BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17862
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A DKDGY+PLH AA +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHL-------------AAREGHLE 49
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A DKDGY+PLH A GH IVE+L++ GAD DG+TPLH A
Sbjct: 50 IVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
+ + E V VLL G DVNAQ G TP LA H
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGH 146
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 4/157 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 4 KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG+TPLH A + + E V VLL G DVNA+ G TPLHLAA H V ++L
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 220 SHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC 256
+ +V+ ++ ++A R G H + E ++
Sbjct: 123 AGADVNAQ--DKFGKTPFDLAIREG-HEDIAEVLQKA 156
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 46 NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +DK+ L AA + +E LL + V+A DKDGY+PLH
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHL------------- 74
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA + +E LL + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 75 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 165 GWTPLHSACKWNNTECVIVL 184
G TP A + + + VL
Sbjct: 134 GKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 82/153 (53%), Gaps = 15/153 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A DKDGY+PLH A A +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLA-------------AREGHLE 49
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A DKDGY+PLH A GH IVE+L++ GAD DG+TPLH A
Sbjct: 50 IVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ + E V VLL G DVNAQ G TP LA
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 4 KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG+TPLH A + + E V VLL G DVNA+ G TPLHLAA H V ++L
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 220 SHPNVDPH 227
+ +V+
Sbjct: 123 AGADVNAQ 130
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 46 NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +DK+ L AA + +E LL + V+A DKDGY+PLH
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHL------------- 74
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA + +E LL + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 75 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 165 GWTPLHSACKWNNTECVIVL 184
G TP A N + VL
Sbjct: 134 GKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG+TPLH A + + E V VLL G DVNA+ G TPLHLAA H V ++L
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
+ +V+
Sbjct: 135 AGADVNAQ 142
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A DKDGY+PLH A A +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLA-------------AREGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A DKDGY+PLH A GH IVE+L++ GAD DG+TPLH A
Sbjct: 62 IVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ + E V VLL G DVNAQ G T ++
Sbjct: 121 AREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 46 NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +DK+ L AA + +E LL + V+A DKDGY+PLH
Sbjct: 41 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHL------------- 86
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA + +E LL + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 87 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 165 GWTPLHSACKWNNTECVIVL 184
G T + N + +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D DGY+PLH A NGH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+ + G TPLH A + E V VLL +G DVNA N G TPLHLAA + H +++ +LL
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGH-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D DGY+PLH A N +I+E N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNATDNDGYTPLHLAASN--GHLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A D G +PLH A GH IVE+L++ GAD DG TPLH A
Sbjct: 73 ------------VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
K+ + E V VLL +G DVNAQ G T
Sbjct: 121 AKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH A + GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DGWTPLH A + E V VLL YG DVNAQ GLTPLHLAA H +++ +LL
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH A + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWI-------------GHPE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A D DG++PLH A NGH IVE+L+++GAD G TPLH A
Sbjct: 62 IVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL +G DVNAQ G T
Sbjct: 121 ADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
++++EAAE+ + ++ LL+ + V+A D DG +PLH A NGH +V+LL+ GAD
Sbjct: 6 KRLIEAAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG TPLH A + + E V +LL+ G D NA+ + G TPLHLAA + H ++V+ +LL
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH-KEVVKLLL 123
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
S DP+ + + ++A G
Sbjct: 124 SQ-GADPNTSDSDGRTPLDLAREHG 147
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ ++EAAE+ + ++ LL++ + V+A D DG +PLH A N K
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAA--------------ENGHK 50
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ LL +A D DG +PLH A NGH +V+LL+ GAD DG TPLH A
Sbjct: 51 EVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
+ + E V +LL+ G D N + G TPL LA H + V ++
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N D + + L A N K + LL +A D DG +PLH A
Sbjct: 31 NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA------------ 78
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
N K + LL +A D DG +PLH A NGH +V+LL+ GAD + DG
Sbjct: 79 --ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 166 WTPLHSACKWNNTECVIVLLNYG 188
TPL A + N E V +L G
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQG 159
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
RK+LEAA + L+ + V+A D G +PLH A Y+GH IVE+L++ GAD
Sbjct: 16 RKLLEAARAGQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+ + G+TPLH A W + E V VLL G DVNA + G+TPLHLAA + +++ +LL
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGY-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
R +LEAA + L+ + + V+A D G +PLH A Y+ +
Sbjct: 16 RKLLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYS-------------GHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + VDA D GY+PLH A Y GH IVE+L++ GAD DG TPLH A
Sbjct: 62 IVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
KW E V VLL +G DVNAQ G T
Sbjct: 121 AKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
++++EAAE+ + ++ L++ + V+A D DG +PLH A GH IV+LLI GAD
Sbjct: 6 KRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG TPLH A K + E V +L++ G DVNA+ + G TPLH AA H ++++ +L+
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH-KEIVKLLI 123
Query: 220 S 220
S
Sbjct: 124 S 124
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ ++EAAE+ + ++ L+++ + V+A D DG +PLH A K
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAA--------------KEGHK 50
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ LL V+A D DG +PLH A GH IV+LLI GAD DG TPLH A
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 110
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
K + E V +L++ G DVN + G TPL LA H + V ++
Sbjct: 111 AKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A NG+ + V+ LI+ GAD + DG TPLH A K + E V +L++ G DVNA+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE 251
+ G TPLH AA H ++++ +L+S ++ +A++ R+ +HY E
Sbjct: 68 SDGRTPLHYAAKEGH-KEIVKLLIS---------KGADVNAKDSDGRTPLHYAAKE 113
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N D + R L A K + LL V+A D DG +PLH A
Sbjct: 31 NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA------------ 78
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
K + LL V+A D DG +PLH A GH IV+LLI GAD + DG
Sbjct: 79 --KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 166 WTPLHSACKWNNTECVIVLLNYG 188
TPL A + N E V +L G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ ++EAAE+ + ++ L+++ + V+A D DG +PLH A N K
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENG--------------HK 50
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ LL V+A D DG +PLH A NGH +V+LLI GAD DG TPLH A
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 110
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
+ + E V +L++ G DVN + G TPL LA H + V ++
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
++++EAAE+ + ++ L++ + V+A D DG +PLH A NGH +V+LLI GAD
Sbjct: 6 KRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG TPLH A + + E V +L++ G DVNA+ + G TPLH AA + H ++V+ +L+
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH-KEVVKLLI 123
Query: 220 S 220
S
Sbjct: 124 S 124
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N D + R L A N K + LL V+A D DG +PLH A
Sbjct: 31 NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE----------- 79
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
N K + LL V+A D DG +PLH A NGH +V+LLI GAD + DG
Sbjct: 80 ---NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 166 WTPLHSACKWNNTECVIVLLNYG 188
TPL A + N E V +L G
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQG 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
++++EAAE+ + ++ LL+ + +A D DG +PLH A NGH IV+LL+ GAD
Sbjct: 6 KRLIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
DG TPLH A + + E V +LL+ G D NA+ + G TPLH AA + H ++++ +LL
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH-KEIVKLLL 123
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
S DP+ + + ++A G
Sbjct: 124 SK-GADPNTSDSDGRTPLDLAREHG 147
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ ++EAAE+ + ++ LL++ + +A D DG +PLH A N K
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAA--------------ENGHK 50
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ LL +A D DG +PLH A NGH IV+LL+ GAD DG TPLH A
Sbjct: 51 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 110
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
+ + E V +LL+ G D N + G TPL LA H + V ++
Sbjct: 111 AENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N D + R L A N K + LL +A D DG +PLH A
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA------------ 78
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
N K + LL +A D DG +PLH A NGH IV+LL+ GAD + DG
Sbjct: 79 --ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 166 WTPLHSACKWNNTECVIVLLNYG 188
TPL A + N E V +L G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+AVD G +PLH A +GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
+ G+TPLH A + E V VLL YG DVNA G TPLHLAA H V ++L
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+AVD G +PLH A + +
Sbjct: 16 KKLLEAARAGQDDEVRILIANGAD-VNAVDNTGLTPLHLAAVS-------------GHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + VDA D G++PLH A GH IVE+L+++GAD + G TPLH A
Sbjct: 62 IVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL YG DVNAQ G T
Sbjct: 121 ADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA +T+ ALL+ +++ + K G++PLH A A++ + E L
Sbjct: 120 AAREGHVETVLALLEKEASQA-CMTKKGFTPLHVA-------------AKYGKVRVAELL 165
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L+ D+ +A K+G +PLH A ++ + +IV+LL+ G +G+TPLH A K N
Sbjct: 166 LERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
E LL YG NA++ G+TPLHLAA H+ V ++L
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 21/180 (11%)
Query: 84 DGYSPLHRACYNDKNK--RKILEAAEHNDSKTLEALLDLD-------STLVDAV------ 128
+GY+PLH A ++ + R +L+ ++++++ + L + +V +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 129 ----DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
+K G +PLH GH + ++LI+ G TT G+TPLH A + N + V L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
L + DVNA+T G +PLH AA H+ D++ +LL + P+ +S+ + IA R G
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLKN-GASPNEVSSDGTTPLAIAKRLG 388
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
+PLH A + GH IV+ L+Q GA + + TPLH A + +TE LL VNA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 194 QTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
+ TPLH AA H+ V ++L + N +P++ +T+ + IA R G
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREG 124
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
V+A KD +PLH A GH N+V+LL++ A+ T G TPLH A + + E V+ L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPN 223
L T G TPLH+AA + R ++L +HPN
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 78 VDAVDKDGYSPLHRAC-YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPL 136
V+A KD +PLH A N K+L E+N + L G++PL
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLL--LENNANPNL-------------ATTAGHTPL 117
Query: 137 HRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
H A GH V L++ A T G+TPLH A K+ +LL NA
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 197 GGLTPLHLAASHSHSRDVLMILL 219
GLTPLH+A H+ + D++ +LL
Sbjct: 178 NGLTPLHVAVHHN-NLDIVKLLL 199
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A+ + + K ++ LL H + V+A K GYSPLH+A H D T L
Sbjct: 318 ASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQG-----------HTDIVT---L 362
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
L + + V DG +PL A G+ ++ ++L
Sbjct: 363 LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
+G +PLH A N LE + LEA D V+A DK+G +PLH A NG
Sbjct: 1 NGRTPLHLAARNGH-----LEVVK----LLLEAGAD-----VNAKDKNGRTPLHLAARNG 46
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
H +V+LL++ GAD +G TPLH A + + E V +LL G DVNA+ G TPLH
Sbjct: 47 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 204 LAASHSHSRDVLMIL 218
LAA + H V ++L
Sbjct: 107 LAARNGHLEVVKLLL 121
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
N R L A N + LL V+A DK+G +PLH A N LE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-----LEVVK--- 52
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
LEA D V+A DK+G +PLH A NGH +V+LL++ GAD +G TPLH
Sbjct: 53 -LLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 171 SACKWNNTECVIVLLNYG 188
A + + E V +LL G
Sbjct: 107 LAARNGHLEVVKLLLEAG 124
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N +DKN R L A N + LL V+A DK+G +PLH A N LE
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-----LEV 83
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
+ LEA D V+A DK+G +PLH A NGH +V+LL++ GA
Sbjct: 84 VK----LLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH NGH I+E+L+++ AD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+ GWTPLH A + E V VLL YG DVNA G TPLHLAA H +++ +LL
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGH-LEIVEVLL 133
Query: 220 SH 221
+
Sbjct: 134 KY 135
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNN-------------GHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A DK G++PLH A Y GH IVE+L+++GAD G+TPLH A
Sbjct: 62 IIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ + E V VLL YG DVNAQ G T ++
Sbjct: 121 AEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA + +E LL + + V+A+D GY+PLH AAE + +E L
Sbjct: 87 AAYRGHLEIVEVLLKYGAD-VNAMDYQGYTPLHL-------------AAEDGHLEIVEVL 132
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
L + V+A DK G + + NG+ ++ E+L
Sbjct: 133 LKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE 107
QD K+ +LEAA + L+ + + V+A D +G +PLH A N + +I+E
Sbjct: 4 QDLGKK-LLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAAN--GQLEIVEVLL 59
Query: 108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT 167
N + V+A D G +PLH A Y+GH IVE+L++ GAD GWT
Sbjct: 60 KNGAD------------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107
Query: 168 PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
PLH A E V VLL +G DVNAQ GLT
Sbjct: 108 PLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 93 CYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
+ +K+LEAA + L+ + V+A D +G +PLH A NG IVE+L+
Sbjct: 1 AFGQDLGKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR 212
+ GAD + G TPLH A + E V VLL +G DVNA G TPLHLAA S
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL-SGQL 118
Query: 213 DVLMILLSH 221
+++ +LL H
Sbjct: 119 EIVEVLLKH 127
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N D N L A N + +L + V+A D G +PLH A Y+
Sbjct: 33 NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD---------- 82
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
+ +E LL + V+A D+ G++PLH A +G IVE+L++ GAD G
Sbjct: 83 ---GHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 166 WTPL 169
T
Sbjct: 139 LTAF 142
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNV 224
G L +A + E I++ N G DVNA + GLTPLHLAA++ V ++L + +V
Sbjct: 7 GKKLLEAAAAGQDDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 225 DP 226
+
Sbjct: 66 NA 67
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G++PLH A Y GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPLH A + + E V VLL G DVNA+ + G+TPLHLAA+ H +++ +LL
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGH-LEIVEVLL 133
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
+ D + ++A +I+ +G
Sbjct: 134 KY-GADVNAQDKFGKTAFDISINNG 157
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G++PLH A Y +I+E N +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGAD-VNAADVVGWTPLHLAAY--WGHLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A D G +PLH A + GH IVE+L++ GAD +G TPLH A
Sbjct: 73 ------------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL YG DVNAQ G T
Sbjct: 121 ANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G++PLH A Y GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPLH A + E V VLL G DVNA + G TPLHLAA+ H +++ +LL
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGH-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G++PLH A Y +I+E N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNASDHVGWTPLHLAAY--FGHLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A D G +PLH A GH +VE+L++ GAD +G+TPLH A
Sbjct: 73 ------------VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL +G DVNAQ G T
Sbjct: 121 ANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPLH A K + E V VLL YG DVNA G TPLHLAA H +++ +LL
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH-LEIVEVLL 133
Query: 220 SH 221
+
Sbjct: 134 KY 135
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH A +I+E N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAAR--VGHLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A+D G +PLH A GH IVE+L+++GAD G TPLH A
Sbjct: 73 ------------VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ E V VLL YG DVNAQ G T ++
Sbjct: 121 ADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G++PLH A + GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPLH A + + E V VLL G DVNA + G TPLHLAA H V ++L
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
+ +V+
Sbjct: 135 NGADVNAQ 142
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G++PLH A + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAH-------------FGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A D G +PLH A GH IVE+L++ GAD + G+TPLH A
Sbjct: 62 IVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
K + E V VLL G DVNAQ G T
Sbjct: 121 AKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
I G TPLH A + E V VLL +G DVNA G TPLHLAA H +++ +LL
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH A A + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLA-------------ATYGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A+D G +PLH A GH IVE+L++ GAD G TPLH A
Sbjct: 62 IVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL +G DVNAQ G T
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + +A D G +PLH A GH IVE+L++ GAD
Sbjct: 4 KKLLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+G TPLH A + E V VLL YG DVNA+ G+TPL+LAA H +++ +LL
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGH-LEIVEVLL 121
Query: 220 SH 221
H
Sbjct: 122 KH 123
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + +A D G +PLH A +I+E N +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAA--VGHLEIVEVLLRNGAD 60
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+AVD +G +PLH A GH IVE+L+++GAD G TPL+ A
Sbjct: 61 ------------VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLA 108
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
W + E V VLL +G DVNAQ G T
Sbjct: 109 AYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
V+AVD +G +PLH A A + +E LL + V+A D G +PL+
Sbjct: 61 VNAVDTNGTTPLHLA-------------ASLGHLEIVEVLLKYGAD-VNAKDATGITPLY 106
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
A Y GH IVE+L++ GAD G T + N + +L
Sbjct: 107 LAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
L A + + V +L+ G D NA + G TPLH+AA+ H V ++L + +V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
I G TPLH A + E V VLL +G DVNA G TPLHLAA H +++ +LL
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH-LEIVEVLL 133
Query: 220 SH 221
H
Sbjct: 134 KH 135
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH A A + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLA-------------ATYGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A+D G +PLH A GH IVE+L++ GAD G TPLH A
Sbjct: 62 IVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL +G DVNAQ G T
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G++PLH A +NGH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPL A + + E V VLL G DVNA G TPLHLAA H V ++L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
+ +V+
Sbjct: 135 NGADVNAQ 142
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G++PLH A +N +I+E N +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFN--GHLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+AVD G +PL A GH IVE+L++ GAD ++G TPLH A
Sbjct: 73 ------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ + E V VLL G DVNAQ G T
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N +D + L A N + +L + V+AVD G +PL A
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL----------- 89
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
+ +E LL + V+A D +G++PLH A GH IVE+L++ GAD G
Sbjct: 90 --FGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 166 WTPLHSACKWNNTECVIVL 184
T + N + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
G TPLH A + + E V VLL G DVNA G TPLHLAA H +++ +LL
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH-LEIVEVLL 133
Query: 220 SH 221
+
Sbjct: 134 KY 135
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G +PLH A K +I+E + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAI--KGHLEIVEVLLKHGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A DK G +PLH A GH IVE+L++ GAD T G+TPLH A
Sbjct: 73 ------------VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL YG DVNAQ G T
Sbjct: 121 ADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 65 KTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL 124
+ +E LL H + V+A DK G +PLH AA + + +E LL +
Sbjct: 61 EIVEVLLKHGAD-VNAADKMGDTPLHL-------------AALYGHLEIVEVLLK-NGAD 105
Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
V+A D G++PLH A GH IVE+L+++GAD G T + N + +L
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D G++PLH A GH IVE+L+++GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
G TPLH A + E V VLL +G DVNA+ G TPLHLAA H V ++L
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D G++PLH A A+ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNATDWLGHTPLHLA-------------AKTGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A D G +PLH A NGH IVE+L++ GAD +G+TPLH A
Sbjct: 62 IVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
+ E V VLL YG DVNAQ G T
Sbjct: 121 AYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA++ + +E LL H + V+A D +G++PLH A Y+ + +E L
Sbjct: 87 AADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYD-------------GHLEIVEVL 132
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
L + V+A DK G + + NG+ ++ E+L
Sbjct: 133 LKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
+G +PLH A NGH +V+LL++ GAD +G TPLH A + + E V +LL G D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMIL 218
VNA+ G TPLHLAA + H V ++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
+G +PLH A N LE + LEA D V+A DK+G +PLH A NG
Sbjct: 1 NGRTPLHLAARNGH-----LEVVK----LLLEAGAD-----VNAKDKNGRTPLHLAARNG 46
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
H +V+LL++ GAD +G TPLH A + + E V +LL G
Sbjct: 47 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
N R L A N + LL V+A DK+G +PLH A N LE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-----LEVVK--- 52
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
LEA D V+A DK+G +PLH A NGH +V+LL++ GA
Sbjct: 53 -LLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN 95
N +DKN R L A N + LL V+A DK+G +PLH A N
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
D +L D+D + LH AC GH IVE L+Q G GW+PLH A E
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
V LL G VNA G TPLH AAS + +M+L ++P+ H +T+ A
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 239 IATRSGIHYGLF 250
IH L+
Sbjct: 150 KGNLKMIHILLY 161
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 82 DKD--GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
DKD G+SPLH A A + ++ALL V+AV+++G +PLH A
Sbjct: 69 DKDDAGWSPLHIA-------------ASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 114
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
I +L++ GA+ T +H A N + + +LL Y N Q G
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 174
Query: 200 TPLHLA 205
TPLHLA
Sbjct: 175 TPLHLA 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA + ++ALL + V+AV+++G +PLH A KN+ +I A+
Sbjct: 81 AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAA--SKNRHEI-------------AV 124
Query: 118 LDLDSTL-VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
+ L+ DA D + +HRA G+ ++ +L+ + A T +G TPLH AC
Sbjct: 125 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 184
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
E +L++ G + + TPL +A
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
D +L D+D + LH AC GH IVE L+Q G GW+PLH A E
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
V LL G VNA G TPLH AAS + +M+L ++P+ H +T+ A
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
IH L+
Sbjct: 149 KGNLKMIHILLY 160
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 82 DKD--GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
DKD G+SPLH A A + ++ALL V+AV+++G +PLH A
Sbjct: 68 DKDDAGWSPLHIA-------------ASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 113
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
I +L++ GA+ T +H A N + + +LL Y N Q G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 173
Query: 200 TPLHLA 205
TPLHLA
Sbjct: 174 TPLHLA 179
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA + ++ALL + V+AV+++G +PLH A KN+ +I A+
Sbjct: 80 AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAA--SKNRHEI-------------AV 123
Query: 118 LDLDSTL-VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
+ L+ DA D + +HRA G+ ++ +L+ + A T +G TPLH AC
Sbjct: 124 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 183
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
E +L++ G + + TPL +A
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
K ++LEAA + + L ALL + A D +PLH A IV+LL+Q GAD
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
G PLH+AC + + E +LL +G VNA TPLH AAS + +V +
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV-EVCSL 142
Query: 218 LLSHPNVDPHILSTSNESAREIA 240
LLSH DP +++ +SA ++A
Sbjct: 143 LLSH-GADPTLVNCHGKSAVDMA 164
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
K +LEAA + + L ALL + A D +PLH AA +N
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL-------------AAGYNR 70
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
+ ++ LL + V A DK G PLH AC GH + ELL++ GA + +TPLH
Sbjct: 71 VRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
Query: 171 SACKWNNTECVIVLLNYGVD 190
A N E +LL++G D
Sbjct: 130 EAASKNRVEVCSLLLSHGAD 149
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 57 EAAEHNDSKTLEALLDH--DSTLVD-----AVDKDGYSPLHRACYNDKNKRKILEAAEHN 109
EAA N + LL H D TLV+ AVD L + +L+AA
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Query: 110 DSKTLEALLDLDSTLVDAVDKDGY-SPLHRACYNGH---ANIVELLIQWGADTQKTTIDG 165
D ++ L L+ +++ + + LH A + H + ELL++ GA+ + D
Sbjct: 190 DLAKVKKTLALE--IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247
Query: 166 WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
TPLH A + + + + VL +G +NA + G T LH AA H + +LLS+ + D
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC-RLLLSYGS-D 305
Query: 226 PHILSTSNESAREI 239
P I+S +A ++
Sbjct: 306 PSIISLQGFTAAQM 319
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
D +L D+D + LH AC GH IVE L+Q G GW+PLH A E
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
V LL G VNA G TPLH AAS + +M+L ++P+ H +T+ A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
+H LF
Sbjct: 149 KGNLKMVHILLF 160
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 82 DKD--GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
DKD G+SPLH A A + ++ALL + V+AV+++G +PLH A
Sbjct: 68 DKDDAGWSPLHIA-------------ASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
I +L++ GA+ T +H A N + V +LL Y N Q G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Query: 200 TPLHLA 205
TPLHLA
Sbjct: 174 TPLHLA 179
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL-VDAVDKDGYSPL 136
V+AV+++G +PLH A KN+ +I A++ L+ DA D + +
Sbjct: 99 VNAVNQNGCTPLHYAA--SKNRHEI-------------AVMLLEGGANPDAKDHYDATAM 143
Query: 137 HRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
HRA G+ +V +L+ + A T +G TPLH AC E L+ G + +
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Query: 197 GGLTPLHLA 205
TPL +A
Sbjct: 204 EEKTPLQVA 212
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
D +L D+D + LH AC GH IVE L+Q G GW+PLH A E
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
V LL G VNA G TPLH AAS + +M+L ++P+ H +T+ A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
+H LF
Sbjct: 149 KGNLKMVHILLF 160
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 82 DKD--GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
DKD G+SPLH A A + ++ALL + V+AV+++G +PLH A
Sbjct: 68 DKDDAGWSPLHIA-------------ASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
I +L++ GA+ T +H A N + V +LL Y N Q G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Query: 200 TPLHLA 205
TPLHLA
Sbjct: 174 TPLHLA 179
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL-VDAVDKDGYSPL 136
V+AV+++G +PLH A KN+ +I A++ L+ DA D + +
Sbjct: 99 VNAVNQNGCTPLHYAA--SKNRHEI-------------AVMLLEGGANPDAKDHYDATAM 143
Query: 137 HRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
HRA G+ +V +L+ + A T +G TPLH AC E L+ G + +
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Query: 197 GGLTPLHLA 205
TPL +A
Sbjct: 204 EEKTPLQVA 212
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%)
Query: 130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
KDG +PLH A NGHA V+ L+ GAD + DG TPLH A K + E V +LL G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMI 217
DVNA++ G TP HLA + H V ++
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 83 KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYN 142
KDG +PLH A N ++ ++ LL + V+A KDG +PLH A N
Sbjct: 7 KDGNTPLHNAAKN-------------GHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKN 52
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
GHA IV+LL+ GAD + DG TP H A K + E V +L G DVNA++ G
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
DG TPLH+A K + E V LL+ G DVNA++ G TPLHLAA + H+ V ++L +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 224 VDPHILSTSNESAREIATRSGIH 246
V+ S + +A ++G H
Sbjct: 68 VNAR--SKDGNTPEHLAKKNGHH 88
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A+D+DG +PLH A GH IVE+L+++GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G TPLH A + E V VLL +G DVNAQ G T
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD DG TPLH A + + E V VLL YG DVNA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
N G+TPLHLAA H +++ +LL H
Sbjct: 78 NFGITPLHLAAIRGH-LEIVEVLLKH 102
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A+D+DG +PLH AA+ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHL-------------AAQLGHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A D G +PLH A GH IVE+L++ GAD G T +
Sbjct: 62 IVEVLLKYGAD-VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 173 CKWNNTECVIVL 184
N + +L
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEA + L+ + V+A+D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ I G TPLH A + E V VLL YG DVNAQ G T ++
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 44/83 (53%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD G TPLH A K + E V VLL +G DVNA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 196 NGGLTPLHLAASHSHSRDVLMIL 218
G TPLHLAA+ H V ++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLL 100
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEA + L+ + V+A+D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
I G TPLH A + E V VLL YG DVNAQ G T ++
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 45/83 (54%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD G TPLH A K + E V VLL +G DVNA+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 196 NGGLTPLHLAASHSHSRDVLMIL 218
G TPLHLAA+ H V ++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLL 100
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
V+ +DG SPLH A A H + + LL + A + D PLH
Sbjct: 79 VNVTSQDGSSPLHVA-------------ALHGRADLIPLLLKHGAN-AGARNADQAVPLH 124
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
AC GH +V+ L+ A K + G TPL AC + E V +LL +G +NA N
Sbjct: 125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF 257
G T LH A H V ++LL +V +L+ +A + A ++ L + + C
Sbjct: 185 GNTALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242
Query: 258 NNL 260
+L
Sbjct: 243 ASL 245
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A DK G +PLH A N H IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
G TPLH + + E V VLL +G DVNAQ G T ++
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD G TPLH A ++ E V VLL G DVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
G TPLHL A + H +++ +LL H
Sbjct: 78 AIGETPLHLVAMYGH-LEIVEVLLKH 102
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A DK G +PLH A ND +I+E N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMND--HLEIVEVLLKNGAD 72
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
V+A+D G +PLH GH IVE+L++ GAD G T +
Sbjct: 73 ------------VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 173 CKWNNTECVIVL 184
N + +L
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEA + L+ + V+A+D G +PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+ G TPLH A + E V VLL YG DVNAQ G T ++
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 45/83 (54%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD G TPLH A K + E V VLL +G DVNA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 196 NGGLTPLHLAASHSHSRDVLMIL 218
+ G TPLHLAA+ H V ++L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLL 100
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
N + R++LEAA+ D +T++ L + S ++ +PLH A ++VE L+Q
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
GAD G PLH+AC + + E +L+ +G VN TPLH AA+ ++
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 125
Query: 215 LMILLSHPNVDP 226
+LL H DP
Sbjct: 126 CKLLLQH-GADP 136
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
R +LEAA+ D +T++ L S ++ +PLH A A +N
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-------------AGYNRVS 58
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V A DK G PLH AC GH + ELL++ GA + +TPLH A
Sbjct: 59 VVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 117
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
E +LL +G D + G TPL L
Sbjct: 118 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
N + R++LEAA+ D +T++ L + S ++ +PLH A ++VE L+Q
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
GAD G PLH+AC + + E +L+ +G VN TPLH AA+ ++
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 123
Query: 215 LMILLSHPNVDP 226
+LL H DP
Sbjct: 124 CKLLLQH-GADP 134
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
R +LEAA+ D +T++ L S ++ +PLH A A +N
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-------------AGYNRVS 56
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V A DK G PLH AC GH + ELL++ GA + +TPLH A
Sbjct: 57 VVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
E +LL +G D + G TPL L
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
N + R++LEAA+ D +T++ L + S ++ +PLH A ++VE L+Q
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
GAD G PLH+AC + + E +L+ +G VN TPLH AA+ ++
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 127
Query: 215 LMILLSHPNVDP 226
+LL H DP
Sbjct: 128 CKLLLQH-GADP 138
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
R +LEAA+ D +T++ L S ++ +PLH A A +N
Sbjct: 14 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-------------AGYNRVS 60
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V A DK G PLH AC GH + ELL++ GA + +TPLH A
Sbjct: 61 VVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
E +LL +G D + G TPL L
Sbjct: 120 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D+ G +PLH A H IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
DG TPLH A + + E V VLL +G DVNAQ G T
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD G TPLH A +++ E V VLL +G DVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
N G TPLHLAA H +++ +LL H
Sbjct: 78 NDGSTPLHLAALFGH-LEIVEVLLKH 102
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A D+ G +PLH A A+++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNANDRKGNTPLHLA-------------ADYDHLE 61
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+E LL + V+A D DG +PLH A GH IVE+L++ GAD G T +
Sbjct: 62 IVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 173 CKWNNTECVIVL 184
N + +L
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A D+ G +PL+ A +GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+TPLH A + E VLL +G DVNAQ G T
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP 226
L A + + V +L+ G DVNA+ GLTPL+LA +H H V ++L + +V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A H + +E LL + + V+AVD G++PLH A + LE AE +
Sbjct: 54 ATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGH-----LEIAE---------V 98
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
L V+A DK G + + NG+ ++ E+L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + +L + V+A D G++PLH A GH IVE+L++ GAD
Sbjct: 16 KKLLEAARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
T G TPLH A ++ E V VLL +G DVNAQ G T
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L GAD G TPLH A + E V VLL G DVNA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
N G TPLHLAA H +++ +LL H
Sbjct: 78 NTGRTPLHLAAWADH-LEIVEVLLKH 102
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
EAA H +L L+ V+ + D SPLH AC GH + V++L++ GA T
Sbjct: 9 EAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
D TPL +AC + +CV +LL +G V +++ +P+H AA H V ++ N
Sbjct: 68 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN 126
Query: 224 VD 225
+D
Sbjct: 127 ID 128
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
EAA H +L L+ V+ + D SPLH AC ++
Sbjct: 9 EAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLG-------------GHLSCVKI 54
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
LL V+ V D ++PL AC +G + V LL+Q GA Q + D +P+H A +
Sbjct: 55 LLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 112
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
+ ECV L+ YG +++ + + TPL+LA + V +L S +V+
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN 192
+SP+H A +GH + LI G T D +PLH AC + CV +LL +G VN
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 193 AQTNGGLTPLHLAASHSHSRDVLMILLSH-PNVDPH--ILSTSNESARE 238
T TPL A S S D + +LL H +V P + S +E+AR
Sbjct: 64 GVTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 111
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
EAA H +L L+ V+ + D SPLH AC GH + V++L++ GA T
Sbjct: 65 EAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
D TPL +AC + +CV +LL +G V +++ +P+H AA H V ++ N
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN 182
Query: 224 VD 225
+D
Sbjct: 183 ID 184
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
EAA H +L L+ V+ + D SPLH AC ++
Sbjct: 65 EAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLG-------------GHLSCVKI 110
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
LL V+ V D ++PL AC +G + V LL+Q GA Q + D +P+H A +
Sbjct: 111 LLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 168
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
+ ECV L+ YG +++ + + TPL+LA + V +L S +V+
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN 192
+SP+H A +GH + LI G T D +PLH AC + CV +LL +G VN
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 193 AQTNGGLTPLHLAASHSHSRDVLMILLSH-PNVDPH--ILSTSNESARE 238
T TPL A S S D + +LL H +V P + S +E+AR
Sbjct: 120 GVTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 167
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + D G SPLH A GH + E+L++ G
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
T TPLH A + V VLL +G DVNA+ +T LH A H+H ++V+ +L+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH-QEVVELLI 120
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
+ D H S ++A +I+ +G
Sbjct: 121 KY-GADVHTQSKFCKTAFDISIDNG 144
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHN 109
+NKR+ L AA + +L +D +D +PL +EAAE+N
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL-------------MEAAENN 55
Query: 110 DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG-ADTQKTTIDGWTP 168
+ ++ L+ LVD D +G + LH A GH +V+ L+ G D GWTP
Sbjct: 56 HLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
+ A ++ + + V +LL+ G D+N + N LH AA S D+ ILL+ D H
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-FSGCVDIAEILLA-AKCDLHA 172
Query: 229 LSTSNESAREIATR 242
++ +S IA R
Sbjct: 173 VNIHGDSPLHIAAR 186
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 30/197 (15%)
Query: 42 EDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRA--------- 92
ED R P ++EAAE+N + ++ L+ LVD D +G + LH A
Sbjct: 42 EDQRTP-------LMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVV 93
Query: 93 ------------CYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
C +D ++ A E+ ++ LL S ++ D + LH A
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAA 152
Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
++G +I E+L+ D I G +PLH A + N +CV++ L+ DV + G T
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Query: 201 PLHLAASHSHSRDVLMI 217
PL A+ +S L +
Sbjct: 213 PLQCASLNSQVWSALQM 229
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP 226
+PLH+A + + + +L+ G +++ + TPL AA ++H V ++ + VDP
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 227 HILSTSNESAREIATRSGIHYGLFETI 253
+ +A + G HY + + +
Sbjct: 73 K--DAEGSTCLHLAAKKG-HYEVVQYL 96
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
+++ D++G++PL A +G +VE L+Q GAD Q + L AC T+ V +
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
LL+ GVDVN G TPL A +H + V M+L S DP I + S ++ ++A
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 161
Query: 244 G 244
G
Sbjct: 162 G 162
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
+++ D++G++PL A +G +VE L+Q GAD Q + L AC T+ V +
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
LL+ GVDVN G TPL A +H + V M+L S DP I + S ++ ++A
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 145
Query: 244 G 244
G
Sbjct: 146 G 146
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
+++ D++G++PL A +G +VE L+Q GAD Q + L AC T+ V +
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
LL+ GVDVN G TPL A +H + V M+L S DP I + S ++ ++A
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 143
Query: 244 G 244
G
Sbjct: 144 G 144
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D G++PLH AC +GH +VELL+Q A T +PLH A K + + V +LL+YG
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 189 VDVNAQTNGGLTPL 202
NA GL P+
Sbjct: 100 ASRNAVNIFGLRPV 113
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
G + LH A G VE L+Q G+D GWTPLH AC + + V +LL + V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 192 NAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
N +PLH AA + H D++ +LLS+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHV-DIVKLLLSY 98
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A+ D ++E LL + S + D G++PLH AC H K +E L
Sbjct: 17 ASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEAC-------------NHGHLKVVELL 62
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPL 169
L LV+ SPLH A NGH +IV+LL+ +GA I G P+
Sbjct: 63 LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 113 TLEALLDLDSTLVDAVDK------DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
+LE DL ++ VD +G + LH A GH IV+ L+Q+G + DGW
Sbjct: 45 SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQT 195
TPLH A NN + L+ G V A T
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G ++V+ +I D +G T LH+A +TE V L+ +GV+VNA + G TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 203 HLAAS 207
H AAS
Sbjct: 108 HCAAS 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 113 TLEALLDLDSTLVDAVDK------DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
+LE DL ++ VD +G + LH A GH IV+ L+Q+G + DGW
Sbjct: 45 SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQT 195
TPLH A NN + L+ G V A T
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G ++V+ +I D +G T LH+A +TE V L+ +GV+VNA + G TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 203 HLAAS 207
H AAS
Sbjct: 108 HCAAS 112
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 96 DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQW 154
DK +L A N+ L +VD + D +PLH A GH ++V L+++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
GAD +G + +H A ++ +T V L+ G DV+ G+TPL AA +HS D
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 215 LMILLS 220
+LL+
Sbjct: 159 TRLLLT 164
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID-GWTPLHSACKWNNTECVIVLLNY 187
DK+ + LH A N ++V+ I GA + D TPLH A + + V+ L+ Y
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
G D + G + +HLAA H+ V ++ +VD
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 125 VDAVDKDGYSPLHRACYNGHA-NIVELLIQW------GADTQKTTIDGWTPLHSACKWNN 177
VD +D++G +PL A Y H+ + LL+ + G K T LH A N
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT-----ALHWAVLAGN 189
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
T + +LL G +V+AQ G + L LA ++V MI
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLA---KQRKNVWMI 226
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
VD +D++G +PL A Y + D L ++ L D K+ + LH
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSV----------DPTRLLLTFNVSVNLGDKYHKN--TALH 182
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
A G+ ++ LL++ GA+ I G + L A + N +
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
I ++ + LD ++ D G+SPLH AC G + +VE+LI GA
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
TPLH A + + V LL Y D+NA G PLH A
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
+I ++ + LD+ ++ D G+SPLH AC + S
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------------SAV 54
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
+E L+ + ++ +++ +PLH A +GH +IV+ L+Q+ AD G PLH AC
Sbjct: 55 VEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 113
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
W + L+ G V+ G P+ A +
Sbjct: 114 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G++PLH AC+ + V +L+ G +N G TPLHLAASH H RD++ LL +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH-RDIVQKLLQY 94
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D G+SPLH AC G + +VE+LI GA TPLH A + + V LL Y
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 189 VDVNAQTNGGLTPLHLA 205
D+NA G PLH A
Sbjct: 91 ADINAVNEHGNVPLHYA 107
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
+I ++ + LD+ ++ D G+SPLH AC + S
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------------SAV 49
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
+E L+ + ++ +++ +PLH A +GH +IV+ L+Q+ AD G PLH AC
Sbjct: 50 VEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
W + L+ G V+ G P+ A +
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G++PLH AC+ + V +L+ G +N G TPLHLAASH H RD++ LL +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH-RDIVQKLLQY 89
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G +PLH AC + + S T L +++ A + +G++ LH A
Sbjct: 75 DFRGNTPLHLAC----EQGCLASVGVLTQSCTTPHL----HSILKATNYNGHTCLHLASI 126
Query: 142 NGHANIVELLIQWGADTQ-KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
+G+ IVELL+ GAD + +G T LH A N + V +LL G DVN T G +
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 201 PLHLAASHSHSR 212
P L +R
Sbjct: 187 PYQLTWGRPSTR 198
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD--- 190
+PLH A I E L+ G D + G TPLH AC+ V VL
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 191 ---VNAQTNGGLTPLHLAASHSH 210
+ A G T LHLA+ H +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGY 129
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G +PLH AC + + S T L +++ A + +G++ LH A
Sbjct: 72 DFRGNTPLHLAC----EQGCLASVGVLTQSCTTPHL----HSILKATNYNGHTCLHLASI 123
Query: 142 NGHANIVELLIQWGADT-QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
+G+ IVELL+ GAD + +G T LH A N + V +LL G DVN T G +
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Query: 201 PLHLAASHSHSR 212
P L +R
Sbjct: 184 PYQLTWGRPSTR 195
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD--- 190
+PLH A I E L+ G D + G TPLH AC+ V VL
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 191 ---VNAQTNGGLTPLHLAASHSH 210
+ A G T LHLA+ H +
Sbjct: 104 HSILKATNYNGHTCLHLASIHGY 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
G L C D+ + AA D + + LL + DA+++ G + L +
Sbjct: 1 GSMLLEEVCVGDR----LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP 56
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
A +ELL Q GA G +P+H A + + + VL+ +G DVNA + G P+HL
Sbjct: 57 AVALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 115
Query: 205 AASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
A HS V + P D H S + E+A + G
Sbjct: 116 AIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 152
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 89 LHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
L C D+ + AA D + + LL + DA+++ G + L + A +
Sbjct: 3 LEEVCVGDR----LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVAL 58
Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
ELL Q GA G +P+H A + + + VL+ +G DVNA + G P+HLA
Sbjct: 59 ELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
HS V + P D H S + E+A + G
Sbjct: 118 GHSSVVSFL---APESDLHHRDASGLTPLELARQRG 150
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 78 VDAVDKDGYSPL--------HRACYNDKNKRKI-LEAAEHNDSKTL--EALLDLDSTLVD 126
V AV+ +G +PL N+ N++ + +EAA + + + +A L+S ++
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 127 AVD--KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
V K G + LH A G+ +++LLIQ D DGWTPLH+A W E +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 185 LNYGVDVNAQTNGGLTPLHLA 205
+ D+ A G T +A
Sbjct: 252 VENLCDMEAVNKVGQTAFDVA 272
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
AC +G V L++ GAD +DG T LH AC +N + V L+ G ++N N G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
PLH AAS + D+ L+S
Sbjct: 107 WIPLHAAASCGY-LDIAEYLISQ 128
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
L A D++ + LL+ + ++ + DG + LH+AC + + ++V+ L++ GA+ +
Sbjct: 44 FLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
+GW PLH+A + L++ G V A + G TPL +
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
L A D++ + LL+ + ++ + DG + LH+AC +D+ +
Sbjct: 44 FLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI--------------DDNVDM 88
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPL 169
L + ++ D +G+ PLH A G+ +I E LI GA +G TPL
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNV 224
G T LH A TE + +L+ DVN + G TPLH AA+H + IL+ +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH-AAAHWGKEEACRILVENL-C 256
Query: 225 DPHILSTSNESAREIATRSGIHY 247
D ++ ++A ++A + Y
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGY 279
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+AC +TE V+ LL G D+N GLT LH A
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 22/165 (13%)
Query: 58 AAEHNDSKTLEALLDHDS--TL-VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
A EH L ALLD + TL ++A + DG + LH A + + T+
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE-------------TV 132
Query: 115 EALLDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
+ LL+ + +DAVD K G SPL A N ++V+LL+Q GA+ G + LHSA
Sbjct: 133 QLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
V L+ G D + + TPL +A SR V+ IL
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA----RSRRVIDIL 232
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D+DG +PLH A L A L L +D + +PLH A
Sbjct: 6 DEDGDTPLHIAVVQGN-----LPAVHR-----LVNLFQQGGRELDIYNNLRQTPLHLAVI 55
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG----VDVNAQTNG 197
++V LL+ GA G T H AC+ + C+ LL+ +D+ A+
Sbjct: 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVD 225
GLT LH+A + V ++L ++D
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADID 143
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
L A G + V +L+ GAD DG+TPLH A + + E V VLL G DVNA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 194 QTNGGLTPLHLA 205
Q G T ++
Sbjct: 64 QDKFGKTAFDIS 75
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V+A DKDGY+PLH A GH IVE+L++ GAD
Sbjct: 4 KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVL 184
G T + N + +L
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
D L A + + V +L+ G DVNA+ G TPLHLAA H V ++L + +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 224 VDPH 227
V+
Sbjct: 61 VNAQ 64
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
+ +LEAA + L+ + + V+A DKDGY+PLH AA +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHL-------------AAREGHLE 49
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
+E LL + V+A DK G + + NG+ ++ E+L
Sbjct: 50 IVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID-GWTPLHSACKWNNTECVIV 183
++A + DG++PLH A + A +V LL GAD K G TPLH A + + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 184 LLNYGVDVNAQTNGGLTPL 202
LL G D A+ GG TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
++A + DG++PLH A H D++ + L D + L G +PLH
Sbjct: 151 LEAENYDGHTPLHVAVI-------------HKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
A A+++ELL++ GAD G TPL SA N +L +G
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN-AQTNGGLTPLHLAASHSHSR 212
W + DG TPLH A + E V +L + G D+N + G TPLHLA + +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAA 205
Query: 213 DVLMILL 219
VL +LL
Sbjct: 206 SVLELLL 212
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN 186
G + LH A G A+ VE L GA G T LH AC+ C VLL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID---GWTPLHSACKWNNTECVIVL 184
V +DG + LH A + H ++ L+ + A + + G T LH A V L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 185 LNYGVDVNAQTNGGLTPLHLAA---SHSHSRDVLMILLSHPN 223
G V GG T LHLA +H+ + +L SHP
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
+I + A + L+ L LV+ D+ G++PL + A+ + +T
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL-------------IWASAFGEIET 51
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
+ LL+ + + K+ S L A G+ +IV LL++ D +G TPL A
Sbjct: 52 VRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ N+ +CV LL G D+ + + G TP+ LA + + R V ++ +H
Sbjct: 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
VN G TPL A++ V +L DPHIL+ ESA +A+ G
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLL--EWGADPHILAKERESALSLASTGG 80
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA D + + LL + DA+++ G + L + A +ELL Q GA
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ-GASPNVQDTS 73
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
G +P+H A + + + VL+ +G DVN G P+HLA H+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 120
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA D + + LL + DA+++ G + L + + LE + S ++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGASPNVQ-- 70
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
D G SP+H A G + +++L++ GAD G P+H A + +
Sbjct: 71 -----------DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
T V+ L D++ + GLTPL LA ++D++ IL H
Sbjct: 120 T-AVVSFLAAESDLHRRDARGLTPLELALQRG-AQDLVDILQGH 161
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G SP+H +AA TL+ L++ + V+ D G P+H A
Sbjct: 71 DTSGTSPVH-------------DAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQ 116
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
GH +V L +D + G TPL A + + V +L + V
Sbjct: 117 EGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA D + + LL + DA+++ G + L + A +ELL Q GA
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ-GASPNVQDTS 67
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
G +P+H A + + + VL+ +G DVN G P+HLA H+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D G SP+H A G + +++L++ GAD G P+H A + +T V+ L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAE 123
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
D++ + GLTPL LA ++D++ IL H
Sbjct: 124 SDLHRRDARGLTPLELALQRG-AQDLVDILQGH 155
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G SP+H +AA TL+ L++ + V+ D G P+H A
Sbjct: 65 DTSGTSPVH-------------DAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQ 110
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
GH +V L +D + G TPL A + + V +L
Sbjct: 111 EGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
+++A ++ D ++ LL+ + + ++ G++PLH A +IVELL++ GAD
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+G TP A + + + + L+ G DVN G T AA + + + +
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 222 PNVD 225
NV+
Sbjct: 149 ANVN 152
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 27/182 (14%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE-AAEHNDSKT 113
+++A ++ D ++ LL+ + + ++ G++PLH A ++ I+E H
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPV 86
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
L K+G +P A G +++L + GAD + G+T A
Sbjct: 87 LR-------------KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133
Query: 174 KWNNTECVIVLLNYGVDVNAQ----------TNGGLTPLHLAASHSHSRDVLMILLSHPN 223
+ + + L G +VN + GG T L AA H +VL ILL
Sbjct: 134 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV-EVLKILLDEMG 192
Query: 224 VD 225
D
Sbjct: 193 AD 194
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 130 KDGYSPLHRACYNGHANIVELLI-QWGADTQKTTIDGWTPL-HSACKWNNTECVIV---L 184
K G + L A GH ++++L+ + GAD G L H+ ++++ + L
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSH 210
L++G DVN + G TPL LA H
Sbjct: 226 LDHGADVNVRGERGKTPLILAVEKKH 251
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 29/171 (16%)
Query: 42 EDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN------ 95
ED + +++AAE + L+ LLD V+A D G + L A +
Sbjct: 159 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218
Query: 96 ------------------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
++ K ++ A E ++ LL+ + ++ D DG + L
Sbjct: 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 278
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
A I ELL + GA T D + +A + + V VLL++G
Sbjct: 279 LAVELKLKKIAELLCKRGAST-----DCGDLVMTARRNYDHSLVKVLLSHG 324
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 88 PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
PLH+AC N+ ++ LL +L+ D+DG PLH + I
Sbjct: 5 PLHQACM-------------ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 51
Query: 148 VELLIQWGADTQKTTID------GWTPLHSACKWNNTECVIVLLNYGV--DVNAQTNGGL 199
L+ + + +D GWTP H AC N E V L + + D+N TN G+
Sbjct: 52 TSFLL---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 200 TPLHLAA 206
T LHLA
Sbjct: 109 TCLHLAV 115
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
+A N+ ++ LL +L+ D+DG PLH + + H + L +
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
++ + L D D G++P H AC G+ +V+ L D K T G T LH A
Sbjct: 58 KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
E L+ G V + PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
DK PLHRA A K +E L L + V+ DK G++PL A
Sbjct: 137 DKFNQIPLHRA-------------ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 142 NGHANIVELLIQ-WGAD 157
GH + LL++ +GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 88 PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
PLH+AC N+ ++ LL +L+ D+DG PLH + I
Sbjct: 5 PLHQACME-------------NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 51
Query: 148 VELLIQWGADTQKTTID------GWTPLHSACKWNNTECVIVLLNYGV--DVNAQTNGGL 199
L+ + + +D GWTP H AC N E V L + + D+N TN G+
Sbjct: 52 TSFLL---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 200 TPLHLAA 206
T LHLA
Sbjct: 109 TCLHLAV 115
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
+A N+ ++ LL +L+ D+DG PLH + + H + L +
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
++ + L D D G++P H AC G+ +V+ L D K T G T LH A
Sbjct: 58 KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
E L+ G V + PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
DK PLHRA A K +E L L + V+ DK G++PL A
Sbjct: 137 DKFNQIPLHRA-------------ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 142 NGHANIVELLIQ-WGAD 157
GH + LL++ +GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 88 PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
PLH+AC N+ ++ LL +L+ D+DG PLH + I
Sbjct: 5 PLHQACM-------------ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 51
Query: 148 VELLIQWGADTQKTTID------GWTPLHSACKWNNTECVIVLLNYGV--DVNAQTNGGL 199
L+ + + +D GWTP H AC N E V L + + D+N TN G+
Sbjct: 52 TSFLL---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 200 TPLHLAA 206
T LHLA
Sbjct: 109 TCLHLAV 115
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
+A N+ ++ LL +L+ D+DG PLH + + H + L +
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
++ + L D D G++P H AC G+ +V+ L D K T G T LH A
Sbjct: 58 KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
E L+ G V + PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
DK PLHRA A K +E L L + V+ DK G++PL A
Sbjct: 137 DKFNQIPLHRA-------------ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 142 NGHANIVELLIQ-WGAD 157
GH + LL++ +GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
+I + A + L+ L LV+ D+ G++PL + A+ + +T
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL-------------IWASAFGEIET 51
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
+ LL+ + + K+ S L A G+ +IV LL++ D +G TPL A
Sbjct: 52 VRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
N+ +CV LL G D+ + + G TP+ LA + + R V ++ +H
Sbjct: 111 HGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
VN G TPL A++ V +L DPHIL+ ESA +A+ G
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLL--EWGADPHILAKERESALSLASTGG 80
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
+++A ++ D ++ LL+ + + ++ G++PLH A +IVELL++ GAD
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+G TP A + + + + L+ G DVN G T AA + + + +
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 222 PNVD 225
NV+
Sbjct: 129 ANVN 132
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 27/182 (14%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE-AAEHNDSKT 113
+++A ++ D ++ LL+ + + ++ G++PLH A ++ I+E H
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPV 66
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
L K+G +P A G +++L + GAD + G+T A
Sbjct: 67 LR-------------KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Query: 174 KWNNTECVIVLLNYGVDVNAQ----------TNGGLTPLHLAASHSHSRDVLMILLSHPN 223
+ + + L G +VN + GG T L AA H +VL ILL
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV-EVLKILLDEMG 172
Query: 224 VD 225
D
Sbjct: 173 AD 174
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 130 KDGYSPLHRACYNGHANIVELLI-QWGADTQKTTIDGWTPL-HSACKWNNTECVIV---L 184
K G + L A GH ++++L+ + GAD G L H+ ++++ + L
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSH 210
L++G DVN + G TPL LA H
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKH 231
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 42 EDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN------ 95
ED + +++AAE + L+ LLD V+A D G + L A +
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 96 ------------------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
++ K ++ A E ++ LL+ + ++ D DG + L
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 138 RACYNGHANIVELLIQWGADT 158
A I ELL + GA T
Sbjct: 259 LAVELKLKKIAELLCKRGAST 279
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
+LEAA D+K ++ +L + VD VD +G +PL+ A +N I + LI GAD
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGV-DVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
+P A TE + +L + D+N G L AA H +V ++L
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
+LEAA D+K ++ +L + VD VD +G +PL+ A +N ND +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-------------NDIEIA 55
Query: 115 EALLD--LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHS 171
+AL+D D L +++ SP A G I+ +++ D K G L
Sbjct: 56 KALIDRGADINLQNSISD---SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Query: 172 ACKWNNTECVIVLLNYGV-DVNAQTNGGLTPL----HLAASHSHSRDVLMILLSHPNVDP 226
A + + + V +LL G D++ Q + G T L L + +D++ +L+ + D
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQ 171
Query: 227 HILSTSNESAREIATRSG 244
I S +A + A + G
Sbjct: 172 SIKDNSGRTAMDYANQKG 189
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
A ++N E LL S V+ D G +PL + G++ + L++ GA+ ++
Sbjct: 75 AVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
G TPL A K+ +E V LL G D++A+ GLT
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D +G + L A N I E L+ G++ G TPL + + +E LL +G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILS--TSNESAR 237
+VN + G TPL +A+ + S V +L ++ L+ T+ SAR
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 105 AAEHNDSKTLEALL-DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTT 162
AA D + L LL D D VDAVD++G + L G V LL + GAD +
Sbjct: 51 AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
G T LH A + E V L+ G D+ + GLT L LA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 58 AAEHNDSKTLEALL-DHDSTLVDAVDKDGYSPLH--RACYNDKNKRKILEAAEHNDSKTL 114
AA D + L LL D D VDAVD++G + L +DK R + EA D + +
Sbjct: 51 AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ G + LH A +VE L++ GAD + G T L A
Sbjct: 108 ---------------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGGLTPLHLAASHSHSRDV--LMILLS 220
+G T L + +CV +L G D++ + GGLT LH+AA + V L+ L +
Sbjct: 75 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Query: 221 HPNVDPHILSTSNESAREI--ATRSG--IHYGLFETIEPCFNNL 260
V+ T+ E AREI T G + +G +E N L
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI-DGWTPLHSACKWNNTECVIVLLNY 187
D G +PLH A + ++L++ A + DG TPL A + V L+
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
D+NA N G T LH AA+ +++ V ++L+ H N D +E+ +A R G
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDKDETPLFLAAREG 195
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 63/162 (38%), Gaps = 48/162 (29%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L AA D+ + LL + +T ++A DG +PL A R +E
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA------RLAIE 131
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+E L+ D+ ++A D G + LH W
Sbjct: 132 G-------MVEDLITADAD-INAADNSGKTALH----------------W---------- 157
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
A NNTE V +LL + + +AQ + TPL LAA
Sbjct: 158 -------AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V A DK+G +PLH A NGH +V+LL++ GAD
Sbjct: 26 KKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 160 KTTIDGWTPLHSACKWNNTECVIVL 184
G T + N + +L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
L A G + V +L+ GAD +G TPLH A + + E V +LL G DV AQ
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 196 NGGLTPLHLA 205
G T ++
Sbjct: 88 KFGKTAFDIS 97
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNV 224
L A + + V +L+ G DV A+ G TPLHLAA + H V ++L + +V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+K+LEAA + L+ + V A DK+G +PLH A NGH +V+LL++ GAD
Sbjct: 8 KKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 160 KTTIDGWTPLHSACKWNNTECVIVL 184
G T + N + +L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
L A G + V +L+ GAD +G TPLH A + + E V +LL G DVNAQ
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 195 TNGGLTPLHLA 205
G T ++
Sbjct: 69 DKFGKTAFDIS 79
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
D L A + + V +L+ G DV A+ G TPLHLAA + H V ++L + +
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 224 VDPH 227
V+
Sbjct: 65 VNAQ 68
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 105 AAEHNDSKTLEALL-DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTT 162
AA D + L LL D D VDAVD++G + L G V LL + GAD +
Sbjct: 52 AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
G T LH A + E V L+ G D+ + GLT L LA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGGLTPLHLAASHSHSRDV--LMILLS 220
+G T L + +CV +L G D++ + GGLT LH+AA + V L+ L +
Sbjct: 76 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 221 HPNVDPHILSTSNESAREI--ATRSG--IHYGLFETIEPCFNNL 260
V+ T+ E AREI T G + +G +E N L
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 179
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 58 AAEHNDSKTLEALL-DHDSTLVDAVDKDGYSPLH--RACYNDKNKRKILEAAEHNDSKTL 114
AA D + L LL D D VDAVD++G + L +DK R + EA D + +
Sbjct: 52 AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
+ G + LH A +VE L++ GAD + G T L A
Sbjct: 109 ---------------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
+++G + LH A + +IV+ LI GA+ GWTPLH A N+T + L+ +G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 189 VDVNAQT 195
+ A T
Sbjct: 111 AAIFATT 117
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
A G +V+ ++ D + +G T LH+A N V L+ G +VN+ + G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
TPLH AAS + + + M L+ H
Sbjct: 88 WTPLHCAASCNDTV-ICMALVQH 109
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
++A + DG++PLH A H D++ + L D + L G +PLH
Sbjct: 151 LEAENYDGHTPLHVAVI-------------HKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
A A+++ELL++ GAD G TPL SA N +L +G
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN-AQTNGGLTPLHLAASHSHSR 212
W + DG TPLH A + E V +L + G D+N + G TPLHLA + +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAA 205
Query: 213 DVLMILL 219
VL +LL
Sbjct: 206 SVLELLL 212
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN 186
G + LH A G A+ VE L GA G T LH AC+ C VLL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID---GWTPLHSACKWNNTECVIVL 184
V +DG + LH A + H ++ L+ + A + + G T LH A V L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 185 LNYGVDVNAQTNGGLTPLHLAA---SHSHSRDVLMILLSHPN 223
G V GG T LHLA +H+ + +L SHP
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 131 DGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
DG++PL A +G A I + + Q + +T G T LH A +++
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
++ LL D N Q N G TPLH A S + ++ V IL+ + D
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 116
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
DG++PL A + E + + + ++L + D+ G + LH A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTNGGLTPL 202
++ + L++ AD G TPLH+A + +L+ N D++A+ + G TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 203 HLAA 206
LAA
Sbjct: 129 ILAA 132
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G +PLH A D + L+ +T +DA DG +PL A
Sbjct: 87 DNMGRTPLHAAVSADAQG-------------VFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
++E LI AD G + LH A NN + +VLL G + + Q N TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 202 LHLAASHSHSRDVLMILLSH 221
L LAA S + +LL H
Sbjct: 194 LFLAAREG-SYETAKVLLDH 212
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L AA D++ + L+ + +T +DA DG +PL +
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL-------------IL 130
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 131 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 165 GWTPLHSACKWNNTECVIVLLNY 187
TPL A + + E VLL++
Sbjct: 190 EETPLFLAAREGSYETAKVLLDH 212
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 70 LLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD 129
LLD+ +V+ D +G + LH + H + ++ LLD VD +
Sbjct: 99 LLDY---VVNIADSNGNTALHYS-------------VSHANFPVVQQLLDSGVCKVDKQN 142
Query: 130 KDGYSPLHR---ACYNGHANI--VELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
+ GYSP+ A +I V L + G K + G T L A + V L
Sbjct: 143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL 202
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
L DVN Q + G T L A H H +++ +LL+ P+ D + +A +A +G
Sbjct: 203 LACEADVNVQDDDGSTALMCACEHGH-KEIAGLLLAVPSCDISLTDRDGSTALMVALDAG 261
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 46 NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N D N L + H + ++ LLD VD ++ GYSP+ +
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT--------ALAT 156
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+D +T+ L L + A + G + L A +G ++V+ L+ AD D
Sbjct: 157 LKTQDDIETVLQLFRLGNINAKA-SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD 215
Query: 165 GWTPLHSACKWNNTECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
G T L AC+ + E +LL D++ G T L +A S ++ +L S N
Sbjct: 216 GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS-EIASMLYSRMN 274
Query: 224 V 224
+
Sbjct: 275 I 275
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 125 VDAVDKDGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLH 170
V+ DG++PL A +G A I + + Q + +T G T LH
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
A +++ ++ LL D N Q N G TPLH A S + ++ V IL+ + D
Sbjct: 64 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 117
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
V+ DG++PL A + E + + + ++L + D+ G + LH
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTN 196
A ++ + L++ AD G TPLH+A + +L+ N D++A+ +
Sbjct: 64 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 123
Query: 197 GGLTPLHLAA 206
G TPL LAA
Sbjct: 124 DGTTPLILAA 133
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA ++ S + LL+ S + D G +PLH A D + L
Sbjct: 65 AARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQG-------------VFQIL 110
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
+ +T +DA DG +PL A ++E LI AD G + LH A NN
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ +VLL G + + Q N TPL LAA S + +LL H
Sbjct: 171 VDAAVVLLKNGANKDMQNNREETPLFLAAREG-SYETAKVLLDH 213
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 75 STLVDAVDKDGYSPLHRACYNDKN--KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG 132
++L + D+ G + LH A ++ +++LEA+ D+ + D + G
Sbjct: 48 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-------------DANIQDNM---G 91
Query: 133 YSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
+PLH A + ++LI+ A D DG TPL A + + L+N DV
Sbjct: 92 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
Query: 192 NAQTNGGLTPLH 203
NA + G + LH
Sbjct: 152 NAVDDLGKSALH 163
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L AA D++ + L+ + +T +DA DG +PL +
Sbjct: 85 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL-------------IL 131
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 132 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 190
Query: 165 GWTPLHSACKWNNTECVIVLLNY 187
TPL A + + E VLL++
Sbjct: 191 EETPLFLAAREGSYETAKVLLDH 213
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
DG++PL A + E + + + ++L + D+ G + LH A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTNGGLTPL 202
++ + L++ AD G TPLH+A + +L+ N D++A+ + G TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 203 HLAA 206
LAA
Sbjct: 129 ILAA 132
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 131 DGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
DG++PL A +G A I + + Q + +T G T LH A ++
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
++ LL D N Q N G TPLH A S + ++ V IL+ + D
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 116
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G +PLH A D + L+ +T +DA DG +PL A
Sbjct: 87 DNMGRTPLHAAVSADAQG-------------VFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
++E LI AD G + LH A NN + +VLL G + + Q N TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 202 LHLAASHSHSRDVLMILLSH 221
L LAA S + +LL H
Sbjct: 194 LFLAAREG-SYETAKVLLDH 212
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L AA D++ + L+ + +T +DA DG +PL +
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL-------------IL 130
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 131 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 165 GWTPLHSACKWNNTECVIVLLNY 187
TPL A + + E VLL++
Sbjct: 190 EETPLFLAAREGSYETAKVLLDH 212
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
G PLH A G I+E L+ GAD TPL SA + CV +LL+ G D
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 192 NAQTNGGLTPL 202
+ GLT L
Sbjct: 95 TVKGPDGLTAL 105
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
G PLH A D + +ILE L L ++A DK +PL A Y GH
Sbjct: 35 GRKPLHYAA--DCGQLEILE------------FLLLKGADINAPDKHHITPLLSAVYEGH 80
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHS 171
+ V+LL+ GAD DG T L +
Sbjct: 81 VSCVKLLLSKGADKTVKGPDGLTALEA 107
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
A NG + V+ + G D +T G PLH A E + LL G D+NA
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 199 LTPLHLAASHSHSRDVLMIL 218
+TPL A H V ++L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLL 88
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+IV+ L+Q + K T G T LH C +N EC+ +LL + G TPL +A
Sbjct: 186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Query: 206 A--SHSHSRDVLMILLS 220
H H ++L LS
Sbjct: 246 KRLKHEHCEELLTQALS 262
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
++L + D+ G + LH A ++ + L++ AD G TPLH+A +
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVF 71
Query: 182 IVLL-NYGVDVNAQTNGGLTPLHLAA 206
+LL N D++A+ + G TPL LAA
Sbjct: 72 QILLRNRATDLDARMHDGTTPLILAA 97
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
I + + Q + +T G T LH A +++ ++ LL D Q N G TPLH A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 207 SHSHSRDVLMILLSHPNVD 225
S + ++ V ILL + D
Sbjct: 64 S-ADAQGVFQILLRNRATD 81
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 92 ACYNDKNKRKILEAAEHNDSK-TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVEL 150
A D R L AA D++ + LL +T +DA DG +PL A ++E
Sbjct: 48 AXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLED 107
Query: 151 LIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
LI AD G + LH A NN + +VLL G + + Q N TPL LAA
Sbjct: 108 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG- 166
Query: 211 SRDVLMILLSH 221
S + +LL H
Sbjct: 167 SYETAKVLLDH 177
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 75 STLVDAVDKDGYSPLHRACYNDKN--KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG 132
++L + D+ G + LH A ++ +++LEA+ D+ + D + G
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-------------DAXIQDNM---G 55
Query: 133 YSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
+PLH A + ++L++ A D DG TPL A + + L+N DV
Sbjct: 56 RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADV 115
Query: 192 NAQTNGGLTPLH 203
NA + G + LH
Sbjct: 116 NAVDDLGKSALH 127
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 48 QDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAA 106
QD R L AA D++ + LL + +T +DA DG +PL A R LE
Sbjct: 51 QDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAA------RLALEG- 103
Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 104 ------MLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEE 156
Query: 167 TPLHSACKWNNTECVIVLLNY 187
TPL A + + E VLL++
Sbjct: 157 TPLFLAAREGSYETAKVLLDH 177
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
+L AA+ ND + L LL + V G + LH A D LEAA +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-----LEAA----MVLM 57
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID---------- 164
EA +L + + +G + LH A N + N+V L+ GA
Sbjct: 58 EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 165 ---GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
G PL A + E V +L+ +G D+ AQ + G T LH+
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+ I L+ GA+ G+ +H A + + + LL + DVN + N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
HLAA H R V+ L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
G PLH A G I+E L+ GAD TPL SA + CV +LL+ G D
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 192 NAQTNGGLTPL 202
+ GLT
Sbjct: 100 TVKGPDGLTAF 110
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
++ + AA+ + LE LL L ++A DK +PL A Y GH + V+LL+ GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 158 TQKTTIDGWTPLHS 171
DG T +
Sbjct: 99 KTVKGPDGLTAFEA 112
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
A NG + V+ + G D +T G PLH A E + LL G D+NA
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 199 LTPLHLAASHSHSRDVLMIL 218
+TPL A H V ++L
Sbjct: 74 ITPLLSAVYEGHVSCVKLLL 93
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
++L + D+ G + LH A ++ + L++ AD G TPLH+A +
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74
Query: 182 IVLL-NYGVDVNAQTNGGLTPLHLAA 206
+L+ N D++A+ + G TPL LAA
Sbjct: 75 QILIRNRATDLDARMHDGTTPLILAA 100
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
A I + + Q + +T G T LH A +++ ++ LL D N Q N G TPLH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 205 AASHSHSRDVLMILLSHPNVD 225
A S + ++ V IL+ + D
Sbjct: 65 AVS-ADAQGVFQILIRNRATD 84
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D G +PLH A D + L+ +T +DA DG +PL A
Sbjct: 55 DNMGRTPLHAAVSADAQG-------------VFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
++E LI AD G + LH A NN + +VLL G + + Q N TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 202 LHLAASHSHSRDVLMILLSH 221
L LAA S + +LL H
Sbjct: 162 LFLAAREG-SYETAKVLLDH 180
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 75 STLVDAVDKDGYSPLHRACYNDKN--KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG 132
++L + D+ G + LH A ++ +++LEA+ D+ + D + G
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-------------DANIQDNM---G 58
Query: 133 YSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
+PLH A + ++LI+ A D DG TPL A + + L+N DV
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 192 NAQTNGGLTPLH 203
NA + G + LH
Sbjct: 119 NAVDDLGKSALH 130
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L AA D++ + L+ + +T +DA DG +PL +
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL-------------IL 98
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 99 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157
Query: 165 GWTPLHSACKWNNTECVIVLLNY 187
TPL A + + E VLL++
Sbjct: 158 EETPLFLAAREGSYETAKVLLDH 180
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+ I L+ GA+ G+ +H A + + + LL + DVN + N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
HLAA H R V+ L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+ I L+ GA+ G+ +H A + + + LL + DVN + N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
HLAA H R V+ L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+ I L+ GA+ G +H A + + + LL + DVN + N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
HLAA H R V+ L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
G+ I L+ GA+ G+ +H A + + + LL DVN + N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
HLAA H R V+ L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
+D +PL +A E L+Q GA+ + G PLH A +T + L G
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
D+ A+ + G PL +A +++ V ++ L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
N +++A N E LL + V+ D G PLH A GH + L ++ GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVL 184
+G PL A + N + V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
EAA+ + L LD+ V+ +DK G + L+ AC+ H D +E
Sbjct: 79 EAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGG-----------HKD--IVEX 124
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
L + ++ +K G + LH A + G+A+IV+LL+ GA T I+
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
Q +ID PLH A K N + L+ V VN G T L+ A H +D++ L
Sbjct: 69 QAESID--NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC-HGGHKDIVEXL 125
Query: 219 LSHPNVD 225
+ PN++
Sbjct: 126 FTQPNIE 132
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
N +++A N E LL + V+ D G PLH A GH + L ++ GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVL 184
+G PL A + N + V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
+D +PL +A E L+Q GA+ + G PLH A +T + L G
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
D+ A+ + G PL +A +++ V ++ L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
N +++A N E LL + V+ D G PLH A GH + L ++ GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVL 184
+G PL A + N + V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
+D +PL +A E L+Q GA+ + G PLH A +T + L G
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
D+ A+ + G PL +A +++ V ++ L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 35/156 (22%)
Query: 98 NKRKILEAAEHNDSKTLEALLDL----DSTLVDAVDKD---GYSPLHRA---CYNGHANI 147
++R I +A ++ + LE+LL L D+ KD G + L +A +NG +
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDT 72
Query: 148 VELL--IQWGADTQKTTID---------GWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
+ LL + D+ K ++ G T LH A + N V +L+ G DV A N
Sbjct: 73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAAN 132
Query: 197 G--------------GLTPLHLAASHSHSRDVLMIL 218
G G PL LAA + V +L
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
+T +DA DG +PL A ++E LI AD G + LH A NN +
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+VLL G + + Q N TPL LAA S + +LL H
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREG-SYETAKVLLDH 103
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQ--DKNKRNILEAAE 60
DD++ + E+MQ RDG G + ++ ++ I+ N + ++ E +E
Sbjct: 11 DDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYN--ILKIQKVCNKKLWERYTHRRKEVSE 68
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S V+A+ G+ H Y + AE N SK+ + + +
Sbjct: 69 ENHNHANERMLFHGSPFVNAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 125
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
V KD R+CY H ++ + G
Sbjct: 126 GGGTGCPVHKD------RSCYICHRQLLFCRVTLG 154
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQ--DKNKRNILEAAE 60
DD++ + E+MQ RDG G + ++ ++ I+ N + ++ E +E
Sbjct: 39 DDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYN--ILKIQKVCNKKLWERYTHRRKEVSE 96
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S V+A+ G+ H Y + AE N SK+ + + +
Sbjct: 97 ENHNHANERMLFHGSPFVNAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 153
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
V KD R+CY H ++ + G
Sbjct: 154 GGGTGCPVHKD------RSCYICHRQLLFCRVTLG 182
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
SK L++ L T D G+S + A + + +V L+ GA K ++ PLH
Sbjct: 12 SKQLKSFLSSKDTF--KADVHGHSASYYAIADNNVRLVCTLLNAGA--LKNLLENEFPLH 67
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
A +T+ V +LL G+D + + G T L+ A + + V + +
Sbjct: 68 QAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
+V+ +IQ G DG T LH A +N +C+ +LL V G T L +A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 207 SHSH 210
H
Sbjct: 268 KKHH 271
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
+V+ +IQ G DG T LH A +N +C+ +LL V G T L +A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 207 SHSH 210
H
Sbjct: 249 KKHH 252
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQ--DKNKRNILEAAE 60
DD++ + E+MQ RDG G + ++ ++ I+ N + ++ E +E
Sbjct: 39 DDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYN--ILKIQKVCNKKLWERYTHRRKEVSE 96
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S V+A+ G+ H Y + AE N SK+ + + +
Sbjct: 97 ENHNHANERMLFHGSPFVNAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 153
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
V KD R+CY H ++ + G
Sbjct: 154 GGGTGCPVHKD------RSCYICHRQLLFCRVTLG 182
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA + + ALL+ + L +A + G P+ G A + ELL+ GA+
Sbjct: 19 AAARGRVEEVRALLEAGA-LPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPA 76
Query: 165 GWT-PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
T P+H A + + ++VL G ++ + G P+ LA H RDV L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH-RDVARYL 130
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEH 108
D+N L HN+ + A VD DG + Y K + + AA+
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY--KGRTALHYAAQV 289
Query: 109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
++ ++ L+ + D D+DG +P+ A G +V LIQ GA +
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA +T+ LL+ + +A+++ G P+ + G A + ELL+ GA+
Sbjct: 19 AAARGQVETVRQLLEAGAD-PNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCADPA 76
Query: 165 GWT-PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
T P+H A + + ++VL G ++ G P+ LA H RD+ L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH-RDIARYL 130
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D + +H A G + V LI+ G G T LH ACK+ + L + G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+V++ +G P+HLA ++ D+++ L+
Sbjct: 77 -EVHSLWHGQ-KPIHLAVX-ANKTDLVVALV 104
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA + + ALL+ + +A + G P+ G A + ELL+ GA+
Sbjct: 19 AAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPA 76
Query: 165 GWT-PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
T P+H A + + ++VL G ++ + G P+ LA H RDV L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH-RDVARYL 130
>pdb|3MA9|A Chain A, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|A Chain A, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 217
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 68 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 107
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 156 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 195
>pdb|2CMR|A Chain A, Crystal Structure Of The Hiv-1 Neutralizing Antibody D5
Fab Bound To The Gp41 Inner-Core Mimetic 5-Helix
Length = 226
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 68 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 107
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 156 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 195
>pdb|2XRA|A Chain A, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 228
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 68 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 107
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD 82
IE+S+N Q+KN++ +LE + + + L ++ + L+ A++
Sbjct: 156 IEESQNQQEKNEQELLEGS--SGGQLLSGIVQQQNNLLRAIE 195
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNK--RNILEAAE 60
+D++ + E+MQ RDG G + ++ V+ I+ N + + + E +E
Sbjct: 47 EDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYN--VIRIQKVVNKKLRERFCHRQKEVSE 104
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S ++A+ G+ H Y + AE N SK+ + + +
Sbjct: 105 ENHNHHNERMLFHGSPFINAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 161
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTTID 164
KD R+CY H ++ + G Q +TI
Sbjct: 162 GGGTGCPTHKD------RSCYICHRQMLFCRVTLGKSFLQFSTIK 200
>pdb|4B5O|A Chain A, Crystal Structure Of Human Alpha Tubulin Acetyltransferase
Catalytic Domain
Length = 200
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSM 262
H H R++ +L V+PH L+ S + + + HY L ET P NN +
Sbjct: 137 HGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNK-HYNL-ETTVPQVNNFVI 189
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNK--RNILEAAE 60
+D++ + E+MQ RDG G + ++ V+ I+ N + + + E +E
Sbjct: 11 EDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYN--VIRIQKVVNKKLRERFCHRQKEVSE 68
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S ++A+ G+ H Y + AE N SK+ + + +
Sbjct: 69 ENHNHHNERMLFHGSPFINAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 125
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
KD R+CY H ++ + G
Sbjct: 126 GGGTGCPTHKD------RSCYICHRQMLFCRVTLG 154
>pdb|4B5P|A Chain A, Crystal Structure Of Human Alpha Tubulin Acetyltransferase
Catalytic Domain Q58a Variant
pdb|4B5P|B Chain B, Crystal Structure Of Human Alpha Tubulin Acetyltransferase
Catalytic Domain Q58a Variant
Length = 200
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSM 262
H H R++ +L V+PH L+ S + + + HY L ET P NN +
Sbjct: 137 HGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNK-HYNL-ETTVPQVNNFVI 189
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNK--RNILEAAE 60
+D++ + E+MQ RDG G + ++ V+ I+ N + + + E +E
Sbjct: 11 EDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYN--VIRIQKVVNKKLRERFCHRQKEVSE 68
Query: 61 HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
N + E +L H S ++A+ G+ H Y + AE N SK+ + + +
Sbjct: 69 ENHNHHNERMLFHGSPFINAIIHKGFDERH--AYIGGMFGAGIYFAE-NSSKSNQYVYGI 125
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTTID 164
KD R+CY H ++ + G Q +TI
Sbjct: 126 GGGTGCPTHKD------RSCYICHRQMLFCRVTLGKSFLQFSTIK 164
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-------------GLTPLHLAASHSHS 211
G + LH A + + +CV +L+ G +V+A+ G G PL LAA +
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAAC-TKQ 153
Query: 212 RDVLMILLSHPNVDPHILSTSNE 234
DV+ LL +P+ + +T ++
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQ 176
>pdb|2YBY|A Chain A, Structure Of Domains 6 And 7 Of The Mouse Complement
Regulator Factor H
Length = 124
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTP 168
DS + V G S L CYNG++ +Q G DT T +GW+P
Sbjct: 78 DSAYWEKVYVQGQS-LKVQCYNGYS------LQNGQDTMTCTENGWSP 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,209,457
Number of Sequences: 62578
Number of extensions: 340129
Number of successful extensions: 1435
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 365
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)