 PF13555 AAA_29: P-loop contai 94.5 0.031 6.7E-07 32.4 2.1 23 39-61 25-47 (62)
359 PRK13652 cbiO cobalt transport 94.5 0.016 3.5E-07 41.1 1.1 30 35-64 28-57 (277)
360 PRK10789 putative multidrug tr 94.5 0.017 3.7E-07 44.8 1.2 31 35-65 339-369 (569)
361 COG1123 ATPase components of v 94.5 0.02 4.4E-07 45.3 1.6 30 35-64 33-62 (539)
362 PRK14254 phosphate ABC transpo 94.5 0.025 5.5E-07 40.4 2.0 27 35-61 63-89 (285)
363 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.027 5.8E-07 36.4 2.0 27 35-61 23-49 (157)
364 PRK14956 DNA polymerase III su 94.5 0.043 9.3E-07 42.9 3.4 38 28-65 30-68 (484)
365 PRK14950 DNA polymerase III su 94.5 0.043 9.3E-07 43.2 3.4 34 32-65 33-66 (585)
366 COG0802 Predicted ATPase or ki 94.5 0.031 6.8E-07 37.6 2.3 29 35-63 23-51 (149)
367 PRK13640 cbiO cobalt transport 94.5 0.023 4.9E-07 40.5 1.7 29 35-63 31-59 (282)
368 TIGR00176 mobB molybdopterin-g 94.5 0.028 6E-07 37.2 2.0 25 40-64 2-26 (155)
369 PRK12608 transcription termina 94.5 0.035 7.5E-07 42.3 2.7 42 22-63 118-159 (380)
370 TIGR03238 dnd_assoc_3 dnd syst 94.5 0.022 4.7E-07 44.8 1.7 21 35-55 30-50 (504)
371 cd03300 ABC_PotA_N PotA is an 94.5 0.018 4E-07 39.6 1.2 29 35-63 24-52 (232)
372 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.5 0.023 4.9E-07 38.3 1.6 26 38-63 39-64 (205)
373 PRK14266 phosphate ABC transpo 94.5 0.028 6E-07 39.0 2.1 27 35-61 27-53 (250)
374 PRK10938 putative molybdenum t 94.4 0.019 4.1E-07 43.6 1.3 29 35-63 27-55 (490)
375 PRK13642 cbiO cobalt transport 94.4 0.019 4E-07 40.8 1.2 30 35-64 31-60 (277)
376 cd02026 PRK Phosphoribulokinas 94.4 0.024 5.2E-07 40.8 1.8 23 40-62 2-24 (273)
377 TIGR03873 F420-0_ABC_ATP propo 94.4 0.026 5.6E-07 39.4 1.9 28 35-62 25-52 (256)
378 PRK14528 adenylate kinase; Pro 94.4 0.03 6.4E-07 37.7 2.1 24 38-61 2-25 (186)
379 KOG0922|consensus 94.4 0.042 9.2E-07 44.5 3.3 32 34-68 63-94 (674)
380 PRK10851 sulfate/thiosulfate t 94.4 0.017 3.8E-07 42.8 1.1 29 35-63 26-54 (353)
381 TIGR02881 spore_V_K stage V sp 94.4 0.037 8E-07 39.0 2.7 29 36-64 41-69 (261)
382 PRK13546 teichoic acids export 94.4 0.027 5.9E-07 40.0 2.0 28 35-62 48-75 (264)
383 TIGR02880 cbbX_cfxQ probable R 94.4 0.032 6.9E-07 40.2 2.3 27 39-65 60-86 (284)
384 PRK14261 phosphate ABC transpo 94.4 0.029 6.2E-07 39.0 2.0 27 35-61 30-56 (253)
385 PRK14275 phosphate ABC transpo 94.4 0.028 6.1E-07 40.2 2.0 26 35-60 63-88 (286)
386 cd01876 YihA_EngB The YihA (En 94.4 0.023 4.9E-07 35.4 1.4 24 40-63 2-27 (170)
387 PRK10261 glutathione transport 94.4 0.018 4E-07 45.4 1.1 30 35-64 40-69 (623)
388 PRK14249 phosphate ABC transpo 94.4 0.029 6.4E-07 38.9 2.1 28 35-62 28-55 (251)
389 PRK08356 hypothetical protein; 94.4 0.022 4.7E-07 38.4 1.4 22 38-59 6-27 (195)
390 PRK15453 phosphoribulokinase; 94.4 0.036 7.7E-07 40.9 2.5 28 35-62 3-30 (290)
391 cd01124 KaiC KaiC is a circadi 94.4 0.028 6.2E-07 36.7 1.9 24 39-62 1-24 (187)
392 cd02029 PRK_like Phosphoribulo 94.3 0.027 5.9E-07 41.3 1.9 24 40-63 2-25 (277)
393 PRK13636 cbiO cobalt transport 94.3 0.019 4.1E-07 40.9 1.1 30 35-64 30-59 (283)
394 TIGR01192 chvA glucan exporter 94.3 0.019 4.1E-07 44.9 1.1 31 35-65 359-389 (585)
395 TIGR00073 hypB hydrogenase acc 94.3 0.046 1E-06 37.1 2.9 34 29-62 14-47 (207)
396 smart00763 AAA_PrkA PrkA AAA d 94.3 0.049 1.1E-06 41.2 3.3 37 35-71 76-112 (361)
397 PRK13650 cbiO cobalt transport 94.3 0.019 4.2E-07 40.8 1.1 30 35-64 31-60 (279)
398 PRK09087 hypothetical protein; 94.3 0.058 1.3E-06 37.7 3.4 33 26-58 31-65 (226)
399 PRK13647 cbiO cobalt transport 94.3 0.021 4.5E-07 40.5 1.2 28 35-62 29-56 (274)
400 TIGR01846 type_I_sec_HlyB type 94.3 0.02 4.4E-07 45.3 1.3 31 35-65 481-511 (694)
401 TIGR00041 DTMP_kinase thymidyl 94.3 0.031 6.6E-07 37.1 1.9 27 37-63 3-29 (195)
402 TIGR02903 spore_lon_C ATP-depe 94.3 0.077 1.7E-06 42.2 4.5 33 30-62 168-200 (615)
403 TIGR01194 cyc_pep_trnsptr cycl 94.3 0.018 4E-07 44.6 1.0 31 35-65 366-396 (555)
404 PRK14952 DNA polymerase III su 94.3 0.064 1.4E-06 42.7 4.0 35 31-65 29-63 (584)
405 PRK10646 ADP-binding protein; 94.3 0.036 7.7E-07 37.3 2.2 28 35-62 26-53 (153)
406 PRK03731 aroL shikimate kinase 94.3 0.033 7.2E-07 36.3 2.1 24 38-61 3-26 (171)
407 cd03283 ABC_MutS-like MutS-lik 94.3 0.027 5.8E-07 38.6 1.7 23 37-59 25-47 (199)
408 TIGR03415 ABC_choXWV_ATP choli 94.3 0.019 4E-07 43.4 1.0 31 35-65 48-78 (382)
409 PRK06761 hypothetical protein; 94.3 0.026 5.6E-07 41.2 1.7 26 38-63 4-29 (282)
410 PHA02544 44 clamp loader, smal 94.3 0.041 8.9E-07 39.2 2.7 28 34-61 40-67 (316)
411 PRK13947 shikimate kinase; Pro 94.2 0.033 7.1E-07 36.2 2.0 23 39-61 3-25 (171)
412 PRK05416 glmZ(sRNA)-inactivati 94.2 0.027 5.9E-07 41.1 1.7 22 37-58 6-27 (288)
413 PLN02348 phosphoribulokinase 94.2 0.051 1.1E-06 41.6 3.2 28 36-63 48-75 (395)
414 PRK11432 fbpC ferric transport 94.2 0.031 6.7E-07 41.5 2.0 29 35-63 30-58 (351)
415 PRK10261 glutathione transport 94.2 0.02 4.4E-07 45.1 1.1 28 35-62 348-375 (623)
416 PRK13635 cbiO cobalt transport 94.2 0.021 4.6E-07 40.7 1.1 29 35-63 31-59 (279)
417 PF13604 AAA_30: AAA domain; P 94.2 0.054 1.2E-06 36.9 3.1 37 26-63 8-44 (196)
418 cd01428 ADK Adenylate kinase ( 94.2 0.029 6.3E-07 36.9 1.7 21 40-60 2-22 (194)
419 PRK10070 glycine betaine trans 94.2 0.019 4.1E-07 43.5 0.9 31 35-65 52-82 (400)
420 PF04665 Pox_A32: Poxvirus A32 94.2 0.031 6.7E-07 40.1 1.9 27 37-63 13-39 (241)
421 PRK02496 adk adenylate kinase; 94.2 0.032 6.9E-07 37.0 1.9 23 39-61 3-25 (184)
422 PRK14245 phosphate ABC transpo 94.2 0.031 6.8E-07 38.7 1.9 26 35-60 27-52 (250)
423 PF03215 Rad17: Rad17 cell cyc 94.2 0.056 1.2E-06 42.4 3.5 36 27-62 34-70 (519)
424 PF12774 AAA_6: Hydrolytic ATP 94.2 0.049 1.1E-06 38.5 2.9 40 23-62 17-57 (231)
425 PRK13634 cbiO cobalt transport 94.2 0.022 4.7E-07 40.8 1.1 29 35-63 31-59 (290)
426 cd03299 ABC_ModC_like Archeal 94.2 0.023 4.9E-07 39.2 1.2 28 35-62 23-50 (235)
427 PRK14236 phosphate transporter 94.2 0.034 7.3E-07 39.3 2.0 27 35-61 49-75 (272)
428 PHA00729 NTP-binding motif con 94.2 0.057 1.2E-06 38.4 3.2 27 36-62 16-42 (226)
429 TIGR02858 spore_III_AA stage I 94.2 0.039 8.4E-07 39.9 2.4 43 22-64 96-138 (270)
430 PF13173 AAA_14: AAA domain 94.1 0.041 8.8E-07 34.7 2.2 26 37-62 2-27 (128)
431 PF07475 Hpr_kinase_C: HPr Ser 94.1 0.03 6.5E-07 38.4 1.7 23 37-59 18-40 (171)
432 PF00158 Sigma54_activat: Sigm 94.1 0.037 7.9E-07 37.2 2.1 25 35-59 20-44 (168)
433 PRK13633 cobalt transporter AT 94.1 0.023 4.9E-07 40.4 1.1 29 35-63 34-62 (280)
434 PRK14965 DNA polymerase III su 94.1 0.078 1.7E-06 41.8 4.2 35 31-65 32-66 (576)
435 TIGR00635 ruvB Holliday juncti 94.1 0.042 9E-07 39.0 2.4 27 35-61 28-54 (305)
436 PRK07994 DNA polymerase III su 94.1 0.076 1.6E-06 42.8 4.0 38 27-64 27-65 (647)
437 PRK14532 adenylate kinase; Pro 94.1 0.035 7.6E-07 36.8 1.9 23 39-61 2-24 (188)
438 PRK04220 2-phosphoglycerate ki 94.1 0.06 1.3E-06 39.8 3.2 27 35-61 90-116 (301)
439 PRK14264 phosphate ABC transpo 94.1 0.036 7.8E-07 40.0 2.0 27 35-61 69-95 (305)
440 COG4172 ABC-type uncharacteriz 94.1 0.04 8.6E-07 43.2 2.3 33 36-68 35-67 (534)
441 PRK11000 maltose/maltodextrin 94.0 0.034 7.5E-07 41.4 2.0 29 35-63 27-55 (369)
442 cd03116 MobB Molybdenum is an 94.0 0.04 8.7E-07 36.8 2.1 27 38-64 2-28 (159)
443 PRK13946 shikimate kinase; Pro 94.0 0.04 8.7E-07 36.9 2.1 26 36-61 9-34 (184)
444 PRK06871 DNA polymerase III su 94.0 0.098 2.1E-06 38.8 4.3 41 26-66 9-53 (325)
445 PRK13644 cbiO cobalt transport 94.0 0.024 5.3E-07 40.2 1.1 28 35-62 26-53 (274)
446 COG4619 ABC-type uncharacteriz 94.0 0.029 6.4E-07 39.5 1.4 31 35-65 27-57 (223)
447 PRK13641 cbiO cobalt transport 94.0 0.023 5E-07 40.6 1.0 29 35-63 31-59 (287)
448 TIGR02142 modC_ABC molybdenum 94.0 0.024 5.1E-07 41.9 1.0 29 35-63 21-49 (354)
449 PRK13637 cbiO cobalt transport 94.0 0.024 5.3E-07 40.5 1.0 29 35-63 31-59 (287)
450 cd01128 rho_factor Transcripti 94.0 0.028 6.1E-07 40.1 1.4 34 29-62 8-41 (249)
451 TIGR00101 ureG urease accessor 94.0 0.035 7.6E-07 38.0 1.8 24 39-62 3-26 (199)
452 TIGR02397 dnaX_nterm DNA polym 94.0 0.058 1.3E-06 38.8 3.0 32 33-64 32-63 (355)
453 PRK13643 cbiO cobalt transport 94.0 0.036 7.9E-07 39.6 1.9 28 35-62 30-57 (288)
454 PF13245 AAA_19: Part of AAA d 94.0 0.071 1.5E-06 31.5 2.9 28 36-63 9-36 (76)
455 PRK13651 cobalt transporter AT 93.9 0.025 5.4E-07 41.1 1.0 30 35-64 31-60 (305)
456 PF01695 IstB_IS21: IstB-like 93.9 0.044 9.5E-07 37.0 2.2 29 35-63 45-73 (178)
457 PRK14955 DNA polymerase III su 93.9 0.052 1.1E-06 40.7 2.8 38 27-64 27-65 (397)
458 TIGR00554 panK_bact pantothena 93.9 0.059 1.3E-06 39.4 3.0 28 35-62 60-87 (290)
459 COG1131 CcmA ABC-type multidru 93.9 0.026 5.6E-07 40.9 1.1 32 35-66 29-60 (293)
460 PRK13537 nodulation ABC transp 93.9 0.025 5.4E-07 41.0 1.0 31 35-65 31-61 (306)
461 cd03243 ABC_MutS_homologs The 93.9 0.076 1.7E-06 35.9 3.3 23 37-59 29-51 (202)
462 TIGR01186 proV glycine betaine 93.9 0.025 5.5E-07 42.3 1.0 31 35-65 17-47 (363)
463 PRK11650 ugpC glycerol-3-phosp 93.9 0.024 5.3E-07 42.1 0.9 31 35-65 28-58 (356)
464 PF12775 AAA_7: P-loop contain 93.9 0.044 9.5E-07 39.4 2.2 26 35-60 31-56 (272)
465 TIGR03499 FlhF flagellar biosy 93.9 0.053 1.2E-06 39.0 2.6 29 36-64 193-221 (282)
466 PTZ00265 multidrug resistance 93.9 0.037 8.1E-07 47.9 2.1 29 35-63 1192-1220(1466)
467 TIGR03269 met_CoM_red_A2 methy 93.9 0.04 8.6E-07 42.2 2.0 27 35-61 24-50 (520)
468 COG1102 Cmk Cytidylate kinase 93.9 0.046 9.9E-07 37.8 2.1 23 40-62 3-25 (179)
469 PRK10982 galactose/methyl gala 93.9 0.024 5.3E-07 43.1 0.9 30 35-64 22-51 (491)
470 TIGR02237 recomb_radB DNA repa 93.8 0.055 1.2E-06 36.4 2.5 27 36-62 11-37 (209)
471 COG1125 OpuBA ABC-type proline 93.8 0.026 5.7E-07 41.7 1.0 29 37-65 27-55 (309)
472 PRK11819 putative ABC transpor 93.8 0.029 6.3E-07 43.6 1.2 28 35-62 31-58 (556)
473 PRK08154 anaerobic benzoate ca 93.8 0.052 1.1E-06 39.5 2.5 30 32-61 128-157 (309)
474 COG3839 MalK ABC-type sugar tr 93.8 0.032 6.9E-07 41.8 1.4 23 37-59 29-51 (338)
475 PF00308 Bac_DnaA: Bacterial d 93.8 0.081 1.8E-06 36.7 3.4 39 25-63 20-60 (219)
476 smart00072 GuKc Guanylate kina 93.8 0.038 8.2E-07 36.9 1.6 23 39-61 4-26 (184)
477 PRK14258 phosphate ABC transpo 93.8 0.045 9.7E-07 38.4 2.0 28 35-62 31-58 (261)
478 PF06414 Zeta_toxin: Zeta toxi 93.8 0.051 1.1E-06 36.7 2.2 28 34-61 12-39 (199)
479 TIGR00231 small_GTP small GTP- 93.7 0.038 8.2E-07 33.6 1.5 21 39-59 3-23 (161)
480 PLN02200 adenylate kinase fami 93.7 0.054 1.2E-06 38.1 2.4 26 36-61 42-67 (234)
481 cd03291 ABCC_CFTR1 The CFTR su 93.7 0.03 6.5E-07 40.3 1.1 27 35-61 61-87 (282)
482 PRK13975 thymidylate kinase; P 93.7 0.044 9.5E-07 36.3 1.9 25 38-62 3-27 (196)
483 TIGR01351 adk adenylate kinase 93.7 0.041 8.8E-07 37.4 1.7 22 40-61 2-23 (210)
484 PRK13549 xylose transporter AT 93.7 0.039 8.4E-07 42.2 1.8 28 35-62 29-56 (506)
485 PRK13949 shikimate kinase; Pro 93.7 0.046 1E-06 36.4 1.9 23 39-61 3-25 (169)
486 PRK14963 DNA polymerase III su 93.7 0.082 1.8E-06 41.3 3.5 34 32-65 31-64 (504)
487 PF13177 DNA_pol3_delta2: DNA 93.7 0.082 1.8E-06 35.0 3.1 37 31-67 13-49 (162)
488 PRK06647 DNA polymerase III su 93.7 0.098 2.1E-06 41.4 4.0 34 32-65 33-66 (563)
489 COG1855 ATPase (PilT family) [ 93.7 0.085 1.8E-06 41.8 3.6 43 21-65 249-291 (604)
490 cd04163 Era Era subfamily. Er 93.7 0.045 9.8E-07 33.8 1.7 24 37-60 3-26 (168)
491 PRK05537 bifunctional sulfate 93.6 0.051 1.1E-06 42.9 2.4 29 35-63 390-418 (568)
492 PRK00279 adk adenylate kinase; 93.6 0.051 1.1E-06 37.1 2.1 23 39-61 2-24 (215)
493 PRK12377 putative replication 93.6 0.069 1.5E-06 38.1 2.8 28 36-63 100-127 (248)
494 PRK14949 DNA polymerase III su 93.6 0.059 1.3E-06 45.2 2.7 37 28-64 28-65 (944)
495 PRK09111 DNA polymerase III su 93.6 0.072 1.6E-06 42.5 3.1 34 32-65 41-74 (598)
496 COG2884 FtsE Predicted ATPase 93.6 0.041 8.9E-07 39.1 1.6 27 36-62 27-53 (223)
497 PF08433 KTI12: Chromatin asso 93.6 0.048 1E-06 39.3 2.0 25 39-63 3-27 (270)
498 PRK10762 D-ribose transporter 93.6 0.031 6.6E-07 42.7 1.0 29 35-63 28-56 (501)
499 cd01983 Fer4_NifH The Fer4_Nif 93.6 0.064 1.4E-06 30.6 2.2 24 40-63 2-25 (99)
500 TIGR02314 ABC_MetN D-methionin 93.5 0.031 6.7E-07 41.5 1.0 29 35-63 29-57 (343)
No 1
>KOG0161|consensus
Probab=99.79 E-value=4.1e-20 Score=156.53 Aligned_cols=64 Identities=55% Similarity=0.616 Sum_probs=59.9
Q ss_pred chhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 2 STRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 2 ~~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+++.+|+.++ ..|||| |+|||+||++|+.+++||||+|+||||||||+++|++++||+.++++.
T Consensus 134 ~v~~~ykgkrr~e~pPHI---favad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~ 199 (1930)
T KOG0161|consen 134 SVVRMYKGKKREEMPPHI---FAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSS 199 (1930)
T ss_pred HHHHHhcccccccCCchH---HHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhcc
Confidence 4678999874 589999 999999999999999999999999999999999999999999999876
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.76 E-value=5.9e-19 Score=146.09 Aligned_cols=64 Identities=38% Similarity=0.558 Sum_probs=58.1
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP 69 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~ 69 (79)
.++.|+.+. ..+||| ||||+.||++|+..++||||||+|||||||||++|++|+||+.+.++..
T Consensus 119 ~i~~Y~~K~r~el~PHv---fAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~ 184 (1463)
T COG5022 119 IIQSYSGKNRLELEPHV---FAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSST 184 (1463)
T ss_pred HHHHhccCccccCCchH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc
Confidence 467788665 478999 9999999999999999999999999999999999999999999886654
No 3
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.75 E-value=9.8e-19 Score=138.26 Aligned_cols=63 Identities=56% Similarity=0.638 Sum_probs=56.7
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP 69 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~ 69 (79)
+..|+... ..|||| |++|++||+.|+..+++|||||+|||||||||++|.+|+||+.+++...
T Consensus 59 ~~~Y~~~~~~~~~PHi---yaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~ 123 (693)
T cd01377 59 VEMYRGKKREEMPPHI---FAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSK 123 (693)
T ss_pred HHHhcCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCC
Confidence 45677644 579999 9999999999999999999999999999999999999999999986653
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.75 E-value=1.1e-18 Score=137.86 Aligned_cols=62 Identities=34% Similarity=0.457 Sum_probs=57.0
Q ss_pred hhhhhhcccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 3 TRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 3 ~~~~y~~~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
.+..|+.....|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++
T Consensus 61 ~~~~y~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~ 122 (677)
T cd01383 61 YIEAYRKKSNDSPHV---YAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG 122 (677)
T ss_pred HHHHhhCCCCCCCCH---HHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC
Confidence 356788777889999 99999999999999999999999999999999999999999988743
No 5
>PTZ00014 myosin-A; Provisional
Probab=99.74 E-value=1.3e-18 Score=139.62 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=54.6
Q ss_pred hhhhhcc---cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 4 RSAYQVY---LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 4 ~~~y~~~---~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+.+|+.. ...|||| |++|++||++|+..++||||||+|||||||||++|++|+||+..++
T Consensus 150 ~~~Y~~~~~~~~lpPHi---favA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~ 212 (821)
T PTZ00014 150 IRRYRDAKDSDKLPPHV---FTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKS 212 (821)
T ss_pred HHHHhCCCCcCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcc
Confidence 5678764 3479999 9999999999999999999999999999999999999999998764
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.74 E-value=1.4e-18 Score=137.28 Aligned_cols=62 Identities=35% Similarity=0.475 Sum_probs=55.5
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus 54 ~~~y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~ 117 (691)
T cd01380 54 IQAYSGQRKGELDPHI---FAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSD 117 (691)
T ss_pred HHHhCCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 45566543 479999 999999999999999999999999999999999999999999988654
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.73 E-value=2.4e-18 Score=136.06 Aligned_cols=61 Identities=28% Similarity=0.338 Sum_probs=54.9
Q ss_pred hhhhhccc---CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQVYL---IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~~~~---~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++..
T Consensus 61 ~~~Y~~~~~~~~lpPHi---y~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~ 124 (692)
T cd01385 61 VRLYENQQRLGKLPPHI---FAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQK 124 (692)
T ss_pred HHHHhcCCCcCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccC
Confidence 45676543 579999 99999999999999999999999999999999999999999988743
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.73 E-value=2.6e-18 Score=135.55 Aligned_cols=61 Identities=33% Similarity=0.477 Sum_probs=55.0
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.+++.
T Consensus 54 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~ 116 (671)
T cd01381 54 IKLYKNKSIGELPPHI---FAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGK 116 (671)
T ss_pred HHHHhcCCccccCCCH---HHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCC
Confidence 45676543 579999 99999999999999999999999999999999999999999988754
No 9
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.73 E-value=2.6e-18 Score=137.14 Aligned_cols=62 Identities=37% Similarity=0.460 Sum_probs=55.6
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+|+||+.+++..
T Consensus 54 ~~~y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~ 117 (767)
T cd01386 54 PSMFRGCKAEDMPPHI---YSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSV 117 (767)
T ss_pred HHHHhcCCcCCCCCCH---HHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCC
Confidence 45677554 579999 999999999999999999999999999999999999999999887543
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.73 E-value=2.7e-18 Score=135.43 Aligned_cols=62 Identities=35% Similarity=0.480 Sum_probs=55.9
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+..|+.+. ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus 54 ~~~Y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~ 117 (674)
T cd01378 54 IELYKGKSRYELPPHI---YALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGG 117 (674)
T ss_pred HHHHhCCCCCCCCCCH---HHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCC
Confidence 45677654 479999 999999999999999999999999999999999999999999887654
No 11
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.72 E-value=2.5e-18 Score=134.84 Aligned_cols=63 Identities=33% Similarity=0.480 Sum_probs=56.1
Q ss_pred hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856 4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP 69 (79)
Q Consensus 4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~ 69 (79)
+..|+.. ...|||| |++|++||+.|+..++||||||+|||||||||++|++++||+.++.+..
T Consensus 53 ~~~y~~~~~~~~~PHi---f~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~ 117 (689)
T PF00063_consen 53 MEKYRGKRRQDLPPHI---FAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSS 117 (689)
T ss_dssp HHHHTTS-GGGS-SSH---HHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSS
T ss_pred hhhhhhhccccccCcc---chhhhcccccccccccccceeeccccccccccchHHHHHHHhhhccccc
Confidence 4567654 4689999 9999999999999999999999999999999999999999999987665
No 12
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.72 E-value=4.3e-18 Score=134.39 Aligned_cols=62 Identities=34% Similarity=0.544 Sum_probs=55.3
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.+++..
T Consensus 56 ~~~y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~ 119 (674)
T cd01384 56 MEQYKGAALGELSPHV---FAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRA 119 (674)
T ss_pred HHHhcCCCcCCCCCCH---HHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCC
Confidence 45666543 479999 999999999999999999999999999999999999999999987543
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.72 E-value=5e-18 Score=133.74 Aligned_cols=61 Identities=41% Similarity=0.544 Sum_probs=55.0
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++
T Consensus 54 ~~~y~~~~~~~~pPHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~ 116 (679)
T cd00124 54 IRKYRGKSRSELPPHV---FAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGS 116 (679)
T ss_pred HHHHhcCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCC
Confidence 45666543 579999 99999999999999999999999999999999999999999988764
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.71 E-value=7.8e-18 Score=133.61 Aligned_cols=61 Identities=36% Similarity=0.390 Sum_probs=54.3
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
+..|+... ..|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+..+++
T Consensus 59 ~~~y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~ 121 (717)
T cd01382 59 IKKYQGKSLGTLPPHV---FAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGS 121 (717)
T ss_pred HHHhhCCCcCcCCCcH---HHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccC
Confidence 45666543 478999 99999999999999999999999999999999999999999987643
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.71 E-value=8.8e-18 Score=132.45 Aligned_cols=62 Identities=44% Similarity=0.584 Sum_probs=55.6
Q ss_pred hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
+..|+.. ...|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus 60 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~ 123 (677)
T smart00242 60 IKKYRGKSRGELPPHV---FAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSN 123 (677)
T ss_pred HHHccCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCC
Confidence 4556654 3579999 999999999999999999999999999999999999999999988654
No 16
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.70 E-value=1e-17 Score=132.29 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=53.6
Q ss_pred hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..|+.. ...|||| |++|++||+.|+..++||||||+|||||||||++|.+++||+.++.
T Consensus 55 ~~~Y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~ 116 (677)
T cd01387 55 VQQYAGRALGENPPHL---FAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQ 116 (677)
T ss_pred HHHhcCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcC
Confidence 4556543 3479999 9999999999999999999999999999999999999999998764
No 17
>KOG0162|consensus
Probab=99.67 E-value=3.5e-17 Score=130.30 Aligned_cols=63 Identities=32% Similarity=0.426 Sum_probs=57.1
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
....||... ..|||| ||+||+.|++|...++||||||+||||+|||+++|++|+|++.+++.+
T Consensus 71 ~~~~YqG~~q~E~pPHi---yAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g 135 (1106)
T KOG0162|consen 71 EMELYQGAAQYENPPHI---YALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGG 135 (1106)
T ss_pred HHHHhhchhhccCCchh---hhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCC
Confidence 467888654 578999 999999999999999999999999999999999999999999988444
No 18
>KOG0164|consensus
Probab=99.67 E-value=4.7e-17 Score=129.21 Aligned_cols=63 Identities=32% Similarity=0.432 Sum_probs=56.3
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
++..|+.+. ..|||+ |||||.||+.|.+..+||||+|+|||||||||+.|++|+|++.+...+
T Consensus 61 ti~kYkgre~yE~~PHl---fAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~ 125 (1001)
T KOG0164|consen 61 TIEKYKGREFYERPPHL---FAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNAS 125 (1001)
T ss_pred HHHHhCCeeecccCchH---HHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCcc
Confidence 456677655 478999 999999999999999999999999999999999999999999887544
No 19
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.62 E-value=4.3e-16 Score=122.77 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=53.4
Q ss_pred hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..|+.. ...|||| |++|+.||+.|+..+++|||+|+|||||||||++|++++||+.++.
T Consensus 54 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~ 115 (653)
T cd01379 54 SRLYTGQKRSSNPPHI---FAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGK 115 (653)
T ss_pred HHhhcCCCCCCCCCcH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcC
Confidence 4566643 3469999 9999999999999999999999999999999999999999998754
No 20
>KOG0163|consensus
Probab=99.49 E-value=2.1e-14 Score=115.13 Aligned_cols=61 Identities=33% Similarity=0.372 Sum_probs=54.5
Q ss_pred hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
+..|+.+. ..|||| |+|||.|||.|..-+.+|+||++||||+||||+.|.+++|||.--++
T Consensus 112 IK~Y~GkSLGq~~PHv---FAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs 174 (1259)
T KOG0163|consen 112 IKEYRGKSLGQLPPHV---FAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS 174 (1259)
T ss_pred HHHhcCCcccCCCCce---eeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC
Confidence 45677654 479999 99999999999999999999999999999999999999999976544
No 21
>KOG0160|consensus
Probab=99.37 E-value=4.5e-13 Score=108.20 Aligned_cols=61 Identities=39% Similarity=0.496 Sum_probs=55.3
Q ss_pred hhhhh-cccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 4 RSAYQ-VYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 4 ~~~y~-~~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
++.|+ ......||+ |++|+.||++|.....+|+|+++||||||||+++|.+++||+.+.++
T Consensus 63 i~~y~~~~~~l~ph~---favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~ 124 (862)
T KOG0160|consen 63 ISAYQAIQGELSPHL---FAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS 124 (862)
T ss_pred HHhhcccccccCcch---hhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence 34566 344678999 99999999999999999999999999999999999999999999877
No 22
>KOG4229|consensus
Probab=99.30 E-value=2.5e-12 Score=105.72 Aligned_cols=51 Identities=39% Similarity=0.546 Sum_probs=49.3
Q ss_pred CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 12 IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 12 ~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..|||| |++|+.+|++|+....+|||+|+||||+|||+.+++++++|+.++
T Consensus 126 e~~phi---fa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Ls 176 (1062)
T KOG4229|consen 126 EDPPHI---FAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILS 176 (1062)
T ss_pred CCCcch---hhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHh
Confidence 467899 999999999999999999999999999999999999999999999
No 23
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.12 E-value=0.00027 Score=43.49 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.8
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998864
No 24
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.04 E-value=0.00093 Score=40.54 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.9
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.......++|.|++|+|||..++.+.+.+.
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3344567899999999999999999998775
No 25
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.04 E-value=0.00032 Score=43.45 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=20.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+...+++|.|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999987754
No 26
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.96 E-value=0.00047 Score=44.78 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
........++|.|++|+|||...+.++..+...
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345667889999999999999999988887655
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=96.92 E-value=0.0006 Score=46.04 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=29.9
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhh
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTK 55 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k 55 (79)
|.....++..++. ..|+||+..|++|+|||++..
T Consensus 9 f~~~~~~v~~~~~-G~n~~i~~yG~tGsGKT~Tm~ 42 (186)
T cd01363 9 FRDVGPLLQSALD-GYNVCIFAYGQTGSGKTYTME 42 (186)
T ss_pred HHHHHHHHHHHhC-CcceeEEEECCCCCcceEecC
Confidence 8888888888885 599999999999999998774
No 28
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.00098 Score=39.86 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.++|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4679999999999999999988776543
No 29
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.72 E-value=0.001 Score=43.87 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.5
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.|+|+|.||||||+..+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 30
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.72 E-value=0.00086 Score=41.02 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|-+|+|||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998875
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.63 E-value=0.0012 Score=40.55 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=21.0
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|.|.+|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999998873
No 32
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.61 E-value=0.0014 Score=44.00 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.|+|.|.||||||+.++.+.+.+-
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 567899999999999999999998763
No 33
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.53 E-value=0.0019 Score=43.78 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+...|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355678999999999999999999887
No 34
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.45 E-value=0.0021 Score=43.72 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+...|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3556788999999999999999987764
No 35
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0021 Score=42.38 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+...|+|.|.+|||||+.++.+.+.|.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999988775
No 36
>PF05729 NACHT: NACHT domain
Probab=96.44 E-value=0.0023 Score=40.52 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.4
Q ss_pred eEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
-++|+|+.|+|||+.++.++..|....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 478999999999999999998887654
No 37
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.44 E-value=0.0021 Score=37.02 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.4
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|.+|+|||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999887
No 38
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.43 E-value=0.0025 Score=41.09 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+...|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887765
No 39
>PRK06762 hypothetical protein; Provisional
Probab=96.42 E-value=0.0023 Score=41.69 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.8
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 40
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.41 E-value=0.0027 Score=42.73 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=24.3
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
-.|+|+|.||||||+.++.+.+.|-..+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999998887543
No 41
>PRK07261 topology modulation protein; Provisional
Probab=96.37 E-value=0.0023 Score=42.71 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|.|.+|+|||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987654
No 42
>PRK08233 hypothetical protein; Provisional
Probab=96.34 E-value=0.0019 Score=42.10 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.3
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|.|+|.+|||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998874
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.34 E-value=0.0053 Score=41.49 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.+........|+|.|++|+|||..++.+.+++.
T Consensus 30 ~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 30 RQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333356678899999999999999999887654
No 44
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.33 E-value=0.0046 Score=43.92 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+.+|.|.|++|+|||...+.+.+.|-..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 578899999999999999999998887644
No 45
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0023 Score=47.53 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++.+.+-|.||||||||..++-++..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 5678899999999999999999999886
No 46
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.28 E-value=0.0032 Score=41.70 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.5
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.|+++|-+|||||+.++.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 47
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.26 E-value=0.0045 Score=42.90 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....++|.|++|+|||+.++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3355789999999999999999887654
No 48
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.25 E-value=0.0027 Score=42.63 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|.|+|.+|||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998876
No 49
>PRK08118 topology modulation protein; Reviewed
Probab=96.23 E-value=0.0031 Score=42.04 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988765
No 50
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.23 E-value=0.0028 Score=42.63 Aligned_cols=23 Identities=52% Similarity=0.651 Sum_probs=20.7
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|+|+.|.|||+..+.+++.|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 79999999999999999999885
No 51
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.22 E-value=0.0047 Score=41.47 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|.|++|||||+..+.++.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356799999999999999999887764
No 52
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.18 E-value=0.0033 Score=42.80 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=22.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.|+|+|.+|||||+..+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4799999999999999999888763
No 53
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.18 E-value=0.0027 Score=42.76 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=21.6
Q ss_pred EEecCCCCCccchhhhhhHHhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|-|+|.||||||+.++.+...|-.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 789999999999999999988863
No 54
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.0071 Score=41.82 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.....|.|.|.+|||||+.++.+...|...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 5677889999999999999999998876544
No 55
>PRK06696 uridine kinase; Validated
Probab=96.17 E-value=0.0053 Score=42.29 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.9
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....-|.|+|.||||||+.++.+.+.|.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566789999999999999999998884
No 56
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.17 E-value=0.0021 Score=49.11 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||||||+..+.++.++....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 6889999999999999999999998776443
No 57
>PF12846 AAA_10: AAA-like domain
Probab=96.17 E-value=0.0038 Score=43.05 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
|..++|.|.+|+|||...+.++..+...+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45678999999999999999988777554
No 58
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.14 E-value=0.0037 Score=39.72 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
...+.++|.|+||+|||++++.++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 346789999999999999999875
No 59
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.11 E-value=0.0043 Score=40.74 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....|+|.|+.|+|||+.+|.+++.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999874
No 60
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.10 E-value=0.0072 Score=43.77 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=27.1
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.......+++|+|++|+|||..++.+++.+..
T Consensus 35 ~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 35 LRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33566789999999999999999999987754
No 61
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.09 E-value=0.0036 Score=38.72 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.0
Q ss_pred EEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
|+|.|++|.|||..++.+++.|....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 67899999999999999998888654
No 62
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.06 E-value=0.0032 Score=41.31 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+-|+|.|.+|+|||+.++.+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5689999999999999999988653
No 63
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.05 E-value=0.0041 Score=41.61 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=20.8
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.+..|+|+|+||+|||+.+..+++
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~ 36 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIK 36 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999877665
No 64
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.04 E-value=0.0041 Score=39.04 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999888765
No 65
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.03 E-value=0.0081 Score=42.93 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++.++.. ..-.|+|+|++|||||+..+.++.++..
T Consensus 72 l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 4444432 3346899999999999999999888753
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0032 Score=43.19 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+.+.|.|++|||||+..+.+...+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 59 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTS 59 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5788999999999999999999887665433
No 67
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.99 E-value=0.0034 Score=48.41 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.|.+.|.|+||+|||+..+.++..+...+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~ 397 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDE 397 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 5789999999999999999999998776544
No 68
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.98 E-value=0.0038 Score=41.80 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.|+|.|.||+|||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999987654
No 69
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.98 E-value=0.0033 Score=39.47 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+++|.+|||||+.++.+.+.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999988554
No 70
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.97 E-value=0.0041 Score=40.14 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999887654
No 71
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.94 E-value=0.0038 Score=39.10 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 35678999999999999999988765543
No 72
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.94 E-value=0.0033 Score=42.51 Aligned_cols=28 Identities=39% Similarity=0.471 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999887654
No 73
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.94 E-value=0.0085 Score=44.42 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=24.9
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.++..+ ..|+|+|..|||||+..+.++.++.
T Consensus 139 ~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 139 SAIDSR--LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444 4599999999999999999998875
No 74
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.93 E-value=0.0035 Score=42.49 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 46789999999999999999998876643
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0029 Score=43.06 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+.-.+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 76
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.92 E-value=0.004 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.093 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|++|||||+..+.++..+...+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s 41 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAPDE 41 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 4578899999999999999999887654333
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.91 E-value=0.0033 Score=42.44 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46888999999999999999998876543
No 78
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.88 E-value=0.0037 Score=41.69 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|||||+..+.+...+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998886554
No 79
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.88 E-value=0.0074 Score=39.73 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...|+|.|.+|+|||+.++.+...|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998875
No 80
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0036 Score=42.34 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..+.+.-.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 81
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.0039 Score=42.06 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788999999999999999998876543
No 82
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.88 E-value=0.0052 Score=41.32 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|.|+|.||||||+.++.+...|.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998875
No 83
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.88 E-value=0.0036 Score=42.45 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|||||+..+.+...+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 84
>PRK06217 hypothetical protein; Validated
Probab=95.87 E-value=0.0047 Score=41.23 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|.|-+|||||+.++.+.+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999988765
No 85
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.85 E-value=0.0055 Score=39.95 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|+|.+|||||+.++.+.+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 86
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.82 E-value=0.0041 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|++.|.+|+|||+.++.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5788999999999999988775
No 87
>PRK06547 hypothetical protein; Provisional
Probab=95.81 E-value=0.0091 Score=40.22 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=24.4
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+......-|+|.|.+|||||+.++.+.+.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 335667788999999999999999987654
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.81 E-value=0.005 Score=42.04 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988776
No 89
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.004 Score=45.66 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|+||+|||+.++.++..+..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 56789999999999999999999887643
No 90
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.012 Score=41.22 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.7
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+...|+|+|-||||||+.+..+-+-|...+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 344567899999999999999988887776544
No 91
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79 E-value=0.0067 Score=37.94 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEecCCCCCccchhhhhhHHhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++|+|.+|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 688999999999999999887764
No 92
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.77 E-value=0.0071 Score=40.72 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=22.1
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+++.|.||.|||++++.+.++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998886
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.77 E-value=0.0044 Score=42.67 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5678999999999999999998876654
No 94
>KOG0925|consensus
Probab=95.77 E-value=0.0098 Score=47.34 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
-+..|..-..||+|++.||.|||||+..-..+
T Consensus 52 k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~ 83 (699)
T KOG0925|consen 52 KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFV 83 (699)
T ss_pred HHHHHHHHhcCceEEEEecCCCCccccCcHHH
Confidence 34445555689999999999999999875543
No 95
>PTZ00301 uridine kinase; Provisional
Probab=95.76 E-value=0.0061 Score=42.44 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
-|.|+|-||||||+.++.+.+.|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 467899999999999998887663
No 96
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.76 E-value=0.0044 Score=45.16 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
.+...+-|.||||+|||+..|.+++..-..++
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46778889999999999999999987665444
No 97
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.73 E-value=0.0077 Score=42.27 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+....|+|+|+.|||||+..+.++.++...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 356789999999999999999999877654
No 98
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.72 E-value=0.0053 Score=39.64 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|.|.||+|||+..+.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999998753
No 99
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.71 E-value=0.013 Score=42.89 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=26.1
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
......+++|+|.+|.|||...+.+++.+..
T Consensus 51 ~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 51 RGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456688999999999999999999987643
No 100
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.71 E-value=0.0045 Score=41.51 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999887654
No 101
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0059 Score=44.66 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||+|||+..+.++..+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 5788899999999999999999988663
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.0088 Score=46.65 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=30.1
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
..++-.|+++|+|..|.|||+.++.+-+.|-|..+.
T Consensus 30 ~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~ 65 (491)
T PRK14964 30 TLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGP 65 (491)
T ss_pred HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCC
Confidence 345678899999999999999999999988765443
No 103
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.0093 Score=40.32 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+...|+|+|.+|+|||+.++.+...|.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667899999999999999999988774
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.005 Score=42.25 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|+|||+..+.+.-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 46788999999999999999998876543
No 105
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.69 E-value=0.0071 Score=39.60 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.5
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|.|.+|||||+.++.+.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999887554
No 106
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.68 E-value=0.0052 Score=41.64 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999887553
No 107
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.67 E-value=0.0055 Score=47.00 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.|.|.|+||+|||+..+.++..+...+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~ 386 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 5789999999999999999999988775443
No 108
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.67 E-value=0.0068 Score=42.17 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|-|.|.+|||||+.++.+...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999998775
No 109
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.66 E-value=0.0049 Score=41.79 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998876553
No 110
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.66 E-value=0.005 Score=42.13 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..+.+...+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46888999999999999999998876643
No 111
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.66 E-value=0.0046 Score=45.43 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||+|||+..+.++..+..
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 56888999999999999999999887653
No 112
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0051 Score=42.45 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999887654
No 113
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.64 E-value=0.0067 Score=38.29 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|.|++|+|||+.++.+.+.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999888766
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.63 E-value=0.0052 Score=41.44 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678899999999999999999886554
No 115
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.62 E-value=0.0047 Score=41.77 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999998876553
No 116
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.62 E-value=0.0063 Score=44.67 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.2
Q ss_pred ceEEecCCCCCccchhhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKV 57 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~ 57 (79)
+-|||+|.||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46899999999999998653
No 117
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.61 E-value=0.0059 Score=46.94 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=27.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||+|||+..+.++..+....
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~ 394 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 6889999999999999999999998776544
No 118
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.0059 Score=44.20 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
.+..++-|.||||||||+.++.++-+.....++
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~ 63 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce
Confidence 578899999999999999999998776654443
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0083 Score=40.84 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999886543
No 120
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.60 E-value=0.0055 Score=41.90 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999886554
No 121
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.60 E-value=0.0057 Score=41.22 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999887654
No 122
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.59 E-value=0.0055 Score=42.26 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|+|||+..+.+...+..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35778999999999999999998876643
No 123
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.59 E-value=0.005 Score=42.17 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999999886554
No 124
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.0086 Score=40.42 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999886543
No 125
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.02 Score=42.35 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 27 PDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 27 Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..++++.. +-.++++|+|+.|.|||+.++.+.+.+.+.
T Consensus 27 ~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 27 AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 34444444 567889999999999999999999988653
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=95.56 E-value=0.0054 Score=41.82 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5788999999999999999999886654
No 127
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.56 E-value=0.0056 Score=47.32 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=25.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
++.+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999999988
No 128
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.55 E-value=0.0057 Score=42.12 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4688999999999999999999886553
No 129
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.54 E-value=0.0057 Score=47.37 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..|.|.|.|+||+|||+..+.++..+...+
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 5789999999999999999999998776544
No 130
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.53 E-value=0.0057 Score=48.29 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..+.+.|.|+||||||+..|.++..+...+|
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 57899999999999999999999988765443
No 131
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.53 E-value=0.0058 Score=41.18 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999998876554
No 132
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.53 E-value=0.0059 Score=41.22 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 133
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.0095 Score=39.51 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999886554
No 134
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.50 E-value=0.019 Score=40.91 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=25.4
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+....++|+|++|+|||+.++.+.+.+.+
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33444447999999999999999998887753
No 135
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.50 E-value=0.0088 Score=38.80 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+....|++.|+-|||||+.+|-+++.|-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999999883
No 136
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.49 E-value=0.0062 Score=41.33 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999876554
No 137
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.49 E-value=0.0087 Score=37.98 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|.+|+|||+.++.+.+.|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988665
No 138
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.006 Score=43.48 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+.+.|.|++|||||+..+.+...+...+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 65 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4678899999999999999999987664433
No 139
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.48 E-value=0.0092 Score=43.46 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|+|+|..|||||+..+.++.++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 457999999999999999999988754
No 140
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.48 E-value=0.007 Score=39.92 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999887654
No 141
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.0066 Score=41.17 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999887654
No 142
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.47 E-value=0.019 Score=39.23 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+..++|+|++|+|||..++.+...+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999998887653
No 143
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.47 E-value=0.0086 Score=43.96 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||+|||+..+.++..+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 5678999999999999999999987764
No 144
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.47 E-value=0.0097 Score=40.86 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999988763
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.024 Score=41.85 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=35.2
Q ss_pred hHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 25 GGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 25 ~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..|+.++.. +-.++++|+|..|.||+..++.+.+.|.|...
T Consensus 9 ~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~ 51 (328)
T PRK05707 9 QSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAP 51 (328)
T ss_pred HHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4677777764 55889999999999999999999999988653
No 146
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.47 E-value=0.0063 Score=47.18 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.|.|.|+||+|||+..+.++..+....
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 5788899999999999999999998776544
No 147
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.46 E-value=0.0063 Score=41.32 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 148
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.0063 Score=41.82 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|||||+..+.+...+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 149
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.0062 Score=41.30 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+ +.+.|.|++|+|||+..+.+.-.+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 8899999999999999999887654
No 150
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.01 Score=40.96 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999886653
No 151
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.0065 Score=40.15 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998876553
No 152
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.44 E-value=0.0062 Score=42.28 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|+|||+.++.+...+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999988876643
No 153
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.44 E-value=0.009 Score=40.76 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=22.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
-.|.|.|.||||||+..+.++..|..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhh
Confidence 35789999999999999999998864
No 154
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.43 E-value=0.0099 Score=40.86 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+++.|.|.+|+|||+..+.+...+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999887654
No 155
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.0082 Score=43.94 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||||||+..+.++..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5678899999999999999999998764
No 156
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.43 E-value=0.0066 Score=41.83 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+...+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876643
No 157
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.42 E-value=0.012 Score=43.45 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=27.1
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+..+.. .....|+|+|.+|||||+..+.++.++.
T Consensus 113 ~l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3444443 3456799999999999999999988764
No 158
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.42 E-value=0.0069 Score=47.99 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.|.|.|+||||||+..+.++..+....
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~ 528 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 5789999999999999999999988765443
No 159
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.41 E-value=0.0071 Score=41.29 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4678999999999999999999887654
No 160
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.0085 Score=40.73 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-.|+|+|.||+||++..+.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998765
No 161
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.0072 Score=42.73 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+++.|.|++|||||+..+.+...+..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999998876643
No 162
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.40 E-value=0.012 Score=39.64 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...++|.|.||+|||+..+.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999887653
No 163
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.0067 Score=41.70 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..+.+.-.+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999887654
No 164
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.01 Score=41.19 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+..+.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567889999999999999999988643
No 165
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.0071 Score=42.51 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 166
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.38 E-value=0.023 Score=39.68 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=24.5
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.......++|.|.+|+|||..++.+...+.
T Consensus 41 ~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 41 RQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344557899999999999999988777655
No 167
>PRK14531 adenylate kinase; Provisional
Probab=95.38 E-value=0.012 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.|+|.|-+|||||+.++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999987665
No 168
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.38 E-value=0.0075 Score=41.09 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876643
No 169
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.0072 Score=40.82 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998886654
No 170
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.38 E-value=0.0071 Score=48.98 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+.|.|.|+||||||+.+|.+........
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5678899999999999999999987765443
No 171
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.37 E-value=0.011 Score=40.96 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5688899999999999999999886654
No 172
>PRK14527 adenylate kinase; Provisional
Probab=95.35 E-value=0.012 Score=39.38 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.+.|++.|.+|||||+.++.+.+.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999998887444
No 173
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.35 E-value=0.0096 Score=40.75 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5788999999999999999998887654
No 174
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.34 E-value=0.0098 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.|++.|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 568999999999999999988766
No 175
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.011 Score=40.91 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.+.+.|.|++|+|||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999999887655
No 176
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.34 E-value=0.0077 Score=40.41 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..+.+.|.|++|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999887654
No 177
>PRK04182 cytidylate kinase; Provisional
Probab=95.34 E-value=0.011 Score=38.38 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.9
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999887543
No 178
>PRK04040 adenylate kinase; Provisional
Probab=95.32 E-value=0.01 Score=40.42 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|+|||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998877
No 179
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.32 E-value=0.0082 Score=42.23 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.+.|.|++|+|||+..+.+...+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5788999999999999999998776543
No 180
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.32 E-value=0.012 Score=40.32 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.....|+|+|.||+|||+..+.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45677899999999999999888754
No 181
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.0077 Score=41.79 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 46789999999999999999998876543
No 182
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.31 E-value=0.0073 Score=40.86 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+...-+++.++|.|.||.|||+..+.++...
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344444456889999999999999999988764
No 183
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.31 E-value=0.0076 Score=42.67 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788999999999999999998876543
No 184
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.30 E-value=0.011 Score=38.89 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|.|.+|||||+.++.+.+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999988765
No 185
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.30 E-value=0.013 Score=38.80 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=25.7
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.....+.|+|.|..|+|||...+.+++.+
T Consensus 12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344445568999999999999999999888765
No 186
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.29 E-value=0.013 Score=43.78 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+..++. ....-|+|+|.+|||||+..+.+++++..
T Consensus 126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344443 35678999999999999999999998864
No 187
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.29 E-value=0.01 Score=37.94 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|.+|||||+.++.+.+.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999887753
No 188
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.29 E-value=0.012 Score=38.49 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.|.|.|.+++|||+.++.++++|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 47899999999999999999999753
No 189
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.28 E-value=0.0082 Score=40.72 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677899999999999999999887654
No 190
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.0084 Score=42.37 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+...+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999988876543
No 191
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.26 E-value=0.0082 Score=40.56 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.....+.|.|++|+|||+..+.+...+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46778899999999999999998876543
No 192
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.26 E-value=0.01 Score=40.73 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6889999999999999998876
No 193
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.25 E-value=0.023 Score=42.68 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.++......+++|.|++|+|||+.++.+.+.+
T Consensus 25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777777899999999999999999887643
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.031 Score=44.02 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.2
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+-.++++|+|+.|.|||+.++.+.+.|.|..
T Consensus 33 ~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 33 KQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3456788899999999999999999999887754
No 195
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.24 E-value=0.012 Score=40.67 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999886553
No 196
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.24 E-value=0.0083 Score=47.45 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.|.|.|+||||||+..+.++..+....
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~ 519 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5789999999999999999999988776544
No 197
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.24 E-value=0.0078 Score=41.42 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999887554
No 198
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.24 E-value=0.0097 Score=44.04 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...|+|+|.+|||||+..+.++.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 45599999999999999999988775
No 199
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.23 E-value=0.014 Score=38.94 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.|+|.|.+|+|||+..+.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987654
No 200
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.23 E-value=0.0083 Score=41.71 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 201
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.23 E-value=0.0093 Score=44.49 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.+|||||+..+.++.++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 456699999999999999999998764
No 202
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.23 E-value=0.013 Score=39.71 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 578899999999999999999887654
No 203
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.0079 Score=42.44 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 46788999999999999999988876543
No 204
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.22 E-value=0.013 Score=40.60 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+.++.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467889999999999999999988755
No 205
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.22 E-value=0.013 Score=41.21 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 578899999999999999999987643
No 206
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.21 E-value=0.0097 Score=43.70 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.6
Q ss_pred eEEecCCCCCccchhhhhh
Q psy17856 39 SILCTGESGAGKTENTKKV 57 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~ 57 (79)
-|||+|.||||||.+.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999998754
No 207
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.011 Score=41.24 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..-|+|+|.||+||++.++.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999998655
No 208
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.20 E-value=0.0086 Score=39.85 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999988876543
No 209
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.0092 Score=40.69 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5678899999999999999999876553
No 210
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.19 E-value=0.038 Score=43.18 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=26.8
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+..+....++.|+|+||+|+|||..++.+.++.
T Consensus 78 ~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 78 KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 333445678999999999999999999987754
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.19 E-value=0.0092 Score=41.27 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999999887654
No 212
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.18 E-value=0.0098 Score=40.04 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5788999999999999999998877553
No 213
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.009 Score=41.04 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46889999999999999999988765543
No 214
>PRK03839 putative kinase; Provisional
Probab=95.18 E-value=0.013 Score=38.74 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.2
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|-+|+|||+.++.+.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987754
No 215
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.18 E-value=0.014 Score=40.43 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999998886553
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.18 E-value=0.011 Score=39.03 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999998887654
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.034 Score=41.19 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=34.6
Q ss_pred hHHHHHhH----hcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 25 GGPDQVYL----SDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 25 ~~Ay~~m~----~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+.+|+.+. .++-.++++|+|..|.||...+..+.++|.|...
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 45666554 3577899999999999999999999999988643
No 218
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.17 E-value=0.009 Score=42.22 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998876554
No 219
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.17 E-value=0.014 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.....+.|.|+||+|||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999999999774
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.014 Score=40.55 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.+.|.|.+|+|||+.++.+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999998764
No 221
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.17 E-value=0.0098 Score=42.16 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=27.5
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
-.+.+.+.|.|++|+|||+..+.+...+...++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 357889999999999999999999887764443
No 222
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.16 E-value=0.0088 Score=40.60 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|++|+|||+..+.+...+...
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 51 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPA 51 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 468889999999999999999998766433
No 223
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.16 E-value=0.011 Score=39.97 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678999999999999999999887654
No 224
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.15 E-value=0.0091 Score=40.32 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 225
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.15 E-value=0.014 Score=39.74 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++.+.+.|.|++|+|||+..+.+.-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999998886553
No 226
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.15 E-value=0.01 Score=40.70 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5688999999999999999998886543
No 227
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.15 E-value=0.0089 Score=45.67 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||+|||+..+.++..+....
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 376 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5788999999999999999999988775443
No 228
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.14 E-value=0.015 Score=39.19 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999998887553
No 229
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.031 Score=44.74 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 27 PDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 27 Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..+..+ ..+-.++++|+|..|.|||+.++.+.+.|.|..
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 334444 456789999999999999999999999987654
No 230
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.014 Score=40.88 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 568889999999999999999988654
No 231
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.01 Score=41.02 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999998876554
No 232
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.12 E-value=0.027 Score=42.52 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=28.4
Q ss_pred hHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 25 GGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 25 ~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+...+.+.. .+-.|+|+|.+|||||+..+.+++++..
T Consensus 139 ~~~~~~l~~--~~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 139 PDLFNSLLP--AAGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred HHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444543 3456899999999999999999998864
No 233
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.11 E-value=0.01 Score=39.27 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678899999999999999998876543
No 234
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.0096 Score=41.26 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998887554
No 235
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.009 Score=42.26 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.037 Score=40.82 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=35.7
Q ss_pred chHHHHHhHh--cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 24 TGGPDQVYLS--DREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 24 a~~Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
-+.+|+.+.. .+-.++++|+|..|.||+..++.+.+.|.|..
T Consensus 6 ~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 6 HQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred cHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 3567777774 57789999999999999999999999998754
No 237
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.10 E-value=0.023 Score=37.85 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 29 QVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 29 ~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.++ ..+-.++++|.|+.|.|||+.++.+.+.+.+.
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3444 44567899999999999999999999988764
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.015 Score=40.38 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678899999999999999998887653
No 239
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.014 Score=39.60 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|.|-|||||++.++.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 240
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.09 E-value=0.015 Score=40.28 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred CCCceEEecCCCCCccchhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKK 56 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~ 56 (79)
.+.+.+.|.|+||||||+....
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~ 40 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFD 40 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 5788999999999999999633
No 241
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.09 E-value=0.0095 Score=40.37 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=24.9
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.-.+...+.|.|.+|+|||+..+.+...+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 335778899999999999999998877654
No 242
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.09 E-value=0.01 Score=41.87 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788899999999999999999887654
No 243
>PRK08727 hypothetical protein; Validated
Probab=95.09 E-value=0.026 Score=39.36 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.6
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....+.|+|.|.+|+|||..+..+...++.
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445677999999999999999888776553
No 244
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.09 E-value=0.014 Score=40.74 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|+|-+|||||+.++.+.++|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988874
No 245
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.024 Score=44.36 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=30.0
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+...+..++++|+|+.|.|||+.++.+.+.|.+..
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 44456689999999999999999999999987754
No 246
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.014 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.+.+.+.|.|.+|+|||+..+.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5678899999999999999998874
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.08 E-value=0.011 Score=40.11 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 46788999999999999999988866543
No 248
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.05 E-value=0.01 Score=41.87 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+.+.|.|++|+|||+..+.+...+...+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~ 67 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 4678899999999999999999887664433
No 249
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.05 E-value=0.023 Score=41.74 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|..+..+.-..|.|+|.+|||||+..+.+++.|..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45555677889999999999999999999987753
No 250
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.05 E-value=0.016 Score=39.39 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5688999999999999999999886654
No 251
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.01 Score=42.41 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|.+|||||+..+.+...+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 568899999999999999999998765433
No 252
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.02 E-value=0.017 Score=38.81 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998887653
No 253
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.02 E-value=0.01 Score=41.65 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+...+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 254
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.02 E-value=0.01 Score=41.39 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876643
No 255
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.02 E-value=0.011 Score=40.32 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+...+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998875543
No 256
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.01 E-value=0.0098 Score=42.22 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=32.6
Q ss_pred ccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 16 HIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 16 hi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
|.++.|+++-.+ .+.+-|.|.||||||+..+.+--|....++.
T Consensus 13 ~~~~~fdl~v~~---------ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~ 55 (231)
T COG3840 13 HLPMRFDLTVPA---------GEIVAILGPSGAGKSTLLNLIAGFETPASGE 55 (231)
T ss_pred cceEEEEEeecC---------CcEEEEECCCCccHHHHHHHHHhccCCCCce
Confidence 445556665543 5677888999999999999999888766643
No 257
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.01 E-value=0.034 Score=39.21 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=26.4
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+..+.......++|+|+.|+|||+.++.+...+.
T Consensus 29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444444445689999999999999999987764
No 258
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.00 E-value=0.011 Score=40.54 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++.+.+.|.|++|+|||+..+.+...+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999999887654
No 259
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.99 E-value=0.011 Score=40.51 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5688899999999999999998886654
No 260
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.99 E-value=0.012 Score=46.98 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||+|||+..+.++..+...+
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 5789999999999999999999998876544
No 261
>PRK06893 DNA replication initiation factor; Validated
Probab=94.99 E-value=0.034 Score=38.58 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+++|.|.+|+|||..+..+...++.
T Consensus 36 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455677899999999999999988876643
No 262
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.98 E-value=0.017 Score=40.23 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4688999999999999999999886654
No 263
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.98 E-value=0.011 Score=46.88 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.|.|.|+||||||+..+.++..+....
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5789999999999999999999988775443
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.98 E-value=0.011 Score=41.65 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998886654
No 265
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.98 E-value=0.018 Score=38.28 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+...+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999988876553
No 266
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.96 E-value=0.014 Score=42.44 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.+|||||+..+.++.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 456899999999999999999887764
No 267
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.017 Score=40.32 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.+.+.|.|++|+|||+..+.+.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 468889999999999999999988654
No 268
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.016 Score=39.23 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4678999999999999999999887654
No 269
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.01 Score=41.70 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999998887553
No 270
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.017 Score=40.69 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 578899999999999999999888755
No 271
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.95 E-value=0.017 Score=40.00 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.+.|.|++|+|||+..+.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46788999999999999999998754
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.038 Score=43.10 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 27 PDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 27 Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+.++++ ..+-.++++|+|..|.|||+.++.+.+.|-|..
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 344444 457788999999999999999999999997654
No 273
>KOG0924|consensus
Probab=94.94 E-value=0.016 Score=47.73 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=26.0
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|++-++- |..-++||.|||.||+|||||+. +-|||..
T Consensus 358 f~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~e 394 (1042)
T KOG0924|consen 358 FACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLYE 394 (1042)
T ss_pred HHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHHh
Confidence 5555433 33347899999999999999986 4455543
No 274
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.017 Score=39.98 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 468889999999999999999987643
No 275
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.94 E-value=0.011 Score=40.53 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999887654
No 276
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.017 Score=40.08 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 568889999999999999999887654
No 277
>PRK13764 ATPase; Provisional
Probab=94.93 E-value=0.027 Score=45.00 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...|+|+|.+|||||+.++.++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45599999999999999999998886
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.93 E-value=0.017 Score=41.51 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+...++|.|.||||||+..|.+-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 356778999999999999887653
No 279
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.93 E-value=0.018 Score=40.25 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999886654
No 280
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.92 E-value=0.012 Score=41.61 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998886654
No 281
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.92 E-value=0.027 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=25.9
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.++.+.. ...-.|+|+|.+|||||+....++..+.
T Consensus 233 ~l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3444443 3334689999999999999998888774
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.92 E-value=0.018 Score=37.88 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998886554
No 283
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.012 Score=40.57 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 284
>PRK07667 uridine kinase; Provisional
Probab=94.91 E-value=0.017 Score=39.03 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
--|.|+|-+|||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36688999999999999999988753
No 285
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.031 Score=41.70 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=31.4
Q ss_pred hHHHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 25 GGPDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 25 ~~Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.......+. .+-.+.++|+|+.|.||++.++.+.++|.+
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344455444 455889999999999999999999999987
No 286
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.91 E-value=0.012 Score=40.46 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 287
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.91 E-value=0.013 Score=45.35 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||||||+..+.+++++-...
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~ 383 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 5788889999999999999999999987633
No 288
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.90 E-value=0.018 Score=39.92 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|||||+..+.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467889999999999999999887654
No 289
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.90 E-value=0.012 Score=41.42 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|+|||+..+.+...+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999988876543
No 290
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.90 E-value=0.011 Score=42.46 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|||||+..+.+.-.+..
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999998876543
No 291
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.89 E-value=0.018 Score=37.58 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.9
Q ss_pred EEecCCCCCccchhhhhhHHhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|+|.|-.|||||+.++.+.+.|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998853
No 292
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.88 E-value=0.023 Score=37.75 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.6
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+-.|+|.|-.|||||+.++.+.+.|..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999998754
No 293
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.88 E-value=0.026 Score=41.42 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=31.6
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+.-.+.||-++.... ..+|+++|+.|+|||+..+.++.+.-.
T Consensus 128 ~~~~~~ayL~~~ie~-~~siii~G~t~sGKTt~lnall~~Ip~ 169 (312)
T COG0630 128 ISPEQAAYLWLAIEA-RKSIIICGGTASGKTTLLNALLDFIPP 169 (312)
T ss_pred CCHHHHHHHHHHHHc-CCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 445556776555543 356999999999999999998877653
No 294
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.87 E-value=0.019 Score=38.70 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999888765
No 295
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.86 E-value=0.012 Score=41.13 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+.++.+.-.+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 296
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.86 E-value=0.019 Score=40.63 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5678899999999999999999987653
No 297
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.019 Score=39.82 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 468899999999999999999988654
No 298
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.84 E-value=0.019 Score=38.76 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.+.|.|++|+|||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999988765
No 299
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.019 Score=40.16 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|||||+..+.+...+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999999988654
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.83 E-value=0.017 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+..+.+.|.|.+|+|||+..+.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56788999999999999999988764
No 301
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.83 E-value=0.019 Score=40.18 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999887654
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.021 Score=37.64 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4688899999999999999988877654
No 303
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.82 E-value=0.02 Score=40.38 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4678899999999999999999887653
No 304
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.82 E-value=0.013 Score=45.61 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..+.+.|.|+||+|||+..+.++.++...++
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 67889999999999999999999988765443
No 305
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.81 E-value=0.012 Score=45.40 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||+|||+..+.++..+....
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~ 377 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQS 377 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5789999999999999999999988765433
No 306
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.019 Score=40.07 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..+.+.-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678899999999999999999887653
No 307
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.81 E-value=0.013 Score=42.20 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|.+|||||+..+.+...+...+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~ 47 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTS 47 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4678899999999999999999887664433
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.80 E-value=0.013 Score=46.32 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=26.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++..++-|.||||||||+..|.++..+...+
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~ 345 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSS 345 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4667788999999999999999998776644
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.80 E-value=0.02 Score=44.73 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.3
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
-++.|++-|.||||||||+....+++.+...
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 4688999999999999999999999877654
No 310
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.02 Score=40.65 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+...+
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567889999999999999999887654
No 311
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.79 E-value=0.02 Score=40.51 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+..+.+...+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567889999999999999999987654
No 312
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.79 E-value=0.03 Score=36.67 Aligned_cols=35 Identities=20% Similarity=0.053 Sum_probs=26.0
Q ss_pred hHHHHHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856 25 GGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 25 ~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.++...|-...+.--|+|.|.+|+|||+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34555554455566789999999999999988763
No 313
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.78 E-value=0.022 Score=37.94 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.3
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-|||+|.||+||++..+.+++-+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998755
No 314
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.77 E-value=0.015 Score=39.67 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5788999999999999999998887653
No 315
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.013 Score=41.55 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999998876543
No 316
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.76 E-value=0.02 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467889999999999999999988654
No 317
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.013 Score=40.79 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678899999999999999999887553
No 318
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.76 E-value=0.02 Score=40.46 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999998876543
No 319
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.76 E-value=0.038 Score=36.64 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..-.|+|+|.+|+|||+.++.+...|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556889999999999999999998874
No 320
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.75 E-value=0.021 Score=39.54 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 468889999999999999999988765
No 321
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.75 E-value=0.015 Score=39.70 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999887653
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.019 Score=40.71 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
-|-|+|-||||||+.++.+...|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999998776
No 323
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.73 E-value=0.019 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+..+.+.|.|.+|+|||+..+.+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46788999999999999999988775
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.73 E-value=0.025 Score=37.06 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.1
Q ss_pred eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+++.|+.|+|||+.+..+...+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999988877643
No 325
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.72 E-value=0.022 Score=39.57 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999887654
No 326
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.02 Score=40.27 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999998876543
No 327
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.022 Score=39.90 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4678899999999999999999987653
No 328
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.038 Score=43.67 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.5
Q ss_pred HHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 29 QVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 29 ~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..++. .+-...++|+|+.|.|||+.++.+.+.|.+..
T Consensus 29 ~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (546)
T PRK14957 29 VHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT 66 (546)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 33444 45667799999999999999999999987643
No 329
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.016 Score=39.73 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678899999999999999999886554
No 330
>PF13479 AAA_24: AAA domain
Probab=94.70 E-value=0.019 Score=39.45 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.5
Q ss_pred CCceEEecCCCCCccchhhhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKV 57 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~ 57 (79)
++..|+|.|++|+|||+.+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5678999999999999988776
No 331
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.022 Score=40.08 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 568899999999999999999988643
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.69 E-value=0.013 Score=37.85 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467888999999999999999887654
No 333
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.69 E-value=0.021 Score=34.63 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.8
Q ss_pred EEecCCCCCccchhhhhhHH
Q psy17856 40 ILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~ 59 (79)
|++.|.+|+|||...+.++.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78899999999999888774
No 334
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.69 E-value=0.02 Score=39.98 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+..+.+...+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467889999999999999999887654
No 335
>PLN02165 adenylate isopentenyltransferase
Probab=94.68 E-value=0.024 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=27.4
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|..+.....|+|.|.+|||||..+..+.+.+
T Consensus 35 ~~~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 35 VAMEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 346677777789999999999999998877765
No 336
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.022 Score=40.15 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+++.|.|++|+|||+..+.+...+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 4688999999999999999998876553
No 337
>PRK13695 putative NTPase; Provisional
Probab=94.67 E-value=0.022 Score=37.55 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|+|++|+|||+.++.+...+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999877654
No 338
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.013 Score=39.52 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.|.|++|+|||+..+.+...+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999887654
No 339
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.65 E-value=0.022 Score=40.55 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
++.-.+.|.|.||||||+....+--
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566789999999999999876543
No 340
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.015 Score=42.47 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|.+|||||+..+.+...+...
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~ 79 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 578899999999999999999988766433
No 341
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.64 E-value=0.022 Score=41.96 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.+|||||+..+.++.++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 456799999999999999999998764
No 342
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.64 E-value=0.036 Score=35.50 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=23.2
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+....+.-.|+|.|.+|+|||+..+.+...
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 333444567899999999999999888753
No 343
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.024 Score=38.77 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4688899999999999999998776553
No 344
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.024 Score=39.25 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999987654
No 345
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.045 Score=42.81 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 27 PDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 27 Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+++. .+-.+.++|+|..|.|||+.++.+.+.|.+.
T Consensus 27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 27 ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444 4667888999999999999999999998764
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=94.60 E-value=0.049 Score=39.45 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.....-..++|.|.+|+|||+.++.+.+.+.+
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345555556667999999999999999999887743
No 347
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.59 E-value=0.019 Score=36.65 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+.-|+|+||.|+||+..++.+..+.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 567779999999999999888776643
No 348
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.59 E-value=0.024 Score=40.33 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678899999999999999999886553
No 349
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.58 E-value=0.015 Score=42.90 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||||||+..+.+.-.+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578899999999999999999887654
No 350
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.05 Score=44.84 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=30.3
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..++-++.+||+|..|.|||+.++.+.+.|.|..+
T Consensus 31 i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~ 66 (824)
T PRK07764 31 LDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 66 (824)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC
Confidence 334577888999999999999999999999987543
No 351
>PRK14530 adenylate kinase; Provisional
Probab=94.58 E-value=0.022 Score=38.83 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|+|.|-+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999887663
No 352
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.58 E-value=0.024 Score=39.75 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 468899999999999999999987654
No 353
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.58 E-value=0.019 Score=40.25 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..+.+.|.|.+|+|||+..+.+...+.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccC
Confidence 5778899999999999999999887654
No 354
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.57 E-value=0.014 Score=40.07 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999988876543
No 355
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.57 E-value=0.016 Score=44.57 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=26.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||+|||+..+.++..+....
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 372 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5788999999999999999999998875444
No 356
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.54 E-value=0.015 Score=42.80 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|++|||||+..+.+...+...
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~ 58 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERPT 58 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 467889999999999999999988766433
No 357
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.54 E-value=0.024 Score=40.39 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999877653
No 358
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.53 E-value=0.031 Score=32.36 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+|+|++|+|||+..-.+.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999886655443
No 359
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.016 Score=41.09 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+...
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 57 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 467889999999999999999988765433
No 360
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.52 E-value=0.017 Score=44.82 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||||||+..+.+...+...+
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~ 369 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSE 369 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 5788999999999999999999988775433
No 361
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.52 E-value=0.02 Score=45.29 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+-|.||||||||+.+..++.++..-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 457788899999999999999999988654
No 362
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.51 E-value=0.025 Score=40.43 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+...+
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999999988655
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.027 Score=36.40 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.+.+.|.|.+|+|||+..+.+...+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988876544
No 364
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.043 Score=42.93 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.++. .+-.++++|+|+.|.|||+.++.+.+.|.+..
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 334444 44567899999999999999999999887643
No 365
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.043 Score=43.24 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.0
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+..++++|+|..|.|||+.++.+.+.|.+..
T Consensus 33 ~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 33 AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3356678899999999999999999999997654
No 366
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.48 E-value=0.031 Score=37.58 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...-.|+++|+-|||||+.+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46778999999999999999999998874
No 367
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.023 Score=40.52 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 46788999999999999999999877643
No 368
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.47 E-value=0.028 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred EEecCCCCCccchhhhhhHHhHhhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
|.|.|.+|+|||+.+..+++.|...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999988643
No 369
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.035 Score=42.27 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=35.7
Q ss_pred ccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 22 DLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 22 aia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+..++...+.--.+.|.++|.|+.|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567777777777789999999999999999999998887654
No 370
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.46 E-value=0.022 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.7
Q ss_pred CCCceEEecCCCCCccchhhh
Q psy17856 35 REDQSILCTGESGAGKTENTK 55 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k 55 (79)
.+.+.|.|+|.||||||+..+
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 578999999999999999998
No 371
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.018 Score=39.57 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+...+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999998876643
No 372
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.45 E-value=0.023 Score=38.29 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.6
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..++|.|.+|+|||...+.++..++.
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 36899999999999999998887775
No 373
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.028 Score=38.96 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 467899999999999999999987643
No 374
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.44 E-value=0.019 Score=43.64 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..+.+.-.+..
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 56789999999999999999998876543
No 375
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.019 Score=40.79 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|.+|+|||+..+.+...+...
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 568899999999999999999988766433
No 376
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.43 E-value=0.024 Score=40.81 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|.|.|.||||||+.++.+...|-
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999887764
No 377
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.43 E-value=0.026 Score=39.39 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999999876553
No 378
>PRK14528 adenylate kinase; Provisional
Probab=94.42 E-value=0.03 Score=37.73 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.|+|.|.+|+|||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999987654
No 379
>KOG0922|consensus
Probab=94.42 E-value=0.042 Score=44.45 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=23.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
-..||.+||.||+|||||+. +-|||...+-+.
T Consensus 63 ve~nqvlIviGeTGsGKSTQ---ipQyL~eaG~~~ 94 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKSTQ---IPQYLAEAGFAS 94 (674)
T ss_pred HHHCCEEEEEcCCCCCcccc---HhHHHHhccccc
Confidence 35799999999999999986 556665444333
No 380
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.42 E-value=0.017 Score=42.81 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|+||||||+..+.+.-.+..
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46789999999999999999998876543
No 381
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.41 E-value=0.037 Score=38.95 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
....++|.|++|+|||+.++.+.+.+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999998877543
No 382
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.41 E-value=0.027 Score=40.04 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+.-.+.
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4688899999999999999999886553
No 383
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.40 E-value=0.032 Score=40.19 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.|+|.|++|+|||..++.+.+.+...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999988888776543
No 384
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.029 Score=39.00 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 467889999999999999999987643
No 385
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.028 Score=40.17 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.+.|.|.+|+|||+..+.+.-.
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56788999999999999999998764
No 386
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.37 E-value=0.023 Score=35.38 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEecCCCCCccchhhhhhH--HhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVI--QYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l--~~l~~ 63 (79)
|++.|.+|+|||+..+.+. .+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~ 27 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR 27 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee
Confidence 6788999999999999998 44443
No 387
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.018 Score=45.39 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=25.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|+||||||+.++.+...+...
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~ 69 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 467889999999999999999999877543
No 388
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.36 E-value=0.029 Score=38.91 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+.++.+...+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678899999999999999999887554
No 389
>PRK08356 hypothetical protein; Provisional
Probab=94.36 E-value=0.022 Score=38.41 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.3
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|+|+|.+||||++.++.+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 390
>PRK15453 phosphoribulokinase; Provisional
Probab=94.35 E-value=0.036 Score=40.87 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++.-.|.|+|-||||||+.++.+.+-|.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455789999999999999998877664
No 391
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.35 E-value=0.028 Score=36.68 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+++|.|++|+|||..+..++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999887776655
No 392
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.34 E-value=0.027 Score=41.27 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEecCCCCCccchhhhhhHHhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999887753
No 393
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.34 E-value=0.019 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|++|+|||+..+.+...+...
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~ 59 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPS 59 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 467899999999999999999988766433
No 394
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.33 E-value=0.019 Score=44.86 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||+|||+..+.++..+...+
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 389 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCCC
Confidence 5789999999999999999999988775443
No 395
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.33 E-value=0.046 Score=37.15 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..+....--.|.|+|-.|+|||+..+.+++.+.
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555556667788999999999999999988753
No 396
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.32 E-value=0.049 Score=41.20 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~ 71 (79)
.+.+.++|.|..|+|||+.++.+.+.|-..+.+..|.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~ 112 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGR 112 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCc
Confidence 3578899999999999999999999888776555553
No 397
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.019 Score=40.80 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|.+|+|||+..+.+...+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 467889999999999999999998776433
No 398
>PRK09087 hypothetical protein; Validated
Probab=94.30 E-value=0.058 Score=37.68 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.0
Q ss_pred HHHHHhHh--cCCCceEEecCCCCCccchhhhhhH
Q psy17856 26 GPDQVYLS--DREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 26 ~Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.||..+.+ ...+..++|.|.+|+|||..++.+.
T Consensus 31 ~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 31 AAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred HHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 35554433 2345569999999999999998765
No 399
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.021 Score=40.53 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5678999999999999999999887654
No 400
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.30 E-value=0.02 Score=45.33 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||+|||+..+.+...+....
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5789999999999999999999988775443
No 401
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.29 E-value=0.031 Score=37.07 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.0
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|+|.|-.|||||+.++.+.+.|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999998865
No 402
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.29 E-value=0.077 Score=42.23 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.....+.++|.|++|+|||+.++.+.....
T Consensus 168 ~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 168 AKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 334455678899999999999999999887653
No 403
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=94.29 E-value=0.018 Score=44.58 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|+||+|||+..+.+..++...+
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5788999999999999999999998775443
No 404
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.29 E-value=0.064 Score=42.69 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.1
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+...+-.++++|+|..|.|||+.++.+.+.|-|..
T Consensus 29 i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 63 (584)
T PRK14952 29 LDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ 63 (584)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 33446677899999999999999999999887654
No 405
>PRK10646 ADP-binding protein; Provisional
Probab=94.28 E-value=0.036 Score=37.26 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+....|++.|+-|+|||+.+|-+++.|.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455789999999999999999999885
No 406
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.28 E-value=0.033 Score=36.32 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.|+|+|-+|+|||+..+.+-+.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987754
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.28 E-value=0.027 Score=38.56 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...++|+|++|+|||+..|.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 36789999999999999998763
No 408
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.28 E-value=0.019 Score=43.37 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|.||||||+..+.+...+...+
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~ 78 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPVSR 78 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 3677899999999999999999988765443
No 409
>PRK06761 hypothetical protein; Provisional
Probab=94.27 E-value=0.026 Score=41.22 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.-|+|+|.+|+|||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46899999999999999999988863
No 410
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.27 E-value=0.041 Score=39.20 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+....++++|++|.|||+.++.+.+.+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3345667779999999999999887754
No 411
>PRK13947 shikimate kinase; Provisional
Probab=94.25 E-value=0.033 Score=36.18 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|.+|+|||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887654
No 412
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.25 E-value=0.027 Score=41.06 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.1
Q ss_pred CceEEecCCCCCccchhhhhhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+-|+|+|.+|||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999998763
No 413
>PLN02348 phosphoribulokinase
Probab=94.24 E-value=0.051 Score=41.59 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+.--|-|.|.||||||+.++.+.+.|-.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445678999999999999999998853
No 414
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.031 Score=41.52 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.||+|||+..+.+.-.+..
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 46788999999999999999988765543
No 415
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.02 Score=45.14 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||||||+..+.++..+.
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~ 375 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVE 375 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4678899999999999999999987664
No 416
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.23 E-value=0.021 Score=40.66 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.+|+|||+..+.+...+..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46788999999999999999988866543
No 417
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.23 E-value=0.054 Score=36.87 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+|.+.++. ..++.++|.|..|+|||+..+.+.+.+..
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45555554 45677889999999999999998887765
No 418
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.22 E-value=0.029 Score=36.91 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEecCCCCCccchhhhhhHHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~ 60 (79)
|+|.|-+|||||+.++.+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888765
No 419
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.019 Score=43.53 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|.||||||+..+.+...+...+
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 4678899999999999999999887664433
No 420
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.22 E-value=0.031 Score=40.08 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+-.|++.|.||||||..++.++.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 346888899999999999999877643
No 421
>PRK02496 adk adenylate kinase; Provisional
Probab=94.22 E-value=0.032 Score=36.96 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|.|.+|||||+.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987654
No 422
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.031 Score=38.74 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.+.|.|.+|||||+..+.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 46788999999999999999998753
No 423
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.20 E-value=0.056 Score=42.44 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=26.3
Q ss_pred HHHHhHhcC-CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 27 PDQVYLSDR-EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 27 Ay~~m~~~~-~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...++... ..+.++|+|.+|+|||++.+.+.+.|-
T Consensus 34 wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 34 WLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444443 356678899999999999999887763
No 424
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=94.20 E-value=0.049 Score=38.49 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=32.9
Q ss_pred cchHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 23 LTGGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 23 ia~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.|++|..|... ..+.+..+.|..|+||||..|.+-+.|.
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 468888877665 6678889999999999999998876553
No 425
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.022 Score=40.83 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++.+.+.|.|.+|+|||+..+.+...+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56789999999999999999998876543
No 426
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.023 Score=39.24 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4688999999999999999988766543
No 427
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.034 Score=39.30 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+..+.+.-.+
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 578899999999999999999987654
No 428
>PHA00729 NTP-binding motif containing protein
Probab=94.16 E-value=0.057 Score=38.39 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.-..|+|+|.+|+|||..+..+...+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999887654
No 429
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.16 E-value=0.039 Score=39.88 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=33.0
Q ss_pred ccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 22 DLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 22 aia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..++.....++..+.-+.++|.|.+|+|||+..+.+...+...
T Consensus 96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 3455555666655555899999999999999999998877643
No 430
>PF13173 AAA_14: AAA domain
Probab=94.14 E-value=0.041 Score=34.65 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++.++|.|..|+|||+..+.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999997765
No 431
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=94.14 E-value=0.03 Score=38.43 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=19.5
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...|+|+|+||+|||+++--+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999998866664
No 432
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.14 E-value=0.037 Score=37.15 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..+..|+|.||+|+||+..++.+-.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 5568899999999999999998876
No 433
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.023 Score=40.40 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46788999999999999999988866543
No 434
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.078 Score=41.85 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.3
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..++-.+.++|+|+.|.|||+.++.+.+.|.|..
T Consensus 32 i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~ 66 (576)
T PRK14965 32 IDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ 66 (576)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence 34445678899999999999999999999987654
No 435
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.09 E-value=0.042 Score=38.99 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.++|+|.+|.|||..++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 445779999999999999999887765
No 436
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.076 Score=42.83 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 27 PDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 27 Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..++++. ++-.+.++|+|..|.|||+.++.+.+.|-|.
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444444 4667788999999999999999999999875
No 437
>PRK14532 adenylate kinase; Provisional
Probab=94.07 E-value=0.035 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|++.|-+|||||+.++.+.+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999887654
No 438
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.07 E-value=0.06 Score=39.79 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.+-.|+|.|-+|+|||+.++.+...|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988877
No 439
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.036 Score=40.01 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|+|||+..+.+.-.+
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 578889999999999999999988654
No 440
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.05 E-value=0.04 Score=43.16 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
....+-+.||||||||..+..+|+.|..-+...
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~ 67 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSPAAAH 67 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCCcccC
Confidence 455688899999999999999999998744433
No 441
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.034 Score=41.38 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.||||||+..+.+.-.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45678999999999999999998876543
No 442
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.05 E-value=0.04 Score=36.78 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.2
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.|.|+|.+|+|||+.++.++..|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999987643
No 443
>PRK13946 shikimate kinase; Provisional
Probab=94.04 E-value=0.04 Score=36.85 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999987765
No 444
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.098 Score=38.83 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHhH----hcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 26 GPDQVYL----SDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 26 ~Ay~~m~----~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
.+|..+. +++-.++++|+|..|.||+..++.+.++|.|...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~ 53 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTP 53 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4454444 3467899999999999999999999999998653
No 445
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.024 Score=40.19 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999999887654
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.01 E-value=0.029 Score=39.50 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+....|.|+|.||+||++..|.+.......+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~ 57 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTS 57 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCC
Confidence 3466799999999999999888776554433
No 447
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.023 Score=40.55 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788999999999999999998876543
No 448
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.00 E-value=0.024 Score=41.87 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.+|||||+..+.+.-.+..
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p 49 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRP 49 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678999999999999999998876543
No 449
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.024 Score=40.51 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46788999999999999999998876543
No 450
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.98 E-value=0.028 Score=40.10 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|..-.+.|.++|.|++|+|||+.++.+...+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3445557899999999999999999998886554
No 451
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.97 E-value=0.035 Score=38.03 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|.|+|..|+|||+..+.+++.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999998765
No 452
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.96 E-value=0.058 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=27.1
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+-.+.++|+|+.|.|||+.++.+.+.|.+.
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34556789999999999999999999888654
No 453
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.036 Score=39.62 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4678999999999999999998886554
No 454
>PF13245 AAA_19: Part of AAA domain
Probab=93.95 E-value=0.071 Score=31.49 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+...+|.|-.|+|||.....++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566777999999999877777776663
No 455
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.025 Score=41.08 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|.+|||||+..+.+.-.+...
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~ 60 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 467889999999999999999988766443
No 456
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.94 E-value=0.044 Score=37.00 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.++|.|.+|.|||..+..+...++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 45788999999999999999888887765
No 457
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.052 Score=40.69 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 27 PDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 27 Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+.++.. +-.++++|+|..|.|||+.++.+.+.|.+.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44555554 567889999999999999999999998774
No 458
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.93 E-value=0.059 Score=39.41 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+....|-|.|-+|||||+.++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556788999999999999987766654
No 459
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.92 E-value=0.026 Score=40.88 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
++.+.+.|.|.+|||||+..|.++..+...++
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G 60 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 45678899999999999999999887765443
No 460
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.91 E-value=0.025 Score=40.98 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|.+|||||+..+.+.-.+...+
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~ 61 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4678899999999999999999987665433
No 461
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.90 E-value=0.076 Score=35.87 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...++|+|.+|+|||+..+.+..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36799999999999999999873
No 462
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.90 E-value=0.025 Score=42.31 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.++|.|.||||||+..+.+...+...+
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~ 47 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA 47 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCCc
Confidence 4678899999999999999999887765433
No 463
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.024 Score=42.08 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+.+.|.|+||+|||+..+.+.-.+...+
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~ 58 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITS 58 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCc
Confidence 3567889999999999999999887654433
No 464
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.89 E-value=0.044 Score=39.42 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
..++.++|.|++|+|||...+.+++-
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HcCCcEEEECCCCCchhHHHHhhhcc
Confidence 35778999999999999999887753
No 465
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.88 E-value=0.053 Score=38.99 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+...|+|.|.+|+|||+++..+..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999998888654
No 466
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.87 E-value=0.037 Score=47.87 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=27.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+..+++.|.|+||||||+..+.+++++..
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 67899999999999999999999999875
No 467
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.85 E-value=0.04 Score=42.25 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467889999999999999999998865
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.046 Score=37.81 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|.|+|.+|||||+.++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 78999999999999999887764
No 469
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.024 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|++|||||+..+.+...+...
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD 51 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 467889999999999999999988766433
No 470
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.84 E-value=0.055 Score=36.35 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.+.|+|++|+|||..+..++...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999876655444
No 471
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.83 E-value=0.026 Score=41.72 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..-+++.|.||||||+..|.+-+.+-..+
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~ 55 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTS 55 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 34467789999999999999887665444
No 472
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.81 E-value=0.029 Score=43.56 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678899999999999999999887654
No 473
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.81 E-value=0.052 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.9
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..-+....|+|+|.+|||||+..+.+.+.|
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334678899999999999999999987543
No 474
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.80 E-value=0.032 Score=41.83 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.9
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.--++|.|.||||||+..+.+--
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999887654
No 475
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.79 E-value=0.081 Score=36.67 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=27.3
Q ss_pred hHHHHHhHhcCC--CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 25 GGPDQVYLSDRE--DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 25 ~~Ay~~m~~~~~--~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+-+.+..... .+.++|.|.+|+|||...+-+...+..
T Consensus 20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344445544422 356899999999999998888776654
No 476
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.77 E-value=0.038 Score=36.91 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|+|.||+||++..+.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998774
No 477
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.045 Score=38.39 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 5788899999999999999999887765
No 478
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.76 E-value=0.051 Score=36.73 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=22.1
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
......|++.|-+|||||+....++..+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 3567889999999999999999988765
No 479
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.74 E-value=0.038 Score=33.56 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||+....++.
T Consensus 3 ki~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999877764
No 480
>PLN02200 adenylate kinase family protein
Probab=93.73 E-value=0.054 Score=38.07 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..-.|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999887654
No 481
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.72 E-value=0.03 Score=40.32 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|+|||+.++.+.-.+
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567889999999999999999887654
No 482
>PRK13975 thymidylate kinase; Provisional
Probab=93.72 E-value=0.044 Score=36.33 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.-|+|.|-.|+|||+.++.+-+.|-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988875
No 483
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.72 E-value=0.041 Score=37.44 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|.|.+|||||+.++.+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887643
No 484
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.039 Score=42.21 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|++|||||+..|.+.-.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999887654
No 485
>PRK13949 shikimate kinase; Provisional
Probab=93.71 E-value=0.046 Score=36.44 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|..|||||+..+.+.+.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999877654
No 486
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.082 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.3
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+-.+.++|+|..|+|||+.++.+.+.+.+..
T Consensus 31 ~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 31 RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3345677889999999999999999999887643
No 487
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.69 E-value=0.082 Score=34.98 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=28.2
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
....+-.++++|.|..|.||++.+..+.+.+.+....
T Consensus 13 ~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 13 IKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp HHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred HHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 3445778999999999999999999999988876544
No 488
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.098 Score=41.37 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=28.8
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
...+-.++++|+|+.|.|||+.++.+.+.|.+..
T Consensus 33 ~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~ 66 (563)
T PRK06647 33 ESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN 66 (563)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 3446677899999999999999999999987653
No 489
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.69 E-value=0.085 Score=41.84 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
|.+++....+|... ...|+|.|..|+|||+.++.+-.|++..+
T Consensus 249 Y~L~dkl~eRL~er--aeGILIAG~PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 249 YGLSDKLKERLEER--AEGILIAGAPGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred cCCCHHHHHHHHhh--hcceEEecCCCCChhHHHHHHHHHHHhcC
Confidence 78899998888874 44699999999999999999999998654
No 490
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.66 E-value=0.045 Score=33.84 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.0
Q ss_pred CceEEecCCCCCccchhhhhhHHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...|++.|.+|+|||+.++.++..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999887653
No 491
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.64 E-value=0.051 Score=42.95 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++...|+|+|.+|||||+.++.+.+.|-.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45568899999999999999999887753
No 492
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.63 E-value=0.051 Score=37.06 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|-+|||||+.++.+.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887655
No 493
>PRK12377 putative replication protein; Provisional
Probab=93.61 E-value=0.069 Score=38.14 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.++|+|.+|+|||..+..+...+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999988874
No 494
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.059 Score=45.15 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.++++. .+-.+++||+|+.|.|||+.++.+.+.|-+.
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 444444 4667788999999999999999999998764
No 495
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.072 Score=42.48 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=29.6
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..++..++++|+|..|.|||+.++.+.+.|.|..
T Consensus 41 ~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 41 ETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3456789999999999999999999999987754
No 496
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.57 E-value=0.041 Score=39.10 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=21.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..-+.++|.||||||+..|.++.-.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 344568899999999999999886443
No 497
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.56 E-value=0.048 Score=39.33 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEecCCCCCccchhhhhhHHhHhh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
-|+|+|-.|||||+.++.+.++|..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 3799999999999999999999876
No 498
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.56 E-value=0.031 Score=42.72 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|||||+..+.+.-.+..
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45788999999999999999998876643
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.56 E-value=0.064 Score=30.55 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEecCCCCCccchhhhhhHHhHhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
|+++|..|+|||+.+..+...|..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999875
No 500
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.55 E-value=0.031 Score=41.46 Aligned_cols=29 Identities=28% Similarity=0.142 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.||||||+..+.+...+..
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788999999999999999998876543
Done!