RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17856
(79 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 72.5 bits (177), Expect = 2e-17
Identities = 34/43 (79%), Positives = 35/43 (81%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S T
Sbjct: 86 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDT 128
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 71.7 bits (175), Expect = 4e-17
Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
L+DRE+QSIL TGESGAGKT NTK+VIQY A +AAS K
Sbjct: 118 LTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKE 159
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 71.3 bits (174), Expect = 6e-17
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
++DRE+QS L TGESGAGKTENTKKVI YLA VA + K A +
Sbjct: 116 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKK 163
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 68.6 bits (167), Expect = 4e-16
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
+E+Q ++ +GESGAGKTE +KK++Q+L +V++++
Sbjct: 81 RQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGER 123
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 68.6 bits (167), Expect = 4e-16
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
L DR++QS+L TGESGAGKTENTKKVIQYLA VA S
Sbjct: 120 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 162
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 66.7 bits (162), Expect = 2e-15
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
D +QSI+ +GESGAGKT + K ++Y A V+ S + +
Sbjct: 89 ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 129
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 30.4 bits (67), Expect = 0.013
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 38 QSILCTGESGAGKTENTKKVIQYL 61
+ + TG G GKT K + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.9 bits (66), Expect = 0.021
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 34 DREDQSILCTGESGAGKTENTKKVIQYL 61
D E + +L G +G GK+ +++
Sbjct: 47 DAEPRHLLVNGATGTGKSVLLRELAYTG 74
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 0.28
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 34 DREDQSILCTGESGAGKTE 52
D +L TG+SG GK+E
Sbjct: 12 DVYGVGVLITGDSGIGKSE 30
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.4 bits (58), Expect = 0.30
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 34 DREDQSILCTGESGAGKTE 52
+ +L TG SG GK+E
Sbjct: 12 EVFGVGVLLTGRSGIGKSE 30
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 0.34
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
++ TG G G T +++ + L
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNL 25
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.4 bits (58), Expect = 0.37
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 35 REDQSILCTGESGAGKT 51
+ +L TGESG GK
Sbjct: 21 CAECPVLITGESGVGKE 37
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.1 bits (56), Expect = 0.38
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 40 ILCTGESGAGKTENTKKVIQYLA 62
I+ TGE G GKT KK+++ L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.4 bits (57), Expect = 0.40
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 35 REDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70
R+ + + GAGKT+ + + + A +
Sbjct: 7 RKKRLTIMDLHPGAGKTK---RYLPAIVREAIKRGL 39
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.0 bits (57), Expect = 0.44
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 34 DREDQSILCTGESGAGKTE 52
D +L TG+SG GK+E
Sbjct: 11 DIYGLGVLITGDSGVGKSE 29
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 0.60
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY 63
L L G GK+ K I L
Sbjct: 23 KLKGLRAPITLVLGLRRTGKSSIIKIGINELNL 55
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.4 bits (54), Expect = 0.69
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
I TG +GK + + L
Sbjct: 9 IFLTGYMNSGKDAIARALQVTL 30
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.4 bits (55), Expect = 0.72
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 11 LIPDEHIHYEVDLTGGPDQVYLSDR 35
E + +V+ G D+V L +R
Sbjct: 154 TSRSEVVKVKVEEVDGEDRVELWER 178
>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.4 bits (55), Expect = 0.77
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 7 YQVYLIPDEHIHYEVDLTGGPDQVYLS 33
V E +H + G D V +S
Sbjct: 155 KNVPTSRSESVHVRLREHDGRDGVVIS 181
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.0 bits (53), Expect = 0.95
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 35 REDQSILCTGESGAGKTE 52
++ + + GAGKT
Sbjct: 5 KKGMTTVLDFHPGAGKTR 22
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.1 bits (53), Expect = 0.96
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 36 EDQSILCTGESGAGKTENTKKVIQYLAY 63
E ++I G GAGK+ +++ Q L
Sbjct: 1 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 28
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.0 bits (53), Expect = 1.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAY 63
+ TG +G GK+ K++ L
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDN 28
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.9 bits (53), Expect = 1.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 43 TGESGAGKTENTKKVIQYL 61
SG GKT KK+I L
Sbjct: 8 AAWSGTGKTTLLKKLIPAL 26
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.9 bits (53), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
I+ G GKT +KK+ +YL
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL 26
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 24.8 bits (53), Expect = 1.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
I TG S +GK+ ++ L
Sbjct: 27 IWLTGLSASGKSTLAVELEHQL 48
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 24.6 bits (53), Expect = 1.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 32 LSDREDQSILCTGESGAGKT 51
L R + + GE G GKT
Sbjct: 38 LLRRTKNNPVLIGEPGVGKT 57
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 24.3 bits (51), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
+ TG SGAGKT + + +YL
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYL 43
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 24.4 bits (52), Expect = 1.8
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 43 TGESGAGKTENTKKVIQYL 61
G +GKT +K +
Sbjct: 7 VGYKHSGKTTLMEKWVAAA 25
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 24.1 bits (51), Expect = 1.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
IL G AGKT
Sbjct: 15 ILMLGLDAAGKT 26
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 24.4 bits (51), Expect = 2.2
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 33 SDREDQSILCTGESGAGKTENTKKVIQYL 61
R+ +L G +G GK +++ +
Sbjct: 29 QPRDLPHLLLYGPNGTGKKTRCMALLESI 57
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 24.2 bits (51), Expect = 2.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 40 ILCTGESGAGKTENTKKVIQYLA 62
I +G + +GK+ K++Q L
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLG 27
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 24.0 bits (50), Expect = 2.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 39 SILCTGESGAGKTENTKKVIQYLA 62
G G GKT +K+ +
Sbjct: 45 RATLLGRPGTGKTVTLRKLWELYK 68
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 23.8 bits (50), Expect = 2.4
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAYVAAS 67
++ +G S GK+ + + + + + S
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFS 32
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 23.9 bits (51), Expect = 2.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 40 ILCTGESGAGKTENTKKVIQYLA 62
+L G +G GKT K+ +Y
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQ 31
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 23.8 bits (50), Expect = 2.7
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
+L G +GK+
Sbjct: 5 LLLLGAGESGKS 16
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 23.8 bits (50), Expect = 2.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 40 ILCTGESGAGKT 51
IL G GAGKT
Sbjct: 20 ILILGLDGAGKT 31
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 23.8 bits (50), Expect = 3.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 40 ILCTGESGAGKT 51
I+ G S AGK+
Sbjct: 6 IILNGGSSAGKS 17
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 23.7 bits (50), Expect = 3.1
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
IL G +GK+
Sbjct: 5 ILLLGAGESGKS 16
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 23.5 bits (49), Expect = 3.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
IL G AGKT
Sbjct: 3 ILMVGLDAAGKT 14
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 23.4 bits (50), Expect = 3.4
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 44 GESGAGKT 51
G +GAGK+
Sbjct: 31 GPTGAGKS 38
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 23.4 bits (49), Expect = 3.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
IL G AGKT
Sbjct: 19 ILLLGLDNAGKT 30
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 23.4 bits (49), Expect = 3.9
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
+L G +GK+
Sbjct: 5 LLLLGTGESGKS 16
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 23.4 bits (49), Expect = 4.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 40 ILCTGESGAGKT 51
+L +G G+GK+
Sbjct: 7 LLLSGHPGSGKS 18
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 23.6 bits (50), Expect = 4.0
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 16 HIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL 61
+ P + + ++IL G +G GKTE +++ +
Sbjct: 31 RNRWRRMQLQEPLRHEV---TPKNILMIGPTGVGKTEIARRLAKLA 73
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 23.5 bits (49), Expect = 4.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 40 ILCTGESGAGKT 51
+L G AGKT
Sbjct: 5 LLMLGLDNAGKT 16
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 23.6 bits (49), Expect = 4.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
G G GKT K ++ +
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRV 70
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 23.1 bits (48), Expect = 4.4
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAY 63
+ G +GK+ K+
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNT 33
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 23.4 bits (49), Expect = 4.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
L G+ G+GKT + +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEET 56
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 23.1 bits (48), Expect = 4.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAYV 64
I G SGAGK K + + L +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWH 30
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 23.1 bits (48), Expect = 4.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 39 SILCTGESGAGKT 51
++L G +GKT
Sbjct: 2 AVLFVGLCDSGKT 14
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 23.1 bits (49), Expect = 4.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 28 DQVYLSDREDQSILCTGESGAGKT 51
D V ++ + G SGAGKT
Sbjct: 22 DNVNINIENGERFGILGPSGAGKT 45
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 23.2 bits (49), Expect = 4.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 29 QVYLSDREDQSILCTGESGAGKT 51
QVY R +L G +GK+
Sbjct: 1 QVY---RATHRLLLLGAGESGKS 20
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 23.1 bits (49), Expect = 5.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 40 ILCTGESGAGKTENTKKVIQYLA 62
G G+GKT K+ Y
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYK 35
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 23.0 bits (49), Expect = 5.3
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 44 GESGAGKT 51
G +GAGK+
Sbjct: 32 GPNGAGKS 39
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 23.1 bits (49), Expect = 5.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 44 GESGAGKT 51
G +GAGKT
Sbjct: 33 GPTGAGKT 40
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 22.9 bits (49), Expect = 5.9
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 44 GESGAGKT 51
G SG+GK+
Sbjct: 35 GSSGSGKS 42
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 23.0 bits (49), Expect = 6.1
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 12 IPDEHIHYE-VDLTGGP--DQVYLSDREDQSILCTGESGAGKT 51
+ ++ + + L G P + L+ + + + TG +G+GKT
Sbjct: 34 SDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKT 76
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 22.7 bits (47), Expect = 6.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 40 ILCTGESGAGKTENTKKVIQYLAY 63
I G + +GK+ K + + +
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFGF 29
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 22.6 bits (48), Expect = 6.4
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 44 GESGAGKT 51
G SG GKT
Sbjct: 36 GPSGCGKT 43
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 22.5 bits (47), Expect = 6.6
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 35 REDQSILCTGESGAGKTE 52
+ Q +G+GK+
Sbjct: 6 QSFQVAHLHAPTGSGKST 23
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 22.8 bits (48), Expect = 6.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYL 61
+ D+ I+ G G GK K+ +
Sbjct: 7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFY 36
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 22.7 bits (48), Expect = 7.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 32 LSDREDQSILCTGESGAGKT 51
L R + L GESG GKT
Sbjct: 34 LCRRRKNNPLLVGESGVGKT 53
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 22.6 bits (48), Expect = 7.1
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 40 ILCTGESGAGKTENTKKVIQYL 61
I TG SGAG + Q
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIF 28
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 22.5 bits (47), Expect = 7.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 40 ILCTGESGAGKTENTKKVIQ 59
+ + SGAGK+ + +++
Sbjct: 5 YIVSAPSGAGKSSLIQALLK 24
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 22.4 bits (48), Expect = 7.7
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 44 GESGAGKT 51
G SG GKT
Sbjct: 39 GPSGCGKT 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.127 0.357
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,963
Number of extensions: 9159
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 66
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)