RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17858
(157 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-06
Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 33/124 (26%)
Query: 26 HRWYGKILKSGNPVIMS------VGWRRFQ-TLPIYSKQEDNMRYRMLKY--TPQHVACM 76
H L + +I V + +P+Y D R+L + + V C+
Sbjct: 428 HSHL---LVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFDGSDLRVLSGSISERIVDCI 483
Query: 77 AH---FW--------------GPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAE 119
W GP SG G L ++ G RVI GT LD N +
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVIVAGT-LDINPDDD 540
Query: 120 VTKK 123
K
Sbjct: 541 YGFK 544
Score = 33.5 bits (76), Expect = 0.021
Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 29/144 (20%)
Query: 7 LVGTTGNMNCFSFQARVK--KHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 64
L S ++ V+ +R G ++ P + Y
Sbjct: 1770 LASLAD---VMSIESLVEVVFYR--GMTMQVAVP----------------RDELGRSNYG 1808
Query: 65 MLKYTPQHVA---CMAHFWGPITRSG--TGFLAVQDVAKREPGFRVIATGTILDANQTAE 119
M+ P VA + R G TG+L V+ V + +A G + +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 120 VTKKLKLTGVPMKIYKKTAFIKDM 143
V +KL + + +K+ ++++
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 29.2 bits (65), Expect = 0.63
Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 36/119 (30%)
Query: 43 VGWRRFQTLPIYSKQEDNMRYRMLKYTPQHV----ACMAHFWGPITRSGTGFLAVQDVAK 98
+G R ++ P S + +L+ + ++ + M L++ ++ +
Sbjct: 306 IGVRCYEAYPNTS-----LPPSILEDSLENNEGVPSPM--------------LSISNLTQ 346
Query: 99 REPGFRVIATGTILDANQTAEVT-----KKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 152
+ V T + L A + E++ K L ++G P +Y N TL AK
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG--------LNLTLRKAK 397
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 29.6 bits (67), Expect = 0.42
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 61 MRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDAN 115
M Y + Y+ +H HF G T ++D K G VI IL AN
Sbjct: 2 MEYEITNYSERHTELPGHFIGLNTVDKLEESPLRDFVKSHGGHTVI--SKILIAN 54
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin,
aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus
circulans} PDB: 2c7t_A*
Length = 418
Score = 28.8 bits (65), Expect = 0.66
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 6 RLVGTTGNMNCFSFQARVKKHRWYGKILKSG 36
+ GT G++ FS Q GK+L +G
Sbjct: 175 QRAGTIGDIGAFSCQQ--------GKVLTAG 197
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 6 RLVGTTGNMNCFSFQARVKKHRWYGKILKSG 36
+ VG ++ FSFQ GK++ +G
Sbjct: 171 KRVGELDSIATFSFQN--------GKLMTAG 193
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 26.7 bits (59), Expect = 3.4
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 83 IT-RSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEV 120
I S ++ + +I GT+L Q +
Sbjct: 38 IPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDAL 76
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
+ + GF +VI TGT+LD
Sbjct: 131 LFQHVTGFPAHKVIGTGTLLD 151
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 26.5 bits (59), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 87 GTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKL 124
G G +AVQ +A++ VIAT + +T E K L
Sbjct: 183 GVGSIAVQ-IARQRTDLTVIATAS---RPETQEWVKSL 216
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 26.3 bits (59), Expect = 4.4
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 RLVGTTGNMNCFSFQARVK 24
+ VG + FSF A +K
Sbjct: 166 KKVGGFALASVFSFHA-IK 183
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase,
oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus}
PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Length = 257
Score = 26.4 bits (58), Expect = 4.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 79 FWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDAN 115
F+ TG A + EPG R+ TG++ D +
Sbjct: 78 FFKEGAPLLTGKPATLPMRADEPGDRMRFTGSVRDTS 114
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A,
family 5-2; 1.41A {Pseudoalteromonas haloplanktis}
SCOP: c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 26.4 bits (58), Expect = 4.6
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 15/55 (27%)
Query: 30 GKILKSGNPVI---MSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWG 81
+IL G S+ W YT + VA +
Sbjct: 10 NQILAGGENTSFAGPSLFWSNTGW------------GAEKFYTAETVAKAKTEFN 52
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 26.2 bits (58), Expect = 5.5
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 61 MRYRMLKYTPQHVACMAHF---WGPITRSGTGF 90
+ L++ +A A + + + +G+
Sbjct: 192 LDVDCLEFPYGILAASALYHFSSSELMQKVSGY 224
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 26.0 bits (58), Expect = 6.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 6 RLVGTTGNMNCFSFQA 21
R G+ G+ FSF A
Sbjct: 183 RPAGSLGDAEVFSFHA 198
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 25.9 bits (58), Expect = 7.1
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
VA G RV+ +GTILD
Sbjct: 125 VAYALSGLPPGRVVGSGTILD 145
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 25.6 bits (57), Expect = 7.6
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
VA + GF RVI +G LD
Sbjct: 145 VAWKISGFPKNRVIGSGCNLD 165
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 25.5 bits (57), Expect = 9.1
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
+ GF RVI +GT LD
Sbjct: 130 ATWKFSGFPKERVIGSGTSLD 150
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 25.5 bits (57), Expect = 9.3
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
+ G RVI +GT LD
Sbjct: 131 ATWKFSGLPKERVIGSGTTLD 151
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 25.5 bits (57), Expect = 9.6
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
+E G +V +GT+LD
Sbjct: 125 FFLKESGMDPRKVFGSGTVLD 145
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 25.5 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 96 VAKREPGF---RVIATGTILD 113
+ G RVI +GTILD
Sbjct: 132 ATWKFSGLPHERVIGSGTILD 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.419
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,369,525
Number of extensions: 132070
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 41
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)