Query psy17858
Match_columns 157
No_of_seqs 105 out of 408
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:51:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 98.7 1E-08 3.4E-13 90.5 3.7 125 29-157 303-437 (482)
2 3sjy_A Translation initiation 24.7 2.9E+02 0.0099 22.6 10.0 65 30-112 336-402 (403)
3 1sqw_A Saccharomyces cerevisia 22.4 1.1E+02 0.0036 23.8 4.4 52 71-128 109-170 (188)
4 3mx7_A FAS apoptotic inhibitor 14.6 64 0.0022 22.3 1.3 30 111-141 31-66 (90)
5 1xdx_A Tctex1 light chain prot 14.4 98 0.0034 21.4 2.3 18 64-81 94-111 (114)
6 1ygt_A Cytoplasmic dynein ligh 14.2 92 0.0031 21.5 2.1 19 63-81 90-108 (111)
7 3izq_1 HBS1P, elongation facto 12.2 6.7E+02 0.023 22.1 7.7 81 29-115 515-610 (611)
8 2o8m_C Protease; NS3, NS4A, vi 11.5 89 0.003 16.8 1.0 17 117-133 4-20 (26)
9 1jny_A EF-1-alpha, elongation 10.9 6.7E+02 0.023 20.6 9.6 83 30-118 336-431 (435)
10 1zyo_A Serine protease; beta-b 10.2 5.2E+02 0.018 19.5 5.5 32 78-116 7-38 (191)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.66 E-value=1e-08 Score=90.49 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=90.5
Q ss_pred cccccccCCeEEEEEeeeeEEeeeeeee-c--CCCceeEEeeccCCCce--EEEEEEeecccCCceEEEEEeccCCCCCe
Q psy17858 29 YGKILKSGNPVIMSVGWRRFQTLPIYSK-Q--EDNMRYRMLKYTPQHVA--CMAHFWGPITRSGTGFLAVQDVAKREPGF 103 (157)
Q Consensus 29 ~~~~lkSkd~li~~~G~RRf~~~Pifs~-~--~~~~r~K~~k~~~~~~~--~~asfygPi~~~~~~vl~f~~~~~~~~~~ 103 (157)
++.||++..++.+++|..+-.+....-. + |.+..++..+++.++.. |...+-.|+...+-.-++++...+.....
T Consensus 303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~ 382 (482)
T 1wb1_A 303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL 382 (482)
T ss_dssp CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence 4579999999999999999888765543 2 22333445567777764 44566699888765555566521112235
Q ss_pred EEEEEEEEecCCCCcEEEEEEEEEeeeEE-----EeeceEEEecCCCChhhhcccccCC
Q psy17858 104 RVIATGTILDANQTAEVTKKLKLTGVPMK-----IYKKTAFIKDMFNSTLEVAKFEGLR 157 (157)
Q Consensus 104 ~l~atG~v~~~d~~riI~Kri~LtG~P~K-----I~K~ta~Vr~MF~n~~dV~~F~ga~ 157 (157)
+.+|.|.++++++ +|+++|...+.| +++++|++|+||+++.|+.||+|.+
T Consensus 383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~ 437 (482)
T 1wb1_A 383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEE 437 (482)
T ss_dssp CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCC
T ss_pred eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcE
Confidence 8999999999876 455555444444 7889999999999999999999975
No 2
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=24.72 E-value=2.9e+02 Score=22.62 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=45.4
Q ss_pred ccccccCCeEEEEEeeeeEEeeeeeeecCCCceeEEeeccCCCceEEEEEEeeccc-CCc-eEEEEEeccCCCCCeEEEE
Q psy17858 30 GKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITR-SGT-GFLAVQDVAKREPGFRVIA 107 (157)
Q Consensus 30 ~~~lkSkd~li~~~G~RRf~~~Pifs~~~~~~r~K~~k~~~~~~~~~asfygPi~~-~~~-~vl~f~~~~~~~~~~~l~a 107 (157)
+.||+...++.+++|-.+-.+.-..-..+ .+-..+--|+.. .+. .+++.+.. ...+|++|
T Consensus 336 ~~~l~~~~~~~~~~gt~~~~~~v~~~~~~---------------~~~~~l~~p~~~~~g~~r~~i~r~~---~~~~r~~g 397 (403)
T 3sjy_A 336 VDPIRAKETLMLSVGSSTTLGIVTSVKKD---------------EIEVELRRPVAVWSNNIRTVISRQI---AGRWRMIG 397 (403)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEECSS---------------EEEEEEEEEEECCSSSCEEEEEEEE---TTEEEEEE
T ss_pred CCCCCCCCEEEEEECccEEEEEEEEecCc---------------eEEEEeCCcEeeccCCEEEEEEEEe---CCcEEEEE
Confidence 68999999999999998877765533211 123344566444 356 78887776 34789999
Q ss_pred EEEEe
Q psy17858 108 TGTIL 112 (157)
Q Consensus 108 tG~v~ 112 (157)
+|.+.
T Consensus 398 ~g~i~ 402 (403)
T 3sjy_A 398 WGLVE 402 (403)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 3
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=22.42 E-value=1.1e+02 Score=23.79 Aligned_cols=52 Identities=12% Similarity=-0.044 Sum_probs=37.3
Q ss_pred CCceEEEEEE---eecccCCceEEEEEeccCCCCCeEEEEEEEEe-------cCCCCcEEEEEEEEEe
Q psy17858 71 QHVACMAHFW---GPITRSGTGFLAVQDVAKREPGFRVIATGTIL-------DANQTAEVTKKLKLTG 128 (157)
Q Consensus 71 ~~~~~~asfy---gPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~-------~~d~~riI~Kri~LtG 128 (157)
-|.+..++.. .|-+.++.+|+.+.... .++|.|... +.||+.+++++..=.|
T Consensus 109 yG~nVfk~~V~~i~e~i~~~~~VvV~n~~d------~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~G 170 (188)
T 1sqw_A 109 YGNHVLKSGLGRITENTSQYQGVVVYSMAD------IPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 170 (188)
T ss_dssp TTCCEEGGGEEEECTTCCTTCEEEEEETTC------CEEEEEEESSCHHHHHHSCTTSEEEEEEEEGG
T ss_pred eccchhHHhhhhcCCCCCCCCEEEEEeCCC------CEEEEEEeecCHHHHHhcCCCcEEEEEcccce
Confidence 3444444433 34467899999997642 689999884 8899999999876544
No 4
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=14.55 E-value=64 Score=22.27 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred EecCCCCcEEEEE---EEEEe-eeEEEee--ceEEEe
Q psy17858 111 ILDANQTAEVTKK---LKLTG-VPMKIYK--KTAFIK 141 (157)
Q Consensus 111 v~~~d~~riI~Kr---i~LtG-~P~KI~K--~ta~Vr 141 (157)
++.+|.. .|++| .+|+| ++|+|-+ .+|.|+
T Consensus 31 vi~VDGk-ev~r~~wmfklvGke~F~ig~~~~k~~I~ 66 (90)
T 3mx7_A 31 VVYVDGK-EEIRKEWMFKLVGKETFYVGAAKTKATIN 66 (90)
T ss_dssp EEEETTE-EEEEECCCSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEECCE-EEEecCCeEEEEeeEeEEECCcceEEEEE
Confidence 3566666 56666 56777 8999966 555553
No 5
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=14.35 E-value=98 Score=21.39 Aligned_cols=18 Identities=17% Similarity=0.683 Sum_probs=13.5
Q ss_pred EEeeccCCCceEEEEEEe
Q psy17858 64 RMLKYTPQHVACMAHFWG 81 (157)
Q Consensus 64 K~~k~~~~~~~~~asfyg 81 (157)
=-.+|--++++|++++||
T Consensus 94 ~s~~~~n~sl~~v~tVfg 111 (114)
T 1xdx_A 94 RTVRWENKSMYCICTVFG 111 (114)
T ss_dssp EEEEEESSSCEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEEE
Confidence 334455578999999998
No 6
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=14.23 E-value=92 Score=21.45 Aligned_cols=19 Identities=11% Similarity=0.487 Sum_probs=14.1
Q ss_pred eEEeeccCCCceEEEEEEe
Q psy17858 63 YRMLKYTPQHVACMAHFWG 81 (157)
Q Consensus 63 ~K~~k~~~~~~~~~asfyg 81 (157)
.=-.+|--++++|++++||
T Consensus 90 ~~s~~~~n~sl~~v~tVfg 108 (111)
T 1ygt_A 90 SCTVRWENKTMYCIVSVFG 108 (111)
T ss_dssp EEEEEEECSSEEEEEEEEE
T ss_pred eEEEEEECCCEEEEEEEEE
Confidence 3444555578999999998
No 7
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=12.22 E-value=6.7e+02 Score=22.07 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=51.6
Q ss_pred cccccccCCeEEEEEeeeeEEeeee--eeecCCC-cee-EEeeccCCCceEEEEEEe-----ecccCC------ceEEEE
Q psy17858 29 YGKILKSGNPVIMSVGWRRFQTLPI--YSKQEDN-MRY-RMLKYTPQHVACMAHFWG-----PITRSG------TGFLAV 93 (157)
Q Consensus 29 ~~~~lkSkd~li~~~G~RRf~~~Pi--fs~~~~~-~r~-K~~k~~~~~~~~~asfyg-----Pi~~~~------~~vl~f 93 (157)
.+.||+...+++++||-++-.+.-. -+.-+.+ +.. +--+++..+..+++.+-- |+.+-+ .+-.++
T Consensus 515 ~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~l 594 (611)
T 3izq_1 515 MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVL 594 (611)
T ss_dssp CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEE
T ss_pred CCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEE
Confidence 3689999999999999998776433 2222322 221 112478888888777754 765433 334444
Q ss_pred EeccCCCCCeEEEEEEEEecCC
Q psy17858 94 QDVAKREPGFRVIATGTILDAN 115 (157)
Q Consensus 94 ~~~~~~~~~~~l~atG~v~~~d 115 (157)
+.. -+-+|.|.|.+++
T Consensus 595 r~~------~~Tva~G~i~~v~ 610 (611)
T 3izq_1 595 RKD------GRTIAAGKISEIT 610 (611)
T ss_dssp ESS------SSEEEEEEEEEEC
T ss_pred EeC------CCEEEEEEEEEec
Confidence 432 1679999998775
No 8
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=11.46 E-value=89 Score=16.83 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.4
Q ss_pred CcEEEEEEEEEeeeEEE
Q psy17858 117 TAEVTKKLKLTGVPMKI 133 (157)
Q Consensus 117 ~riI~Kri~LtG~P~KI 133 (157)
+-.|+-||+|.|.|.-+
T Consensus 4 ~VvIvGri~l~gkp~v~ 20 (26)
T 2o8m_C 4 CVVIVGRIVLSGKPAII 20 (26)
T ss_dssp CBEEEEEEECSCCCEEC
T ss_pred eEEEEEEEEECCceEEc
Confidence 45688999999988654
No 9
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=10.87 E-value=6.7e+02 Score=20.64 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=51.2
Q ss_pred ccccccCCeEEEEEeeeeEEeee--eeeecCCC-cee--EEeeccCCCceEEEEE--EeecccC------CceEEEEEec
Q psy17858 30 GKILKSGNPVIMSVGWRRFQTLP--IYSKQEDN-MRY--RMLKYTPQHVACMAHF--WGPITRS------GTGFLAVQDV 96 (157)
Q Consensus 30 ~~~lkSkd~li~~~G~RRf~~~P--ifs~~~~~-~r~--K~~k~~~~~~~~~asf--ygPi~~~------~~~vl~f~~~ 96 (157)
+.||+......+++|-.+-.+.- +.+.-|.+ ++. +--+++.++..+.+.+ -.|+..- +.+=++++..
T Consensus 336 ~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~ 415 (435)
T 1jny_A 336 PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM 415 (435)
T ss_dssp SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET
T ss_pred CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC
Confidence 57999999999999998877643 44433332 222 1135788888766554 3554432 2234555543
Q ss_pred cCCCCCeEEEEEEEEecCCCCc
Q psy17858 97 AKREPGFRVIATGTILDANQTA 118 (157)
Q Consensus 97 ~~~~~~~~l~atG~v~~~d~~r 118 (157)
-+.+|.|.|.++.++.
T Consensus 416 ------~~tv~~G~i~~~~~~~ 431 (435)
T 1jny_A 416 ------GKTVGVGIIVDVKPAK 431 (435)
T ss_dssp ------TEEEEEEEEEEEEC--
T ss_pred ------CeEEEEEEEeeecCcc
Confidence 1789999998876654
No 10
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=10.18 E-value=5.2e+02 Score=19.47 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=22.5
Q ss_pred EEEeecccCCceEEEEEeccCCCCCeEEEEEEEEecCCC
Q psy17858 78 HFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQ 116 (157)
Q Consensus 78 sfygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~ 116 (157)
|.-.|-.+|.+ +++.+.. + +-+|+|+.+..|.
T Consensus 7 t~~~p~~~P~s-vv~l~~~-----d-~h~G~g~~V~~~G 38 (191)
T 1zyo_A 7 SPVKAGDEPAS-LVAIKSG-----P-TTIGFGCRTKIDG 38 (191)
T ss_dssp EEECTTCSCSS-EEEEEET-----T-EEEEEEEEEEC--
T ss_pred eeecCCCCCCe-EEEEEeC-----C-eEEEEEEEEEECC
Confidence 44566677777 9999884 2 7799999987655
Done!