RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17856
(79 letters)
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 87.8 bits (218), Expect = 2e-22
Identities = 34/48 (70%), Positives = 36/48 (75%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S E
Sbjct: 141 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGE 188
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 86.2 bits (214), Expect = 8e-22
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
++DRE+QS L TGESGAGKTENTKKVI YLA VA + K A +
Sbjct: 164 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKK 211
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 85.0 bits (211), Expect = 2e-21
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
L+DRE+QSIL TGESGAGKT NTK+VIQY A +AA + +
Sbjct: 166 LTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGK 213
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 84.3 bits (209), Expect = 4e-21
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
L DR++QS+L TGESGAGKTENTKKVIQYLA VA S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 209
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 83.8 bits (208), Expect = 5e-21
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
D +QSI+ +GESGAGKT + K ++Y A V+ S + +
Sbjct: 151 ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 191
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 83.4 bits (207), Expect = 6e-21
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
L DR++QS+L TGESGAGKTENTKKVIQYLA VA S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 209
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 80.7 bits (200), Expect = 7e-20
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 28 DQVY---LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
+ Y +E+Q ++ +GESGAGKTE +KK++Q+L +V++++
Sbjct: 82 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGER 131
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 80.0 bits (198), Expect = 1e-19
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
+ QSI+ +GESGAGKTENTK V++YL +
Sbjct: 135 KVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGT 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 78.0 bits (192), Expect = 6e-19
Identities = 34/51 (66%), Positives = 37/51 (72%)
Query: 29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
+ L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S T+
Sbjct: 161 RSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQG 211
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 57.8 bits (140), Expect = 9e-12
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
D +QSI+ +GESGAGKT + K ++Y A V+ S + +
Sbjct: 151 ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 31.0 bits (70), Expect = 0.022
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 31 YLSDREDQSILCTGESGAGKTENTKKVIQYL 61
D E + +L G +G GK+ +++
Sbjct: 47 MPRDAEPRHLLVNGATGTGKSVLLRELAYTG 77
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.1 bits (67), Expect = 0.048
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
+ TG G GKT K + L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVL 25
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.0 bits (67), Expect = 0.050
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAY 63
I+ TGE G GKT KK+++ L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK 26
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.9 bits (64), Expect = 0.14
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70
+ + +I G +G GKT K V+ L K K
Sbjct: 40 YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFK 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.7 bits (63), Expect = 0.15
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK 68
L +++ T + K + V+ L +A K
Sbjct: 40 LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.23
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 21/85 (24%)
Query: 2 STR-------SAYQVYLIP-DEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTEN 53
STR S V L+P L ++ ++ + E A E
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQ----------LQEQFNKILPEPTEGFAADDEP 54
Query: 54 TKK---VIQYLAYVAASKPKGSSTA 75
T V ++L YV++
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQ 79
Score = 27.3 bits (60), Expect = 0.57
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 28 DQVYLSDREDQSILCT-GESGAGKTENTKKVIQ--YLAYVAASKP--KGSSTA 75
+ YL + ++ + TK++I+ A + A +P K S++A
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 27.5 bits (60), Expect = 0.40
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 38 QSILCTGESGAGKTENTKKVIQYL 61
G G GKT +K+ +
Sbjct: 45 PRATLLGRPGTGKTVTLRKLWELY 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.4 bits (60), Expect = 0.45
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
+ + S L G +G GKT +K + + V +
Sbjct: 40 VKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKD 81
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.3 bits (60), Expect = 0.45
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 17 IHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKT 51
+H+ + G + +Y + ++ G +GAGK+
Sbjct: 1 MHHHHHHSSGRENLYFQGESTRRLILVGRTGAGKS 35
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.3 bits (60), Expect = 0.45
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 17 IHYEVDLTGGPDQVYL------SDREDQSILCTGESGAGKTENTKKVI-QYLAY 63
I D GG V + DR + + + GAGK+ K ++ +
Sbjct: 11 IVLGKDRDGGL--VLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQ 62
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 27.0 bits (59), Expect = 0.51
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 34 DREDQSILCTGESGAGKTE 52
+ +L TGE+ GK+E
Sbjct: 13 VIDKMGVLITGEANIGKSE 31
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 26.9 bits (59), Expect = 0.69
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 4 RSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTE 52
+ IH L + +L TG SG GK+E
Sbjct: 125 ETYINEQFATVAQIHGV-----------LLEVFGVGVLLTGRSGIGKSE 162
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 26.5 bits (59), Expect = 0.69
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 7 YQVYLIPDEHIHYEVDLTGGPDQVYLSDRE 36
V E + +V+ G D+V L +RE
Sbjct: 150 KNVPTSRSEVVKVKVEEVDGEDRVELWERE 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.8 bits (59), Expect = 0.84
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 35 REDQSILCTGESGAGKTENTKKVIQYL 61
E + ++ G G+GKT ++
Sbjct: 1302 SEHRPLILCGPPGSGKTMTLTSTLRAF 1328
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 26.3 bits (57), Expect = 0.91
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 27 PDQVY---LSDREDQSILCTGESGAGKT 51
P+QV+ + + +++ GESG GK+
Sbjct: 5 PNQVHRKSVKKGFEFTLMVVGESGLGKS 32
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 26.3 bits (58), Expect = 1.0
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 7 YQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQS 39
V E +H + G D V +S
Sbjct: 166 KNVPTSRSESVHVRLREHDGRDGVVISRGSHHH 198
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.1 bits (57), Expect = 1.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 34 DREDQSILCTGESGAGKTE 52
D +L TG+SG GK+E
Sbjct: 31 DIYGLGVLITGDSGVGKSE 49
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 26.1 bits (57), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 29 QVYLSDREDQSILCTGESGAGKTE 52
L D +L TG+SG GK+E
Sbjct: 136 HGVLVDVYGVGVLITGDSGIGKSE 159
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 25.6 bits (57), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 11/33 (33%)
Query: 41 LCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
LCTG +G GK + K + Y KGS+
Sbjct: 42 LCTGMAGTGKI--SGKPLHY---------KGST 63
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 25.9 bits (58), Expect = 1.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 37 DQSILCTGESGAGK 50
+ +L TGESG GK
Sbjct: 160 ECPVLITGESGVGK 173
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB:
2wfj_A* 2gw2_A
Length = 179
Score = 25.6 bits (57), Expect = 1.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 11/33 (33%)
Query: 41 LCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
LCTGE G GK +T+K + Y K
Sbjct: 45 LCTGEKGTGK--STQKPLHY---------KSCL 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 25.7 bits (57), Expect = 1.6
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
++ ++ G +G GKT T +V Q++ + +
Sbjct: 74 SQNSVVIIRGATGCGKT--T-QVPQFILDDFIQNDRAAEC 110
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 25.5 bits (57), Expect = 1.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 37 DQSILCTGESGAGK 50
+L TGESG GK
Sbjct: 152 KAPVLITGESGTGK 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 1.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 32 LSDREDQSILCTGESGAGKT 51
L R +++L G G+GKT
Sbjct: 145 LELRPAKNVLIDGVLGSGKT 164
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 25.3 bits (56), Expect = 1.9
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 11/33 (33%)
Query: 41 LCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
LC+GE G GKT K L Y KGS+
Sbjct: 55 LCSGEKGLGKTTGKK-----LCY------KGST 76
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 25.5 bits (55), Expect = 2.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 40 ILCTGESGAGKT 51
++ GESG GK+
Sbjct: 11 LMVVGESGLGKS 22
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 25.3 bits (56), Expect = 2.2
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 7 YQVYLIPDEHIHYEVDLTGGPDQVYLSDRE 36
+ E + ++D D V + + E
Sbjct: 152 KNIPTSKSEKVMVQLDEVDQNDLVAIYENE 181
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 25.4 bits (56), Expect = 2.4
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 14 DEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKT 51
+ H+ + + R Q + G +G GK+
Sbjct: 80 EAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKS 117
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 24.8 bits (55), Expect = 2.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 37 DQSILCTGESGAGKT 51
D ++ G G G+
Sbjct: 24 DIAVWLYGAPGTGRM 38
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 24.8 bits (54), Expect = 3.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 28 DQVYLSDREDQSILCTGESGAGKT 51
D + + + G+ G GKT
Sbjct: 5 DLFKFNKGKTTFVFIGGKGGVGKT 28
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 24.7 bits (55), Expect = 3.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 37 DQSILCTGESGAGK 50
D ++L G+SG GK
Sbjct: 25 DATVLIHGDSGTGK 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator,
enhancer binding protein, PSPF; 1.7A {Escherichia coli}
PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 24.8 bits (55), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 DQSILCTGESGAGK 50
D+ +L GE G GK
Sbjct: 29 DKPVLIIGERGTGK 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 25.0 bits (55), Expect = 3.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 35 REDQSILCTGESGAGKT 51
++ + G +G GKT
Sbjct: 115 KDGMVVGIVGPNGTGKT 131
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 24.6 bits (53), Expect = 3.6
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 8 QVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSIL----CTGESGAGKTENTKKVIQYLAY 63
+ L ++ + + L D+V+ +D +++I TG EN + +
Sbjct: 199 KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
Query: 64 VAASKPKGSS 73
++P+G +
Sbjct: 259 HNLTQPRGVN 268
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 24.6 bits (54), Expect = 3.6
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 35 REDQSILCTGESGAGKT 51
+ + + G++G GKT
Sbjct: 23 KNNTILGVLGKNGVGKT 39
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 24.9 bits (54), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 32 LSDREDQSILCTGESGAGKT 51
L R + I G+ G GKT
Sbjct: 11 LDQRSLRWIFVGGKGGVGKT 30
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 24.5 bits (54), Expect = 3.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 41 LCTGESGAGKT 51
LCTGE G G++
Sbjct: 55 LCTGEKGMGQS 65
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 24.5 bits (54), Expect = 4.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAY 63
+ G+ GAGKT T+ ++Q + +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGH 59
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 24.4 bits (54), Expect = 4.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 41 LCTGESGAGKT 51
LCTGE+G GK+
Sbjct: 39 LCTGENGIGKS 49
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 24.4 bits (53), Expect = 4.4
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 15 EHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61
H H+ + G + +Y I +G + +GK+ +K+++ L
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 24.4 bits (53), Expect = 5.1
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 35 REDQSILCTGESGAGKTENTKKVIQYL 61
+ I+ G G+GKT ++
Sbjct: 1265 NSKRGIILCGPPGSGKTMIMNNALRNS 1291
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 24.3 bits (52), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 27 PDQVYLSDREDQ---SILCTGESGAGKT 51
PDQ+ +ILC GE+G GK+
Sbjct: 29 PDQLVNKSVSQGFCFNILCVGETGLGKS 56
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 23.9 bits (52), Expect = 6.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 41 LCTGESGAGKTENTK 55
LCTGE G G T
Sbjct: 51 LCTGEKGIGPTTGKP 65
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 24.1 bits (52), Expect = 6.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 28 DQVYLSDREDQSILCTGESGAGKT 51
++ + I+ G+ G GKT
Sbjct: 17 EKKLEKKDGTKYIMFGGKGGVGKT 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 23.7 bits (52), Expect = 6.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
I G + +GKT + + + L
Sbjct: 9 IGIAGGTASGKTTLAQALARTL 30
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 23.7 bits (52), Expect = 6.9
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 12 IPDEHIHYEV 21
+ IHYEV
Sbjct: 225 VDKARIHYEV 234
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 23.7 bits (52), Expect = 7.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 37 DQSILCTGESGAGK 50
+ TGE+G+
Sbjct: 27 TSPVFLTGEAGSPF 40
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 23.8 bits (51), Expect = 7.2
Identities = 4/9 (44%), Positives = 8/9 (88%)
Query: 43 TGESGAGKT 51
G++G+GK+
Sbjct: 29 IGQNGSGKS 37
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 23.8 bits (52), Expect = 8.8
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 44 GESGAGKT 51
G +G GKT
Sbjct: 319 GPNGIGKT 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 23.7 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 39 SILCTGESGAGKT 51
IL TG +G GKT
Sbjct: 283 IILATGATGTGKT 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.357
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,118,678
Number of extensions: 50607
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 62
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.4 bits)