BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17858
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
Query: 7 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 64
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 908 ILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 967
Query: 65 MLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKL 124
+LKYTPQH+ C A FWGPIT GTGFLA+Q V+ P FR+ ATG +LD +++ ++ KKL
Sbjct: 968 LLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKL 1027
Query: 125 KLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 155
KLTG P KI+K T+FIK MFNS LEVAKFEG
Sbjct: 1028 KLTGFPYKIFKNTSFIKGMFNSALEVAKFEG 1058
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 175 bits (443), Expect = 1e-43, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 103/139 (74%), Gaps = 3/139 (2%)
Query: 20 QARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHF 79
Q R+K+HRW+ KILK+ +P+I S+GWRRFQ++P+YS + R RMLKYTP+H+ C F
Sbjct: 763 QVRIKRHRWHKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTF 822
Query: 80 WGPITRSGTGFLAVQDVAK---REPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKK 136
+GP +GF AVQ VA + FR+ ATG++L+ +Q+ ++ KKLKLTGVP KI+K
Sbjct: 823 YGPFVAPNSGFCAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKLKLTGVPYKIFKN 882
Query: 137 TAFIKDMFNSTLEVAKFEG 155
TAFIK MF+S LEVAKFEG
Sbjct: 883 TAFIKKMFSSPLEVAKFEG 901
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 100/138 (72%), Gaps = 2/138 (1%)
Query: 20 QARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHF 79
+AR+++HRW+ KILK+ +P+++S+GWRRFQTLPIY+ + R RMLKYTP+H C A F
Sbjct: 826 KARLRRHRWHKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLKYTPEHTYCNAAF 885
Query: 80 WGPITRSGTGFLAVQDVAKREP--GFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKT 137
+GP+ T F VQ VA + GFR+ ATG + + + E+ KKLKL G P KI+K T
Sbjct: 886 YGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVKKLKLVGFPYKIFKNT 945
Query: 138 AFIKDMFNSTLEVAKFEG 155
AFIKDMF+S +EVA+FEG
Sbjct: 946 AFIKDMFSSAMEVARFEG 963
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 7 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 64
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 84
Query: 65 MLKYTPQHVACMAHFWG 81
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHMHCGAAFWA 101
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 7 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 64
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+ +Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGHVQMRLKKHRWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQR 84
Query: 65 MLKYTPQHVACMAHFWG 81
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHIHCGAAFWA 101
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 7 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 64
++G GN N + +KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGYVEMHLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 84
Query: 65 MLKYTPQHVACMAHFWG 81
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHMHCGAAFWA 101
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 33 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 92
LKS +I+ G+RRF PIYS+ + +++ +Y + A F+ PI LA
Sbjct: 614 LKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQFPPAPVLA 673
Query: 93 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 152
+ + ++A G +L N V K++ L+G PM+I +K+A I+ MF +V
Sbjct: 674 FK--VNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFFYKEDVEY 731
Query: 153 FEGLR 157
F+ ++
Sbjct: 732 FKPVK 736
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 23 VKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGP 82
V++H + +K+ +I G+RRF+ P++S+ +++ ++ + + + P
Sbjct: 609 VRRHPGNNEPIKAKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAP 668
Query: 83 ITRSGTGFLAVQDVAKREPGFR-VIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIK 141
IT L + +R G + ++ATG++L+ N V K++ L+G P KI K+TA ++
Sbjct: 669 ITFPPASVLVFK---QRYNGMQDLVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVR 725
Query: 142 DMF 144
MF
Sbjct: 726 YMF 728
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 23 VKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNM-RYRMLKYTPQHVACMAHFWG 81
V+KH+ Y + ++S V GWR+F T PIYS N + + K+ MA +G
Sbjct: 636 VEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPARNTMATIYG 695
Query: 82 PITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMK-IYKKTAFI 140
PIT L E ++ATG + N + K++ LTGV K I KK +
Sbjct: 696 PITYPPAPLLIFNGKDCNE----LVATGYLSSVNPDRIICKRIILTGVIAKSISKKFVTV 751
Query: 141 KDMF 144
KDMF
Sbjct: 752 KDMF 755
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 20 QARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQE----DNMRYRMLKYTPQHVAC 75
Q +H Y + ++S +++ +G RRF P+YS N + +Y P A
Sbjct: 586 QFTAMQHSEYEEPIESKEELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLPPKQAV 645
Query: 76 MAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYK 135
+A PI + + + + R+ ATG+ ++ + + + K+ LTG P K++K
Sbjct: 646 IASVISPIVFGNVPIIMFKKSS--DNSLRLAATGSYVNCDTNSVIAKRAVLTGHPFKVHK 703
Query: 136 KTAFIKDMFNSTLEVAKFEGLR 157
K I+ MF + +V F+ ++
Sbjct: 704 KLVTIRYMFFNPEDVIWFKPIQ 725
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 40 IMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAV-QDVAK 98
I VG+R+F+ ++S ++++ ++ P +A + PIT + L QD
Sbjct: 590 IFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDKG 649
Query: 99 REPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMF 144
R+ ++ATG+ILD+N V K+ L G P KI ++ ++ MF
Sbjct: 650 RQ---ELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMF 692
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 33 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 92
+K+ +I G+RRF+ P++S+ ++++ ++ +A +A + PIT L
Sbjct: 608 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 667
Query: 93 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 152
+ K +IATG ++ + V K++ L+G P KI+ K A ++ MF + +V
Sbjct: 668 FK--QKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLW 725
Query: 153 F 153
F
Sbjct: 726 F 726
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 33 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 92
+K+ +I G+RRF+ P++S+ ++++ ++ +A +A + PIT L
Sbjct: 609 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 668
Query: 93 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 152
+ K +IATG ++ + V K++ L+G P+K++ K A ++ MF + +V
Sbjct: 669 FK--QKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLW 726
Query: 153 F 153
F
Sbjct: 727 F 727
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 40 IMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAV-QDVAK 98
I VG+R+F+ + S ++++ ++ P +A + PIT + L QD
Sbjct: 593 IFYVGFRQFEAHAVLSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDKG 652
Query: 99 REPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMF 144
R+ ++ATG++LD N V K+ L+G P KI ++ ++ MF
Sbjct: 653 RQ---ELVATGSVLDTNPDRIVLKRTVLSGHPYKINRRAVVVRYMF 695
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 33 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 92
+K+ +I G+RRF+ P++S+ +++ ++ A + + PIT L
Sbjct: 607 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLL 666
Query: 93 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 152
+ +R +IATG + + V K++ L+G P KI+ K A ++ MF + +V
Sbjct: 667 FK--QRRNGMHSLIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMW 724
Query: 153 F 153
F
Sbjct: 725 F 725
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 26 HRW--YGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPI 83
RW Y K + S P+++ G RR+ P++S+ + +P +V F P
Sbjct: 599 QRWEQYDKPVPSQEPIVVQYGVRRYTIQPLFSQGSN---------SPNNVHKYERFLHPD 649
Query: 84 TRSGTGFLAVQDVAKREPGF-----------RVIATGTILDANQTAEVTKKLKLTGVPMK 132
T S +A D + F +I GT L+A+ + + K+ LTG P +
Sbjct: 650 TVSVATCIAPVDFTQSPAIFFKPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFR 709
Query: 133 IYKKTAFIKDMFNSTLEVAKFEGL 156
+K ++ MF +V F+ +
Sbjct: 710 FHKTVVTVRYMFFRPEDVEWFKSI 733
>sp|Q3V0T4|ITAD_MOUSE Integrin alpha-D OS=Mus musculus GN=Itgad PE=2 SV=1
Length = 1168
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 56 KQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPG 102
++E RYR+ +P +A +FW PI +G +AV DV R P
Sbjct: 952 QKEAEHRYRVNNLSPLTLAISVNFWVPILLNG---VAVWDVTLRSPA 995
>sp|A7N6S2|CQSS_VIBHB CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=cqsS PE=1
SV=1
Length = 681
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 31 KILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGF 90
K+ + P + VGW F PIY + M + + P + C F+G I R+ T F
Sbjct: 6 KVYQYAEPNLSLVGWMGFIGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPF 65
>sp|A3DNG5|DCD_STAMF Probable deoxycytidine triphosphate deaminase OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=dcd PE=3
SV=1
Length = 176
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 71 QHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVP 130
+HV W + GF+ ++ R + + TI+DA +T +L +P
Sbjct: 79 EHVLATTLEWVEMPNDLIGFVNLRSTFAR---YSLYIPPTIIDAGFKGNITIELIGGSIP 135
Query: 131 MKIYKKTAFIKDMFNST 147
+K+Y K F+ +F T
Sbjct: 136 VKVYPKQRFLHVIFART 152
>sp|Q6NZK8|PTPC1_MOUSE Protein tyrosine phosphatase domain-containing protein 1 OS=Mus
musculus GN=Ptpdc1 PE=2 SV=1
Length = 747
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 64 RMLKYTPQ--HVACMAHFWGPITRSGTGFLAVQDVAKREPG-FRVIATGTILDANQTAEV 120
R+LKY P+ H+ C + D+A+ P + + G +L A V
Sbjct: 280 RLLKYVPKIIHLVCKL---------------LLDLAENRPVVMKSMLEGPVLSAEIEKTV 324
Query: 121 TKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFE 154
++ + L + ++ ++ + + D FN T EVA+FE
Sbjct: 325 SEMVTLQ-LDQELLRQNSDVPDPFNPTAEVAEFE 357
>sp|O74847|MPC2_SCHPO Probable mitochondrial pyruvate carrier 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1235.11 PE=3 SV=3
Length = 141
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 75 CMAHFWGPITRSGTGFLAVQDVAKREP 101
C HFWGP++ G A+ D+ K++P
Sbjct: 33 CSTHFWGPLSNFGIPIAAILDL-KKDP 58
>sp|C3LQC0|DEOB_VIBCM Phosphopentomutase OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=deoB PE=3 SV=1
Length = 406
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 104 RVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 155
RV++ G I D +T K+K TG+P D+F +TLE K G
Sbjct: 252 RVVSIGKIADIYAYCGITDKVKATGIP-----------DLFEATLEQIKQAG 292
>sp|A5F5U0|DEOB_VIBC3 Phosphopentomutase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=deoB PE=3 SV=1
Length = 406
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 104 RVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 155
RV++ G I D +T K+K TG+P D+F +TLE K G
Sbjct: 252 RVVSIGKIADIYAYCGITDKVKATGIP-----------DLFEATLEQIKQAG 292
>sp|Q9KPL9|DEOB_VIBCH Phosphopentomutase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=deoB PE=3 SV=1
Length = 406
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 104 RVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 155
RV++ G I D +T K+K TG+P D+F +TLE K G
Sbjct: 252 RVVSIGKIADIYAYCGITDKVKATGIP-----------DLFEATLEQIKQAG 292
>sp|A3QGT1|DEOB_SHELP Phosphopentomutase OS=Shewanella loihica (strain ATCC BAA-1088 /
PV-4) GN=deoB PE=3 SV=1
Length = 405
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 99 REPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGLR 157
+E G V++ G I D +TKK+K TG ++ +F++TLE K G R
Sbjct: 245 KEAGGEVVSVGKIADIYAHCGITKKVKATG-----------LEALFDATLEQVKQAGDR 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,171,578
Number of Sequences: 539616
Number of extensions: 2083646
Number of successful extensions: 6287
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6254
Number of HSP's gapped (non-prelim): 32
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)