RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17858
         (157 letters)



>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 184

 Score = 29.0 bits (64), Expect = 0.20
 Identities = 12/81 (14%), Positives = 23/81 (28%)

Query: 13  NMNCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQH 72
           +    +     +    Y   L +   V  SV      T       + ++   +L+Y    
Sbjct: 69  SKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARIT 128

Query: 73  VACMAHFWGPITRSGTGFLAV 93
           V         +T    G  A+
Sbjct: 129 VTGTTLDGEEVTLRLKGLPAI 149


>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 170

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 61  MRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDAN 115
           M Y +  Y+ +H     HF G  T        ++D  K   G  VI    IL AN
Sbjct: 1   MEYEITNYSERHTELPGHFIGLNTVDKLEESPLRDFVKSHGGHTVI--SKILIAN 53


>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
          anthracis [TaxId: 1392]}
          Length = 292

 Score = 25.6 bits (55), Expect = 3.5
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 7  LVGTTGNMNCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQ 49
          + GTTG     + + +V  +R    ++    PVI   G     
Sbjct: 43 VGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTH 85


>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis
          thaliana) [TaxId: 3702]}
          Length = 102

 Score = 24.5 bits (53), Expect = 4.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 26 HRWYGKILKSGNPVIMSVGWRRF 48
            W  ++ K G  V ++VGW  F
Sbjct: 48 RSWTVRMKKRGEKVFLTVGWENF 70


>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 295

 Score = 24.9 bits (53), Expect = 4.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 7  LVGTTGNMNCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQ 49
          ++GTTG     +   R K      +I+    PVI+  G    +
Sbjct: 41 VLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTE 83


>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
           (Brevicoryne brassicae) [TaxId: 69196]}
          Length = 462

 Score = 24.0 bits (51), Expect = 9.6
 Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 20  QARVKKH--RWYGKILKSGNP 38
           + R K+    ++  ++ +G P
Sbjct: 442 RTRTKRESYTYFKNVVSTGKP 462


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,574
Number of extensions: 25369
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 9
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.7 bits)