Query psy17856
Match_columns 79
No_of_seqs 121 out of 1017
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:48:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db1_A Myosin-7; S1DC, cardiac 99.8 4.1E-20 1.4E-24 146.5 4.8 65 3-70 138-204 (783)
2 1kk8_A Myosin heavy chain, str 99.8 5.6E-20 1.9E-24 146.5 4.4 66 3-71 136-203 (837)
3 1w9i_A Myosin II heavy chain; 99.8 6.2E-20 2.1E-24 145.3 4.4 65 3-70 139-205 (770)
4 2ycu_A Non muscle myosin 2C, a 99.8 1.2E-19 4.1E-24 146.4 5.2 66 3-71 113-180 (995)
5 1w7j_A Myosin VA; motor protei 99.8 1E-19 3.6E-24 144.3 4.5 63 3-68 123-187 (795)
6 1lkx_A Myosin IE heavy chain; 99.8 1.1E-19 3.8E-24 142.6 4.1 61 3-66 61-123 (697)
7 1g8x_A Myosin II heavy chain f 99.8 1.5E-19 5.2E-24 146.0 5.0 65 3-70 139-205 (1010)
8 1i84_S Smooth muscle myosin he 99.8 1.8E-19 6.2E-24 146.4 5.3 65 3-70 136-202 (1184)
9 2v26_A Myosin VI; calmodulin-b 99.8 1.8E-19 6.1E-24 142.8 4.6 62 3-67 107-170 (784)
10 4anj_A Unconventional myosin-V 99.8 1.9E-19 6.4E-24 146.1 4.3 63 3-68 111-175 (1052)
11 2dfs_A Myosin-5A; myosin-V, in 99.8 3.7E-19 1.2E-23 144.5 4.3 63 3-68 123-187 (1080)
12 4eun_A Thermoresistant glucoki 97.2 0.00019 6.5E-09 46.9 2.4 33 29-61 21-53 (200)
13 3uie_A Adenylyl-sulfate kinase 97.1 0.00045 1.5E-08 45.1 3.8 34 29-62 17-50 (200)
14 1jbk_A CLPB protein; beta barr 97.0 0.00078 2.7E-08 41.8 4.1 33 31-63 37-69 (195)
15 1zp6_A Hypothetical protein AT 96.9 0.0003 1E-08 44.9 1.8 30 31-60 3-32 (191)
16 2p65_A Hypothetical protein PF 96.8 0.00085 2.9E-08 41.8 3.2 32 32-63 38-69 (187)
17 1kgd_A CASK, peripheral plasma 96.8 0.00055 1.9E-08 44.1 2.1 27 36-62 4-30 (180)
18 3c8u_A Fructokinase; YP_612366 96.8 0.00078 2.7E-08 44.3 2.7 29 35-63 20-48 (208)
19 3bos_A Putative DNA replicatio 96.7 0.0016 5.4E-08 42.2 4.0 33 31-63 46-78 (242)
20 1zuh_A Shikimate kinase; alpha 96.7 0.00074 2.5E-08 42.5 2.2 26 36-61 6-31 (168)
21 3tr0_A Guanylate kinase, GMP k 96.7 0.00077 2.6E-08 43.4 2.2 26 36-61 6-31 (205)
22 1qhx_A CPT, protein (chloramph 96.7 0.00079 2.7E-08 42.5 2.1 25 37-61 3-27 (178)
23 1lvg_A Guanylate kinase, GMP k 96.6 0.00072 2.5E-08 44.4 1.9 26 37-62 4-29 (198)
24 1znw_A Guanylate kinase, GMP k 96.6 0.00084 2.9E-08 44.1 2.1 29 34-62 17-45 (207)
25 3a00_A Guanylate kinase, GMP k 96.6 0.00072 2.5E-08 43.7 1.7 25 38-62 2-26 (186)
26 2j41_A Guanylate kinase; GMP, 96.6 0.00096 3.3E-08 42.9 2.1 26 36-61 5-30 (207)
27 3vaa_A Shikimate kinase, SK; s 96.5 0.0013 4.4E-08 42.8 2.4 26 36-61 24-49 (199)
28 3asz_A Uridine kinase; cytidin 96.5 0.0011 3.7E-08 43.1 2.1 28 35-62 4-31 (211)
29 3ec2_A DNA replication protein 96.5 0.0015 5.2E-08 41.6 2.7 28 36-63 37-64 (180)
30 2eyu_A Twitching motility prot 96.5 0.0022 7.7E-08 44.3 3.7 37 27-64 16-52 (261)
31 1njg_A DNA polymerase III subu 96.5 0.0028 9.5E-08 40.4 4.0 31 33-63 41-71 (250)
32 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.6E-08 43.1 2.0 25 37-61 18-42 (202)
33 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5.1E-08 41.3 2.6 26 36-61 7-32 (175)
34 2kjq_A DNAA-related protein; s 96.5 0.0023 7.9E-08 40.6 3.4 37 26-63 26-62 (149)
35 3tau_A Guanylate kinase, GMP k 96.5 0.0012 4.2E-08 43.4 2.1 28 35-62 6-33 (208)
36 1htw_A HI0065; nucleotide-bind 96.5 0.0013 4.5E-08 42.5 2.1 27 35-61 31-57 (158)
37 3kb2_A SPBC2 prophage-derived 96.4 0.0013 4.3E-08 41.0 2.0 23 39-61 3-25 (173)
38 1m7g_A Adenylylsulfate kinase; 96.4 0.0023 8E-08 41.9 3.3 34 29-62 17-50 (211)
39 2qor_A Guanylate kinase; phosp 96.4 0.0012 4E-08 43.2 1.8 26 36-61 11-36 (204)
40 1ex7_A Guanylate kinase; subst 96.4 0.0011 3.9E-08 44.1 1.7 22 40-61 4-25 (186)
41 2chg_A Replication factor C sm 96.4 0.0033 1.1E-07 39.7 3.8 33 30-62 31-63 (226)
42 1z6g_A Guanylate kinase; struc 96.4 0.0012 4.3E-08 43.9 1.8 27 35-61 21-47 (218)
43 1kag_A SKI, shikimate kinase I 96.4 0.0015 5.1E-08 41.0 1.9 24 38-61 5-28 (173)
44 1s96_A Guanylate kinase, GMP k 96.4 0.0015 5.1E-08 44.1 2.1 27 36-62 15-41 (219)
45 3iij_A Coilin-interacting nucl 96.3 0.0019 6.4E-08 41.1 2.3 26 36-61 10-35 (180)
46 1kht_A Adenylate kinase; phosp 96.3 0.0016 5.6E-08 41.1 1.9 25 38-62 4-28 (192)
47 2pez_A Bifunctional 3'-phospho 96.3 0.0022 7.4E-08 40.8 2.4 27 36-62 4-30 (179)
48 1ye8_A Protein THEP1, hypothet 96.2 0.002 7E-08 42.1 2.2 24 39-62 2-25 (178)
49 2bbw_A Adenylate kinase 4, AK4 96.2 0.0022 7.6E-08 43.0 2.4 26 36-61 26-51 (246)
50 2w58_A DNAI, primosome compone 96.2 0.0053 1.8E-07 39.5 4.1 25 38-62 55-79 (202)
51 1p9r_A General secretion pathw 96.2 0.0033 1.1E-07 46.5 3.5 36 27-63 158-193 (418)
52 2rhm_A Putative kinase; P-loop 96.2 0.0022 7.5E-08 40.7 2.2 25 37-61 5-29 (193)
53 1sq5_A Pantothenate kinase; P- 96.2 0.004 1.4E-07 43.6 3.5 28 35-62 78-105 (308)
54 1nks_A Adenylate kinase; therm 96.1 0.0019 6.4E-08 40.8 1.6 24 39-62 3-26 (194)
55 3lnc_A Guanylate kinase, GMP k 96.1 0.0025 8.4E-08 42.3 2.2 26 36-61 26-52 (231)
56 3tif_A Uncharacterized ABC tra 96.1 0.0011 3.7E-08 45.1 0.4 29 35-63 29-57 (235)
57 1cke_A CK, MSSA, protein (cyti 96.1 0.0028 9.5E-08 41.4 2.3 25 37-61 5-29 (227)
58 3trf_A Shikimate kinase, SK; a 96.1 0.0029 1E-07 40.1 2.3 25 37-61 5-29 (185)
59 2f1r_A Molybdopterin-guanine d 96.1 0.0011 3.6E-08 43.5 0.2 27 38-64 3-29 (171)
60 3aez_A Pantothenate kinase; tr 96.1 0.0045 1.5E-07 43.9 3.4 30 34-63 87-116 (312)
61 1rz3_A Hypothetical protein rb 96.1 0.0033 1.1E-07 41.0 2.6 28 35-62 20-47 (201)
62 2v9p_A Replication protein E1; 96.1 0.0035 1.2E-07 44.7 2.9 28 34-61 123-150 (305)
63 3ney_A 55 kDa erythrocyte memb 96.1 0.0026 8.8E-08 42.9 2.0 27 36-62 18-44 (197)
64 1fnn_A CDC6P, cell division co 96.0 0.006 2E-07 42.4 3.9 29 34-62 39-69 (389)
65 3lw7_A Adenylate kinase relate 96.0 0.0024 8E-08 39.3 1.6 19 39-57 3-21 (179)
66 4gp7_A Metallophosphoesterase; 96.0 0.0034 1.2E-07 40.1 2.4 21 36-56 8-28 (171)
67 2jaq_A Deoxyguanosine kinase; 96.0 0.0028 9.5E-08 40.4 1.9 24 39-62 2-25 (205)
68 2bdt_A BH3686; alpha-beta prot 96.0 0.0028 9.6E-08 40.5 1.9 22 38-59 3-24 (189)
69 1gtv_A TMK, thymidylate kinase 96.0 0.0011 3.7E-08 42.9 -0.1 24 39-62 2-25 (214)
70 1odf_A YGR205W, hypothetical 3 96.0 0.0038 1.3E-07 43.9 2.7 30 34-63 28-57 (290)
71 2yvu_A Probable adenylyl-sulfa 96.0 0.0039 1.3E-07 39.8 2.5 27 36-62 12-38 (186)
72 1d2n_A N-ethylmaleimide-sensit 96.0 0.006 2E-07 41.3 3.5 28 34-61 61-88 (272)
73 1e6c_A Shikimate kinase; phosp 96.0 0.0031 1E-07 39.5 2.0 23 39-61 4-26 (173)
74 3jvv_A Twitching mobility prot 96.0 0.0049 1.7E-07 44.6 3.2 38 26-64 113-150 (356)
75 2qby_B CDC6 homolog 3, cell di 96.0 0.0057 2E-07 42.6 3.5 34 30-63 38-71 (384)
76 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0052 1.8E-07 39.6 3.1 29 35-63 21-49 (235)
77 2pt5_A Shikimate kinase, SK; a 95.9 0.0033 1.1E-07 39.2 2.0 23 39-61 2-24 (168)
78 2ehv_A Hypothetical protein PH 95.9 0.0033 1.1E-07 41.3 2.0 28 35-62 28-55 (251)
79 2jeo_A Uridine-cytidine kinase 95.9 0.0043 1.5E-07 41.7 2.6 27 35-61 23-49 (245)
80 1zd8_A GTP:AMP phosphotransfer 95.9 0.0026 9E-08 42.0 1.6 26 36-61 6-31 (227)
81 3cm0_A Adenylate kinase; ATP-b 95.9 0.0034 1.2E-07 39.7 2.0 25 37-61 4-28 (186)
82 1ofh_A ATP-dependent HSL prote 95.9 0.0046 1.6E-07 41.8 2.7 27 35-61 48-74 (310)
83 3e70_C DPA, signal recognition 95.9 0.0066 2.3E-07 43.5 3.7 31 35-65 127-157 (328)
84 2z0h_A DTMP kinase, thymidylat 95.9 0.0034 1.2E-07 39.9 2.0 23 40-62 3-25 (197)
85 3n70_A Transport activator; si 95.9 0.0033 1.1E-07 39.1 1.9 27 35-61 22-48 (145)
86 2gza_A Type IV secretion syste 95.9 0.0022 7.4E-08 46.2 1.0 29 35-63 173-201 (361)
87 2ewv_A Twitching motility prot 95.9 0.0042 1.4E-07 44.9 2.5 31 34-64 133-163 (372)
88 1via_A Shikimate kinase; struc 95.8 0.0037 1.2E-07 39.6 1.9 23 39-61 6-28 (175)
89 1sxj_E Activator 1 40 kDa subu 95.8 0.0038 1.3E-07 43.3 2.1 24 39-62 38-61 (354)
90 2iyv_A Shikimate kinase, SK; t 95.8 0.0037 1.3E-07 39.7 2.0 23 39-61 4-26 (184)
91 4a74_A DNA repair and recombin 95.8 0.0034 1.2E-07 40.7 1.8 28 35-62 23-50 (231)
92 2vli_A Antibiotic resistance p 95.8 0.0039 1.3E-07 39.3 2.0 25 37-61 5-29 (183)
93 2qt1_A Nicotinamide riboside k 95.8 0.003 1E-07 41.1 1.5 27 35-61 19-45 (207)
94 1mv5_A LMRA, multidrug resista 95.8 0.0023 7.7E-08 43.6 0.9 29 35-63 26-54 (243)
95 2vp4_A Deoxynucleoside kinase; 95.8 0.0034 1.2E-07 41.9 1.7 26 35-60 18-43 (230)
96 1l8q_A Chromosomal replication 95.8 0.0066 2.3E-07 42.0 3.3 28 36-63 36-63 (324)
97 1ly1_A Polynucleotide kinase; 95.8 0.0035 1.2E-07 39.2 1.7 22 38-59 3-24 (181)
98 1gvn_B Zeta; postsegregational 95.8 0.0048 1.6E-07 43.0 2.5 26 36-61 32-57 (287)
99 1rj9_A FTSY, signal recognitio 95.8 0.0058 2E-07 43.3 3.0 29 36-64 101-129 (304)
100 3b9q_A Chloroplast SRP recepto 95.8 0.0057 2E-07 43.2 2.9 29 36-64 99-127 (302)
101 2plr_A DTMP kinase, probable t 95.8 0.004 1.4E-07 39.9 1.9 27 37-63 4-30 (213)
102 2pbr_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 39.3 2.0 23 39-61 2-24 (195)
103 2cbz_A Multidrug resistance-as 95.8 0.0039 1.3E-07 42.4 1.9 28 35-62 29-56 (237)
104 1qf9_A UMP/CMP kinase, protein 95.8 0.0035 1.2E-07 39.5 1.6 24 38-61 7-30 (194)
105 3b85_A Phosphate starvation-in 95.8 0.0073 2.5E-07 40.5 3.2 36 27-66 15-50 (208)
106 3fb4_A Adenylate kinase; psych 95.8 0.0041 1.4E-07 40.4 2.0 22 40-61 3-24 (216)
107 2c95_A Adenylate kinase 1; tra 95.8 0.0048 1.6E-07 39.2 2.2 26 36-61 8-33 (196)
108 1np6_A Molybdopterin-guanine d 95.7 0.0052 1.8E-07 40.3 2.4 26 38-63 7-32 (174)
109 4e22_A Cytidylate kinase; P-lo 95.7 0.005 1.7E-07 41.8 2.4 26 35-60 25-50 (252)
110 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0057 2E-07 40.5 2.6 27 35-61 37-63 (262)
111 1tev_A UMP-CMP kinase; ploop, 95.7 0.0043 1.5E-07 39.1 1.9 24 38-61 4-27 (196)
112 1lv7_A FTSH; alpha/beta domain 95.7 0.0057 2E-07 40.9 2.6 26 36-61 44-69 (257)
113 2cdn_A Adenylate kinase; phosp 95.7 0.0061 2.1E-07 39.4 2.6 28 34-61 17-44 (201)
114 2ff7_A Alpha-hemolysin translo 95.7 0.002 7E-08 44.1 0.2 29 35-63 33-61 (247)
115 2ghi_A Transport protein; mult 95.6 0.0045 1.5E-07 42.7 1.9 28 35-62 44-71 (260)
116 4fcw_A Chaperone protein CLPB; 95.6 0.0066 2.2E-07 41.3 2.7 26 37-62 47-72 (311)
117 1nn5_A Similar to deoxythymidy 95.6 0.0058 2E-07 39.4 2.3 27 36-62 8-34 (215)
118 2bwj_A Adenylate kinase 5; pho 95.6 0.0042 1.4E-07 39.6 1.6 25 37-61 12-36 (199)
119 3tlx_A Adenylate kinase 2; str 95.6 0.011 3.8E-07 39.8 3.7 27 35-61 27-53 (243)
120 2ixe_A Antigen peptide transpo 95.6 0.0027 9.1E-08 44.2 0.6 28 35-62 43-70 (271)
121 2i3b_A HCR-ntpase, human cance 95.6 0.0062 2.1E-07 40.2 2.4 25 38-62 2-26 (189)
122 2zu0_C Probable ATP-dependent 95.6 0.0055 1.9E-07 42.4 2.2 26 35-60 44-69 (267)
123 2wwf_A Thymidilate kinase, put 95.6 0.0055 1.9E-07 39.5 2.0 26 37-62 10-35 (212)
124 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0054 1.8E-07 41.9 2.1 26 35-60 27-52 (250)
125 1b0u_A Histidine permease; ABC 95.6 0.0028 9.7E-08 43.8 0.6 29 35-63 30-58 (262)
126 3cr8_A Sulfate adenylyltranfer 95.6 0.0077 2.6E-07 46.1 3.0 28 35-62 367-394 (552)
127 3dl0_A Adenylate kinase; phosp 95.5 0.0046 1.6E-07 40.3 1.6 22 40-61 3-24 (216)
128 2qby_A CDC6 homolog 1, cell di 95.5 0.0062 2.1E-07 42.0 2.3 30 34-63 42-71 (386)
129 2v1u_A Cell division control p 95.5 0.0062 2.1E-07 42.1 2.2 30 34-63 41-70 (387)
130 3nh6_A ATP-binding cassette SU 95.5 0.0019 6.3E-08 46.1 -0.5 30 35-64 78-107 (306)
131 3b9p_A CG5977-PA, isoform A; A 95.5 0.0071 2.4E-07 41.1 2.4 26 36-61 53-78 (297)
132 3ake_A Cytidylate kinase; CMP 95.5 0.0066 2.3E-07 38.9 2.2 23 39-61 4-26 (208)
133 3syl_A Protein CBBX; photosynt 95.5 0.011 3.6E-07 40.3 3.3 31 34-64 64-94 (309)
134 2olj_A Amino acid ABC transpor 95.5 0.0055 1.9E-07 42.6 1.9 29 35-63 48-76 (263)
135 1uf9_A TT1252 protein; P-loop, 95.5 0.0061 2.1E-07 38.9 1.9 25 36-60 7-31 (203)
136 1g6h_A High-affinity branched- 95.5 0.0027 9.1E-08 43.7 0.2 29 35-63 31-59 (257)
137 2pcj_A ABC transporter, lipopr 95.5 0.0045 1.5E-07 41.7 1.3 28 35-62 28-55 (224)
138 4g1u_C Hemin import ATP-bindin 95.5 0.0027 9.3E-08 44.1 0.2 29 35-63 35-63 (266)
139 2og2_A Putative signal recogni 95.4 0.0088 3E-07 43.5 2.9 29 36-64 156-184 (359)
140 2p5t_B PEZT; postsegregational 95.4 0.0057 2E-07 41.4 1.8 26 36-61 31-56 (253)
141 2onk_A Molybdate/tungstate ABC 95.4 0.0064 2.2E-07 41.6 2.0 28 35-63 23-50 (240)
142 2yz2_A Putative ABC transporte 95.4 0.006 2E-07 42.1 1.9 28 35-62 31-58 (266)
143 2v54_A DTMP kinase, thymidylat 95.4 0.0069 2.4E-07 38.8 2.1 25 37-61 4-28 (204)
144 3gfo_A Cobalt import ATP-bindi 95.4 0.0028 9.6E-08 44.4 0.2 29 35-63 32-60 (275)
145 2pze_A Cystic fibrosis transme 95.4 0.0028 9.6E-08 42.8 0.2 28 35-62 32-59 (229)
146 3co5_A Putative two-component 95.4 0.0045 1.5E-07 38.5 1.1 26 35-60 25-50 (143)
147 3nwj_A ATSK2; P loop, shikimat 95.4 0.0072 2.4E-07 41.7 2.2 25 37-61 48-72 (250)
148 3h4m_A Proteasome-activating n 95.4 0.0082 2.8E-07 40.5 2.4 27 35-61 49-75 (285)
149 1ixz_A ATP-dependent metallopr 95.4 0.0072 2.4E-07 40.4 2.1 25 37-61 49-73 (254)
150 1vpl_A ABC transporter, ATP-bi 95.4 0.0064 2.2E-07 42.0 1.9 28 35-62 39-66 (256)
151 3uk6_A RUVB-like 2; hexameric 95.3 0.014 4.6E-07 40.7 3.5 26 37-62 70-95 (368)
152 1xjc_A MOBB protein homolog; s 95.3 0.0077 2.6E-07 39.7 2.1 27 38-64 5-31 (169)
153 1y63_A LMAJ004144AAA protein; 95.3 0.0088 3E-07 38.4 2.4 25 36-60 9-33 (184)
154 1zak_A Adenylate kinase; ATP:A 95.3 0.0059 2E-07 40.1 1.6 24 38-61 6-29 (222)
155 1ukz_A Uridylate kinase; trans 95.3 0.0083 2.8E-07 38.6 2.3 26 36-61 14-39 (203)
156 1jr3_A DNA polymerase III subu 95.3 0.017 5.7E-07 40.0 4.0 31 33-63 34-64 (373)
157 3pvs_A Replication-associated 95.3 0.011 3.8E-07 43.8 3.1 36 26-61 39-74 (447)
158 3te6_A Regulatory protein SIR3 95.3 0.011 3.6E-07 42.5 2.9 36 28-63 36-71 (318)
159 2bjv_A PSP operon transcriptio 95.3 0.0064 2.2E-07 40.9 1.7 27 35-61 27-53 (265)
160 1sgw_A Putative ABC transporte 95.3 0.0058 2E-07 41.3 1.4 28 35-62 33-60 (214)
161 3sop_A Neuronal-specific septi 95.3 0.0062 2.1E-07 42.3 1.6 28 39-66 4-31 (270)
162 1ji0_A ABC transporter; ATP bi 95.3 0.0069 2.3E-07 41.2 1.7 29 35-63 30-58 (240)
163 2yhs_A FTSY, cell division pro 95.3 0.011 3.8E-07 45.2 3.0 29 36-64 292-320 (503)
164 1iqp_A RFCS; clamp loader, ext 95.2 0.016 5.6E-07 39.2 3.5 34 29-62 38-71 (327)
165 1nij_A Hypothetical protein YJ 95.2 0.0072 2.5E-07 42.5 1.8 24 38-61 5-28 (318)
166 1sxj_D Activator 1 41 kDa subu 95.2 0.014 4.9E-07 40.1 3.3 36 28-63 49-84 (353)
167 3tqf_A HPR(Ser) kinase; transf 95.2 0.0072 2.5E-07 40.8 1.7 24 36-59 15-38 (181)
168 2if2_A Dephospho-COA kinase; a 95.2 0.006 2.1E-07 39.3 1.2 21 39-59 3-23 (204)
169 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 38.8 2.5 25 37-61 4-28 (220)
170 2nq2_C Hypothetical ABC transp 95.2 0.0037 1.3E-07 43.0 0.2 28 35-62 29-56 (253)
171 1sxj_C Activator 1 40 kDa subu 95.2 0.018 6.2E-07 40.2 3.7 32 31-62 40-71 (340)
172 2r62_A Cell division protease 95.2 0.0077 2.6E-07 40.4 1.7 27 35-61 42-68 (268)
173 2ihy_A ABC transporter, ATP-bi 95.2 0.0038 1.3E-07 43.7 0.2 30 35-64 45-74 (279)
174 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.0055 1.9E-07 43.6 1.0 28 36-63 170-197 (330)
175 3cf0_A Transitional endoplasmi 95.1 0.01 3.5E-07 41.1 2.4 27 35-61 47-73 (301)
176 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.0097 3.3E-07 40.5 2.2 25 38-62 5-29 (260)
177 2oap_1 GSPE-2, type II secreti 95.1 0.0059 2E-07 46.2 1.2 27 36-62 259-285 (511)
178 1a7j_A Phosphoribulokinase; tr 95.1 0.013 4.5E-07 40.9 2.9 26 37-62 5-30 (290)
179 1cr0_A DNA primase/helicase; R 95.1 0.011 3.8E-07 40.4 2.5 31 34-64 32-62 (296)
180 2ze6_A Isopentenyl transferase 95.1 0.0088 3E-07 40.7 1.9 23 39-61 3-25 (253)
181 2chq_A Replication factor C sm 95.1 0.012 4.1E-07 39.7 2.6 29 34-62 35-63 (319)
182 2qi9_C Vitamin B12 import ATP- 95.1 0.0083 2.8E-07 41.3 1.7 28 35-62 24-51 (249)
183 1e4v_A Adenylate kinase; trans 95.1 0.0082 2.8E-07 39.3 1.6 23 39-61 2-24 (214)
184 1hqc_A RUVB; extended AAA-ATPa 95.0 0.011 3.6E-07 40.5 2.2 27 35-61 36-62 (324)
185 1iy2_A ATP-dependent metallopr 95.0 0.011 3.8E-07 40.2 2.1 25 37-61 73-97 (278)
186 2xb4_A Adenylate kinase; ATP-b 95.0 0.011 3.6E-07 39.3 1.9 23 39-61 2-24 (223)
187 1g8f_A Sulfate adenylyltransfe 94.9 0.033 1.1E-06 42.3 4.8 28 36-63 394-421 (511)
188 1sxj_B Activator 1 37 kDa subu 94.9 0.027 9.1E-07 38.1 3.9 33 30-62 35-67 (323)
189 1vht_A Dephospho-COA kinase; s 94.9 0.0086 2.9E-07 39.1 1.4 22 38-59 5-26 (218)
190 3pfi_A Holliday junction ATP-d 94.9 0.019 6.5E-07 39.7 3.2 27 35-61 53-79 (338)
191 2cvh_A DNA repair and recombin 94.9 0.013 4.4E-07 37.7 2.2 33 27-59 8-42 (220)
192 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.012 4.2E-07 43.9 2.3 33 34-66 135-167 (460)
193 3rlf_A Maltose/maltodextrin im 94.9 0.012 4E-07 43.3 2.2 30 35-64 27-56 (381)
194 4eaq_A DTMP kinase, thymidylat 94.8 0.016 5.5E-07 39.0 2.6 28 36-63 25-52 (229)
195 1in4_A RUVB, holliday junction 94.8 0.016 5.5E-07 40.7 2.7 26 36-61 50-75 (334)
196 1jjv_A Dephospho-COA kinase; P 94.8 0.011 3.7E-07 38.2 1.6 21 39-59 4-24 (206)
197 2hf9_A Probable hydrogenase ni 94.8 0.022 7.5E-07 36.9 3.1 33 29-61 30-62 (226)
198 1w5s_A Origin recognition comp 94.8 0.027 9.2E-07 39.4 3.7 29 35-63 48-78 (412)
199 2pjz_A Hypothetical protein ST 94.8 0.0062 2.1E-07 42.3 0.4 25 37-61 30-54 (263)
200 2z4s_A Chromosomal replication 94.8 0.024 8.1E-07 41.6 3.5 27 37-63 130-156 (440)
201 1g8p_A Magnesium-chelatase 38 94.7 0.015 5E-07 40.1 2.2 27 36-62 44-70 (350)
202 3b5x_A Lipid A export ATP-bind 94.7 0.0092 3.1E-07 45.2 1.2 31 35-65 367-397 (582)
203 2gks_A Bifunctional SAT/APS ki 94.7 0.024 8.2E-07 43.1 3.5 48 12-62 346-397 (546)
204 2bbs_A Cystic fibrosis transme 94.7 0.011 3.7E-07 41.6 1.5 28 35-62 62-89 (290)
205 1um8_A ATP-dependent CLP prote 94.7 0.015 5E-07 41.2 2.2 26 36-61 71-96 (376)
206 1vma_A Cell division protein F 94.7 0.02 6.9E-07 40.6 2.9 28 36-63 103-130 (306)
207 1lw7_A Transcriptional regulat 94.7 0.011 3.9E-07 42.0 1.6 29 37-65 170-198 (365)
208 1m8p_A Sulfate adenylyltransfe 94.6 0.018 6.2E-07 44.1 2.8 28 35-62 394-421 (573)
209 1n0w_A DNA repair protein RAD5 94.6 0.015 5.2E-07 37.9 2.0 34 27-60 12-47 (243)
210 3tui_C Methionine import ATP-b 94.6 0.015 5.3E-07 42.5 2.2 29 35-63 52-80 (366)
211 2dpy_A FLII, flagellum-specifi 94.6 0.018 6.1E-07 42.7 2.5 44 19-62 139-182 (438)
212 1ojl_A Transcriptional regulat 94.6 0.014 4.8E-07 40.8 1.9 27 35-61 23-49 (304)
213 1svm_A Large T antigen; AAA+ f 94.6 0.026 9E-07 41.2 3.4 38 24-61 155-193 (377)
214 2yl4_A ATP-binding cassette SU 94.6 0.0086 2.9E-07 45.5 0.8 30 35-64 368-397 (595)
215 2qm8_A GTPase/ATPase; G protei 94.6 0.026 9E-07 40.1 3.3 30 34-63 52-81 (337)
216 3fvq_A Fe(3+) IONS import ATP- 94.6 0.014 4.7E-07 42.6 1.8 30 35-64 28-57 (359)
217 2yyz_A Sugar ABC transporter, 94.6 0.016 5.5E-07 42.1 2.2 29 35-63 27-55 (359)
218 1uj2_A Uridine-cytidine kinase 94.5 0.018 6E-07 38.8 2.2 26 37-62 22-47 (252)
219 2it1_A 362AA long hypothetical 94.5 0.017 5.7E-07 42.1 2.2 29 35-63 27-55 (362)
220 3kta_A Chromosome segregation 94.5 0.014 4.7E-07 36.9 1.6 24 38-61 27-50 (182)
221 1ak2_A Adenylate kinase isoenz 94.5 0.022 7.6E-07 37.8 2.6 26 36-61 15-40 (233)
222 3qf4_B Uncharacterized ABC tra 94.4 0.011 3.7E-07 45.1 1.1 30 35-64 379-408 (598)
223 3hws_A ATP-dependent CLP prote 94.4 0.018 6.3E-07 40.6 2.2 26 36-61 50-75 (363)
224 3be4_A Adenylate kinase; malar 94.4 0.015 5E-07 38.3 1.6 24 38-61 6-29 (217)
225 1v43_A Sugar-binding transport 94.4 0.018 6.2E-07 42.0 2.2 29 35-63 35-63 (372)
226 3eie_A Vacuolar protein sortin 94.4 0.024 8.1E-07 39.5 2.7 26 36-61 50-75 (322)
227 1q3t_A Cytidylate kinase; nucl 94.4 0.025 8.6E-07 37.6 2.7 27 35-61 14-40 (236)
228 4a82_A Cystic fibrosis transme 94.4 0.0072 2.5E-07 45.8 -0.0 31 35-65 365-395 (578)
229 1z47_A CYSA, putative ABC-tran 94.3 0.018 6.1E-07 41.9 2.1 29 35-63 39-67 (355)
230 3b60_A Lipid A export ATP-bind 94.3 0.0084 2.9E-07 45.4 0.3 31 35-65 367-397 (582)
231 3d8b_A Fidgetin-like protein 1 94.3 0.021 7.3E-07 40.5 2.4 27 35-61 115-141 (357)
232 3r20_A Cytidylate kinase; stru 94.3 0.018 6.2E-07 39.5 1.9 25 37-61 9-33 (233)
233 3pxg_A Negative regulator of g 94.3 0.043 1.5E-06 40.5 4.0 33 30-62 194-226 (468)
234 1r6b_X CLPA protein; AAA+, N-t 94.3 0.042 1.4E-06 42.4 4.1 34 30-63 200-233 (758)
235 3llm_A ATP-dependent RNA helic 94.3 0.039 1.3E-06 36.6 3.4 35 21-58 63-97 (235)
236 1ltq_A Polynucleotide kinase; 94.3 0.017 5.7E-07 39.4 1.7 23 38-60 3-25 (301)
237 3zvl_A Bifunctional polynucleo 94.3 0.02 6.8E-07 41.8 2.2 26 36-61 257-282 (416)
238 2dr3_A UPF0273 protein PH0284; 94.3 0.022 7.6E-07 37.1 2.2 28 35-62 21-48 (247)
239 1g29_1 MALK, maltose transport 94.2 0.019 6.6E-07 41.8 2.1 28 35-62 27-54 (372)
240 3d31_A Sulfate/molybdate ABC t 94.2 0.014 4.9E-07 42.2 1.3 29 35-63 24-52 (348)
241 4edh_A DTMP kinase, thymidylat 94.2 0.021 7.1E-07 38.3 2.0 27 37-63 6-32 (213)
242 3tqc_A Pantothenate kinase; bi 94.2 0.027 9.4E-07 40.3 2.7 24 39-62 94-117 (321)
243 3gd7_A Fusion complex of cysti 94.2 0.015 5.1E-07 42.7 1.3 28 35-62 45-72 (390)
244 2wsm_A Hydrogenase expression/ 94.2 0.027 9.1E-07 36.4 2.4 27 35-61 28-54 (221)
245 3t15_A Ribulose bisphosphate c 94.1 0.023 8E-07 39.3 2.2 27 35-61 34-60 (293)
246 1a5t_A Delta prime, HOLB; zinc 94.1 0.034 1.2E-06 39.0 3.1 33 33-65 20-52 (334)
247 1zu4_A FTSY; GTPase, signal re 94.1 0.032 1.1E-06 39.6 3.0 29 36-64 104-132 (320)
248 2qgz_A Helicase loader, putati 94.1 0.028 9.6E-07 39.4 2.5 26 37-62 152-177 (308)
249 3qf4_A ABC transporter, ATP-bi 94.0 0.0095 3.3E-07 45.3 0.0 31 35-65 367-397 (587)
250 3v9p_A DTMP kinase, thymidylat 94.0 0.021 7.3E-07 38.9 1.8 29 36-64 24-52 (227)
251 1nlf_A Regulatory protein REPA 94.0 0.026 8.9E-07 38.4 2.2 27 36-62 29-55 (279)
252 2px0_A Flagellar biosynthesis 94.0 0.031 1E-06 39.3 2.6 28 36-63 104-131 (296)
253 3u61_B DNA polymerase accessor 94.0 0.056 1.9E-06 37.1 3.8 29 33-61 44-72 (324)
254 1ko7_A HPR kinase/phosphatase; 94.0 0.021 7E-07 41.1 1.7 23 37-59 144-166 (314)
255 2qp9_X Vacuolar protein sortin 93.9 0.028 9.5E-07 40.0 2.3 26 36-61 83-108 (355)
256 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.029 1E-06 39.4 2.4 26 36-61 44-69 (322)
257 2yv5_A YJEQ protein; hydrolase 93.9 0.033 1.1E-06 38.9 2.6 33 29-62 157-189 (302)
258 1yqt_A RNAse L inhibitor; ATP- 93.8 0.027 9.3E-07 42.6 2.2 28 35-62 45-72 (538)
259 2obl_A ESCN; ATPase, hydrolase 93.8 0.025 8.6E-07 40.7 1.9 43 20-62 54-96 (347)
260 2h92_A Cytidylate kinase; ross 93.8 0.025 8.5E-07 36.7 1.7 24 38-61 4-27 (219)
261 4f4c_A Multidrug resistance pr 93.8 0.016 5.6E-07 48.0 1.0 31 35-65 1103-1133(1321)
262 3sr0_A Adenylate kinase; phosp 93.8 0.028 9.5E-07 37.6 2.0 22 40-61 3-24 (206)
263 1oxx_K GLCV, glucose, ABC tran 93.8 0.015 5E-07 42.1 0.6 28 35-62 29-56 (353)
264 2grj_A Dephospho-COA kinase; T 93.7 0.028 9.7E-07 37.1 2.0 24 37-60 12-35 (192)
265 2x8a_A Nuclear valosin-contain 93.7 0.025 8.6E-07 39.0 1.8 25 37-61 44-68 (274)
266 2f9l_A RAB11B, member RAS onco 93.7 0.026 9E-07 36.0 1.7 22 39-60 7-28 (199)
267 2qmh_A HPR kinase/phosphorylas 93.7 0.028 9.5E-07 38.5 1.9 26 36-61 33-58 (205)
268 1knx_A Probable HPR(Ser) kinas 93.7 0.023 7.7E-07 40.9 1.5 24 36-59 146-169 (312)
269 3m6a_A ATP-dependent protease 93.7 0.046 1.6E-06 41.2 3.2 26 36-61 107-132 (543)
270 1pui_A ENGB, probable GTP-bind 93.6 0.019 6.3E-07 36.7 0.9 29 32-60 21-49 (210)
271 3vfd_A Spastin; ATPase, microt 93.6 0.036 1.2E-06 39.6 2.4 26 36-61 147-172 (389)
272 4ag6_A VIRB4 ATPase, type IV s 93.6 0.035 1.2E-06 39.6 2.3 27 36-62 34-60 (392)
273 3euj_A Chromosome partition pr 93.6 0.029 1E-06 42.4 2.0 28 38-65 30-57 (483)
274 1oix_A RAS-related protein RAB 93.5 0.024 8.4E-07 36.2 1.3 22 39-60 31-52 (191)
275 3foz_A TRNA delta(2)-isopenten 93.5 0.036 1.2E-06 40.1 2.3 32 31-62 4-35 (316)
276 4tmk_A Protein (thymidylate ki 93.5 0.027 9.3E-07 37.9 1.6 28 38-65 4-31 (213)
277 2fna_A Conserved hypothetical 93.5 0.089 3E-06 35.7 4.1 37 24-61 18-54 (357)
278 1tf7_A KAIC; homohexamer, hexa 93.5 0.027 9.4E-07 42.0 1.7 32 27-58 27-60 (525)
279 3lv8_A DTMP kinase, thymidylat 93.5 0.028 9.5E-07 38.5 1.6 28 37-64 27-54 (236)
280 1sxj_A Activator 1 95 kDa subu 93.4 0.039 1.3E-06 41.1 2.4 25 37-61 77-101 (516)
281 3pxi_A Negative regulator of g 93.4 0.073 2.5E-06 41.2 4.0 32 31-62 195-226 (758)
282 1p5z_B DCK, deoxycytidine kina 93.4 0.022 7.6E-07 38.4 0.9 28 35-62 22-49 (263)
283 3ld9_A DTMP kinase, thymidylat 93.4 0.047 1.6E-06 37.2 2.6 29 35-63 19-47 (223)
284 3k1j_A LON protease, ATP-depen 93.4 0.028 9.6E-07 42.7 1.6 27 36-62 59-85 (604)
285 2ocp_A DGK, deoxyguanosine kin 93.4 0.031 1.1E-06 37.2 1.7 25 38-62 3-27 (241)
286 2zej_A Dardarin, leucine-rich 93.3 0.027 9.1E-07 35.5 1.2 21 39-59 4-24 (184)
287 1ls1_A Signal recognition part 93.3 0.052 1.8E-06 37.9 2.8 29 36-64 97-125 (295)
288 1z2a_A RAS-related protein RAB 93.2 0.036 1.2E-06 33.6 1.7 21 39-59 7-27 (168)
289 1x6v_B Bifunctional 3'-phospho 93.2 0.058 2E-06 42.1 3.2 27 36-62 51-77 (630)
290 2fh5_B SR-beta, signal recogni 93.2 0.041 1.4E-06 35.2 1.9 26 34-59 4-29 (214)
291 3ozx_A RNAse L inhibitor; ATP 93.1 0.036 1.2E-06 42.1 1.8 29 34-62 22-50 (538)
292 2f6r_A COA synthase, bifunctio 93.1 0.027 9.2E-07 38.9 1.0 23 37-59 75-97 (281)
293 3umf_A Adenylate kinase; rossm 93.0 0.055 1.9E-06 36.6 2.5 26 36-61 28-53 (217)
294 2ga8_A Hypothetical 39.9 kDa p 93.0 0.074 2.5E-06 39.0 3.3 39 23-61 7-48 (359)
295 3d3q_A TRNA delta(2)-isopenten 93.0 0.038 1.3E-06 40.1 1.7 25 38-62 8-32 (340)
296 2dyk_A GTP-binding protein; GT 93.0 0.042 1.4E-06 33.1 1.7 21 39-59 3-23 (161)
297 2qag_B Septin-6, protein NEDD5 93.0 0.048 1.6E-06 40.7 2.3 28 34-61 37-66 (427)
298 1u8z_A RAS-related protein RAL 92.9 0.044 1.5E-06 33.0 1.7 21 39-59 6-26 (168)
299 3hu3_A Transitional endoplasmi 92.8 0.056 1.9E-06 40.5 2.5 26 35-60 236-261 (489)
300 3tmk_A Thymidylate kinase; pho 92.8 0.04 1.4E-06 37.2 1.6 27 37-63 5-31 (216)
301 2wji_A Ferrous iron transport 92.8 0.042 1.4E-06 34.0 1.6 21 39-59 5-25 (165)
302 2axn_A 6-phosphofructo-2-kinas 92.8 0.058 2E-06 40.7 2.6 27 36-62 34-60 (520)
303 3j16_B RLI1P; ribosome recycli 92.8 0.034 1.2E-06 43.0 1.3 29 35-63 101-129 (608)
304 1kao_A RAP2A; GTP-binding prot 92.7 0.047 1.6E-06 32.8 1.7 21 39-59 5-25 (167)
305 1ek0_A Protein (GTP-binding pr 92.7 0.047 1.6E-06 33.0 1.7 21 39-59 5-25 (170)
306 2wjg_A FEOB, ferrous iron tran 92.7 0.044 1.5E-06 34.1 1.6 22 38-59 8-29 (188)
307 1bif_A 6-phosphofructo-2-kinas 92.7 0.058 2E-06 39.7 2.4 27 36-62 38-64 (469)
308 2ce2_X GTPase HRAS; signaling 92.7 0.041 1.4E-06 33.0 1.3 21 39-59 5-25 (166)
309 1ky3_A GTP-binding protein YPT 92.6 0.049 1.7E-06 33.4 1.7 23 37-59 8-30 (182)
310 2gj8_A MNME, tRNA modification 92.6 0.045 1.5E-06 34.3 1.5 24 36-59 3-26 (172)
311 1pzn_A RAD51, DNA repair and r 92.6 0.048 1.6E-06 39.0 1.8 36 26-61 118-155 (349)
312 1c1y_A RAS-related protein RAP 92.6 0.051 1.7E-06 32.8 1.7 21 39-59 5-25 (167)
313 3ozx_A RNAse L inhibitor; ATP 92.6 0.026 8.9E-07 42.9 0.4 30 35-64 292-321 (538)
314 2zts_A Putative uncharacterize 92.5 0.1 3.4E-06 33.9 3.2 26 35-60 28-53 (251)
315 1u0l_A Probable GTPase ENGC; p 92.5 0.042 1.4E-06 38.3 1.4 28 35-62 167-194 (301)
316 1ypw_A Transitional endoplasmi 92.5 0.059 2E-06 42.6 2.3 26 35-60 236-261 (806)
317 1z08_A RAS-related protein RAB 92.5 0.052 1.8E-06 33.0 1.7 21 39-59 8-28 (170)
318 2gf0_A GTP-binding protein DI- 92.5 0.063 2.1E-06 33.6 2.0 26 34-59 5-30 (199)
319 1z0j_A RAB-22, RAS-related pro 92.4 0.054 1.8E-06 32.8 1.7 21 39-59 8-28 (170)
320 2qen_A Walker-type ATPase; unk 92.4 0.094 3.2E-06 35.6 3.0 23 38-60 32-54 (350)
321 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.055 1.9E-06 33.2 1.7 21 39-59 9-29 (177)
322 1qvr_A CLPB protein; coiled co 92.4 0.08 2.7E-06 41.7 3.0 33 31-63 185-217 (854)
323 3clv_A RAB5 protein, putative; 92.4 0.055 1.9E-06 33.5 1.7 22 38-59 8-29 (208)
324 2erx_A GTP-binding protein DI- 92.4 0.052 1.8E-06 32.8 1.5 21 39-59 5-25 (172)
325 2fn4_A P23, RAS-related protei 92.3 0.046 1.6E-06 33.5 1.3 22 38-59 10-31 (181)
326 3bk7_A ABC transporter ATP-bin 92.3 0.037 1.3E-06 42.6 0.9 28 35-62 115-142 (607)
327 2ged_A SR-beta, signal recogni 92.3 0.057 2E-06 33.8 1.7 23 37-59 48-70 (193)
328 2nzj_A GTP-binding protein REM 92.2 0.055 1.9E-06 33.0 1.5 21 39-59 6-26 (175)
329 3bc1_A RAS-related protein RAB 92.2 0.06 2E-06 33.2 1.7 21 39-59 13-33 (195)
330 3ux8_A Excinuclease ABC, A sub 92.2 0.052 1.8E-06 41.7 1.7 24 35-58 346-369 (670)
331 2a9k_A RAS-related protein RAL 92.2 0.061 2.1E-06 33.1 1.7 22 38-59 19-40 (187)
332 1z0f_A RAB14, member RAS oncog 92.2 0.061 2.1E-06 32.8 1.7 21 39-59 17-37 (179)
333 2zan_A Vacuolar protein sortin 92.1 0.069 2.4E-06 39.1 2.2 26 36-61 166-191 (444)
334 1r2q_A RAS-related protein RAB 92.1 0.063 2.1E-06 32.4 1.7 21 39-59 8-28 (170)
335 4f4c_A Multidrug resistance pr 92.1 0.027 9.2E-07 46.7 -0.0 32 35-66 442-473 (1321)
336 3pqc_A Probable GTP-binding pr 92.0 0.048 1.6E-06 33.9 1.1 21 39-59 25-45 (195)
337 3kl4_A SRP54, signal recogniti 92.0 0.11 3.6E-06 38.8 3.1 27 37-63 97-123 (433)
338 3lxx_A GTPase IMAP family memb 92.0 0.057 2E-06 35.6 1.5 22 38-59 30-51 (239)
339 1j8m_F SRP54, signal recogniti 92.0 0.12 4.1E-06 36.2 3.3 27 37-63 98-124 (297)
340 1upt_A ARL1, ADP-ribosylation 92.0 0.066 2.2E-06 32.5 1.7 22 38-59 8-29 (171)
341 1g16_A RAS-related protein SEC 92.0 0.055 1.9E-06 32.8 1.3 21 39-59 5-25 (170)
342 4dsu_A GTPase KRAS, isoform 2B 92.0 0.065 2.2E-06 33.1 1.7 21 39-59 6-26 (189)
343 3ihw_A Centg3; RAS, centaurin, 92.0 0.064 2.2E-06 33.9 1.7 24 36-59 19-42 (184)
344 3crm_A TRNA delta(2)-isopenten 92.0 0.057 2E-06 38.9 1.6 24 38-61 6-29 (323)
345 1r8s_A ADP-ribosylation factor 91.9 0.068 2.3E-06 32.3 1.7 20 40-59 3-22 (164)
346 2rcn_A Probable GTPase ENGC; Y 91.9 0.07 2.4E-06 38.8 2.0 28 35-62 213-240 (358)
347 3g5u_A MCG1178, multidrug resi 91.9 0.031 1.1E-06 46.2 0.2 30 35-64 414-443 (1284)
348 3q85_A GTP-binding protein REM 91.9 0.064 2.2E-06 32.6 1.6 20 39-58 4-23 (169)
349 3hjn_A DTMP kinase, thymidylat 91.9 0.074 2.5E-06 35.0 2.0 25 40-64 3-27 (197)
350 3kkq_A RAS-related protein M-R 91.9 0.064 2.2E-06 33.2 1.6 22 38-59 19-40 (183)
351 1qvr_A CLPB protein; coiled co 91.9 0.095 3.2E-06 41.3 2.8 25 38-62 589-613 (854)
352 3upu_A ATP-dependent DNA helic 91.8 0.15 5.2E-06 37.2 3.8 28 38-65 46-73 (459)
353 2g6b_A RAS-related protein RAB 91.8 0.072 2.5E-06 32.7 1.7 21 39-59 12-32 (180)
354 1tf7_A KAIC; homohexamer, hexa 91.8 0.079 2.7E-06 39.5 2.2 35 28-62 270-306 (525)
355 3exa_A TRNA delta(2)-isopenten 91.7 0.062 2.1E-06 38.9 1.6 25 38-62 4-28 (322)
356 1yrb_A ATP(GTP)binding protein 91.7 0.11 3.8E-06 34.3 2.7 28 35-62 12-39 (262)
357 3con_A GTPase NRAS; structural 91.7 0.072 2.5E-06 33.2 1.7 22 38-59 22-43 (190)
358 1yqt_A RNAse L inhibitor; ATP- 91.7 0.043 1.5E-06 41.5 0.7 28 35-62 310-337 (538)
359 2efe_B Small GTP-binding prote 91.7 0.073 2.5E-06 32.7 1.7 22 38-59 13-34 (181)
360 2hxs_A RAB-26, RAS-related pro 91.7 0.072 2.5E-06 32.6 1.6 22 38-59 7-28 (178)
361 3tw8_B RAS-related protein RAB 91.6 0.054 1.9E-06 33.1 1.0 21 39-59 11-31 (181)
362 1ksh_A ARF-like protein 2; sma 91.6 0.077 2.6E-06 33.0 1.7 31 29-59 10-40 (186)
363 2atv_A RERG, RAS-like estrogen 91.6 0.094 3.2E-06 33.1 2.2 25 35-59 26-50 (196)
364 2oil_A CATX-8, RAS-related pro 91.6 0.076 2.6E-06 33.3 1.7 21 39-59 27-47 (193)
365 2bov_A RAla, RAS-related prote 91.6 0.075 2.6E-06 33.4 1.7 22 38-59 15-36 (206)
366 1u0j_A DNA replication protein 91.6 0.15 5.3E-06 35.8 3.4 38 24-61 89-128 (267)
367 1z06_A RAS-related protein RAB 91.6 0.076 2.6E-06 33.3 1.7 23 37-59 20-42 (189)
368 2bme_A RAB4A, RAS-related prot 91.6 0.065 2.2E-06 33.2 1.3 21 39-59 12-32 (186)
369 1m2o_B GTP-binding protein SAR 91.6 0.072 2.5E-06 33.8 1.6 24 36-59 22-45 (190)
370 3tkl_A RAS-related protein RAB 91.5 0.078 2.7E-06 33.1 1.7 21 39-59 18-38 (196)
371 3bk7_A ABC transporter ATP-bin 91.5 0.046 1.6E-06 42.1 0.7 28 35-62 380-407 (607)
372 2qag_C Septin-7; cell cycle, c 91.5 0.063 2.2E-06 39.7 1.4 27 35-61 29-55 (418)
373 2y8e_A RAB-protein 6, GH09086P 91.5 0.062 2.1E-06 32.8 1.2 21 38-58 15-35 (179)
374 1svi_A GTP-binding protein YSX 91.5 0.06 2.1E-06 33.7 1.1 23 37-59 23-45 (195)
375 1r6b_X CLPA protein; AAA+, N-t 91.5 0.11 3.6E-06 40.2 2.7 24 38-61 489-512 (758)
376 1t9h_A YLOQ, probable GTPase E 91.5 0.028 9.7E-07 40.0 -0.5 31 33-63 169-199 (307)
377 2ffh_A Protein (FFH); SRP54, s 91.5 0.11 3.8E-06 38.6 2.7 28 36-63 97-124 (425)
378 2cxx_A Probable GTP-binding pr 91.4 0.061 2.1E-06 33.3 1.1 21 39-59 3-23 (190)
379 3q72_A GTP-binding protein RAD 91.4 0.05 1.7E-06 33.0 0.7 21 39-59 4-24 (166)
380 3lda_A DNA repair protein RAD5 91.4 0.074 2.5E-06 39.0 1.7 33 26-58 165-199 (400)
381 2a5j_A RAS-related protein RAB 91.4 0.083 2.9E-06 33.2 1.7 21 39-59 23-43 (191)
382 2qnr_A Septin-2, protein NEDD5 91.4 0.059 2E-06 37.6 1.1 24 36-59 17-40 (301)
383 3pxi_A Negative regulator of g 91.4 0.09 3.1E-06 40.7 2.2 24 39-62 523-546 (758)
384 2lkc_A Translation initiation 91.3 0.11 3.7E-06 31.8 2.2 24 36-59 7-30 (178)
385 2c9o_A RUVB-like 1; hexameric 91.3 0.1 3.4E-06 38.2 2.3 25 37-61 63-87 (456)
386 2r44_A Uncharacterized protein 91.3 0.057 1.9E-06 37.3 0.9 25 37-61 46-70 (331)
387 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.087 3E-06 32.4 1.7 21 39-59 7-27 (186)
388 2ce7_A Cell division protein F 91.3 0.11 3.9E-06 39.0 2.6 26 36-61 48-73 (476)
389 4hlc_A DTMP kinase, thymidylat 91.3 0.093 3.2E-06 34.8 1.9 23 40-62 5-27 (205)
390 3ch4_B Pmkase, phosphomevalona 91.2 0.078 2.7E-06 35.9 1.6 25 37-61 11-35 (202)
391 1nrj_B SR-beta, signal recogni 91.2 0.12 4.1E-06 33.1 2.4 24 36-59 11-34 (218)
392 3bwd_D RAC-like GTP-binding pr 91.1 0.091 3.1E-06 32.3 1.7 23 37-59 8-30 (182)
393 1zj6_A ADP-ribosylation factor 91.1 0.14 4.8E-06 32.0 2.6 25 34-58 13-37 (187)
394 1vg8_A RAS-related protein RAB 91.1 0.089 3.1E-06 33.2 1.7 22 38-59 9-30 (207)
395 1x3s_A RAS-related protein RAB 91.0 0.094 3.2E-06 32.6 1.7 21 39-59 17-37 (195)
396 3a8t_A Adenylate isopentenyltr 91.0 0.093 3.2E-06 38.1 1.8 27 36-62 39-65 (339)
397 2dhr_A FTSH; AAA+ protein, hex 90.9 0.12 4.1E-06 39.1 2.4 25 37-61 64-88 (499)
398 1zbd_A Rabphilin-3A; G protein 90.9 0.092 3.1E-06 33.2 1.6 21 39-59 10-30 (203)
399 2gf9_A RAS-related protein RAB 90.9 0.099 3.4E-06 32.7 1.7 21 39-59 24-44 (189)
400 3t5g_A GTP-binding protein RHE 90.8 0.079 2.7E-06 32.7 1.2 20 39-58 8-27 (181)
401 1moz_A ARL1, ADP-ribosylation 90.8 0.062 2.1E-06 33.2 0.7 24 35-58 16-39 (183)
402 3g5u_A MCG1178, multidrug resi 90.8 0.051 1.7E-06 45.0 0.3 31 35-65 1057-1087(1284)
403 3fdi_A Uncharacterized protein 90.8 0.093 3.2E-06 34.6 1.6 24 38-61 7-30 (201)
404 1e9r_A Conjugal transfer prote 90.8 0.09 3.1E-06 37.8 1.6 29 35-63 51-79 (437)
405 3j16_B RLI1P; ribosome recycli 90.8 0.11 3.9E-06 40.0 2.2 28 38-65 379-406 (608)
406 3eph_A TRNA isopentenyltransfe 90.8 0.089 3E-06 39.2 1.6 24 39-62 4-27 (409)
407 1tue_A Replication protein E1; 90.8 0.092 3.1E-06 36.1 1.5 37 26-62 46-83 (212)
408 2fu5_C RAS-related protein RAB 90.7 0.084 2.9E-06 32.7 1.2 20 39-58 10-29 (183)
409 2www_A Methylmalonic aciduria 90.7 0.17 5.8E-06 36.0 3.0 27 37-63 74-100 (349)
410 1m7b_A RND3/RHOE small GTP-bin 90.7 0.088 3E-06 32.9 1.3 22 38-59 8-29 (184)
411 4bas_A ADP-ribosylation factor 90.7 0.078 2.7E-06 33.2 1.1 23 37-59 17-39 (199)
412 3c5c_A RAS-like protein 12; GD 90.7 0.1 3.6E-06 32.9 1.7 24 36-59 20-43 (187)
413 2p67_A LAO/AO transport system 90.7 0.2 6.9E-06 35.4 3.3 30 34-63 53-82 (341)
414 3bh0_A DNAB-like replicative h 90.7 0.16 5.4E-06 35.6 2.7 35 28-62 58-93 (315)
415 2xtp_A GTPase IMAP family memb 90.6 0.081 2.8E-06 35.3 1.2 23 37-59 22-44 (260)
416 1zd9_A ADP-ribosylation factor 90.6 0.11 3.7E-06 32.7 1.7 23 37-59 22-44 (188)
417 3szr_A Interferon-induced GTP- 90.5 0.089 3E-06 40.3 1.4 22 40-61 48-69 (608)
418 2b8t_A Thymidine kinase; deoxy 90.5 0.16 5.5E-06 34.5 2.6 26 36-61 11-36 (223)
419 2fg5_A RAB-22B, RAS-related pr 90.4 0.094 3.2E-06 33.1 1.3 22 38-59 24-45 (192)
420 3oes_A GTPase rhebl1; small GT 90.4 0.095 3.3E-06 33.3 1.3 32 27-59 15-46 (201)
421 2iwr_A Centaurin gamma 1; ANK 90.4 0.085 2.9E-06 32.5 1.0 22 38-59 8-29 (178)
422 3dz8_A RAS-related protein RAB 90.3 0.098 3.4E-06 32.9 1.3 21 39-59 25-45 (191)
423 3dm5_A SRP54, signal recogniti 90.3 0.15 5.2E-06 38.2 2.5 27 37-63 100-126 (443)
424 3e1s_A Exodeoxyribonuclease V, 90.3 0.27 9.2E-06 37.5 3.9 28 36-63 203-230 (574)
425 2q3h_A RAS homolog gene family 90.2 0.11 3.9E-06 32.7 1.6 23 37-59 20-42 (201)
426 3reg_A RHO-like small GTPase; 90.2 0.11 3.7E-06 32.7 1.4 25 35-59 21-45 (194)
427 2f7s_A C25KG, RAS-related prot 90.2 0.11 3.9E-06 33.1 1.6 21 39-59 27-47 (217)
428 2il1_A RAB12; G-protein, GDP, 90.2 0.091 3.1E-06 33.2 1.0 21 39-59 28-48 (192)
429 2iw3_A Elongation factor 3A; a 90.1 0.13 4.3E-06 42.2 2.1 24 35-58 459-482 (986)
430 3t1o_A Gliding protein MGLA; G 90.1 0.13 4.4E-06 31.9 1.7 23 38-60 15-37 (198)
431 2o52_A RAS-related protein RAB 90.1 0.099 3.4E-06 33.3 1.2 22 38-59 26-47 (200)
432 1tq4_A IIGP1, interferon-induc 90.1 0.11 3.9E-06 38.3 1.7 26 38-63 70-95 (413)
433 2p5s_A RAS and EF-hand domain 90.1 0.15 5.2E-06 32.3 2.1 25 35-59 26-50 (199)
434 1f6b_A SAR1; gtpases, N-termin 90.1 0.13 4.5E-06 32.8 1.8 33 26-58 14-46 (198)
435 2bcg_Y Protein YP2, GTP-bindin 90.0 0.11 3.7E-06 33.0 1.3 21 39-59 10-30 (206)
436 2ew1_A RAS-related protein RAB 90.0 0.11 3.7E-06 33.6 1.3 21 39-59 28-48 (201)
437 2gno_A DNA polymerase III, gam 90.0 0.25 8.5E-06 34.7 3.3 34 27-60 8-41 (305)
438 3cbq_A GTP-binding protein REM 90.0 0.1 3.6E-06 33.3 1.2 20 39-58 25-44 (195)
439 3cph_A RAS-related protein SEC 89.9 0.13 4.5E-06 32.5 1.7 22 38-59 21-42 (213)
440 3p32_A Probable GTPase RV1496/ 89.9 0.22 7.5E-06 35.3 3.0 30 34-63 76-105 (355)
441 2r6a_A DNAB helicase, replicat 89.9 0.19 6.4E-06 36.8 2.7 29 35-63 201-229 (454)
442 1fzq_A ADP-ribosylation factor 89.9 0.082 2.8E-06 33.2 0.7 24 36-59 15-38 (181)
443 2cjw_A GTP-binding protein GEM 89.8 0.13 4.3E-06 32.8 1.6 21 39-59 8-28 (192)
444 1wb9_A DNA mismatch repair pro 89.8 0.14 4.9E-06 40.7 2.1 26 35-60 605-630 (800)
445 2v3c_C SRP54, signal recogniti 89.8 0.21 7.3E-06 36.9 2.9 26 38-63 100-125 (432)
446 2fv8_A H6, RHO-related GTP-bin 89.8 0.11 3.9E-06 33.1 1.3 23 37-59 25-47 (207)
447 2yc2_C IFT27, small RAB-relate 89.8 0.086 3E-06 33.1 0.7 22 39-60 22-43 (208)
448 2qu8_A Putative nucleolar GTP- 89.7 0.11 3.8E-06 33.8 1.2 23 37-59 29-51 (228)
449 4aby_A DNA repair protein RECN 89.7 0.051 1.8E-06 38.6 -0.5 21 39-59 62-82 (415)
450 1e69_A Chromosome segregation 89.6 0.16 5.3E-06 35.5 2.0 21 39-59 26-46 (322)
451 3hdt_A Putative kinase; struct 89.6 0.17 5.6E-06 34.2 2.0 25 37-61 14-38 (223)
452 2h17_A ADP-ribosylation factor 89.5 0.1 3.4E-06 32.5 0.9 23 37-59 21-43 (181)
453 2h57_A ADP-ribosylation factor 89.5 0.087 3E-06 33.0 0.5 23 37-59 21-43 (190)
454 3l0i_B RAS-related protein RAB 89.4 0.1 3.6E-06 33.0 0.9 20 39-58 35-54 (199)
455 2atx_A Small GTP binding prote 89.4 0.13 4.4E-06 32.2 1.3 21 39-59 20-40 (194)
456 4gzl_A RAS-related C3 botulinu 89.3 0.15 5.3E-06 32.6 1.7 26 34-59 27-52 (204)
457 3qf7_A RAD50; ABC-ATPase, ATPa 89.3 0.16 5.6E-06 36.3 1.9 21 39-59 25-45 (365)
458 1gwn_A RHO-related GTP-binding 89.3 0.13 4.5E-06 33.2 1.3 35 25-59 15-50 (205)
459 2j1l_A RHO-related GTP-binding 89.3 0.12 4.2E-06 33.3 1.2 22 38-59 35-56 (214)
460 3lxw_A GTPase IMAP family memb 89.3 0.15 5E-06 34.3 1.6 25 35-59 19-43 (247)
461 3hr8_A Protein RECA; alpha and 89.2 0.21 7.2E-06 36.2 2.5 39 25-63 46-87 (356)
462 3q3j_B RHO-related GTP-binding 89.1 0.16 5.6E-06 32.8 1.7 23 37-59 27-49 (214)
463 2xxa_A Signal recognition part 89.1 0.24 8.2E-06 36.6 2.8 28 37-64 100-127 (433)
464 2zr9_A Protein RECA, recombina 89.1 0.19 6.7E-06 35.9 2.2 37 26-62 47-86 (349)
465 3llu_A RAS-related GTP-binding 89.0 0.13 4.6E-06 32.5 1.2 25 35-59 18-42 (196)
466 1v5w_A DMC1, meiotic recombina 89.0 0.19 6.6E-06 35.6 2.1 35 26-60 109-145 (343)
467 3t5d_A Septin-7; GTP-binding p 89.0 0.1 3.6E-06 35.4 0.7 22 37-58 8-29 (274)
468 1ewq_A DNA mismatch repair pro 88.9 0.17 5.8E-06 40.1 2.0 25 37-61 576-600 (765)
469 2gco_A H9, RHO-related GTP-bin 88.9 0.15 5E-06 32.5 1.3 22 38-59 26-47 (201)
470 3cpj_B GTP-binding protein YPT 88.8 0.18 6.2E-06 32.6 1.7 21 39-59 15-35 (223)
471 2j0v_A RAC-like GTP-binding pr 88.7 0.15 5.2E-06 32.4 1.3 22 38-59 10-31 (212)
472 2orw_A Thymidine kinase; TMTK, 88.7 0.23 8E-06 32.1 2.2 22 37-58 3-24 (184)
473 2hup_A RAS-related protein RAB 88.6 0.16 5.3E-06 32.5 1.3 21 39-59 31-51 (201)
474 1w36_D RECD, exodeoxyribonucle 88.6 0.24 8E-06 37.9 2.5 29 36-64 163-191 (608)
475 3gj0_A GTP-binding nuclear pro 88.4 0.12 4.1E-06 33.3 0.6 21 38-58 16-36 (221)
476 4dkx_A RAS-related protein RAB 88.3 0.2 6.8E-06 33.3 1.7 21 39-59 15-35 (216)
477 3pih_A Uvrabc system protein A 88.2 0.16 5.5E-06 41.2 1.4 20 35-54 22-41 (916)
478 3nbx_X ATPase RAVA; AAA+ ATPas 88.2 0.19 6.3E-06 38.0 1.7 25 37-61 41-65 (500)
479 2z43_A DNA repair and recombin 88.2 0.21 7.2E-06 34.9 1.8 36 26-61 94-131 (324)
480 2b6h_A ADP-ribosylation factor 88.1 0.13 4.4E-06 32.7 0.7 37 21-58 14-50 (192)
481 4b4t_K 26S protease regulatory 88.1 0.24 8.1E-06 36.8 2.1 27 35-61 204-230 (428)
482 3ice_A Transcription terminati 88.0 0.39 1.3E-05 36.1 3.3 42 21-62 158-199 (422)
483 4dhe_A Probable GTP-binding pr 88.0 0.067 2.3E-06 34.3 -0.8 22 38-59 30-51 (223)
484 2g3y_A GTP-binding protein GEM 88.0 0.2 6.8E-06 33.0 1.5 20 39-58 39-58 (211)
485 3thx_A DNA mismatch repair pro 87.9 0.32 1.1E-05 39.5 2.9 22 36-57 661-682 (934)
486 1h65_A Chloroplast outer envel 87.9 0.33 1.1E-05 32.7 2.6 24 36-59 38-61 (270)
487 3k53_A Ferrous iron transport 87.9 0.17 5.8E-06 34.2 1.2 21 39-59 5-25 (271)
488 2qag_A Septin-2, protein NEDD5 87.9 0.2 6.9E-06 35.8 1.6 28 32-59 32-59 (361)
489 2iw3_A Elongation factor 3A; a 87.8 0.13 4.3E-06 42.2 0.6 27 35-61 697-723 (986)
490 3t34_A Dynamin-related protein 87.6 0.21 7E-06 35.3 1.5 21 39-59 36-56 (360)
491 2vf7_A UVRA2, excinuclease ABC 87.6 0.2 6.9E-06 40.2 1.6 20 36-55 35-54 (842)
492 1f2t_A RAD50 ABC-ATPase; DNA d 87.5 0.25 8.4E-06 31.0 1.7 22 38-59 24-45 (149)
493 4b4t_L 26S protease subunit RP 87.5 0.27 9.2E-06 36.7 2.2 27 35-61 213-239 (437)
494 1u94_A RECA protein, recombina 87.4 0.34 1.2E-05 34.9 2.6 37 26-62 49-88 (356)
495 3th5_A RAS-related C3 botulinu 87.3 0.11 3.8E-06 33.0 0.0 24 35-58 28-51 (204)
496 2i1q_A DNA repair and recombin 87.3 0.24 8.1E-06 34.3 1.7 35 26-60 85-121 (322)
497 4djt_A GTP-binding nuclear pro 87.3 0.14 4.9E-06 32.7 0.5 23 36-58 10-32 (218)
498 2q6t_A DNAB replication FORK h 87.3 0.31 1.1E-05 35.5 2.3 36 28-63 190-226 (444)
499 4b4t_M 26S protease regulatory 87.1 0.29 1E-05 36.4 2.2 27 35-61 213-239 (434)
500 2j37_W Signal recognition part 87.1 0.34 1.2E-05 36.7 2.5 27 37-63 101-127 (504)
No 1
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.79 E-value=4.1e-20 Score=146.50 Aligned_cols=65 Identities=49% Similarity=0.622 Sum_probs=58.3
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~ 70 (79)
.+.+|+.+. ..|||| |++|++||+.|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus 138 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~ 204 (783)
T 4db1_A 138 VVAAYRGKKRSEAPPHI---FSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDR 204 (783)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC
T ss_pred HHHHhcCCCcCCCCchh---hHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCc
Confidence 356787644 579999 99999999999999999999999999999999999999999999876643
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.78 E-value=5.6e-20 Score=146.49 Aligned_cols=66 Identities=47% Similarity=0.541 Sum_probs=58.8
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~ 71 (79)
.+.+|+.+. ..|||| |++|++||++|+..++||||||+|||||||||++|++|+||+.++++..++
T Consensus 136 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~ 203 (837)
T 1kk8_A 136 VIAKYRGKRKTEIPPHL---FSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 203 (837)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHhcCCCcCCCCCcH---HHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcc
Confidence 356787654 479999 999999999999999999999999999999999999999999999776543
No 3
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.78 E-value=6.2e-20 Score=145.30 Aligned_cols=65 Identities=46% Similarity=0.562 Sum_probs=56.8
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~ 70 (79)
.+.+|+.+. ..|||| |++|++||++|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus 139 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~ 205 (770)
T 1w9i_A 139 MVDIFKGRRRNEVAPHI---FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205 (770)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHhcCCCcCCCCccH---HHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCC
Confidence 356787654 479999 99999999999999999999999999999999999999999999976543
No 4
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.78 E-value=1.2e-19 Score=146.37 Aligned_cols=66 Identities=56% Similarity=0.684 Sum_probs=58.8
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~ 71 (79)
.+.+|+.+. ..|||| |+||++||++|+..++||||||+|||||||||++|++|+||+.++++..++
T Consensus 113 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~ 180 (995)
T 2ycu_A 113 IVEMYRGKKRHEVPPHV---YAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGR 180 (995)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSC
T ss_pred HHHHhcCCccCCCCchH---HHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCcc
Confidence 356787654 479999 999999999999999999999999999999999999999999999776533
No 5
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.77 E-value=1e-19 Score=144.32 Aligned_cols=63 Identities=35% Similarity=0.431 Sum_probs=56.9
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
.+.+|+.+. ..|||| |++|++||++|+..++||||||+|||||||||++|++|+||+.++++.
T Consensus 123 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~ 187 (795)
T 1w7j_A 123 IINAYSGQNMGDMDPHI---FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA 187 (795)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCCccCCCccH---hHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCC
Confidence 356787654 479999 999999999999999999999999999999999999999999988654
No 6
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.77 E-value=1.1e-19 Score=142.62 Aligned_cols=61 Identities=33% Similarity=0.524 Sum_probs=55.8
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
.+.+|+.+. ..|||| |++|++||++|+..++||||||+|||||||||++|++|+||+.+++
T Consensus 61 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~ 123 (697)
T 1lkx_A 61 DIKAYNGRYKYEMPPHM---YALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSS 123 (697)
T ss_dssp HHHHHSSCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCCCCCCCchH---HHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcC
Confidence 356777654 479999 9999999999999999999999999999999999999999999986
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.77 E-value=1.5e-19 Score=146.02 Aligned_cols=65 Identities=46% Similarity=0.562 Sum_probs=58.6
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~ 70 (79)
.+.+|+.+. ..|||| |+||++||++|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus 139 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~ 205 (1010)
T 1g8x_A 139 MVDIFKGRRRNEVAPHI---FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205 (1010)
T ss_dssp HHHHHTTCCTTTSCCCH---HHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHhcCCCccCCCccH---HHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCC
Confidence 356787654 479999 99999999999999999999999999999999999999999999976654
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.77 E-value=1.8e-19 Score=146.41 Aligned_cols=65 Identities=55% Similarity=0.673 Sum_probs=58.3
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~ 70 (79)
.+.+|+.+. ..|||| |+||+.||++|+..++||||||+||||||||+++|++|+||+.++++..+
T Consensus 136 ~~~~y~~~~~~~~~PHi---~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~ 202 (1184)
T 1i84_S 136 IIDMYKGKKRHEMPPHI---YAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKG 202 (1184)
T ss_dssp HHHHHSSCCSSSSCCCH---HHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcccccCCccH---hhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCc
Confidence 356787654 479999 99999999999999999999999999999999999999999999977543
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.77 E-value=1.8e-19 Score=142.81 Aligned_cols=62 Identities=35% Similarity=0.387 Sum_probs=55.5
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~ 67 (79)
.+.+|+.+. ..|||| |++|++||++|+..++||||||+|||||||||++|++|+||+..+++
T Consensus 107 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~ 170 (784)
T 2v26_A 107 TIKSYQGKSLGTMPPHV---FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGT 170 (784)
T ss_dssp HHHHHTTCCTTSSCSCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCcccCCchH---HHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCC
Confidence 356787654 479999 99999999999999999999999999999999999999999988754
No 10
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.76 E-value=1.9e-19 Score=146.09 Aligned_cols=63 Identities=35% Similarity=0.375 Sum_probs=56.5
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
.+.+|+.+. +.|||| |+||++||++|+..++||||||+|||||||||++|++|+||+..+++.
T Consensus 111 ~~~~Y~g~~~~~lpPHI---faiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~ 175 (1052)
T 4anj_A 111 TIKSYQGKSLGTMPPHV---FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG 175 (1052)
T ss_dssp HHHHHTTCCBTTBCSCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCCCCCCCcH---HHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 356787654 478999 999999999999999999999999999999999999999999988654
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.75 E-value=3.7e-19 Score=144.46 Aligned_cols=63 Identities=35% Similarity=0.431 Sum_probs=56.8
Q ss_pred hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856 3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68 (79)
Q Consensus 3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~ 68 (79)
.+.+|+... ..|||| |+||++||++|+..++||||||+|||||||||++|++|+||+.++++.
T Consensus 123 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~ 187 (1080)
T 2dfs_A 123 IINAYSGQNMGDMDPHI---FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA 187 (1080)
T ss_dssp HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCCCCCcH---HHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCC
Confidence 356777654 479999 999999999999999999999999999999999999999999988654
No 12
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.16 E-value=0.00019 Score=46.90 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+.......|+|.|.+|||||+.++.+...+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345556677899999999999999999987755
No 13
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=0.00045 Score=45.08 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.-+...+...|+|.|.||||||+..+.+...|.
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344456788999999999999999999988774
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.00 E-value=0.00078 Score=41.78 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=27.1
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.......|+|+|++|+|||..++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 334456788999999999999999999887754
No 15
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.94 E-value=0.0003 Score=44.94 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.0
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
|..-.+...|+|.|.+|||||+.++.+...
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 555667789999999999999999998764
No 16
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.84 E-value=0.00085 Score=41.77 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=26.7
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+.......|+|+|++|+|||..++.+.+.+..
T Consensus 38 l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 38 LSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34466788999999999999999999887754
No 17
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00055 Score=44.15 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.||||||+.++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999988653
No 18
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.76 E-value=0.00078 Score=44.25 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++.+.|.|.|.||||||+.++.+...+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999988763
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.73 E-value=0.0016 Score=42.20 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=26.9
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+......+.++|+|++|+|||..++.+.+.+..
T Consensus 46 ~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 46 AASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333446789999999999999999998877653
No 20
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.71 E-value=0.00074 Score=42.55 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-|.|+|+|..|||||+.++.+-+.|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999999999887654
No 21
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.69 E-value=0.00077 Score=43.38 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.+.|.|.|.+|||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678999999999999999998765
No 22
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.65 E-value=0.00079 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|+|-+|||||+.++.+.+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999987643
No 23
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.65 E-value=0.00072 Score=44.44 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.++|.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998764
No 24
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.62 E-value=0.00084 Score=44.07 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.0
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
-.+.+.+.|.|+||||||+..+.+...+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35678899999999999999999987763
No 25
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.61 E-value=0.00072 Score=43.71 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|+|+|.||||||+..+.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 26
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.57 E-value=0.00096 Score=42.87 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|.+|||||+.++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999998877
No 27
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.0013 Score=42.85 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+...|+|.|.+|||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988754
No 28
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.52 E-value=0.0011 Score=43.14 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+...|.|.|.+|||||+.++.+...+-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556789999999999999999887654
No 29
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.51 E-value=0.0015 Score=41.61 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.++|.|.+|+|||+.++.+...+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999887763
No 30
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.0022 Score=44.32 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.+.+- -...+.++|.|.+|||||+..+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 444444 5678899999999999999999999987644
No 31
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.51 E-value=0.0028 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=25.0
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+....++|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 41 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344568999999999999999998877643
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.0011 Score=43.06 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|+|.+|||||+.++.+.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999988765
No 33
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.49 E-value=0.0015 Score=41.27 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+...|+|.|.+|||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999887654
No 34
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.48 E-value=0.0023 Score=40.63 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+...+..- ..+.++|.|++|+|||..++.+...+..
T Consensus 26 ~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 26 ELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444333 7788999999999999999999987763
No 35
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0012 Score=43.45 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....|+|+|.||+|||+.++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999988764
No 36
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.45 E-value=0.0013 Score=42.49 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=25.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 677899999999999999999999987
No 37
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0013 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.4
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|-+|||||+.++.+.+.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987664
No 38
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.42 E-value=0.0023 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|.+........|+|.|.+|||||+.++.+.+.|.
T Consensus 17 r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 17 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444556678899999999999999999988775
No 39
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0012 Score=43.19 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|.||||||+.++.+.+.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998876
No 40
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.41 E-value=0.0011 Score=44.13 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|||+|.||+||++..+.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998654
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0033 Score=39.71 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=25.4
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.......++|+|++|.|||..++.+.+.+.
T Consensus 31 ~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 31 GYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 334444445699999999999999999887663
No 42
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.39 E-value=0.0012 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.||||||+..+.++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356788999999999999999998866
No 43
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.35 E-value=0.0015 Score=41.02 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|||||+.++.+...+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999887653
No 44
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.35 E-value=0.0015 Score=44.13 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...++|+|.||||||+..+.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567899999999999999999887664
No 45
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.33 E-value=0.0019 Score=41.08 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|.+|+|||+.++.+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999887655
No 46
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.30 E-value=0.0016 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|+|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 47
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.28 E-value=0.0022 Score=40.83 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...|+|+|.+|||||+.++.+...|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457799999999999999999988764
No 48
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.24 E-value=0.002 Score=42.06 Aligned_cols=24 Identities=46% Similarity=0.720 Sum_probs=21.1
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.|.|++|+|||+..+.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987763
No 49
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.24 E-value=0.0022 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|.+|||||+.++.+.+.|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998555
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.22 E-value=0.0053 Score=39.53 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.|+|.|++|+|||..++.+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999998887765
No 51
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.22 E-value=0.0033 Score=46.51 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=29.6
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+++.++ ......|+|+|.+|||||+..+.++.++..
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 556664 366778999999999999999999988753
No 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.21 E-value=0.0022 Score=40.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|.+|||||+.++.+.+.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999988765
No 53
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.17 E-value=0.004 Score=43.59 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....|.|+|.+|||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5567899999999999999999887664
No 54
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.14 E-value=0.0019 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|+|.|-+|||||+.++.+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988765
No 55
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.13 E-value=0.0025 Score=42.29 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=17.1
Q ss_pred CCceEEecCCCCCccchhhhhhH-HhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVI-QYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l-~~l 61 (79)
....|.|+|.+|||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46789999999999999999998 665
No 56
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.11 E-value=0.0011 Score=45.15 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..+.+...+..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46788999999999999999988766543
No 57
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.11 E-value=0.0028 Score=41.40 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|.|.|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999988755
No 58
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.09 E-value=0.0029 Score=40.14 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|+|.+|||||+.++.+.+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999987654
No 59
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.0011 Score=43.51 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.1
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468899999999999999999998754
No 60
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.08 E-value=0.0045 Score=43.92 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.9
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+...|.|.|.||||||+.++.+...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356788999999999999999999887754
No 61
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.07 E-value=0.0033 Score=41.04 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....|.|+|.+|||||+.++.+...+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988764
No 62
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.07 E-value=0.0035 Score=44.75 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
-...+++.|.|.||||||+.++.++.++
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678999999999999999999999887
No 63
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.05 E-value=0.0026 Score=42.87 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.||+|||+..+.+++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999998754
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.04 E-value=0.006 Score=42.39 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.6
Q ss_pred cCCCc--eEEecCCCCCccchhhhhhHHhHh
Q psy17856 34 DREDQ--SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 34 ~~~~Q--sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..... +++|+|++|+|||..++.+.+.+.
T Consensus 39 ~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 39 NPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp STTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45556 899999999999999999887664
No 65
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.02 E-value=0.0024 Score=39.32 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=17.6
Q ss_pred eEEecCCCCCccchhhhhh
Q psy17856 39 SILCTGESGAGKTENTKKV 57 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~ 57 (79)
.|+|+|.+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 66
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.01 E-value=0.0034 Score=40.14 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.7
Q ss_pred CCceEEecCCCCCccchhhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKK 56 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~ 56 (79)
+...+.|.|.||||||+.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467889999999999999994
No 67
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.01 E-value=0.0028 Score=40.41 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|+|.|-+|||||+.++.+.+.|-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 489999999999999999988764
No 68
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.00 E-value=0.0028 Score=40.53 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+.|+|.|.+|||||+.++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999875
No 69
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.00 E-value=0.0011 Score=42.93 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.9
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|+|.|.+|||||+.++.+.++|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998885
No 70
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.98 E-value=0.0038 Score=43.87 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=25.8
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+....|.|.|.||||||+.++.+...|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678899999999999999999988864
No 71
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.0039 Score=39.82 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|.|.+|||||+.++.+...|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999988775
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.97 E-value=0.006 Score=41.25 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=24.0
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
......++|.|++|+|||..++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4567889999999999999999887753
No 73
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.97 E-value=0.0031 Score=39.45 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
No 74
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.96 E-value=0.0049 Score=44.64 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..++.+.. .....|+|+|.+|||||+..+.++.++...
T Consensus 113 ~~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 113 EVFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 35666644 344589999999999999999999988654
No 75
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0057 Score=42.60 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=27.4
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.........+++|+|++|.|||..++.+.+.+..
T Consensus 38 ~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 38 YFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp HHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3334566779999999999999999999887643
No 76
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.95 E-value=0.0052 Score=39.62 Aligned_cols=29 Identities=31% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.++|.|++|+|||+.++.++..+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999998876654
No 77
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.92 E-value=0.0033 Score=39.21 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887754
No 78
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.92 E-value=0.0033 Score=41.27 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.+|||||+.++.++....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999885443
No 79
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.92 E-value=0.0043 Score=41.69 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+...|.|.|.+|||||+.++.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999988765
No 80
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0026 Score=42.03 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+...|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44679999999999999999887654
No 81
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.92 E-value=0.0034 Score=39.75 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|-+|||||+.++.+.+.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999987644
No 82
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.90 E-value=0.0046 Score=41.79 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988776
No 83
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.90 E-value=0.0066 Score=43.49 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+...|.|.|.+|+|||+.++.+..++...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999998876543
No 84
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.90 E-value=0.0034 Score=39.94 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|.|-+|||||+.++.+.+.|.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998873
No 85
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.89 E-value=0.0033 Score=39.11 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+..|+|.||+|+|||..++.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 567789999999999999999876643
No 86
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.87 E-value=0.0022 Score=46.19 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=25.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
+..+.|+|+|.+|||||+..+.++.++..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35678999999999999999999988754
No 87
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.86 E-value=0.0042 Score=44.94 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=26.9
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
-...+.|+|+|.+|||||+..+.++.++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 4567789999999999999999999987654
No 88
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.84 E-value=0.0037 Score=39.60 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|.+|||||+.++.+.+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999887654
No 89
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.0038 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.++|.|++|+|||+.++.+...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 399999999999999999988553
No 90
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.84 E-value=0.0037 Score=39.70 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999887654
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.84 E-value=0.0034 Score=40.71 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+.++.++..+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999886544
No 92
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.83 E-value=0.0039 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|+|-+|||||+.++.+.+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999987654
No 93
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.82 E-value=0.003 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|.|+|.+|||||+.++.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999988764
No 94
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.81 E-value=0.0023 Score=43.62 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|++|||||+..+.+...+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788999999999999999998876643
No 95
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.81 E-value=0.0034 Score=41.89 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.+...|.|.|.+|||||+.++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999999988775
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.81 E-value=0.0066 Score=42.02 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....++|.|++|+|||..++.+...+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4578999999999999999999887753
No 97
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.80 E-value=0.0035 Score=39.20 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.9
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..|+|.|-+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999887
No 98
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.80 E-value=0.0048 Score=43.00 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|.||||||+.++.+.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999988654
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.79 E-value=0.0058 Score=43.26 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.+.|.|.|.+|+|||+.++.+..++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999887643
No 100
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0057 Score=43.18 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.+.|.|.|.+|+|||+.++.+..++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45788999999999999999999887643
No 101
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.78 E-value=0.004 Score=39.87 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.1
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|+|.|-+|||||+.++.+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999887643
No 102
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.76 E-value=0.0042 Score=39.28 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.9
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|+|-+|||||+.++.+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998876
No 103
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.76 E-value=0.0039 Score=42.43 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999877654
No 104
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.76 E-value=0.0035 Score=39.49 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|||||+.++.+.+.|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987654
No 105
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.76 E-value=0.0073 Score=40.45 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+.+++ ...+.+.|.|++|||||+..+.+.-. ...++
T Consensus 15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 44454 35678899999999999999998877 44443
No 106
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.75 E-value=0.0041 Score=40.44 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|-+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999987654
No 107
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.75 E-value=0.0048 Score=39.20 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|.+|||||+.++.+.+.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999987655
No 108
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.75 E-value=0.0052 Score=40.29 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=23.2
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..|+|+|.||+|||+.++.++..|..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 56899999999999999999988764
No 109
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.74 E-value=0.005 Score=41.83 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.....|.|.|.+|||||+.++.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998843
No 110
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.73 E-value=0.0057 Score=40.52 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887754
No 111
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.73 E-value=0.0043 Score=39.13 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=20.8
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|.|-+|||||+.++.+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887654
No 112
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.72 E-value=0.0057 Score=40.94 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999887654
No 113
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.68 E-value=0.0061 Score=39.36 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.5
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
......|+|+|-+|||||+.++.+.+.|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999988765
No 114
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.66 E-value=0.002 Score=44.12 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..+.+...+..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35778999999999999999998876543
No 115
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.64 E-value=0.0045 Score=42.69 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678899999999999999999887653
No 116
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.63 E-value=0.0066 Score=41.30 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...++|.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999888763
No 117
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.62 E-value=0.0058 Score=39.35 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...|+|+|-+|||||+.++.+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999988764
No 118
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.62 E-value=0.0042 Score=39.56 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|+|-+|||||+.++.+.+.|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999988765
No 119
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.61 E-value=0.011 Score=39.84 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...-.|+|+|-+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355679999999999999999998755
No 120
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.60 E-value=0.0027 Score=44.15 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||||||+..+.+...+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5678899999999999999999887654
No 121
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.60 E-value=0.0062 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.|.|.|.+|+|||+..+.+...+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4688999999999999999998876
No 122
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.59 E-value=0.0055 Score=42.38 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.+.+.+.|.|++|||||+..|.+.-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999998876
No 123
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.58 E-value=0.0055 Score=39.47 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...|+|+|-+|||||+.++.+.+.|-
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988764
No 124
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.57 E-value=0.0054 Score=41.93 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.+.+.+.|.|++|||||+..|.+.-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778899999999999999998875
No 125
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.55 E-value=0.0028 Score=43.76 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..|.+.-.+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788899999999999999988776543
No 126
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.55 E-value=0.0077 Score=46.10 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.|+|.|.||||||+..+.+...|.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4678899999999999999999988775
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.55 E-value=0.0046 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|+|-+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999987644
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.0062 Score=41.98 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.4
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....+.++|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455789999999999999999998876643
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.51 E-value=0.0062 Score=42.07 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.8
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.....+++|+|++|+|||..++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999887744
No 130
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.50 E-value=0.0019 Score=46.09 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...+.+.|.|+||||||+..+.++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 567889999999999999999998876543
No 131
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.49 E-value=0.0071 Score=41.13 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887654
No 132
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.49 E-value=0.0066 Score=38.87 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|.|+|.+|||||+.++.+.+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999887643
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.49 E-value=0.011 Score=40.29 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+....|+|.|++|+|||..++.+.+.+...
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3455679999999999999999988887543
No 134
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.48 E-value=0.0055 Score=42.56 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..|.+.-.+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 46788999999999999999998776543
No 135
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.47 E-value=0.0061 Score=38.90 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCceEEecCCCCCccchhhhhhHHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+...|.|+|.+|||||+.++.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4467899999999999999987653
No 136
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.47 E-value=0.0027 Score=43.66 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..|.+.-.+..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35778899999999999999998776543
No 137
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.46 E-value=0.0045 Score=41.68 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|+||||||+..|.+.-.+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567889999999999999998876554
No 138
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.45 E-value=0.0027 Score=44.07 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..|.+.-.+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45788899999999999999998876543
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.45 E-value=0.0088 Score=43.51 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+.+.|.|.|.+|+|||+.++.+..++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 46789999999999999999999887643
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.45 E-value=0.0057 Score=41.39 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|.+|||||+.++.+.+.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678999999999999999988765
No 141
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.42 E-value=0.0064 Score=41.57 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+ +.+.|.|++|||||+..|.+.-.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45 78899999999999999998876543
No 142
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.42 E-value=0.006 Score=42.13 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4677899999999999999998876553
No 143
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.42 E-value=0.0069 Score=38.76 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..-|+|.|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998876
No 144
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.41 E-value=0.0028 Score=44.37 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..|.+.-.+..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 45788999999999999999998876543
No 145
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.41 E-value=0.0028 Score=42.84 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3577899999999999999999876654
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.39 E-value=0.0045 Score=38.50 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
..+..|+|.|++|+|||..++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45677999999999999999887654
No 147
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.38 E-value=0.0072 Score=41.73 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.0
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|.+|||||+..+.+...|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999987743
No 148
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.38 E-value=0.0082 Score=40.48 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+...+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 467789999999999999999887654
No 149
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.37 E-value=0.0072 Score=40.38 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999887654
No 150
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.36 E-value=0.0064 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999998876554
No 151
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.35 E-value=0.014 Score=40.71 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...++|+|++|.|||..++.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999988774
No 152
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.35 E-value=0.0077 Score=39.65 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=23.6
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..|+|+|.+|||||+.+..++..|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 468999999999999999999988643
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.35 E-value=0.0088 Score=38.40 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
....|+|+|-+|||||+.++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988776
No 154
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.34 E-value=0.0059 Score=40.09 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.3
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988765
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.34 E-value=0.0083 Score=38.61 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|-+|||||+.++.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999887654
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.34 E-value=0.017 Score=40.04 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=25.9
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+....++|+|+.|.|||..++.+.+.+.+
T Consensus 34 ~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455678999999999999999999887754
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.31 E-value=0.011 Score=43.77 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.8
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.++....-.+++|.|++|+|||+.++.+.+.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 344556666666899999999999999999988765
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.011 Score=42.48 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=30.5
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+..+...+..+|+|+|.+|.|||..++.+++-|..
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345556788999999999999999999999988854
No 159
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.30 E-value=0.0064 Score=40.85 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 456789999999999999999887654
No 160
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.29 E-value=0.0058 Score=41.26 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+.-.+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567889999999999999999876553
No 161
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.28 E-value=0.0062 Score=42.26 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
.+.|.|+||+|||+..+.+...+...++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 5788999999999999999987655443
No 162
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.26 E-value=0.0069 Score=41.18 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|++|||||+..|.+.-.+..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35678899999999999999998776543
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.25 E-value=0.011 Score=45.17 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+.|.|.|.+|+|||++++.+..++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 56789999999999999999999887644
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.016 Score=39.21 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.++.......++|+|+.|.|||..++.+.+.+.
T Consensus 38 ~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 38 KHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3444445555699999999999999999887763
No 165
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.20 E-value=0.0072 Score=42.52 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.++|+|.+|||||+..+.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 568999999999999999988753
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.014 Score=40.08 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+..+.......++|.|++|+|||..++.+.+.+..
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444443344999999999999999999888753
No 167
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.20 E-value=0.0072 Score=40.81 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
....|+|+|.||+|||+.+..+++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999887775
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.19 E-value=0.006 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|.|+|.+|||||+.++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999998876
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.18 E-value=0.011 Score=38.77 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.6
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|-.|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999987765
No 170
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.17 E-value=0.0037 Score=43.00 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567889999999999999998876654
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.018 Score=40.20 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=24.8
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+..++-..++|.|++|+|||+.++.+.+.+.
T Consensus 40 ~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 40 FVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444333489999999999999999988775
No 172
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.16 E-value=0.0077 Score=40.35 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+...+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999887754
No 173
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.16 E-value=0.0038 Score=43.66 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|++|||||+..|.+.-.+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 357788999999999999999988766433
No 174
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.15 E-value=0.0055 Score=43.65 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=24.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.++|.|.+|||||+..+.++.++..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4567999999999999999999988754
No 175
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.15 E-value=0.01 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 176
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.14 E-value=0.0097 Score=40.47 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|+|+|-+|||||+.++.+.+.|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999988754
No 177
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.13 E-value=0.0059 Score=46.20 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.|+|+|.+|||||+..+.++.++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455699999999999999999988774
No 178
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.13 E-value=0.013 Score=40.94 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=19.2
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.-.|.|+|-+|||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999887654
No 179
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.12 E-value=0.011 Score=40.45 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=26.5
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
-...+.++|.|.+|+|||+.++.+...++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3577889999999999999999988877654
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.12 E-value=0.0088 Score=40.74 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999987654
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.12 E-value=0.012 Score=39.75 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=23.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+....++|+|++|+|||..++.+.+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 34444599999999999999999988763
No 182
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.07 E-value=0.0083 Score=41.27 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567889999999999999999876653
No 183
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.06 E-value=0.0082 Score=39.27 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
.|+|.|-+|||||+.++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988754
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.04 E-value=0.011 Score=40.48 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|+|++|+|||..++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887755
No 185
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.96 E-value=0.011 Score=40.19 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.2
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 4469999999999999999887654
No 186
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.96 E-value=0.011 Score=39.27 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEecCCCCCccchhhhhhHHhH
Q psy17856 39 SILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l 61 (79)
-|+|.|-+|||||+.++.+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988765
No 187
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.94 E-value=0.033 Score=42.34 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=24.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....|+|+|-+|||||+..+.+-+.|-.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999888764
No 188
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.027 Score=38.09 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+.......++|+|++|.|||..++.+.+.+.
T Consensus 35 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 35 QIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 334444433499999999999999999988764
No 189
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.91 E-value=0.0086 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|+|.+|||||+.++.+-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998765
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.91 E-value=0.019 Score=39.67 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|+|++|+|||..++.+.+.+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 455689999999999999999886553
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.90 E-value=0.013 Score=37.72 Aligned_cols=33 Identities=15% Similarity=-0.034 Sum_probs=25.4
Q ss_pred HHHHhHh--cCCCceEEecCCCCCccchhhhhhHH
Q psy17856 27 PDQVYLS--DREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 27 Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+...++. -...+.++|.|++|+|||+.++.++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444553 24677899999999999999988876
No 192
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.012 Score=43.91 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.7
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
-...+.+.|.|.+|||||+.+|.+..++...++
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 357788999999999999999999998876665
No 193
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.88 E-value=0.012 Score=43.32 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|+||||||+..|.+.-.+...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 457788999999999999999988766433
No 194
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.82 E-value=0.016 Score=39.00 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...-|+|.|.+|||||+.++.+.+.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567999999999999999999998863
No 195
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.82 E-value=0.016 Score=40.71 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....++|.|.+|+|||+.++.+...+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999998876
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.80 E-value=0.011 Score=38.23 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.8
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|.|+|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.79 E-value=0.022 Score=36.90 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.+........|+|.|.+|+|||+....++..+
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444556778999999999999999888764
No 198
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.78 E-value=0.027 Score=39.43 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCCceEEe--cCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILC--TGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvi--sGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.++| +|+.|.|||..++.+.+.+..
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46778999 999999999999998876643
No 199
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.77 E-value=0.0062 Score=42.30 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.5
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.+.|.|++|||||+..|.+.-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6788999999999999999988766
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.76 E-value=0.024 Score=41.65 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...++|.|++|+|||+.++.+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999887753
No 201
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.73 E-value=0.015 Score=40.09 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|.|++|+|||..++.+.+.+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 445699999999999999999887664
No 202
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.70 E-value=0.0092 Score=45.20 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.+.|.|+||||||+..+.+...+...+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 397 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5678899999999999999999998775443
No 203
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.70 E-value=0.024 Score=43.13 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCCCccccccc---cchHHHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 12 IPDEHIHYEVD---LTGGPDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 12 ~~~phi~~~ya---ia~~Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..+|+. |. ++......+. ..+....|+|+|-+|||||+.++.+.+.|.
T Consensus 346 ~~~p~~---~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 346 RKLPEW---FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCCCTT---TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCcc---ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 356777 76 5543333331 223456789999999999999999888764
No 204
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.69 E-value=0.011 Score=41.64 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4677889999999999999999876654
No 205
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.69 E-value=0.015 Score=41.22 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+.+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999988765
No 206
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.69 E-value=0.02 Score=40.58 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....|+|.|.+|+|||+.++.+..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4567899999999999999999988764
No 207
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.68 E-value=0.011 Score=41.98 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.7
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.+.+.|.|.||||||+.++.+...+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 67889999999999999999988765443
No 208
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.64 E-value=0.018 Score=44.07 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....|+|+|-+|||||+.++.+-+.|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999887765
No 209
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.62 E-value=0.015 Score=37.92 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 27 PDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 27 Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
....++.. .+.+.++|.|++|+|||+.++.++..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34445533 46778999999999999999988764
No 210
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.60 E-value=0.015 Score=42.54 Aligned_cols=29 Identities=28% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|+||||||+..|.+.-.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 46778899999999999999988766543
No 211
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.59 E-value=0.018 Score=42.74 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=36.1
Q ss_pred cccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 19 YEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 19 ~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.|.....+...++.-.+.|.+.|.|.||+|||+..+.+..++.
T Consensus 139 ~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 139 HVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 33543457888887778999999999999999999999888763
No 212
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.58 E-value=0.014 Score=40.78 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+..|+|.||+|+|||..++.+....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 567889999999999999998887643
No 213
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.58 E-value=0.026 Score=41.20 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=29.0
Q ss_pred chHHHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 24 TGGPDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 24 a~~Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.+. .-.....|+|.|.+|+|||+.++.+...+
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344555543 34667899999999999999999988754
No 214
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.57 E-value=0.0086 Score=45.48 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|+||||||+..+.+...+...
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 567889999999999999999998876543
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.56 E-value=0.026 Score=40.15 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.2
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
......+.|.|.+|+|||+..+.++..+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467788999999999999999999987754
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.56 E-value=0.014 Score=42.62 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+.+.+.|.|+||||||+..|.+.-.+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 456788999999999999999988766443
No 217
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.55 E-value=0.016 Score=42.11 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.||||||+..|.+.-.+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 45778899999999999999998876543
No 218
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.54 E-value=0.018 Score=38.78 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...|.|+|-+|||||+.++.+.+.|-
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999998877543
No 219
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.51 E-value=0.017 Score=42.10 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...+.+.|.|.||||||+..|.+.-.+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 45778899999999999999998876543
No 220
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.51 E-value=0.014 Score=36.93 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+|.|++|+|||+..+.+.-.|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999988766544
No 221
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.48 E-value=0.022 Score=37.77 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|-.|||||+.++.+.+.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999987765
No 222
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.43 E-value=0.011 Score=45.09 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=25.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
++.+.+.|.|+||||||+..+.++..+...
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 567899999999999999999998776543
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.43 E-value=0.018 Score=40.58 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999987765
No 224
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.41 E-value=0.015 Score=38.27 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|.|-.|||||+.++.+.+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987765
No 225
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.41 E-value=0.018 Score=42.05 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.||||||+..|.+.-.+..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 45778899999999999999998876543
No 226
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.41 E-value=0.024 Score=39.50 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999998887653
No 227
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.37 E-value=0.025 Score=37.56 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|.|+|.+|||||+.++.+...|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999887643
No 228
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.36 E-value=0.0072 Score=45.80 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||||||+..+.++..+...+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 5678899999999999999999888765433
No 229
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.35 E-value=0.018 Score=41.86 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.||||||+..|.+.-.+..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 35678899999999999999998766543
No 230
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.33 E-value=0.0084 Score=45.43 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||||||+..+.+...+...+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence 5678899999999999999999988765433
No 231
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.33 E-value=0.021 Score=40.50 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....|+|.|++|+|||..++.+...+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999887654
No 232
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.32 E-value=0.018 Score=39.52 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-.|.|.|.+|||||+.++.+.+.|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999887654
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.30 E-value=0.043 Score=40.53 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=27.0
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.++..+....++|.|++|.|||..++.+.+.+.
T Consensus 194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 344456677899999999999999999888764
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.28 E-value=0.042 Score=42.41 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=27.8
Q ss_pred HhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.++..+....++|.|++|+|||..++.+.+.+..
T Consensus 200 ~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 200 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3444567788999999999999999998887743
No 235
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.27 E-value=0.039 Score=36.62 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=24.5
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
+.+-+.+...+.. ++.+++.|.+|+|||+....++
T Consensus 63 ~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 63 KKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 4444555555543 4679999999999998766544
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.27 E-value=0.017 Score=39.39 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEecCCCCCccchhhhhhHHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
..|+|.|-+|||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 237
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.27 E-value=0.02 Score=41.77 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|-+|||||+.++.+.+.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999987654
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.25 E-value=0.022 Score=37.11 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....++|.|++|+|||+.+..++..++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999877766554
No 239
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.25 E-value=0.019 Score=41.79 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.||||||+..|.+.-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3567889999999999999999876654
No 240
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.19 E-value=0.014 Score=42.17 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+.+.+.|.|.||||||+..|.+.-.+..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 45678899999999999999998766543
No 241
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.17 E-value=0.021 Score=38.32 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..-|+|.|-+|||||+.++.+.++|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999998864
No 242
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.17 E-value=0.027 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|.|.|.||||||+.++.+...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999877664
No 243
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.16 E-value=0.015 Score=42.73 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.||||||+..+.+.-.+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4678899999999999999999887664
No 244
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.15 E-value=0.027 Score=36.39 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...-.|+|.|.+|+|||+.+..++..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345578999999999999999988765
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.14 E-value=0.023 Score=39.31 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+....|+|.|++|+|||..++.+.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999999999999999888765
No 246
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.14 E-value=0.034 Score=39.01 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=27.8
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.++-...++|+|+.|.|||+.++.+.+.+.+..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 345677899999999999999999999886543
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.13 E-value=0.032 Score=39.63 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+.|+|+|.+|+|||+.+..+..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999998888643
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.08 E-value=0.028 Score=39.43 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.|+|.|++|+|||..++.+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 58899999999999999998887766
No 249
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.03 E-value=0.0095 Score=45.34 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
++.+.+.|.|+||||||+..+.++..+...+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 5678899999999999999999988765433
No 250
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.02 E-value=0.021 Score=38.89 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+..-|+|.|-+|+|||+.++.+.+.|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45579999999999999999999998654
No 251
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.01 E-value=0.026 Score=38.41 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+.+.++|.|.+|+|||+.++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999887554
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.99 E-value=0.031 Score=39.26 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.|+|.|.+|+|||+.+..+..++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988764
No 253
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.97 E-value=0.056 Score=37.13 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=23.7
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..+....+++.|++|.|||..++.+.+.+
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 34556778999999999999999887665
No 254
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.96 E-value=0.021 Score=41.14 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.9
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...|+|.|+||+|||+.+..+++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 57899999999999999988876
No 255
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.94 E-value=0.028 Score=39.99 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+...+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999888765
No 256
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.93 E-value=0.029 Score=39.36 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+...+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999988765
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.88 E-value=0.033 Score=38.95 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=26.0
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..++..-..+.+.|.|.||+|||+..+.++ .+.
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 344444567889999999999999999988 443
No 258
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.81 E-value=0.027 Score=42.62 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999886553
No 259
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.80 E-value=0.025 Score=40.68 Aligned_cols=43 Identities=19% Similarity=-0.016 Sum_probs=35.6
Q ss_pred ccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 20 EVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 20 ~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|.....|...++.-.+.|.+.|.|.+|+|||+..+.+...+.
T Consensus 54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3544557888887778999999999999999999999887753
No 260
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.80 E-value=0.025 Score=36.73 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=20.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|||||+.++.+.+.|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999998877643
No 261
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.78 E-value=0.016 Score=47.97 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=26.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..|.|-|.|+||||||+..+.+++++-..+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1133 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCCC
Confidence 5688999999999999999999998875443
No 262
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.77 E-value=0.028 Score=37.58 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|+|.|..||||++.++.+.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999988765
No 263
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.75 E-value=0.015 Score=42.13 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|.||||||+..|.+.-.+.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567889999999999999999876654
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.75 E-value=0.028 Score=37.09 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.9
Q ss_pred CceEEecCCCCCccchhhhhhHHh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.-.|.|+|-+|||||+.++.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999988775
No 265
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.74 E-value=0.025 Score=38.98 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.0
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|.+|+|||+.++.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4559999999999999999887643
No 266
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.72 E-value=0.026 Score=35.99 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.8
Q ss_pred eEEecCCCCCccchhhhhhHHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~ 60 (79)
.|+|.|.+|+|||+..+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4688999999999999888753
No 267
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.68 E-value=0.028 Score=38.50 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|+|.||+|||+.+..+.+.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45779999999999999998877654
No 268
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.68 E-value=0.023 Score=40.93 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
....|+|+|+||+|||+.+-.+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999876654
No 269
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.67 E-value=0.046 Score=41.22 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....++|.|++|+|||+.++.+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999988776
No 270
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.63 E-value=0.019 Score=36.69 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=23.5
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+.-.....|+|.|.+|+|||+..+.++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456678999999999999999988753
No 271
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.61 E-value=0.036 Score=39.56 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+|+|.|++|.|||..++.+...+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999998886543
No 272
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.60 E-value=0.035 Score=39.60 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+..++|.|.+|+|||+..+.++..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999999886654
No 273
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.59 E-value=0.029 Score=42.40 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.8
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+.+.|.|+||||||+..+.+.-.+...+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 7889999999999999999887765443
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.52 E-value=0.024 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.0
Q ss_pred eEEecCCCCCccchhhhhhHHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~ 60 (79)
.|+|.|.+|+|||+..+.++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.52 E-value=0.036 Score=40.07 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.2
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|........|+|+|.+|+|||+.+..+.+.+-
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 33344556789999999999999999887764
No 276
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.51 E-value=0.027 Score=37.86 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
.-|+|.|-.|||||+.++.+.++|....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4589999999999999999999987543
No 277
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.48 E-value=0.089 Score=35.69 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=26.7
Q ss_pred chHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 24 TGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 24 a~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
-+.....+.. -.++.++|+|+.|.|||...+.+.+.+
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 3444444444 333789999999999999998887653
No 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.47 E-value=0.027 Score=42.02 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHhHh--cCCCceEEecCCCCCccchhhhhhH
Q psy17856 27 PDQVYLS--DREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 27 Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
+...+.- -.+.+.++|.|++|||||+.++.++
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 4444443 2578899999999999999999963
No 279
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.47 E-value=0.028 Score=38.52 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..-|+|.|-+|||||+.++.+.++|...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4679999999999999999999988654
No 280
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.42 E-value=0.039 Score=41.12 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...++|+|++|+|||..++.+.+.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999888765
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.41 E-value=0.073 Score=41.24 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=26.3
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++..+....++|.|++|.|||..++.+.+.+.
T Consensus 195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 34446667899999999999999999888774
No 282
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.37 E-value=0.022 Score=38.44 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
++..-|+|.|-.|||||+.++.+.+.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999988873
No 283
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.37 E-value=0.047 Score=37.16 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+..-|+|.|-+|+|||+.++.+.+.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45667999999999999999999998876
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.37 E-value=0.028 Score=42.70 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....++|.|++|+|||+.++.+...+.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988764
No 285
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.37 E-value=0.031 Score=37.16 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.-|+|.|-.|||||+.++.+.+.|.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999998873
No 286
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.34 E-value=0.027 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=18.5
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|+|||+..+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999988875
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.31 E-value=0.052 Score=37.93 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
..+.|.+.|.+|+|||+.+..+...+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45688899999999999999998887643
No 288
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.24 E-value=0.036 Score=33.55 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=18.4
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||+..+.++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999988774
No 289
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.24 E-value=0.058 Score=42.07 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+...|+|+|-+|||||+.++.+-+.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999988773
No 290
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.18 E-value=0.041 Score=35.24 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.3
Q ss_pred cCCCceEEecCCCCCccchhhhhhHH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.++.-.|++.|.+|+|||...+.++.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455689999999999999888774
No 291
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.13 E-value=0.036 Score=42.12 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
-++.+.+.|.|++|||||+..|.+.-.+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35678899999999999999999887553
No 292
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.06 E-value=0.027 Score=38.91 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.6
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...|+|+|-+|||||+.++.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988763
No 293
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.00 E-value=0.055 Score=36.63 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+.-.|+|.|..||||++.++.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567889999999999999988765
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.00 E-value=0.074 Score=38.99 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=27.2
Q ss_pred cchHHHHHhH---hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 23 LTGGPDQVYL---SDREDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 23 ia~~Ay~~m~---~~~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+++.+...+- ...+-.+|+|.|.+|+|||+..+.+...|
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455544442 23444569999999999999998877654
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.99 E-value=0.038 Score=40.11 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|+|+|.+|||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3689999999999999999888764
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.97 E-value=0.042 Score=33.13 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478899999999999888774
No 297
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.96 E-value=0.048 Score=40.71 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=22.6
Q ss_pred cCCCce--EEecCCCCCccchhhhhhHHhH
Q psy17856 34 DREDQS--ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 34 ~~~~Qs--IvisGeSGsGKTe~~k~~l~~l 61 (79)
-+.... |.|.|++|+|||+..+.++...
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 356666 8999999999999999987653
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.87 E-value=0.044 Score=32.96 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999888763
No 299
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.85 E-value=0.056 Score=40.55 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
..+..|+|.|++|+|||..++.+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 56778999999999999999887654
No 300
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.81 E-value=0.04 Score=37.25 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..-|+|.|-+|+|||+.++.+.+.|..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999998864
No 301
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.80 E-value=0.042 Score=33.99 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.5
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||+..+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999988864
No 302
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.79 E-value=0.058 Score=40.68 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|++.|-+|||||+.++.+.++|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999988773
No 303
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.034 Score=42.97 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++.+.+.|.|++|||||+..|.+.-.+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 57889999999999999999988876543
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.74 E-value=0.047 Score=32.81 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999877764
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.73 E-value=0.047 Score=32.98 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999887763
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.72 E-value=0.044 Score=34.13 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||+..+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999988874
No 307
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.71 E-value=0.058 Score=39.70 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|++.|.+|+|||+.++.+.+.|-
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999988764
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.65 E-value=0.041 Score=32.96 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||+..+.++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999887764
No 309
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.64 E-value=0.049 Score=33.39 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.3
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999888764
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.63 E-value=0.045 Score=34.33 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
....|+|.|.+|+|||+..+.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999988875
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.63 E-value=0.048 Score=38.98 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....++.. ...+.+.|.|++|+|||+.++.++-.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455543 467888999999999999999888665
No 312
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.59 E-value=0.051 Score=32.84 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478899999999999888764
No 313
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.56 E-value=0.026 Score=42.86 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
++.+.+.|.|++|||||+..+.+...+...
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356788999999999999999988765433
No 314
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.54 E-value=0.1 Score=33.92 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.++|.|++|+|||..+-.++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999988765543
No 315
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.53 E-value=0.042 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.||+|||+..+.+...+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 3467889999999999999998876554
No 316
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.51 E-value=0.059 Score=42.61 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.....|+|.|++|+|||+.++.+...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
No 317
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.50 E-value=0.052 Score=32.97 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999887764
No 318
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.063 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=21.1
Q ss_pred cCCCceEEecCCCCCccchhhhhhHH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
....-.|++.|.+|+|||...+.++.
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34455789999999999999888764
No 319
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.43 E-value=0.054 Score=32.81 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999888764
No 320
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.39 E-value=0.094 Score=35.56 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEecCCCCCccchhhhhhHHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
+.++|+|+.|.|||...+.+.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 78999999999999999888753
No 321
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.38 E-value=0.055 Score=33.17 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999888763
No 322
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.37 E-value=0.08 Score=41.73 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=26.8
Q ss_pred hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
++..+....++|.|++|+|||..++.+.+.+..
T Consensus 185 ~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 185 ILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 334566678999999999999999999887754
No 323
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.36 E-value=0.055 Score=33.48 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.1
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|++.|.+|+|||...+.++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999888775
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.052 Score=32.85 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999888764
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.34 E-value=0.046 Score=33.45 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.9
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.++.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999888775
No 326
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.30 E-value=0.037 Score=42.65 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.+.|.|++|||||+..|.+.-.+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4678899999999999999998876554
No 327
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.057 Score=33.80 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.5
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999888764
No 328
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.23 E-value=0.055 Score=33.02 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 588999999999999888763
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.20 E-value=0.06 Score=33.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999887764
No 330
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.18 E-value=0.052 Score=41.67 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+.+.+.|.|.||||||+..+.++
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 367888999999999999998764
No 331
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.18 E-value=0.061 Score=33.09 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4589999999999999888763
No 332
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.17 E-value=0.061 Score=32.83 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.4
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999888764
No 333
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.15 E-value=0.069 Score=39.15 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....|+|.|++|+|||..++.+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999888765
No 334
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.13 E-value=0.063 Score=32.43 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999888764
No 335
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.10 E-value=0.027 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA 66 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~ 66 (79)
+..+.+.|.|+||||||+..+.+++++...++
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 57788999999999999999999988765443
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.04 E-value=0.048 Score=33.87 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.4
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999888764
No 337
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.04 E-value=0.11 Score=38.79 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|++.|.+|+|||+.+..+..+|..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999988864
No 338
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.03 E-value=0.057 Score=35.64 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.3
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||+..+.++.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999988874
No 339
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.03 E-value=0.12 Score=36.23 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|++.|.+|+|||+.+..+..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999999999888764
No 340
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.01 E-value=0.066 Score=32.54 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.++.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999888753
No 341
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.00 E-value=0.055 Score=32.78 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478899999999999888763
No 342
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.98 E-value=0.065 Score=33.08 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999888764
No 343
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.064 Score=33.94 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=19.7
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+.--|+|.|.+|+|||...++++.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 445689999999999999887664
No 344
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.96 E-value=0.057 Score=38.88 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..|+|+|.+|+|||+.++.+.+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999888765
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.95 E-value=0.068 Score=32.34 Aligned_cols=20 Identities=40% Similarity=0.361 Sum_probs=17.7
Q ss_pred EEecCCCCCccchhhhhhHH
Q psy17856 40 ILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~ 59 (79)
|++.|.+|+|||...+.++.
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78899999999999988763
No 346
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.94 E-value=0.07 Score=38.84 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.||+|||++.+.++..+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 3567899999999999999999886554
No 347
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.93 E-value=0.031 Score=46.20 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=25.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
+..+.+.|.|+||||||+..+.++.++...
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 568889999999999999999998876543
No 348
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.91 E-value=0.064 Score=32.62 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=17.6
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
-|++.|.+|+|||...+.++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999988875
No 349
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.90 E-value=0.074 Score=35.00 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.6
Q ss_pred EEecCCCCCccchhhhhhHHhHhhh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
|+|-|--|||||+.++.+.++|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999754
No 350
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.87 E-value=0.064 Score=33.20 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||...+.++.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999888773
No 351
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.86 E-value=0.095 Score=41.32 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..++|.|++|.|||+.++.+.+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988774
No 352
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.83 E-value=0.15 Score=37.22 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
..++|.|..|+|||..++.++.+|....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999887543
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.77 E-value=0.072 Score=32.71 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999887764
No 354
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.77 E-value=0.079 Score=39.53 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHhHhc--CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 28 DQVYLSD--REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 28 y~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...++.. .+...++|.|++|+|||+.++.++..+.
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445543 4678899999999999999999887655
No 355
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.75 E-value=0.062 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
..|+|+|.+|+|||+.+..+.+.+-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999887664
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.74 E-value=0.11 Score=34.32 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.-.++++|..|+|||+.+..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456678999999999999999998876
No 357
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.73 E-value=0.072 Score=33.24 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.9
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||+..+.++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999888764
No 358
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.71 E-value=0.043 Score=41.51 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
+..+.+.|.|.+|||||+..|.+.-.+.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568889999999999999999876553
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.71 E-value=0.073 Score=32.71 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.++.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3578999999999999888764
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.66 E-value=0.072 Score=32.64 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.8
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999988763
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.64 E-value=0.054 Score=33.14 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999887763
No 362
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.64 E-value=0.077 Score=33.01 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+.+...+..-.|++.|.+|+|||...+.++.
T Consensus 10 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 10 KKMKQKERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -------CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred HhhcccCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3344324556789999999999999888764
No 363
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.094 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...-.|++.|.+|+|||...+.++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999888764
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.63 E-value=0.076 Score=33.30 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999887764
No 365
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.63 E-value=0.075 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|+|.|.+|+|||...+.++.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999888763
No 366
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.60 E-value=0.15 Score=35.81 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=27.8
Q ss_pred chHHHHHhHhcC--CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 24 TGGPDQVYLSDR--EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 24 a~~Ay~~m~~~~--~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-.+....+..+ +..+|+|.|..|+|||..++.+..++
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334445555543 24589999999999999999888763
No 367
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.57 E-value=0.076 Score=33.27 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.2
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999888763
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.57 E-value=0.065 Score=33.18 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|++.|.+|+|||...+.++.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999888763
No 369
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.55 E-value=0.072 Score=33.79 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.0
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+.-.|++.|.+|+|||...+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999888764
No 370
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.54 E-value=0.078 Score=33.08 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999888764
No 371
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.53 E-value=0.046 Score=42.10 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...+.+.|.|.+|||||+..|.+.-.+.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578899999999999999999887554
No 372
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.52 E-value=0.063 Score=39.66 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-+-.|+|.|+||+|||+..+.++...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 344567999999999999998887543
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.51 E-value=0.062 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.2
Q ss_pred ceEEecCCCCCccchhhhhhH
Q psy17856 38 QSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l 58 (79)
-.|++.|.+|+|||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999988776
No 374
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.49 E-value=0.06 Score=33.68 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||+..+.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45688999999999999988874
No 375
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.47 E-value=0.11 Score=40.17 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.7
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
..++|.|++|+|||+.++.+.+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999988776
No 376
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.46 E-value=0.028 Score=40.02 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=23.1
Q ss_pred hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 33 SDREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.-.+.+.+.|.|.||+|||+..+.++..+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 3345788999999999999999998866543
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.45 E-value=0.11 Score=38.55 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
....|++.|.+|+|||+.+..+..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999988864
No 378
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.45 E-value=0.061 Score=33.32 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378899999999999888764
No 379
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.42 E-value=0.05 Score=33.02 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.8
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|++.|.+|+|||...+.++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378899999999999887753
No 380
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.39 E-value=0.074 Score=39.03 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.5
Q ss_pred HHHHHhHhc--CCCceEEecCCCCCccchhhhhhH
Q psy17856 26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.....++.. .....++|.|++|+|||+.++.++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 334445533 367789999999999999998764
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.38 E-value=0.083 Score=33.22 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999999888764
No 382
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.38 E-value=0.059 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=19.7
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-+-.|+|.|++|+|||+..+.+..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 345678999999999999999764
No 383
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.35 E-value=0.09 Score=40.74 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.++|.|++|.|||+.++.+.+.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999988773
No 384
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.33 E-value=0.11 Score=31.81 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.8
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+.-.|++.|.+|+|||...+.++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345688999999999999888764
No 385
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.33 E-value=0.1 Score=38.24 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...|+|.|.+|+|||..++.+.+.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4689999999999999999888776
No 386
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.30 E-value=0.057 Score=37.27 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...++|.|++|.|||..++.+.+.+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3579999999999999999887654
No 387
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.28 E-value=0.087 Score=32.41 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999877763
No 388
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.28 E-value=0.11 Score=38.95 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+..|+|.|++|+|||..++.+...+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999998887543
No 389
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.27 E-value=0.093 Score=34.84 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEecCCCCCccchhhhhhHHhHh
Q psy17856 40 ILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l~ 62 (79)
|+|-|--|||||+.++.+.++|.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999884
No 390
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.25 E-value=0.078 Score=35.94 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.2
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.-.|+|+|.+||||++.++.+.+.+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 3468999999999999999988744
No 391
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.23 E-value=0.12 Score=33.08 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..-.|+|.|.+|+|||...+.++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999888775
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.15 E-value=0.091 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=19.0
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588899999999999887763
No 393
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.14 Score=31.96 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.2
Q ss_pred cCCCceEEecCCCCCccchhhhhhH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.++.-.|++.|.+|+|||...+.++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh
Confidence 3556678999999999999998877
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.13 E-value=0.089 Score=33.17 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=18.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||...+.++.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3578999999999999888764
No 395
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.094 Score=32.59 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999888764
No 396
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.00 E-value=0.093 Score=38.13 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....|+|+|.+|+|||+.+..+.+.|-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999888764
No 397
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.89 E-value=0.12 Score=39.05 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+..|+|.|++|+|||..++.+...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999887653
No 398
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.88 E-value=0.092 Score=33.17 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999887763
No 399
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.87 E-value=0.099 Score=32.72 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999888764
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.85 E-value=0.079 Score=32.73 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.9
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
.|+|.|.+|+|||...+.++
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999988876
No 401
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.81 E-value=0.062 Score=33.19 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.1
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
++.-.|++.|.+|+|||+..+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 455678999999999999988776
No 402
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.80 E-value=0.051 Score=44.99 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=26.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+..+.+.|.|+||||||+..+.+...+...+
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 5688899999999999999999998765443
No 403
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.80 E-value=0.093 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.6
Q ss_pred ceEEecCCCCCccchhhhhhHHhH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
-.|.|+|..|||||+..+.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999876643
No 404
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.76 E-value=0.09 Score=37.82 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..++.++|.|.+|+|||+..+.++..+..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999998888876654
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.76 E-value=0.11 Score=40.04 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAYVA 65 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~~s 65 (79)
+.+.|.|.+|||||+..+.+.-.+...+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 5688999999999999998887654433
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.75 E-value=0.089 Score=39.22 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEecCCCCCccchhhhhhHHhHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.|+|+|.||+|||+.+..+.+.+-
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 589999999999999999887764
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.75 E-value=0.092 Score=36.06 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHHHHhHhcC-CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 26 GPDQVYLSDR-EDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 26 ~Ay~~m~~~~-~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.+.+.++..- +..+|+|.|..|+|||..+..+++++.
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555542 235799999999999999988888763
No 408
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.71 E-value=0.084 Score=32.66 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=9.0
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
.|++.|.+|+|||...+.++
T Consensus 10 ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999988876
No 409
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.70 E-value=0.17 Score=36.02 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.5
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|.|.|.+|+|||+..+.++..+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 567899999999999999999987643
No 410
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.69 E-value=0.088 Score=32.90 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|++.|.+|+|||...+.++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3478899999999999888764
No 411
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.68 E-value=0.078 Score=33.15 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.2
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.--|+|.|.+|+|||...+.++.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999888764
No 412
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.67 E-value=0.1 Score=32.87 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..--|++.|.+|+|||...+.++.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 344689999999999999887764
No 413
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.66 E-value=0.2 Score=35.36 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
......|.|.|.+|+|||+..+.+...+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999877653
No 414
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.65 E-value=0.16 Score=35.55 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.1
Q ss_pred HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
...++. -...+.++|.|.+|+|||..+..+...++
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334443 25678899999999999999887776554
No 415
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.63 E-value=0.081 Score=35.26 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=19.8
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|+|.|.+|+|||+....++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999988874
No 416
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.63 E-value=0.11 Score=32.69 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.3
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 44588999999999999888764
No 417
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.49 E-value=0.089 Score=40.30 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEecCCCCCccchhhhhhHHhH
Q psy17856 40 ILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 40 IvisGeSGsGKTe~~k~~l~~l 61 (79)
|.|.|++|||||+..+.+...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999988765
No 418
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.46 E-value=0.16 Score=34.46 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCceEEecCCCCCccchhhhhhHHhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
....++++|+.|+|||+.+-.++.-+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999876555433
No 419
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.45 E-value=0.094 Score=33.07 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||...+.++.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999888764
No 420
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.43 E-value=0.095 Score=33.28 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..+.|.. .+.-.|+|.|.+|+|||...+.++.
T Consensus 15 ~~q~~~~-~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 15 YFQGMPL-VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCC-CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 3344433 3345688999999999999888774
No 421
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.41 E-value=0.085 Score=32.48 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|++.|.+|+|||...++++.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999888764
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.35 E-value=0.098 Score=32.88 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|+|||...+.++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999887764
No 423
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.34 E-value=0.15 Score=38.16 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.1
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|+++|.+|+|||+.+..+..+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999988864
No 424
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.31 E-value=0.27 Score=37.47 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.+..++|+|..|+|||+..+.++..|..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999887764
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.24 E-value=0.11 Score=32.68 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=19.2
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999888763
No 426
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.19 E-value=0.11 Score=32.65 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.2
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...-.|++.|.+|+|||...+.++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 3345689999999999999888764
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.18 E-value=0.11 Score=33.13 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.0
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|+|||...+.++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999887763
No 428
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.15 E-value=0.091 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||...+.++.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999888763
No 429
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.13 E-value=0.13 Score=42.17 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+.+.+.|.|++|||||+..|.+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467889999999999999999987
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.12 E-value=0.13 Score=31.87 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.2
Q ss_pred ceEEecCCCCCccchhhhhhHHh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
--|++.|.+|+|||...+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999998655443
No 431
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.10 E-value=0.099 Score=33.34 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.8
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||...+.++.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999988763
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.08 E-value=0.11 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.9
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..+.|.|++|+|||+..+.++..+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 37889999999999999998875543
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.08 E-value=0.15 Score=32.27 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...-.|+|.|.+|+|||...+.++.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3445689999999999999888763
No 434
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.07 E-value=0.13 Score=32.83 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=23.5
Q ss_pred HHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856 26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+++.+-...+.--|++.|.+|+|||...+.+.
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 344444223344568999999999999998876
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.03 E-value=0.11 Score=33.00 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999887764
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.01 E-value=0.11 Score=33.62 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.5
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 579999999999999988764
No 437
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.98 E-value=0.25 Score=34.68 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHhHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856 27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
..+..+..++...++|+|+.|.|||+.++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444555555789999999999999999888774
No 438
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.97 E-value=0.1 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=17.7
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
-|+|.|.+|+|||...+.++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998874
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.95 E-value=0.13 Score=32.50 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|+|.|.+|+|||...+.++.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999887763
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.91 E-value=0.22 Score=35.31 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.9
Q ss_pred cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
......|+|+|..|+|||+.+..+...+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345567899999999999999999887753
No 441
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.91 E-value=0.19 Score=36.80 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
.....++|.|.+|+|||+.+..+...++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999888877764
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.89 E-value=0.082 Score=33.20 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=19.5
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..--|++.|.+|+|||...+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 344688999999999999888763
No 443
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.85 E-value=0.13 Score=32.82 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|+|||...++++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999888763
No 444
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.83 E-value=0.14 Score=40.71 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
...+.++|+|.+|+|||+..|.+.-.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35678999999999999999997653
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.80 E-value=0.21 Score=36.90 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.0
Q ss_pred ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 38 QSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
..|+|.|.+|+|||+.+..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999888764
No 446
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.77 E-value=0.11 Score=33.13 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.3
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 34689999999999999887764
No 447
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.77 E-value=0.086 Score=33.09 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=4.2
Q ss_pred eEEecCCCCCccchhhhhhHHh
Q psy17856 39 SILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~~ 60 (79)
-|++.|.+|+|||...+.++.-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999887643
No 448
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.75 E-value=0.11 Score=33.84 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.3
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|+|.|.+|+|||...+.++.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999888764
No 449
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.70 E-value=0.051 Score=38.63 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=18.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.++|.|++|||||+..+.+.-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999987643
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.61 E-value=0.16 Score=35.49 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.9
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
..+|.|++|||||.....+.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 678999999999999887553
No 451
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.61 E-value=0.17 Score=34.23 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.1
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+-.|.|+|.+|||||+..+.+-+.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4578999999999999998876644
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.54 E-value=0.1 Score=32.55 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.4
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999888764
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.45 E-value=0.087 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.5
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|++.|.+|+|||...+.++.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999888764
No 454
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.40 E-value=0.1 Score=33.04 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.7
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
.|+|.|.+|+|||...+.++
T Consensus 35 ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSB
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988765
No 455
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.37 E-value=0.13 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.4
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|++.|.+|+|||...+.++.
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999888774
No 456
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.32 E-value=0.15 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=19.5
Q ss_pred cCCCceEEecCCCCCccchhhhhhHH
Q psy17856 34 DREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 34 ~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..+.=.|++.|.+|+|||...+.++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 34455789999999999999877763
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.30 E-value=0.16 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.3
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-.+|+|++|||||+....+.-
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999866553
No 458
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.30 E-value=0.13 Score=33.23 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=19.6
Q ss_pred hHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHH
Q psy17856 25 GGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 25 ~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..+-..|-.. ...--|+|.|.+|+|||...+.++.
T Consensus 15 ~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 15 VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp ------------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3333445432 2234589999999999999888764
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.28 E-value=0.12 Score=33.30 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.1
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|++.|.+|+|||...+.++.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999988763
No 460
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.27 E-value=0.15 Score=34.33 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=20.5
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...-.|+|.|.+|+|||+..+.++.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3456789999999999999988774
No 461
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.24 E-value=0.21 Score=36.19 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.5
Q ss_pred hHHHHHhHh-c--CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 25 GGPDQVYLS-D--REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 25 ~~Ay~~m~~-~--~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
-.....++. . .....++|.|++|+|||+.+..++..+..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355556665 3 35678899999999999999888876653
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.12 E-value=0.16 Score=32.83 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.4
Q ss_pred CceEEecCCCCCccchhhhhhHH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.|+|.|.+|+|||...+.++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 34689999999999999888764
No 463
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.11 E-value=0.24 Score=36.63 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.1
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
...|++.|.+|+|||+.+-.+..+|...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4578889999999999999999888754
No 464
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.07 E-value=0.19 Score=35.93 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHhHh-c--CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 26 GPDQVYLS-D--REDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 26 ~Ay~~m~~-~--~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....++. . .....++|.|++|+|||+.+..++..++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445554 2 3567789999999999999888876554
No 465
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.03 E-value=0.13 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=19.0
Q ss_pred CCCceEEecCCCCCccchhhhhhHH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
...--|++.|.+|+|||...+.+..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999876554
No 466
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.00 E-value=0.19 Score=35.55 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.....++.. .....++|.|++|+|||..+..+...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334455532 45677899999999999998876654
No 467
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.98 E-value=0.1 Score=35.38 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=18.4
Q ss_pred CceEEecCCCCCccchhhhhhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l 58 (79)
+-.|++.|++|+|||+..+.++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999998754
No 468
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=88.94 E-value=0.17 Score=40.11 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.+.++|+|.+|+|||+..|.+.-..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5789999999999999999987543
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.90 E-value=0.15 Score=32.46 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.5
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|++.|.+|+|||...+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999877764
No 470
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.75 E-value=0.18 Score=32.62 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.1
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|+|||...+.++.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999887764
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.74 E-value=0.15 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.6
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
--|+|.|.+|+|||...+.++.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999887763
No 472
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.70 E-value=0.23 Score=32.15 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.6
Q ss_pred CceEEecCCCCCccchhhhhhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l 58 (79)
.+.++++|..|+|||+.+-.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999974444
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.61 E-value=0.16 Score=32.48 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||...+.++.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 478999999999999888763
No 474
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.56 E-value=0.24 Score=37.86 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.8
Q ss_pred CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQYLAYV 64 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~ 64 (79)
.+..++|+|..|+|||+....++..|...
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999998888754
No 475
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.42 E-value=0.12 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.0
Q ss_pred ceEEecCCCCCccchhhhhhH
Q psy17856 38 QSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l 58 (79)
-.|++.|.+|+|||...+.++
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999998855
No 476
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.29 E-value=0.2 Score=33.30 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.2
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
-|+|.|.+|.|||....+++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 488899999999999988763
No 477
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=88.22 E-value=0.16 Score=41.16 Aligned_cols=20 Identities=30% Similarity=0.533 Sum_probs=18.0
Q ss_pred CCCceEEecCCCCCccchhh
Q psy17856 35 REDQSILCTGESGAGKTENT 54 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~ 54 (79)
.+|+-++|+|-||||||..+
T Consensus 22 p~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 22 PKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp ETTSEEEEEESTTSSSHHHH
T ss_pred CCCcEEEEECCCCCcHHHHH
Confidence 36889999999999999887
No 478
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.21 E-value=0.19 Score=37.97 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.8
Q ss_pred CceEEecCCCCCccchhhhhhHHhH
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
+..|+|.|++|.|||..++.+-..+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 4579999999999999999887755
No 479
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.16 E-value=0.21 Score=34.92 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.9
Q ss_pred HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
.....++.. .....++|.|++|+|||..+..+....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 334445532 356788999999999999988776543
No 480
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.15 E-value=0.13 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=24.2
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
|......++.+.. ++.-.|++.|.+|+|||...+.++
T Consensus 14 ~~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 14 LVPRGSLFSRIFG-KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp ---CCCGGGGTTT-TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cchHHHHHHHhcc-CCccEEEEECCCCCCHHHHHHHHH
Confidence 3444444444443 344568999999999999988775
No 481
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.07 E-value=0.24 Score=36.85 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...-.|+|.|.+|+|||..++.+...+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346689999999999999998877654
No 482
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.03 E-value=0.39 Score=36.06 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=35.6
Q ss_pred cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
....-++-..+..-.+.|.+.|.|.+|+|||+.++.+.+++.
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 555667777777778999999999999999999999888764
No 483
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.01 E-value=0.067 Score=34.32 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.9
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
-.|+|.|.+|+|||+..+.++.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 4688999999999999888764
No 484
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.95 E-value=0.2 Score=33.05 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.7
Q ss_pred eEEecCCCCCccchhhhhhH
Q psy17856 39 SILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l 58 (79)
-|+|.|.+|+|||...++++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999988776
No 485
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.88 E-value=0.32 Score=39.47 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCceEEecCCCCCccchhhhhh
Q psy17856 36 EDQSILCTGESGAGKTENTKKV 57 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~ 57 (79)
..+.++|+|.+|+|||+..|.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999987
No 486
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.87 E-value=0.33 Score=32.72 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCccchhhhhhHH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
..-.|++.|++|+|||+..+.++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999888774
No 487
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.87 E-value=0.17 Score=34.20 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.5
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|+|.|.+|+|||+..+.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999988864
No 488
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.87 E-value=0.2 Score=35.78 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=21.7
Q ss_pred HhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856 32 LSDREDQSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~ 59 (79)
+....+-.|+|.|++|+|||+..+.++.
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHHHHHTT
T ss_pred ecCCCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 3344556689999999999999988643
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.82 E-value=0.13 Score=42.16 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999887544
No 490
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.57 E-value=0.21 Score=35.27 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEecCCCCCccchhhhhhHH
Q psy17856 39 SILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 39 sIvisGeSGsGKTe~~k~~l~ 59 (79)
.|++.|.+|+|||+..+.++.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 678889999999999998886
No 491
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=87.55 E-value=0.2 Score=40.23 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.9
Q ss_pred CCceEEecCCCCCccchhhh
Q psy17856 36 EDQSILCTGESGAGKTENTK 55 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k 55 (79)
.++-++|+|-||||||.++-
T Consensus 35 ~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 35 RDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp SSSEEEEESSTTSSHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 68889999999999998873
No 492
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.53 E-value=0.25 Score=31.00 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=17.7
Q ss_pred ceEEecCCCCCccchhhhhhHH
Q psy17856 38 QSILCTGESGAGKTENTKKVIQ 59 (79)
Q Consensus 38 QsIvisGeSGsGKTe~~k~~l~ 59 (79)
.-.+|.|++|+|||.....+.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999776554
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.53 E-value=0.27 Score=36.66 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...-.|+|.|.+|+|||..++.+...+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346789999999999999998877554
No 494
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.42 E-value=0.34 Score=34.90 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=27.6
Q ss_pred HHHHHhHh---cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856 26 GPDQVYLS---DREDQSILCTGESGAGKTENTKKVIQYLA 62 (79)
Q Consensus 26 ~Ay~~m~~---~~~~QsIvisGeSGsGKTe~~k~~l~~l~ 62 (79)
.....++. -.....++|.|++|+|||..+..++..++
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445554 23567899999999999999988776655
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.30 E-value=0.11 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.154 Sum_probs=19.8
Q ss_pred CCCceEEecCCCCCccchhhhhhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l 58 (79)
++.-.|++.|.+|+|||...+.++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 445568999999999999987765
No 496
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.30 E-value=0.24 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856 26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY 60 (79)
Q Consensus 26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~ 60 (79)
.....++.. .....++|.|++|+|||..+..+...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444455533 35678899999999999998776653
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.27 E-value=0.14 Score=32.69 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.3
Q ss_pred CCceEEecCCCCCccchhhhhhH
Q psy17856 36 EDQSILCTGESGAGKTENTKKVI 58 (79)
Q Consensus 36 ~~QsIvisGeSGsGKTe~~k~~l 58 (79)
..=.|+|.|.+|+|||...+.++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34468899999999999988876
No 498
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.26 E-value=0.31 Score=35.54 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=26.8
Q ss_pred HHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 28 DQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 28 y~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...++.+ .....++|.|.+|+|||..+..+....+.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3344432 45678999999999999998887776653
No 499
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.13 E-value=0.29 Score=36.43 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856 35 REDQSILCTGESGAGKTENTKKVIQYL 61 (79)
Q Consensus 35 ~~~QsIvisGeSGsGKTe~~k~~l~~l 61 (79)
...-.|+|.|.+|+|||..++.+...+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 346789999999999999998877644
No 500
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.12 E-value=0.34 Score=36.69 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.9
Q ss_pred CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856 37 DQSILCTGESGAGKTENTKKVIQYLAY 63 (79)
Q Consensus 37 ~QsIvisGeSGsGKTe~~k~~l~~l~~ 63 (79)
...|+|.|..|+|||+.+..+..+|..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447889999999999999999988764
Done!