Query psy17858
Match_columns 157
No_of_seqs 105 out of 408
Neff 5.6
Searched_HMMs 13730
Date Sat Aug 17 00:51:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17858.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17858hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tocr1 g.8.1.2 (R:1A-56) Orni 48.6 4.1 0.0003 24.1 1.8 21 60-80 15-35 (57)
2 d1i2ha_ b.55.1.4 (A:) Homer {R 17.1 47 0.0034 23.1 3.0 66 81-154 27-102 (145)
3 d1v97a4 d.87.2.1 (A:415-528) X 16.6 1.3E+02 0.0092 19.0 5.4 37 90-126 4-40 (114)
4 d1x9ya2 d.17.1.4 (A:41-211) St 15.8 11 0.00079 27.1 -0.8 19 127-153 44-62 (171)
5 d1ffvc1 d.87.2.1 (C:178-287) C 15.3 1.2E+02 0.0085 18.8 4.7 38 92-129 5-42 (110)
6 d2cu3a1 d.15.3.2 (A:1-63) Unch 12.8 54 0.004 19.0 2.1 20 22-41 38-57 (63)
7 d2q78a1 d.38.1.7 (A:1-130) Unc 9.8 2.4E+02 0.017 18.5 5.1 50 62-122 50-99 (130)
8 d1ueba2 b.40.4.5 (A:64-126) El 9.4 86 0.0063 18.2 2.2 14 67-80 39-52 (63)
9 d1s0ua2 b.44.1.1 (A:348-437) I 9.2 72 0.0053 20.3 1.8 64 31-112 25-89 (90)
10 d2qn6a2 b.44.1.1 (A:321-415) I 9.0 74 0.0054 20.4 1.8 63 31-111 29-93 (95)
No 1
>d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=48.64 E-value=4.1 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.2
Q ss_pred CceeEEeeccCCCceEEEEEE
Q psy17858 60 NMRYRMLKYTPQHVACMAHFW 80 (157)
Q Consensus 60 ~~r~K~~k~~~~~~~~~asfy 80 (157)
++-.+.++|+.+|.+|+.|=-
T Consensus 15 ~n~a~~~~yfreg~tc~~spa 35 (57)
T d1tocr1 15 NNDAQVDRYFREGTTCLMSPA 35 (57)
T ss_dssp TTSCEEEEEEEETTEEEEEEE
T ss_pred cccHHHHHHHhcCCeeecCCC
Confidence 455799999999999987643
No 2
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.08 E-value=47 Score=23.09 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=43.8
Q ss_pred eecccCCceEEEEEeccCCCCCeEEEEEEEEecCCCCcEEEEEEEEEeeeE----------EEeeceEEEecCCCChhhh
Q psy17858 81 GPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPM----------KIYKKTAFIKDMFNSTLEV 150 (157)
Q Consensus 81 gPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~riI~Kri~LtG~P~----------KI~K~ta~Vr~MF~n~~dV 150 (157)
-|..-...+|=+|.+. ....+||+| ++...+|+-..+..|-.| +.-+..-|---+|.+++|.
T Consensus 27 ~P~s~~~s~V~i~~~~--~~~~yRIvg------~~d~~vvin~~i~~~l~y~kas~~FhqWrd~r~~~V~GL~F~s~~da 98 (145)
T d1i2ha_ 27 VPTSKHAVTVSYFYDS--TRNVYRIIS------LDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHL 98 (145)
T ss_dssp EESCSSCEEEEEEEET--TTTEEEEEE------EETTEEEEEEECCTTCCEEEEETTEEEEEETTTTEEEEEEESSHHHH
T ss_pred EECCCCceEEEEEEcC--CCceEEEEE------ecCCeEEEEeeccCCceeeecccceeEeeeccccceeecccCCHHHH
Confidence 3443445677777765 345789988 235678888877777666 2334335556689999999
Q ss_pred cccc
Q psy17858 151 AKFE 154 (157)
Q Consensus 151 ~~F~ 154 (157)
..|.
T Consensus 99 ~~F~ 102 (145)
T d1i2ha_ 99 SKFA 102 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
No 3
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.57 E-value=1.3e+02 Score=19.04 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=25.4
Q ss_pred EEEEEeccCCCCCeEEEEEEEEecCCCCcEEEEEEEE
Q psy17858 90 FLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKL 126 (157)
Q Consensus 90 vl~f~~~~~~~~~~~l~atG~v~~~d~~riI~Kri~L 126 (157)
+-+|+.......++-+++.|..+.+|.+-..++++.|
T Consensus 4 ~~afK~~~Rr~~diAiv~~a~~v~l~~~~~~i~~~ri 40 (114)
T d1v97a4 4 FSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELAL 40 (114)
T ss_dssp EEEEEEESSSSSCCEEEEEEEEEEESTTSSBEEEEEE
T ss_pred eEEEEeccCccccHHHHhheEEEEEEcCCCEEEEEEE
Confidence 4467766656667889999988888776544554444
No 4
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]}
Probab=15.80 E-value=11 Score=27.07 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=14.0
Q ss_pred EeeeEEEeeceEEEecCCCChhhhccc
Q psy17858 127 TGVPMKIYKKTAFIKDMFNSTLEVAKF 153 (157)
Q Consensus 127 tG~P~KI~K~ta~Vr~MF~n~~dV~~F 153 (157)
-|.||||+| |+-.+|=.|+
T Consensus 44 LGepFKIYK--------fN~~~DgnYY 62 (171)
T d1x9ya2 44 LGEAFKIYK--------FNGEEDNSYY 62 (171)
T ss_dssp ECCCBCCEE--------TTSCBCSSEE
T ss_pred cCCceEEEe--------eccccCCcEe
Confidence 499999987 6666665554
No 5
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=15.33 E-value=1.2e+02 Score=18.83 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=27.0
Q ss_pred EEEeccCCCCCeEEEEEEEEecCCCCcEEEEEEEEEee
Q psy17858 92 AVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGV 129 (157)
Q Consensus 92 ~f~~~~~~~~~~~l~atG~v~~~d~~riI~Kri~LtG~ 129 (157)
+|++......++-+++.+..++.|.+++-==||.+.|-
T Consensus 5 ~y~k~~Rr~~d~a~v~~a~~~~~~~~~i~~~ria~ggv 42 (110)
T d1ffvc1 5 AYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNV 42 (110)
T ss_dssp EEEEECSSTTSCCSEEEEEEEEEETTEEEEEEEEEESS
T ss_pred eEEEeCCCchhHhHHhheeEEEEeCCEEEEEEEEEecc
Confidence 46555555667889999999999876543347777774
No 6
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=12.79 E-value=54 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.8
Q ss_pred EEEeccccccccccCCeEEE
Q psy17858 22 RVKKHRWYGKILKSGNPVIM 41 (157)
Q Consensus 22 ~vkr~~~~~~~lkSkd~li~ 41 (157)
-+.|+.|-+.+|+..|.+.+
T Consensus 38 ivpr~~~~~~~l~~gD~iEI 57 (63)
T d2cu3a1 38 AFLGLEVPDRPLRDGDVVEV 57 (63)
T ss_dssp EEEGGGCCCCCCCTTCEEEE
T ss_pred EcCHHHcCcccCCCCCEEEE
Confidence 35699999999999998854
No 7
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]}
Probab=9.81 E-value=2.4e+02 Score=18.47 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=27.1
Q ss_pred eeEEeeccCCCceEEEEEEeecccCCceEEEEEeccCCCCCeEEEEEEEEecCCCCcEEEE
Q psy17858 62 RYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTK 122 (157)
Q Consensus 62 r~K~~k~~~~~~~~~asfygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~riI~K 122 (157)
+.-.+.|+++|...+.+-..= +..+....+.++.++..+.++|..++.++
T Consensus 50 ~~~l~~~L~~g~ttVG~~v~I-----------~Hla~t~vG~~V~v~a~v~~vdgrrl~F~ 99 (130)
T d2q78a1 50 YELLSRYLPNDYTAVVVETLA-----------RHVKAVPTGTRVAVGVRVVGVVGNRVKFR 99 (130)
T ss_dssp HHHHHTTSCTTEEEEEEEEEE-----------EECSCCBSSEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHhhCCCCceEEEEEEEE-----------EEcCCcCCCCEEEEEEEEEEEeCCEEEEE
Confidence 445567888886665443321 22222223446666666666666666554
No 8
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=9.39 E-value=86 Score=18.21 Aligned_cols=14 Identities=0% Similarity=0.380 Sum_probs=12.7
Q ss_pred eccCCCceEEEEEE
Q psy17858 67 KYTPQHVACMAHFW 80 (157)
Q Consensus 67 k~~~~~~~~~asfy 80 (157)
+|+.+|+.|.+.+|
T Consensus 39 ~~L~eg~~~~v~~~ 52 (63)
T d1ueba2 39 EFFKEGMTALGDMY 52 (63)
T ss_dssp GGCCTTCEEEEEEE
T ss_pred ccccCCCEEEEEEE
Confidence 69999999999888
No 9
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.22 E-value=72 Score=20.27 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=37.2
Q ss_pred cccccCCeEEEEEeeeeEEeeeeeeecCCCceeEEeeccCCCceEEEEEEeecccC-CceEEEEEeccCCCCCeEEEEEE
Q psy17858 31 KILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRS-GTGFLAVQDVAKREPGFRVIATG 109 (157)
Q Consensus 31 ~~lkSkd~li~~~G~RRf~~~Pifs~~~~~~r~K~~k~~~~~~~~~asfygPi~~~-~~~vl~f~~~~~~~~~~~l~atG 109 (157)
+||+.+|+|.+.+|---=-... -+.. .+ .+-...=-|+... +..+-+=+.. ...+||+|.|
T Consensus 25 ~~i~~~E~LmlnvGtatt~G~V-~~vk-------------~d-~~~i~L~~PvCa~~g~rVaiSRri---~~rWRLIG~G 86 (90)
T d1s0ua2 25 EPLRTGEVLMLNIGTATTAGVI-TSAR-------------GD-IADIKLKLPICAEIGDRVAISRRV---GSRWRLIGYG 86 (90)
T ss_dssp CCCCTTCEEEEEETTEEEEEEE-EEEE-------------TT-EEEEEEEEEEECCTTCEEEEEEEC---SSSEEEEEEE
T ss_pred cCCcCCCEEEEEeccccccEEE-EEEe-------------CC-EEEEEecCCEECCCCCEEEEEEEe---CCEEEEEEEE
Confidence 6899999999999963211111 1111 11 1122334565544 4455444554 4589999999
Q ss_pred EEe
Q psy17858 110 TIL 112 (157)
Q Consensus 110 ~v~ 112 (157)
.+.
T Consensus 87 ~I~ 89 (90)
T d1s0ua2 87 TIE 89 (90)
T ss_dssp EEC
T ss_pred Eec
Confidence 874
No 10
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.01 E-value=74 Score=20.41 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=37.7
Q ss_pred cccccCCeEEEEEeeeeEEeeeeeeecCCCceeEEeeccCCCceEEEEEEeeccc-CCc-eEEEEEeccCCCCCeEEEEE
Q psy17858 31 KILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITR-SGT-GFLAVQDVAKREPGFRVIAT 108 (157)
Q Consensus 31 ~~lkSkd~li~~~G~RRf~~~Pifs~~~~~~r~K~~k~~~~~~~~~asfygPi~~-~~~-~vl~f~~~~~~~~~~~l~at 108 (157)
+||+.+|+|.+.+|---=-... -+. | +..+-...=-|+.. .+. -+-.=+.. +..+||+|.
T Consensus 29 ~pi~~~E~LmlniGtatt~G~V-~~v----------k----~d~~~v~L~~Pvca~~g~~rVaiSRri---~~rWRLIG~ 90 (95)
T d2qn6a2 29 DPIRAKETLMLSVGSSTTLGIV-TSV----------K----KDEIEVELRRPVAVWSNNIRTVISRQI---AGRWRMIGW 90 (95)
T ss_dssp CCCCTTCEEEEEETTEEEEEEE-EEE----------C----SSEEEEEEEEEEECSSSSEEEEEEEEE---TTEEEEEEE
T ss_pred cCCcCCCEEEEEeccccccEEE-EEE----------e----CCEEEEEecCCEEecCCCcEEEEEEEe---CCEEEEEeE
Confidence 6899999999999953211111 111 1 11222345578755 343 55555554 457999999
Q ss_pred EEE
Q psy17858 109 GTI 111 (157)
Q Consensus 109 G~v 111 (157)
|++
T Consensus 91 G~I 93 (95)
T d2qn6a2 91 GLV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
Done!