RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17862
(265 letters)
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 148 bits (376), Expect = 6e-45
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 15/164 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
++ + LD+ ++ D G+SPLH AC S +E L
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-------------GRSAVVEML 58
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
+ + ++ +++ +PLH A +GH +IV+ L+Q+ AD G PLH AC W
Sbjct: 59 IMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ L+ G V+ G P+ A + +
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKM 160
Score = 132 bits (335), Expect = 1e-38
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
+ + C ++ + LD ++ D G+SPLH AC
Sbjct: 2 SPEFMDDIFTQCRE-------------GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR 48
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
G + +VE+LI GA TPLH A + + V LL Y D+NA G P
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108
Query: 202 LHLAASHSHSRDVLMILLSH 221
LH A V L+++
Sbjct: 109 LHYACFWGQ-DQVAEDLVAN 127
Score = 114 bits (287), Expect = 2e-31
Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N D + + L A S +E L+ + ++ +++ +PLH A + +
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGH-----RD 86
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ LL + ++AV++ G PLH AC+ G + E L+ GA
Sbjct: 87 IVQK--------LLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR 212
G P+ A G ++N P +R
Sbjct: 138 GEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGTTR 179
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 143 bits (364), Expect = 4e-43
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + L+ L LV+ D+ G++PL A + +T+ L
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-------------GEIETVRFL 55
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L+ + + K+ S L A G+ +IV LL++ D +G TPL A + N+
Sbjct: 56 LEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+CV LL G D+ + + G TP+ LA + + R V ++ +H
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157
Score = 127 bits (322), Expect = 8e-37
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
+H+ + L+ L LV+ D+ G++PL A G
Sbjct: 2 DSLSIHQLAAQ-------------GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE 48
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
V L++WGAD + + L A T+ V +LL VD+N G TPL
Sbjct: 49 IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108
Query: 205 AASHSHSRDVLMILLSH 221
A +H + LL+
Sbjct: 109 AVRGNHV-KCVEALLAR 124
Score = 120 bits (304), Expect = 3e-34
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 43 DSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
+ N D+ L A+ + +T+ LL+ + + K+ S L A
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG----- 80
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
+ D + LL+ D ++ D +G +PL A H VE L+ GAD
Sbjct: 81 ------YTD--IVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
G+TP+ A + V+ N+ + + P
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 29.7 bits (68), Expect = 0.58
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
G +H A+ D L L
Sbjct: 1 GDSLSIHQLAAQGE-LDQLKEHLRK 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 144 bits (366), Expect = 4e-42
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 25/196 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
N + + L EA ++ LL H + V+ V D ++PL AC +
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 96 -----DKNKRK-----ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
I EAA + + +L+ +D +PL+ AC N
Sbjct: 145 LQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQR 203
Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
V+ L++ GAD + +PLH+ + + E +L+++G D A+ G P+ L
Sbjct: 204 ACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
Query: 206 ASHSHSRDVLMILLSH 221
S + L
Sbjct: 263 PPESPLAQLF--LERE 276
Score = 137 bits (348), Expect = 2e-39
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDK-----DGYSPLHRACY------------NDKNKR 100
+ H+ L+ S + ++D DG P + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSH-MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 101 KIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
+ EAA H +L L+ V+ + D SPLH AC GH + V++L++ GA
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
T D TPL +AC + +CV +LL +G V +++ +P+H AA H + + L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGH-VECVNSLI 177
Query: 220 SH 221
++
Sbjct: 178 AY 179
Score = 102 bits (257), Expect = 4e-26
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 49 DKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE 107
+ + + + EAA + + +L+ + +D +PL+ AC N
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQ----------- 201
Query: 108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT 167
++ LL+ + V+ K SPLH + LL+ +GADTQ +G
Sbjct: 202 QRA--CVKKLLESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Query: 168 PLHSACKWNNTECVIVLLNYGVDVNA 193
P+ + + L G +
Sbjct: 258 PVELVPP-ESPLAQLFLEREGASLPK 282
Score = 39.8 bits (94), Expect = 5e-04
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 11/58 (18%)
Query: 172 ACKWNNTECVIVLLNYGVDVNAQTNG-----GLTPLHLAASHSHSRDVLMILLSHPNV 224
++ L+ G + + G P LLS+P +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------RLLSNPLM 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 140 bits (356), Expect = 4e-42
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + L ++ ++ ++ D++G++PL A + +E L
Sbjct: 10 LAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAH-------------GQIAVVEFL 55
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L + + K S L AC G+ +IV++L+ G D + +G TPL A N+
Sbjct: 56 LQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+CV +LL G D +T+ G + LA + + R V ++ SH
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLAVALGY-RSVQQVIESH 157
Score = 114 bits (288), Expect = 7e-32
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N D+ L AA H +E LL + + + K S L AC
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG-------- 80
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ D ++ LLD V+ D +G +PL A + H V++L++ GAD T
Sbjct: 81 ---YTD--IVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
G+ + A V+ ++ + +
Sbjct: 135 GYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 105 bits (264), Expect = 3e-28
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
+H+ G + I+ T +G+TPL A V LL G D
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G + L LA S + D++ +LL
Sbjct: 62 PQLLGKGRESALSLACSKGY-TDIVKMLLDC 91
Score = 71.7 bits (177), Expect = 1e-15
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
K + + L A + ++ LLD V+ D +G +PL A +
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHG--------- 112
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
N K ++ LL+ + GY+ + A G+ ++ +++ + +
Sbjct: 113 ----NHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 142 bits (361), Expect = 6e-42
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 23/197 (11%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
+ +NKR+ L AAE L+ + +D +D +PL A N
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 96 -----DKNKRK------ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
+ + + AA+ + ++ LL V+ D G++P+ A H
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
++V+LL+ G+D + LH A + +LL D++A G +PLH+
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 205 AASHSHSRDVLMILLSH 221
AA + D +++ LS
Sbjct: 184 AARENR-YDCVVLFLSR 199
Score = 138 bits (351), Expect = 2e-40
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+P+D L AA+ + ++ LL + V+ D G++P+ A
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY--------- 121
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
++ LL S ++ D + LH A ++G +I E+L+ D I
Sbjct: 122 ----KHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G +PLH A + N +CV++ L+ DV + G TPL A+ +S + +
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ-VWSALQMSKA 232
Score = 124 bits (313), Expect = 9e-35
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
++ SPLH A L+ + +D +D +PL
Sbjct: 4 FKMEHQNKRSPLHAAAEA-------------GHVDICHMLVQAGAN-IDTCSEDQRTPLM 49
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTN 196
A N H V+ LI+ GA +G T LH A K + E V LL+ G +DVN Q +
Sbjct: 50 EAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
GG TP+ A + H D++ +LLS
Sbjct: 110 GGWTPMIWATEYKH-VDLVKLLLSK 133
Score = 70.1 bits (173), Expect = 1e-14
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +D + L AA E LL + AV+ G SPLH A
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARE--------- 187
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
N + L DS V +K+G +PL A N + + D+
Sbjct: 188 ----NRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236
Score = 69.7 bits (172), Expect = 2e-14
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL 215
+ + + +PLH+A + + + +L+ G +++ + TPL AA ++H + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH-LEAV 60
Query: 216 MILLSH 221
L+
Sbjct: 61 KYLIKA 66
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 142 bits (362), Expect = 8e-42
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
EAA H +L L+ V+ + D SPLH AC ++
Sbjct: 9 EAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLG-------------GHLSCVKI 54
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
LL + V+ V D ++PL AC +G + V LL+Q GA Q + D +P+H A +
Sbjct: 55 LLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 112
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ ECV L+ YG +++ + + TPL+LA + R + LL
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ-RACVKKLLES 156
Score = 137 bits (348), Expect = 9e-40
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 19/177 (10%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N + + L EA ++ LL H + V+ V D ++PL AC +
Sbjct: 30 NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVS--------- 79
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ LL ++ V + D SP+H A GH V LI +G +
Sbjct: 80 ----GSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH 133
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
TPL+ AC+ CV LL G DVN Q G +PLH A + ++ +L+
Sbjct: 134 LGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTAS-EELACLLMDF 188
Score = 131 bits (331), Expect = 3e-37
Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 24/178 (13%)
Query: 49 DKNKRN-----ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
+ I EAA + + +L+ + +D +PL+ AC N
Sbjct: 94 SVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQ------- 145
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
++ LL+ + V+ K SPLH + LL+ +GADTQ
Sbjct: 146 ----QRA--CVKKLLESGAD-VNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+G P+ + + L + L H + ++L
Sbjct: 198 EGKRPVELVPP--ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQH-HKITKLVLPE 252
Score = 127 bits (323), Expect = 5e-36
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
+SP+H EAA H +L L+ V+ + D SPLH AC G
Sbjct: 2 SDWSPMH-------------EAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGG 47
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
H + V++L++ GA T D TPL +AC + +CV +LL +G V +++ +P+H
Sbjct: 48 HLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIH 106
Query: 204 LAASHSHSRDVLMILLSH 221
AA H + + L+++
Sbjct: 107 EAARRGH-VECVNSLIAY 123
Score = 73.6 bits (182), Expect = 1e-15
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ W+P+H A + + L++ G VN T ++PLH A H + ILL H
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH-LSCVKILLKH 58
Score = 62.8 bits (154), Expect = 6e-12
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 18/110 (16%)
Query: 48 QDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAA 106
Q K + + L A + L+D + A + +G P+
Sbjct: 162 QGKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE----------- 209
Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
S + L+ + + H I +L++
Sbjct: 210 ----SPLAQLFLEREGP-PSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 147 bits (373), Expect = 1e-41
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
N L AA +T+ ALL+ +++ + K G++PLH A
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 96 ----------DKNKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
KN L A HN+ ++ LL + + +GY+PLH A
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQ 224
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
+ L+Q+G ++ G TPLH A + + E V +LL+ + N GLTPLHL
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Query: 205 AASHSHSRDVLMILLSH 221
A H V +L+ H
Sbjct: 285 VAQEGH-VPVADVLIKH 300
Score = 146 bits (371), Expect = 2e-41
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N + L AA ++ + LL + + V+A KD +PLH A
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARI--------- 90
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ ++ LL+ ++ + G++PLH A GH V L++ A T
Sbjct: 91 ----GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G+TPLH A K+ +LL NA GLTPLH+A H++ D++ +LL
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN-LDIVKLLLPR 201
Score = 142 bits (361), Expect = 5e-40
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N + K+ + L AA + ++ LL++++ + G++PLH A
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAARE--------- 123
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+T+ ALL+ +++ + K G++PLH A G + ELL++ A +
Sbjct: 124 ----GHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G TPLH A NN + V +LL G ++ G TPLH+AA + +V LL +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQY 234
Score = 140 bits (356), Expect = 3e-39
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 25/199 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
+ N L AA+ N + +LL + + +A G +PLH A
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 96 ----------DKNKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
+K+ L A+ + L+ VDA + GY+PLH A + G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGN 323
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
+V+ L+Q AD T G++PLH A + +T+ V +LL G N ++ G TPL +
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 205 AASHSHSR--DVLMILLSH 221
A + DVL ++
Sbjct: 384 AKRLGYISVTDVLKVVTDE 402
Score = 137 bits (348), Expect = 4e-38
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N KN L A HN+ ++ LL + + +GY+PLH A
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQ--------- 222
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
N + +LL + +A G +PLH A GHA +V LL+ A+
Sbjct: 223 ----NQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G TPLH + + VL+ +GV V+A T G TPLH+A+ + + ++ LL H
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN-IKLVKFLLQH 333
Score = 131 bits (331), Expect = 1e-35
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
+ G +PLH A + ++ LL ++ + + +PLH
Sbjct: 7 GGGGGESGLTPLHVASFM-------------GHLPIVKNLLQRGAS-PNVSNVKVETPLH 52
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
A GH + + L+Q A D TPLH A + +T V +LL + N T
Sbjct: 53 MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 198 GLTPLHLAASHSHSRDVLMILLSH 221
G TPLH+AA H + ++ LL
Sbjct: 113 GHTPLHIAAREGH-VETVLALLEK 135
Score = 114 bits (288), Expect = 1e-29
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +K+ L A+ + L+ H VDA + GY+PLH A +
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHY--------- 321
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ K ++ LL + V+A K GYSPLH+A GH +IV LL++ GA + + D
Sbjct: 322 ----GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Query: 165 GWTPLHSACKWNNTECV---IVLLNYGVDVNAQTNGGLTPLHLAASH-SHSRD 213
G TPL A + V+ + V ++ S D
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSED 429
Score = 77.5 bits (192), Expect = 2e-16
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
G G TPLH A + V LL G N TPLH+AA H+ +V
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-EV 62
Query: 215 LMILLSH 221
LL +
Sbjct: 63 AKYLLQN 69
Score = 56.0 bits (136), Expect = 3e-09
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 43/147 (29%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ + L A+ + + K ++ LL H + V+A K GYSPLH +
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLH-------------Q 350
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV---------------- 148
AA+ + + LL ++ + V DG +PL A G+ ++
Sbjct: 351 AAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409
Query: 149 -----------ELLIQWGADTQKTTID 164
+ ++ D + I
Sbjct: 410 DKHRMSFPETVDEILDVSEDEGEELIS 436
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
G+ GLTPLH+A+ H ++ LL P++ + E+ +A R+G
Sbjct: 4 GISGGGGGESGLTPLHVASFMGH-LPIVKNLLQR-GASPNVSNVKVETPLHMAARAG 58
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 139 bits (352), Expect = 9e-41
Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N D+ L AA ++ S + LL+ + + D G +PLH A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAA------------ 65
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ + L+ +T +DA DG +PL A ++E LI AD
Sbjct: 66 -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G + LH A NN + +VLL G + + Q N TPL LAA + +LL H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-YETAKVLLDH 180
Score = 138 bits (351), Expect = 1e-40
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 16/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L A + + L+ + +T +DA DG +PL A
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA------------ 99
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
A LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 100 -ARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
TPL A + + E VLL++ + + + P +A H D++ +L +
Sbjct: 158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-HDIVRLLDEY 213
Score = 122 bits (310), Expect = 2e-34
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)
Query: 68 EALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA 127
+ ++L + D+ G + LH AA ++ S + LL+ + +
Sbjct: 8 SDFIYQGASLHNQTDRTGETALHL-------------AARYSRSDAAKRLLEASAD-ANI 53
Query: 128 VDKDGYSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLN 186
D G +PLH A + ++LI+ A D DG TPL A + + L+N
Sbjct: 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Query: 187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
DVNA + G + LH AA+ ++ D ++LL +
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLKN 147
Score = 83.2 bits (207), Expect = 2e-19
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 143 GHANIVELLIQWGADTQ-KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
++ I GA +T G T LH A +++ ++ LL D N Q N G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 202 LHLAASHSHSRDVLMILLSH 221
LH A S + V IL+ +
Sbjct: 62 LHAAVSADA-QGVFQILIRN 80
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 138 bits (351), Expect = 3e-40
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL---VDAVDKDGYSPLHRACYNDKNKRK 101
D++ + A EH L ALLD + ++A + DG + LH A
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT------ 126
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQK 160
+T++ LL+ + +DAVD K G SPL A N ++V+LL+Q GA+
Sbjct: 127 -------ECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Query: 161 TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
G + LHSA V L+ G D + + TPL +A S D+L +
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV-IDILRGKAT 237
Query: 221 H 221
Sbjct: 238 R 238
Score = 127 bits (321), Expect = 7e-36
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 21/152 (13%)
Query: 77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL---VDAVDKDGY 133
+ D+DG +PLH A + + L++L +D +
Sbjct: 1 MATRADEDGDTPLHIAVVQ-------------GNLPAVHRLVNLFQQGGRELDIYNNLRQ 47
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG----V 189
+PLH A ++V LL+ GA G T H AC+ + C+ LL+ +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
D+ A+ GLT LH+A + ++ + +LL
Sbjct: 108 DLEARNYDGLTALHVAVNTEC-QETVQLLLER 138
Score = 66.7 bits (164), Expect = 2e-13
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A E+N ++ LL H + V+A G S LH A + L
Sbjct: 157 AVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR-------------GLLPLVRTL 202
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
+ + + +PL A +I+ A
Sbjct: 203 VRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 138 bits (350), Expect = 3e-40
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
D + +A ++ + L++ V DK+ + LH A N
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAIN--------- 52
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
N ++ + + VD + D +PLH A GH ++V L+++GAD
Sbjct: 53 ----NRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+G + +H A ++ +T V L+ G DV+ G+TPL AA +HS D +LL+
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Score = 126 bits (320), Expect = 1e-35
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + L+ + + +D +G S +H A + + L
Sbjct: 83 ATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQF-------------GHTSIVAYL 128
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGH-ANIVELLIQWGAD-TQKTTIDGWTPLHSACKW 175
+ VD +D++G +PL A Y H + LL+ + T LH A
Sbjct: 129 IAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
NT + +LL G +V+AQ G + L LA + ++ L
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN-VWMINHLQEA 232
Score = 125 bits (317), Expect = 2e-35
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
+ +D + +A + L++ V DK+ + LH
Sbjct: 2 MTHIDDYSTWDIVKATQY-------------GIYERCRELVEAGYD-VRQPDKENVTLLH 47
Query: 138 RACYNGHANIVELLIQWGADT-QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
A N ++V+ I GA Q TPLH A + + V+ L+ YG D +
Sbjct: 48 WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107
Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
G + +HLAA H ++ L++
Sbjct: 108 EGCSCIHLAAQFGH-TSIVAYLIAK 131
Score = 99.8 bits (250), Expect = 2e-25
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ D + + AA+ + + L+ VD +D++G +PL A Y
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRT-------- 153
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDK-DGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
+ LL + + V+ DK + LH A G+ ++ LL++ GA+ I
Sbjct: 154 ----HSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
G + L A + N + L
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQAKGY 238
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 138 bits (351), Expect = 3e-40
Identities = 46/185 (24%), Positives = 69/185 (37%), Gaps = 21/185 (11%)
Query: 57 EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN-------------------DK 97
E + + + ++L + D+ G + LH A D
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 88
Query: 98 NKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
R L A + + L+ +T +DA DG +PL A ++E LI A
Sbjct: 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLM 216
D G + LH A NN + +VLL G + + Q N TPL LAA +
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-YETAK 207
Query: 217 ILLSH 221
+LL H
Sbjct: 208 VLLDH 212
Score = 136 bits (345), Expect = 3e-39
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 16/177 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD R L A + + L+ + +T +DA DG +PL A
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--------- 134
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
LE L++ + V+AVD G S LH A + + +L++ GA+
Sbjct: 135 ----AVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
TPL A + + E VLL++ + + + P +A H D++ +L
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-HDIVRLLDLE 245
Score = 131 bits (332), Expect = 2e-37
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
V+ DG++PL A + E + + + ++L + D+ G + LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTN 196
A ++ + L++ AD G TPLH+A + +L+ D++A+ +
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
G TPL LAA + +L L++
Sbjct: 123 DGTTPLILAARLAV-EGMLEDLINS 146
Score = 36.7 bits (86), Expect = 0.004
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
+DVN + G TPL +A+ +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPA 37
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 134 bits (339), Expect = 1e-39
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 56 LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
AA D + + LL + DA+++ G + L +
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST--------------AIAL 52
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
LL ++ + D G SP+H A G + +++L++ GAD G P+H A +
Sbjct: 53 ELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+T V L D++ + GLTPL LA +D++ IL H
Sbjct: 112 GHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGA-QDLVDILQGH 155
Score = 122 bits (308), Expect = 6e-35
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
AA D + + LL + DA+++ G + L + G I L++ GA
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQD 65
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHP 222
G +P+H A + + + VL+ +G DVN G P+HLA H V+ L +
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH-TAVVSFLAAES 124
Query: 223 NVD 225
++
Sbjct: 125 DLH 127
Score = 95.2 bits (238), Expect = 1e-24
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
L A G V LL + G T L + +T + LL G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
N Q G +P+H AA D L +L+ H
Sbjct: 61 PNVQDTSGTSPVHDAARTGF-LDTLKVLVEH 90
Score = 64.0 bits (157), Expect = 6e-13
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N QD + + + +AA TL+ L++H + V+ D G P+H A ++
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQE--GHTAVVS 118
Query: 105 A-AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
A +D + D G +PL A G ++V++L
Sbjct: 119 FLAAESD--------------LHRRDARGLTPLELALQRGAQDLVDILQ 153
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 135 bits (343), Expect = 3e-39
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 22/183 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N Q+ ++ L A N + EALL + D G +PLH AC
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQ--------- 88
Query: 105 AAEHNDSKTLEALLD-----LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-T 158
++ L +++ A + +G++ LH A +G+ IVELL+ GAD
Sbjct: 89 ----GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
+ +G T LH A N + V +LL G DVN T G +P L + L
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS-TRIQQQL 203
Query: 219 LSH 221
Sbjct: 204 GQL 206
Score = 125 bits (316), Expect = 3e-35
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 17/148 (11%)
Query: 80 AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
+ +DG S LH A ++ K +E + D ++ + +PLH A
Sbjct: 3 QLTEDGDSFLHLAIIHE-EKALTMEVIR---------QVKGDLAFLNFQNNLQQTPLHLA 52
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD------VNA 193
I E L+ G D + G TPLH AC+ V VL + A
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 194 QTNGGLTPLHLAASHSHSRDVLMILLSH 221
G T LHLA+ H + ++ +L+S
Sbjct: 113 TNYNGHTCLHLASIHGY-LGIVELLVSL 139
Score = 123 bits (310), Expect = 2e-34
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 28/186 (15%)
Query: 48 QDKNKRNIL-EAAEHNDSKT----LEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
++ + L A H + + + + ++ + +PLH
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA-FLNFQNNLQQTPLHL----------- 51
Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
A N + EALL + D G +PLH AC G V +L Q +
Sbjct: 52 --AVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 163 I------DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-GLTPLHLAASHSHSRDVL 215
I +G T LH A V +L++ G DVNAQ G T LHLA + D++
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN-PDLV 167
Query: 216 MILLSH 221
+LL
Sbjct: 168 SLLLKC 173
Score = 113 bits (285), Expect = 1e-30
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 21/172 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDH-----DSTLVDAVDKDGYSPLHRACYNDKNK 99
+D L A E ++ L +++ A + +G++ LH A
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA------- 124
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDK-DGYSPLHRACYNGHANIVELLIQWGADT 158
+ H +E L+ L + V+A + +G + LH A + ++V LL++ GAD
Sbjct: 125 ------SIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
+ T G++P +T L ++
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229
Score = 62.6 bits (153), Expect = 7e-12
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 159 QKTTIDGWTPLHSACKWNNT----ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
Q+ T DG + LH A E + + +N Q N TPLHLA + ++
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP-EI 60
Query: 215 LMILLSH 221
LL
Sbjct: 61 AEALLGA 67
Score = 42.9 bits (102), Expect = 4e-05
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 15/92 (16%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + + + LL + V+ V GYSP ++ + L
Sbjct: 158 AVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQ-------------LTWGRPSTRIQQQL 203
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
L + + + E
Sbjct: 204 GQLTLE-NLQMLPESEDEESYDTESEFTEFTE 234
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 135 bits (342), Expect = 2e-38
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 16/190 (8%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
N D L AA E L+ + V AV+ +G +PL A
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 96 ----DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
+ + E + L+ K G + LH A G+ +++LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 152 IQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
IQ D DGWTPLH+A W E +L+ D+ A G T +A
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL- 277
Query: 212 RDVLMILLSH 221
+ +
Sbjct: 278 GYLEELQKKQ 287
Score = 124 bits (315), Expect = 2e-34
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 48 QDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAA 106
D ++ + S+ LE + DG L A
Sbjct: 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLA--------------AC 48
Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
D++ + LL+ + ++ + DG + LH+AC + + ++V+ L++ GA+ + +GW
Sbjct: 49 SSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
PLH+A + L++ G V A + G TPL +A + ++L ++ VD
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM-EELLQNEVNRQGVD 165
Score = 116 bits (293), Expect = 2e-31
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
+ + L A D++ + LL+ + ++ + DG + LH+AC +
Sbjct: 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACID---------- 83
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
++ ++ L++ + ++ D +G+ PLH A G+ +I E LI GA +G
Sbjct: 84 ---DNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
Query: 166 WTPLHSACKWNNTECVIVLLNY-GVDVNA--------------------------QTNGG 198
TPL A + E + +N GVD+ A G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
T LH+AA+ + +VL +L+
Sbjct: 200 GTALHVAAAKGY-TEVLKLLIQA 221
Score = 105 bits (264), Expect = 4e-27
Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 16/144 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
+ D + LE + DG +
Sbjct: 1 MKMADAKQKRNEQLKRWI-------------GSETDLEPPVVKRKK-TKVKFDDG-AVFL 45
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
AC +G V L++ GAD +DG T LH AC +N + V L+ G ++N N
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 198 GLTPLHLAASHSHSRDVLMILLSH 221
G PLH AAS + D+ L+S
Sbjct: 106 GWIPLHAAASCGY-LDIAEYLISQ 128
Score = 94.5 bits (236), Expect = 4e-23
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 16/153 (10%)
Query: 46 NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N Q + + E + + L K G + LH A
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAK--------- 209
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
++ L+ L+ V+ D DG++PLH A + G +L++ D +
Sbjct: 210 ----GYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
G T A + + + + +
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 132 bits (334), Expect = 2e-38
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 40 GIEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN 98
++ RN +D R L A ++ L+++ ++ D +G + L A
Sbjct: 23 NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWA------ 75
Query: 99 KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
++N E LL S V+ D G +PL + G++ + L++ GA+
Sbjct: 76 -------VKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
++G TPL A K+ +E V LL G D++A+ GLT A ++V+ I
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR-QEVIKIF 186
Query: 219 LSH 221
Sbjct: 187 TEV 189
Score = 113 bits (285), Expect = 3e-31
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
+DK+G E + ++ L+ L + D +PL AC
Sbjct: 4 MDKNGEIVEK-------------IKDEKSINQNLDF-------LRNYRDSYNRTPLMVAC 43
Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
G N ++ L++ + I+G T L A K N LL+ G +VN + G T
Sbjct: 44 MLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103
Query: 201 PLHLAASHSHSRDVLMILLSH 221
PL + + ++ LL H
Sbjct: 104 PLMWSIIFGY-SEMSYFLLEH 123
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 130 bits (331), Expect = 3e-38
Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 56 LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
LEAA+ D +T++ L S ++ +PLH AA +N +E
Sbjct: 13 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-------------FAAGYNRVSVVE 59
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
LL + V A DK G PLH AC GH + ELL++ GA + +TPLH A
Sbjct: 60 YLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
E +LL +G D + G TPL L D+ +L
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVK--DGDTDIQDLLRGD 162
Score = 124 bits (315), Expect = 5e-36
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
+ + L EAA+ D +T++ L + S ++ +PLH A
Sbjct: 4 GNSEADRQLL-------------EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA 50
Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
++VE L+Q GAD G PLH+AC + + E +L+ +G VN T
Sbjct: 51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 201 PLHLAASHSHSRDVLMILLSH 221
PLH AA+ ++ +LL H
Sbjct: 111 PLHEAAAKGK-YEICKLLLQH 130
Score = 62.0 bits (152), Expect = 3e-12
Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 31/123 (25%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN-------------------DKN 98
AA +N +E LL H + V A DK G PLH AC D
Sbjct: 49 AAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW 107
Query: 99 KRKIL-EAAEHNDSKTLEALL----DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
K L EAA + + LL D ++DG +PL +G +I +LL
Sbjct: 108 KFTPLHEAAAKGKYEICKLLLQHGAD-----PTKKNRDGNTPLDLVK-DGDTDIQDLLRG 161
Query: 154 WGA 156
A
Sbjct: 162 DAA 164
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 130 bits (331), Expect = 3e-38
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA + L+ + + V+A D G++PLH A +N + +E L
Sbjct: 21 AARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFN-------------GHLEIVEVL 66
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L + V+AVD G +PL A GH IVE+L++ GAD ++G TPLH A + +
Sbjct: 67 LKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
E V VLL G DVNAQ G T ++ + + D+ IL
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKL 168
Score = 115 bits (290), Expect = 4e-32
Identities = 50/140 (35%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
D L EAA + L+ + V+A D G++PLH A +
Sbjct: 11 GSDLGKKLL-------------EAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAF 56
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
NGH IVE+L++ GAD G TPL A + + E V VLL G DVNA G TP
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 202 LHLAASHSHSRDVLMILLSH 221
LHLAA H +++ +LL +
Sbjct: 117 LHLAAMFGH-LEIVEVLLKN 135
Score = 27.7 bits (63), Expect = 2.5
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 188 GVDVN-AQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G + + L AA D + IL+++
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGR-DDEVRILMAN 36
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 129 bits (327), Expect = 4e-38
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
+ G + LH A D ++E LL S + D G++PLH AC
Sbjct: 7 NHRGETLLHIASIK-------------GDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACN 52
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
+GH +VELL+Q A T +PLH A K + + V +LL+YG NA GL P
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
Query: 202 LHLAASHSHSRDVLMILLSHPNVD 225
+ S + +L++ + +
Sbjct: 113 VDYTDDESM-KSLLLLPEKNESSS 135
Score = 74.0 bits (183), Expect = 7e-17
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
G D T G T LH A + V LL G D N + + G TPLH A +H H V
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH-LKV 58
Query: 215 LMILLSH 221
+ +LL H
Sbjct: 59 VELLLQH 65
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 131 bits (331), Expect = 6e-38
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 48 QDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYN----------- 95
+ +LEAA D+K E L D VD VD +G +PL+ A +N
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 96 ---DKNKRK------ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
D N + L A ++ L +L + ++ ++ G + L A GH +
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 147 IVELLIQWG-ADTQKTTIDGWTPLHSACKWNN-----TECVIVLLNYGVDVNAQTNGGLT 200
V+LL++ G D G+T L A + V +L+ G D + + N G T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Query: 201 PLHLAASHSHSRDVLMILLSH 221
+ A + ++ IL +
Sbjct: 181 AMDYANQKGY-TEISKILAQY 200
Score = 114 bits (287), Expect = 2e-31
Identities = 37/145 (25%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
+ + L A + + K E L D VD VD +G +PL+ A +
Sbjct: 3 TYEVGALLEAA-------------NQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVH 48
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTNGGLT 200
N I + LI GAD +P A TE + +L + D+N G
Sbjct: 49 NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108
Query: 201 PLHLAASHSHSRDVLMILLSHPNVD 225
L AA H D + +LL D
Sbjct: 109 ALIPAAEKGH-IDNVKLLLEDGRED 132
Score = 97.1 bits (243), Expect = 7e-25
Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N Q+ + A ++ L +L H + ++ ++ G + L A ++
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH-----ID 120
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC-----YNGHANIVELLIQWGADTQ 159
+ LL+ +D + GY+ L A + +IV+LL++ GAD
Sbjct: 121 NVKL--------LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNY 187
G T + A + TE +L Y
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQY 200
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 132 bits (335), Expect = 1e-37
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 16/177 (9%)
Query: 35 DDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY 94
D + P + +++ + +++ D ++A + DG++PLH A
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVA-- 165
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQ 153
H D++ + L D + ++ + G +PLH A A+++ELL++
Sbjct: 166 -----------VIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
GAD G TPL SA N +L +G L+P + S S
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270
Score = 121 bits (307), Expect = 2e-33
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 32/193 (16%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
++ L A H L+ LL +D + G + LH A
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL------- 55
Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
++ T+E L + V ++ G++ LH AC +L+Q +
Sbjct: 56 ------GEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108
Query: 163 IDGWTP--------------LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
D + + E ++ + + A+ G TPLH+A H
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168
Query: 209 SHSRDVLMILLSH 221
+++ +L
Sbjct: 169 KD-AEMVRLLRDA 180
Score = 119 bits (302), Expect = 1e-32
Identities = 33/160 (20%), Positives = 47/160 (29%), Gaps = 28/160 (17%)
Query: 77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYS 134
+ V +DG + LH A H L+ LL +D + G +
Sbjct: 1 VFGYVTEDGDTALHLA-------------VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQT 47
Query: 135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
LH A G A+ VE L GA G T LH AC+ C VLL
Sbjct: 48 ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
Query: 195 TNGGL-------------TPLHLAASHSHSRDVLMILLSH 221
+ P + + + +
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 130 bits (328), Expect = 3e-37
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 15/166 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
Q ++ N L EAA+ + L LD+ V+ +DK G + L+ AC+
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHG--------- 116
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+E L + ++ +K G + LH A + G+A+IV+LL+ GA T I+
Sbjct: 117 ----GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
A + + H
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 123 bits (310), Expect = 1e-34
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + +T + L + + + + + K + ++ +
Sbjct: 19 ALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTS--KGRTGLIPSN----------- 64
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
V + +PLH A G+ + + + G T L+ AC +
Sbjct: 65 ------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118
Query: 178 TECVIVLL-NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ V +L +++N Q G T LH AA + D++ +LL+
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY-ADIVQLLLAK 162
Score = 113 bits (286), Expect = 5e-31
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 20/144 (13%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
K G + RA Y + +T + L + + + + +
Sbjct: 9 VKPGQVKVFRALYT-------------FEPRTPDELYIEEGD-IIYITDMSDTNWWKGTS 54
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
G ++ + PLH A K N + L+ V VN G T
Sbjct: 55 KGRTGLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109
Query: 202 LHLAASHSHSRDVLMILLSHPNVD 225
L+ A H +D++ +L + PN++
Sbjct: 110 LYWACHGGH-KDIVEMLFTQPNIE 132
Score = 57.6 bits (140), Expect = 3e-10
Identities = 8/52 (15%), Positives = 11/52 (21%)
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
K G + A L D+ T+ T S
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57
Score = 29.9 bits (68), Expect = 0.70
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 192 NAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
G + A R + + ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDII 39
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 127 bits (323), Expect = 3e-37
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA D + L +LL ++ V+A + G + L + + L
Sbjct: 12 AAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNP--------------EIARRL 56
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L + D D+ G++ +H A G + ++ L+++ AD +G PLH A K +
Sbjct: 57 LLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 178 TECVIVLLNYG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
V L+ + +V + + G T LA + +V+ ++ ++
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR-NEVVSLMQAN 159
Score = 110 bits (277), Expect = 2e-30
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
+ + + L AA D + L +LL + V+A + G + L
Sbjct: 1 MAEPWGNELA-------------SAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK 46
Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
G+ I L+ GA+ G+ +H A + + + LL + DVN + N G
Sbjct: 47 L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 201 PLHLAASHSHSRDVLMILLSH 221
PLHLAA H V+ L+ H
Sbjct: 106 PLHLAAKEGH-LRVVEFLVKH 125
Score = 72.4 bits (179), Expect = 4e-16
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ +D+ ++ +AA TL+ LL+ + V+ D +G PLH A
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLA------------ 110
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
A+ + +E L+ ++ V + G + A G +V L+ GA
Sbjct: 111 -AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 133 bits (337), Expect = 3e-37
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 46 NPQDKNKRN-ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ K++ +LEAA + + L ALL + A D +PLH
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH-------------L 64
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
AA +N + ++ LL + V A DK G PLH AC GH + ELL++ GA +
Sbjct: 65 AAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+TPLH A N E +LL++G D G + + +A + R+ L
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL-RERLTYEFKG 179
Score = 132 bits (335), Expect = 7e-37
Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Query: 62 NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
K+ L D + + L A A N+ K + L L+
Sbjct: 2 EFGKSALDLADPSAK-AVLTGEYKKDELLEA------------ARSGNEEKLMALLTPLN 48
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
A D +PLH A IV+LL+Q GAD G PLH+AC + + E
Sbjct: 49 VN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT 241
+LL +G VNA TPLH AAS + +V +LLSH DP +++ +SA ++A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNR-VEVCSLLLSH-GADPTLVNCHGKSAVDMAP 165
Query: 242 RSG 244
Sbjct: 166 TPE 168
Score = 131 bits (331), Expect = 3e-36
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 18/171 (10%)
Query: 51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
++L+AA D ++ L + + + LH A + KRK
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK--------- 227
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
+ E LL + V+ +KD +PLH A H +++E+L + GA G T LH
Sbjct: 228 -QVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
A + + +LL+YG D + + G T + + + +LS
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN------EAVQQILSE 330
Score = 125 bits (316), Expect = 4e-34
Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 39/200 (19%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ D K L AA +N + ++ LL H + V A DK G PLH AC
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSY--------- 101
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
+ E LL + V+A+D ++PLH A + LL+ GAD
Sbjct: 102 ----GHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156
Query: 165 GWTPLHSACKWNNTECVIVLLNY---------------------GVDVNAQTNGGLTPLH 203
G + + A E + + Q T LH
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216
Query: 204 LAASHSH--SRDVLMILLSH 221
A + H + V +LL
Sbjct: 217 CAVASLHPKRKQVAELLLRK 236
Score = 107 bits (270), Expect = 2e-27
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 46 NPQDKNKRNIL-EAAE--HNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
Q ++ L A H K E LL + V+ +KD +PLH A
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVA--------- 254
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
AE + +E L + ++A+D G + LHRA GH LL+ +G+D
Sbjct: 255 ----AERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
++ G+T E V +L+ + L A+
Sbjct: 310 SLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDY--RLLEASKA 349
Score = 68.3 bits (168), Expect = 2e-13
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 23/133 (17%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N ++K+ L AAE + +E L H + ++A+D G + LHRA
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRA------------ 287
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
A +T LL S + G++ V+ ++ + + +D
Sbjct: 288 -ALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDVD 340
Query: 165 GWTPLHSACKWNN 177
L A K +
Sbjct: 341 Y--RLLEASKAGD 351
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 129 bits (327), Expect = 6e-37
Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 19/205 (9%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
+D++ R L + + LL + L D D G++P H AC
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV------- 82
Query: 103 LEAAEHNDSKTLEALLDLDS-TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
+ + +++L D ++ + G + LH A + + LI+ GA +
Sbjct: 83 ------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGV-DVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
PLH A + + + +L G VN Q G TPL A + H D ++L+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH-GDAAVLLVE 195
Query: 221 HPNVDPHILSTSNESAREIATRSGI 245
+ ++ A ++A +
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQV 220
Score = 128 bits (324), Expect = 2e-36
Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 18/172 (10%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A N+ ++ LL +L+ D+DG PLH + + L
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-------------QAHEITSFL 55
Query: 118 LD--LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ--WGADTQKTTIDGWTPLHSAC 173
L + L D D G++P H AC G+ +V+ L D K T G T LH A
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
E L+ G V + PLH AAS ++ +L
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS-LKLIELLCGLGKSA 166
Score = 93.7 bits (234), Expect = 2e-23
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N L A + + L+++ ++ V DK PLHRA
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASV--------- 150
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QWGADTQKTTI 163
K +E L L + V+ DK G++PL A GH + LL+ ++GA+
Sbjct: 151 ----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 164 DGWTPLHSACKWNNTECVI 182
G A + +
Sbjct: 207 KGAKAEDVALNEQVKKFFL 225
Score = 91.4 bits (228), Expect = 2e-22
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
PLH+AC V ELL + + DG PLH + + E LL+ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 191 VNAQ---TNGGLTPLHLAASHSHSRDVLMILLSH 221
VN + G TP H+A S + +V+ L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGN-LEVVKSLYDR 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 127 bits (322), Expect = 8e-37
Identities = 42/171 (24%), Positives = 57/171 (33%), Gaps = 27/171 (15%)
Query: 55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
L + S + D V + +P AA D + L
Sbjct: 18 YLIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWW-------------TAARKADEQAL 60
Query: 115 EALL---DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-TQKTTIDGWTPLH 170
LL D VDAVD++G + L G V LL + GAD + G T LH
Sbjct: 61 SQLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
A + E V L+ G D+ + GLT L LA +
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-TTPKGNPMQF 165
Score = 107 bits (270), Expect = 4e-29
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 80 AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
+G + S + + D V + +P A
Sbjct: 9 RTAGEGAMEYLIEWKD-------------GHSPSWVPSSYIA---AD-VVSEYETPWWTA 51
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGG 198
+ L++ D +G T L + +CV +L G D++ + GG
Sbjct: 52 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
LT LH+AA + +V+ L+
Sbjct: 111 LTALHMAAGYVRP-EVVEALVEL 132
Score = 102 bits (257), Expect = 3e-27
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA D + L LL+ VDAVD++G + L K + L
Sbjct: 51 AARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGL-------------GSDKCVRLL 95
Query: 118 LDL--DSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
+ D +D D + G + LH A +VE L++ GAD + G T L A +
Sbjct: 96 AEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Query: 175 WNNTECVIVLLNYGVDVNAQ 194
T + +G + +
Sbjct: 153 ILKTTPKGNPMQFGRRIGLE 172
Score = 59.8 bits (146), Expect = 3e-11
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
+G K ++ + DV ++ TP AA + L LL +
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKAD-EQALSQLLEDRD 68
Query: 224 VD 225
VD
Sbjct: 69 VD 70
Score = 26.7 bits (60), Expect = 6.2
Identities = 3/34 (8%), Positives = 7/34 (20%), Gaps = 1/34 (2%)
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ + G + HS +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHS-PSWVPSSYI 36
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 129 bits (328), Expect = 2e-36
Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 38/212 (17%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
+ KN AA K L+ L + V+ D G++ A
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 96 ----------DKNKRKILE-----------AAEHNDSKTLEALLDLDSTLVDAVDKDGYS 134
K K AAE + L+ LLD V+A D G +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 135 PLHRACYNGHAN----IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGV 189
L A + + I LL+ GAD G TPL A + + V LL +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
++N + G T L LA + + +L
Sbjct: 245 EINDTDSDGKTALLLAVELKL-KKIAELLCKR 275
Score = 120 bits (304), Expect = 6e-33
Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 28/218 (12%)
Query: 49 DKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKD-GYSPLHRACYNDKNKRKILEAA 106
++L +A ++ D ++ LL+ + V+ +++ G++PLH A
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQM----------- 49
Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
+ +E LL + K+G +P A G +++L + GAD + G+
Sbjct: 50 --SREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTN----------GGLTPLHLAASHSHSRDVLM 216
T A + + + L G +VN + GG T L AA H +VL
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLK 165
Query: 217 ILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE 254
ILL D + +A A S +
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203
Score = 107 bits (271), Expect = 3e-28
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 22/161 (13%)
Query: 46 NPQDKNKRNILE-----------AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY 94
N + K K + AAE + L+ LLD V+A D G + L A
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-Q 153
+ + + LLD + V+ + G +PL A H +V+ L+ Q
Sbjct: 192 S-SDDSDVEAITHL--------LLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
+ T DG T L A + + +L G +
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 124 bits (315), Expect = 5e-36
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 56 LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
LEAA + L+ + + D G SPLH A A++ T E
Sbjct: 7 LEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLA-------------AQYGHFSTTE 51
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
LL + DA K +PLH A GHANIVE+L++ GAD + T LH A +
Sbjct: 52 VLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
N+ E V +L+ YG DV+ Q+ T ++ + +
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145
Score = 114 bits (287), Expect = 7e-32
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
D L EAA + L+ + D G SPLH A G
Sbjct: 1 DLGKKLL-------------EAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYG 45
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
H + E+L++ G T TPLH A + V VLL +G DVNA+ +T LH
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
Query: 204 LAASHSHSRDVLMILLSH 221
A H+H ++V+ +L+ +
Sbjct: 106 WATEHNH-QEVVELLIKY 122
Score = 91.7 bits (229), Expect = 2e-23
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA++ T E LL + DA K +PLH A A + +E L
Sbjct: 41 AAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA-------------ASEGHANIVEVL 86
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L + V+A D + LH A + H +VELLI++GAD + T + N
Sbjct: 87 LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145
Query: 178 TECVIVL 184
+ +L
Sbjct: 146 EDLAEIL 152
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 122 bits (310), Expect = 1e-35
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
+ + + L A +T+ LL+ + +A+++ G P+
Sbjct: 5 IHMLGGSSDAGLATAAAR-------------GQVETVRQLLEAGAD-PNALNRFGRRPIQ 50
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWT-PLHSACKWNNTECVIVLLNYGVDVNAQTN 196
G A + ELL+ GA+ T P+H A + + ++VL G ++
Sbjct: 51 VMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
G P+ LA H RD+ L +
Sbjct: 110 WGRLPVDLAEEQGH-RDIARYLHAA 133
Score = 102 bits (256), Expect = 1e-27
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 22/149 (14%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
+ + L AA +T+ LL+ + +A+++ G P+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMG--------- 55
Query: 105 AAEHNDSKTLEALLDL--DSTLVDAVDKDGY-SPLHRACYNGHANIVELLIQWGADTQKT 161
E LL + + D P+H A G + + +L + GA
Sbjct: 56 ---SAQ--VAELLLLHGAE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVD 190
G P+ A + + + L D
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 72.1 bits (178), Expect = 4e-16
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
L +A E V LL G D NA G P+ + S V
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA--QV 59
Query: 215 LMILLSH 221
+LL H
Sbjct: 60 AELLLLH 66
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 127 bits (321), Expect = 2e-35
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 19/166 (11%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA D+K ++ LL D G + L+ A + + +T++
Sbjct: 69 AATLEDTKIVKILLFSGLD-DSQFDDKGNTALY-------------YAVDSGNMQTVKLF 114
Query: 118 LDLDSTLVDAVDKDGYS-PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
+ + + K G+ + A +IV + T + +H K
Sbjct: 115 VKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKNG 172
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTP-LHLAASHSHSRDVLMILLSH 221
+ + +I+LL+Y N + P + LA + ++L L +
Sbjct: 173 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD-IEMLQALFKY 217
Score = 124 bits (314), Expect = 2e-34
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 22/168 (13%)
Query: 56 LEAAEHNDSKTLEALL-DHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
L SK L++ L D D G+S + A + N+ + +
Sbjct: 4 LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIAD-------------NNVRLV 47
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
LL+ + PLH+A IV++L+ G D + G T L+ A
Sbjct: 48 CTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104
Query: 175 WNNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSH 221
N + V + + + G T + A + ++ LS
Sbjct: 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND-VSIVSYFLSE 151
Score = 102 bits (258), Expect = 2e-26
Identities = 18/187 (9%), Positives = 55/187 (29%), Gaps = 31/187 (16%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYS-PLHRACYN-------- 95
+ D L A + + +T++ + + + K G+ + A
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSY 147
Query: 96 ------DKNKRKILE-----AAEHNDSKTLEALLDLDSTLVDAVDKDGYSP-LHRACYNG 143
IL ++ + LLD ++ + + + P + A N
Sbjct: 148 FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNK 206
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
+++ L ++ + ++ ++ E +++ V+ + + +
Sbjct: 207 DIEMLQALFKYDIN-------IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259
Query: 204 LAASHSH 210
Sbjct: 260 KNNKLDE 266
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 129 bits (326), Expect = 2e-35
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKI 102
+K++R+ L +AA + D + +L+ ++ +D++G + L +N R
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN--EGRDQ 250
Query: 103 LEAAEHNDSKTLEALLD-------LDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QW 154
+ +A+ L++ + D+ G + LH A + IV+ L+ +
Sbjct: 251 VASAKL--------LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
G++ K DG TP+ A + E V+ L+ G V A T LA +++H ++
Sbjct: 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH-HNI 361
Query: 215 LMILLSH 221
+ I
Sbjct: 362 VDIFDRC 368
Score = 125 bits (317), Expect = 4e-34
Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 30/211 (14%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN----- 95
I+ RN N + L + + + + LH
Sbjct: 50 IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAIT 109
Query: 96 ------------DKNKRKIL-EAAEHNDSKTLEALLDLDSTL-------VDAVDKDGYSP 135
++ R +L A ++ ++ E L+ ++ V+A+D D +P
Sbjct: 110 EPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN---YGVDVN 192
L A +V L++ GAD + LH A + ++ +LN D+
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229
Query: 193 AQTNGGLTPLHLAASHSHSRDVLM--ILLSH 221
G+T L + A + V +L+
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260
Score = 101 bits (255), Expect = 3e-25
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 25/184 (13%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
++KN++N S + + + + P + N
Sbjct: 22 ENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG-----NDFL 76
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
+ N + + + + LH G I E + + +
Sbjct: 77 GDFNHTN---------LQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR-HN 125
Query: 166 WTPLHSACKWNNTECVIVLLNY--------GVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
T LH ++ E L+ + G DVNA TPL LA R ++
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-RRLVAY 184
Query: 218 LLSH 221
L+
Sbjct: 185 LMKA 188
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 121 bits (307), Expect = 4e-35
Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 19/140 (13%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACY 141
+G +PLH A N + ++ LL+ D V+A DK+G +PLH A
Sbjct: 1 NGRTPLHLAARN-------------GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAAR 44
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
NGH +V+LL++ GAD +G TPLH A + + E V +LL G DVNA+ G TP
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 202 LHLAASHSHSRDVLMILLSH 221
LHLAA + H +V+ +LL
Sbjct: 105 LHLAARNGH-LEVVKLLLEA 123
Score = 99.3 bits (249), Expect = 1e-26
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 58 AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
AA + + ++ LL+ D V+A DK+G +PLH A N H + ++
Sbjct: 9 AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNG-----------HLE--VVK 52
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
LL+ + V+A DK+G +PLH A NGH +V+LL++ GAD +G TPLH A +
Sbjct: 53 LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 176 NNTECVIVLLNYG 188
+ E V +LL G
Sbjct: 112 GHLEVVKLLLEAG 124
Score = 68.1 bits (168), Expect = 8e-15
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N +DKN R L AA + + ++ LL+ + V+A DK+G +PLH A N LE
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGH-----LE 82
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
+ LL+ + V+A DK+G +PLH A NGH +V+LL++ GA
Sbjct: 83 VVKL--------LLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 125 bits (315), Expect = 4e-35
Identities = 41/170 (24%), Positives = 56/170 (32%), Gaps = 27/170 (15%)
Query: 56 LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
L + S + D V + +P A D + L
Sbjct: 20 LIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWWTAARK-------------ADEQALS 62
Query: 116 ALL---DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTTIDGWTPLHS 171
LL D VDAVD++G + L G V LL + GAD + G T LH
Sbjct: 63 QLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 172 ACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
A + E V L+ G D+ + GLT L LA +
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-TTPKGNPMQF 166
Score = 109 bits (275), Expect = 4e-29
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 40/187 (21%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA D + L LL+ VDAVD++G + L K + L
Sbjct: 52 AARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGL-------------GSDKCVRLL 96
Query: 118 LDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
+ + +D D + G + LH A +VE L++ GAD + G T L A +
Sbjct: 97 AEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155
Query: 177 NTECVIVLLNYG----------------------VDVNAQTNGGLTPLHLAASHSHSRDV 214
T + +G ++ + G +L D
Sbjct: 156 KTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG-GDC 214
Query: 215 LMILLSH 221
+ H
Sbjct: 215 EWVKGVH 221
Score = 104 bits (262), Expect = 3e-27
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 85 GYSPLHRAC-YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
G + + L + S + + D V + +P A
Sbjct: 1 GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWWTAARKA 56
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGGLTPL 202
+ L++ D +G T L + +CV +L G D++ + GGLT L
Sbjct: 57 DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115
Query: 203 HLAASHSHSRDVLMILLSH 221
H+AA + +V+ L+
Sbjct: 116 HMAAGYVRP-EVVEALVEL 133
Score = 58.4 bits (142), Expect = 2e-10
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
+T +G K ++ + DV ++ TP AA + L LL
Sbjct: 10 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKAD-EQALSQLL 65
Query: 220 SHPNVD 225
+VD
Sbjct: 66 EDRDVD 71
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 124 bits (313), Expect = 6e-35
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 33/184 (17%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
AA+ ND + L LL + V G + LH AA +++ + L
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHI-------------AALYDNLEAAMVL 56
Query: 118 L----DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-------------TQK 160
+ +L + + +G + LH A N + N+V L+ GA
Sbjct: 57 MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 161 TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH---SRDVLMI 217
G PL A + E V +L+ +G D+ AQ + G T LH+ + + + +
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176
Query: 218 LLSH 221
LLS+
Sbjct: 177 LLSY 180
Score = 111 bits (279), Expect = 6e-30
Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 41/203 (20%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDH----DSTLVDAVDKDGYSPLHRACYNDKNKR 100
+ + L AA +++ + L++ + + +G + LH
Sbjct: 31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH---------- 80
Query: 101 KILEAAEHNDSKTLEALL------------DLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
A + + + ALL + + G PL A G IV
Sbjct: 81 ---IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI----VLLNYGVDVNAQT------NGG 198
LLI+ GAD + G T LH N +LL+Y + ++ N G
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
LTP LA + + L+
Sbjct: 198 LTPFKLAGVEGN-IVMFQHLMQK 219
Score = 95.4 bits (238), Expect = 6e-24
Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 17/171 (9%)
Query: 41 IEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNK 99
+ + + + L A + + + ALL ++ V A +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGE 122
Query: 100 RKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIV----ELLIQ 153
+ AA + + L++ D + A D G + LH + LL+
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 154 WGAD------TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
+ G TP A N L+ + A +
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 88.8 bits (221), Expect = 2e-21
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
SPL A + +LL G + + G T LH A ++N E +VL+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 191 V-----NAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ ++ G T LH+A + + +++ LL+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQN-VNLVRALLAR 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 119 bits (302), Expect = 2e-34
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 15/136 (11%)
Query: 80 AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
+ A N D ++ + V+ + G PLH A
Sbjct: 2 PLGSMCDKEFMWALKN-------------GDLDEVKDYVAKGED-VNRTLEGGRKPLHYA 47
Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
G I+E L+ GAD TPL SA + CV +LL+ G D + GL
Sbjct: 48 ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
Query: 200 TPLHLAASHSHSRDVL 215
T + + + +L
Sbjct: 108 TAFEATDNQAI-KALL 122
Score = 54.7 bits (133), Expect = 7e-10
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N + R L AA+ + LE LL + ++A DK +PL A Y +
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGH-----VS 87
Query: 105 AAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVE 149
+ LL D DG + +++
Sbjct: 88 CVKL--------LLSKGAD---KTVKGPDGLTAFEATDNQAIKALLQ 123
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 124 bits (313), Expect = 1e-33
Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 35/196 (17%)
Query: 46 NPQDKNKRNIL-EAAE--HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
+ + + L + ++ L+ ++ A DK +PL RA
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRA---------- 180
Query: 103 LEAAEHNDSKTLEALLDLDSTL----VDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
E + + L+ ++D + +D +K G S LH A ++ ++ G D
Sbjct: 181 ---MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237
Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLL-------------NYGVDVNAQTNGGLTPLHLA 205
+ PL+ + + LL + G V L + A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297
Query: 206 ASHSHSRDVLMILLSH 221
A S ++VL +L
Sbjct: 298 ADPSK-QEVLQLLQEK 312
Score = 123 bits (312), Expect = 2e-33
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 34/213 (15%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL----VDAVDKDGYSPLHRACYNDKNKR 100
+DK L A E + + L+ ++D + +D +K G S LH A
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI----- 221
Query: 101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ- 159
N +++ V+ D + PL+ + + + L+Q
Sbjct: 222 --------NWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272
Query: 160 ------------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
+ + +A + E + +L +V N G
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKK 332
Query: 208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIA 240
+ V + L+ + S S + ++
Sbjct: 333 KAA-PAVKRMKLAP-SAPVRTRSRSRARSSAVS 363
Score = 111 bits (281), Expect = 4e-29
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
++ D D + +H A G + V LI+ G G T LH ACK+
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ L + G + G P+HLA + D+++ L+
Sbjct: 64 GCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANK-TDLVVALVEG 106
Score = 111 bits (281), Expect = 4e-29
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 31/178 (17%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
D + AA + + L++ + ++ G + LH AC
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKF--------- 63
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
T + L + G P+H A ++V L++ +
Sbjct: 64 ----GCVDTAKYLASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------R 110
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR-DVLMILLSH 221
G P + + E + + + G T LH +++ IL+
Sbjct: 111 GQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 117 bits (297), Expect = 2e-33
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 27/174 (15%)
Query: 41 IEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDK 97
+E + + + L AA + + ALL+ + +A + G P+
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMMMG-- 55
Query: 98 NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGY-SPLHRACYNGHANIVELLIQWGA 156
E LL + + D P+H A G + + +L + GA
Sbjct: 56 ----------SAR--VAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
G P+ A + + + L + A+
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGP 151
Score = 106 bits (267), Expect = 7e-29
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
+ + L A G V L++ GA+ G P+ + +L
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL 63
Query: 185 LNYGVDVNAQTNGGLT-PLHLAASHSHSRDVLMILLSH 221
L +G + N LT P+H AA D L++L
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRA 100
Score = 48.6 bits (117), Expect = 2e-07
Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 24/94 (25%)
Query: 58 AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
AA TL L +D D G P+ A H D
Sbjct: 85 AAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELG-----------HRD--VAR 128
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
L A G + G ++I +
Sbjct: 129 YLRA------AAGGTRGSNHARIDAAEGPSDIPD 156
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 114 bits (288), Expect = 2e-32
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
KDG +PLH A N ++ ++ LL + V+A KDG +PLH A
Sbjct: 6 SKDGNTPLHNAAKN-------------GHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAK 51
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
NGHA IV+LL+ GAD + DG TP H A K + E V +L G DVNA++ G
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
Query: 202 LH 203
H
Sbjct: 112 HH 113
Score = 112 bits (284), Expect = 7e-32
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
KDG +PLH A NGHA V+ L+ GAD + DG TPLH A K + E V +LL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
DVNA++ G TP HLA + H +++ +L +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGH-HEIVKLLDAK 97
Score = 48.9 bits (118), Expect = 7e-08
Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 49/126 (38%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
N + K+ L AA++ ++ ++ LL + V+A KDG +
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNT----------------- 77
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
P H A NGH IV+LL GAD +
Sbjct: 78 ------------------------------PEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Query: 165 GWTPLH 170
H
Sbjct: 108 SSHHHH 113
Score = 30.4 bits (70), Expect = 0.22
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
G + G TPLH AA + H + + LLS
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGH-AEEVKKLLSK 31
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 114 bits (288), Expect = 3e-32
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 95 NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
+D K K+LEAA + L+ + V+A D+ G +PL+ A +GH IVE+L++
Sbjct: 12 SDLGK-KLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
GAD G+TPLH A + E VLL +G DVNAQ G T ++ + + D+
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN-EDL 128
Query: 215 LMILLSH 221
IL
Sbjct: 129 AEILQKL 135
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 117 bits (295), Expect = 4e-32
Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 24/162 (14%)
Query: 82 DKDGYSPLHRACYN--------------DKNKRKI-----LEAAEHNDSKTLEALLDLDS 122
+ G L + L+++ + ++ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI 182
+ +G + LH A GH IV+ L+Q+G + DGWTPLH A NN +
Sbjct: 62 D-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 183 VLLNYGVDVNAQTNGGL---TPLHLAASHSHSRDVLMILLSH 221
L+ G V A T + + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQFLYGV 161
Score = 85.0 bits (211), Expect = 6e-20
Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 21/157 (13%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A ++ ++ L+ V+A D DG++PLH A N+ + + L
Sbjct: 77 AVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASC-------------NNVQVCKFL 122
Query: 118 LDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
++ + D + G+ + L L
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 176 NNTECVIVLLNYGVDVNAQTNGGL--TPLHLAASHSH 210
N+ E + + G + A +
Sbjct: 183 NDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 108 bits (274), Expect = 9e-31
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
+G +PLH A NGH +V+LL++ GAD +G TPLH A + + E V +LL G D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
VNA+ G TPLHLAA + H +V+ +LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGH-LEVVKLLLEA 90
Score = 89.3 bits (223), Expect = 4e-23
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACY 141
+G +PLH A N H + ++ LL+ D V+A DK+G +PLH A
Sbjct: 1 NGRTPLHLAARNG-----------HLE--VVKLLLEAGAD---VNAKDKNGRTPLHLAAR 44
Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
NGH +V+LL++ GAD +G TPLH A + + E V +LL G
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 66.2 bits (163), Expect = 2e-14
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 19/101 (18%)
Query: 58 AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
AA + + ++ LL+ D V+A DK+G +PLH A N LE +
Sbjct: 9 AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGH-----LEVVK-------- 52
Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
LL+ + V+A DK+G +PLH A NGH +V+LL++ GA
Sbjct: 53 LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 111 bits (278), Expect = 1e-29
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 33/191 (17%)
Query: 51 NKRNILEAAEHNDSKTLEALLDH-------DSTLVDAVDKDGYSPLHRACYNDKNK---- 99
++ + + L LL++ + G + L +A N ++
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 100 -RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD- 157
+L+ + + L + G+S LH A V+LL++ GAD
Sbjct: 62 IMPLLQIDKDSG-----NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116
Query: 158 ------------TQKTTIDGWTPLHSACKWNNTECVIVLLNYGV---DVNAQTNGGLTPL 202
G PL A + V LL + A + G T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176
Query: 203 HLAASHSHSRD 213
H + +
Sbjct: 177 HALVMIADNSP 187
Score = 96.0 bits (239), Expect = 6e-24
Identities = 39/215 (18%), Positives = 58/215 (26%), Gaps = 37/215 (17%)
Query: 41 IEDSRNPQDKNKRNILEAA----EHNDSKTLEALLDHDSTL----------VDAVDKDGY 86
+ DS + + L A + + + LL D G+
Sbjct: 32 LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGH 91
Query: 87 SPLHRAC-YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
S LH A K+L E+ L A G PL A
Sbjct: 92 SALHIAIEKRSLQCVKLL--VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 146 NIVELLIQWG---ADTQKTTIDGWTPLH----------------SACKWNNTECVIVLLN 186
++V L++ A + T G T LH + L
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ GLTPL LAA ++ +L
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGK-IEIFRHILQR 243
Score = 70.6 bits (173), Expect = 1e-14
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 58 AAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKI--LEAAEHNDSKT 113
AA + LL++ ++A D G + LH N + L ++
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
+ A L L + + G +PL A G I ++Q
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 111 bits (278), Expect = 2e-29
Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 29/212 (13%)
Query: 43 DSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTL------VDAVDKD-GYSPLHRACYN 95
+ P+ ++R+I +A ++ + LE+LL + D + G + L +A N
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 96 DKNKRKILEAAEH--NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
N + + + ++ ++L + G + LH A + +V LL++
Sbjct: 65 LHNGQ--NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 154 WGAD--------------TQKTTIDGWTPLHSACKWNNTECVIVLLNYG---VDVNAQTN 196
GAD + G PL A N V LL D++A+ +
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Query: 197 GGLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
G T LH + V + +
Sbjct: 183 VGNTVLHALVEVAD-NTVDNTKFVTSMYNEIL 213
Score = 86.8 bits (215), Expect = 3e-20
Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 31/174 (17%)
Query: 58 AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKIL-EAAEHNDSKTL 114
A E + + L+++ D V A + + L AA N +
Sbjct: 108 AIERRNMTLVTLLVENGAD---VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164
Query: 115 EALLDLDSTL--VDAVDKDGYSPLHRACYNGHANIVE----------------LLIQWGA 156
+ LL + A D G + LH + L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224
Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
+ T G TPL A + +L + H AA H H
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271
Score = 47.9 bits (114), Expect = 9e-07
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 44 SRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
+ + +N+ L A L L + ++ G +PL A + K +
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK-----I 246
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
+ +L + H A ++ H +
Sbjct: 247 GVLAY--------ILQRE--------IHEPECRHAAAHHHHHH 273
Score = 44.4 bits (105), Expect = 2e-05
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNY-------GVDVNAQ-TNGGLTPLHLAA 206
A + + + A +N + + LL + D + G T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 207 SHSHS--RDVLMILLSH 221
+ H+ D + +LL
Sbjct: 63 LNLHNGQNDTIALLLDV 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 108 bits (273), Expect = 5e-29
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
+ +PL +L+AA + + ++ + + +++G + LH
Sbjct: 11 PRKARRARLNPLV----------LLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALH 59
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-N 196
A + +IV+ LI GA+ GWTPLH A N+T + L+ +G + A T +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Query: 197 GGLTPLHLAASHSH-SRDVLMILLSH 221
G T + D L
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADV 145
Score = 98.1 bits (245), Expect = 6e-25
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 18/180 (10%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + ++ L+ + V++ D G++PLH A A ND+ AL
Sbjct: 61 AICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCA-------------ASCNDTVICMAL 106
Query: 118 LDLDSTLVDAVDKDGYSPLHRA--CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
+ + + DG + + G+A+ L L
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE 166
Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS-HPNVDPHILSTSNE 234
E + V V + T AA H V P V P +
Sbjct: 167 FGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225
Score = 73.1 bits (180), Expect = 1e-15
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 148 VELLIQWGAD---TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
+ +++ ++ ++ L A E V + D + G+T LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 205 AASHSHSRDVLMILLSH 221
A ++ ++ L++
Sbjct: 61 AICGAN-YSIVDFLITA 76
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 108 bits (271), Expect = 8e-29
Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 24/196 (12%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
D++ R L A ++ +E LL V+ D G+SPLH A
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 96 ----------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
++N L A + + +L DA D + +HRA G+
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
+V +L+ + A T +G TPLH AC E L+ G + + TPL +A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Query: 206 ASHSHSRDVLMILLSH 221
+++ L+
Sbjct: 213 KGG---LGLILKRLAE 225
Score = 105 bits (264), Expect = 8e-28
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 17/187 (9%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
A + E +L S L D+D + LH AC ++ +E L
Sbjct: 14 AYSGKLDELKERILADKS-LATRTDQDSRTALHWACSA-------------GHTEIVEFL 59
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
L L V+ D G+SPLH A G IV+ L+ GA +G TPLH A N
Sbjct: 60 LQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
E ++LL G + +A+ + T +H AA+ + ++ ILL + +I T +
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN-LKMVHILLFY-KASTNIQDTEGNTPL 176
Query: 238 EIATRSG 244
+A
Sbjct: 177 HLACDEE 183
Score = 94.9 bits (236), Expect = 9e-24
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
+ A + E ++ + +T D T LH AC +TE V LL GV
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
VN + + G +PLH+AAS +++ LL + ++ + + A
Sbjct: 66 VNDKDDAGWSPLHIAASAG-XDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKN 117
Score = 62.2 bits (151), Expect = 1e-11
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+ + A E +L T LH A S H +++ LL
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQL 62
Score = 53.7 bits (129), Expect = 8e-09
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN---------- 95
N ++N L A + + +L DA D + +HRA
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 96 ---------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
D L A + L + +K+ +PL A G
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLG 217
Query: 147 IVELLIQWGAD 157
++ + G +
Sbjct: 218 LILKRLAEGEE 228
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 105 bits (265), Expect = 2e-28
Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 30/184 (16%)
Query: 53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
R + AA + L + D + L+ N + K
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN---------NNDEARYK 56
Query: 113 TLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANI------VELLIQWGADTQKTTID 164
L++ D + + K+G + G +I ++ ++ GAD
Sbjct: 57 ISMFLINKGAD---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113
Query: 165 GWTPLHSACKWNNTECV-------IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
+ + ++ G+ + + GLT L L +
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP-IALKM 172
Query: 218 LLSH 221
+ +
Sbjct: 173 MEDY 176
Score = 100 bits (251), Expect = 3e-26
Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 14/164 (8%)
Query: 95 NDKNKRK-ILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
N ++ + + AA + L + + Y L I L
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 152 IQWGADTQKTTIDGWTPLHSACKWNN------TECVIVLLNYGVDVNAQTNGGLTPLHLA 205
I GAD + T +G T + TE + L G D+ A +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 206 ASHSHSRDVLMI-----LLSHPNVDPHILSTSNESAREIATRSG 244
+ + MI + S + I +A E R
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Score = 99.7 bits (249), Expect = 5e-26
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 29/164 (17%)
Query: 49 DKNKRNILEAAEHNDS-----KTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRK 101
K NIL N++ K L++ D + + K+G +
Sbjct: 35 SVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTTLFFPLFQG--GGND 89
Query: 102 ILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVE-------LLI 152
I E + L+ D + A+ K + + +N + E +
Sbjct: 90 ITGTTE-----LCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141
Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
Q G G T L + + ++ +Y N + N
Sbjct: 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 103 bits (259), Expect = 8e-27
Identities = 38/184 (20%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 51 NKRNILEAAEHNDSKTL----EALLDHDSTLVD---AVDKDGYSPLHRACYNDKNKRKIL 103
N+ + + L LL H L D G + L +A N R
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD------ 157
+ ++ + + ++ V G + LH A + VELL++ GAD
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 158 --------TQKTTIDGWTPLHSACKWNNTECVIVLLNYG---VDVNAQTNGGLTPLHLAA 206
G PL A N V L G D+ Q + G T LH
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184
Query: 207 SHSH 210
+ +
Sbjct: 185 AIAD 188
Score = 83.7 bits (207), Expect = 3e-19
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 36/166 (21%)
Query: 98 NKRKILEAAEHNDSKTLEALLD-LDSTLVDAVDKD------GYSPLHRACYN---GHANI 147
N+ + + LE LL L + D++ G + L +A N G +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 148 VELLIQWGADTQKTT-----------IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
+ +L+ T G T LH A + V +L+ G DV+AQ
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 197 G--------------GLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
G G PL LAA + ++ L + + +
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQ-PHIVHYLTENGHKQADL 169
Score = 70.6 bits (173), Expect = 1e-14
Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 20/155 (12%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL-EAAEHNDSKTLEA 116
A E +E L++ + V A + + L AA N +
Sbjct: 100 AIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158
Query: 117 LLDLDSTL--VDAVDKDGYSPLHRACYNGH---------ANIVELLIQWGADTQKTTI-- 163
L + + D G + LH + +LL+ A T
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218
Query: 164 -----DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
DG +PL A K ++ + A
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 97.6 bits (244), Expect = 4e-26
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDA-VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
+ H+ L+ + + D L A G + V +L+ GAD
Sbjct: 1 GSSHHHHHHSSGLVP-----RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
+G TPLH A + + E V +LL G DV AQ G T ++ + +
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Score = 81.1 bits (201), Expect = 8e-20
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 22/129 (17%)
Query: 58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
+ H+ L+ S + D L A A + L
Sbjct: 1 GSSHHHHHHSSGLVPRGS----HMGSDLGKKLLEA-------------ARAGQDDEVRIL 43
Query: 118 LDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
+ D V A DK+G +PLH A NGH +V+LL++ GAD G T +
Sbjct: 44 MANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 176 NNTECVIVL 184
N + +L
Sbjct: 101 GNEDLAEIL 109
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 90.1 bits (223), Expect = 3e-21
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 4/147 (2%)
Query: 63 DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS 122
DS T EALLD+ + D + LH AA++ + ++ +
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-SAAAKYYLDILMGWIVKKQN 237
Query: 123 TLVDAVDKDGYSPLHRACYNGHANIVELL---IQWGADTQKTTIDGWTPLHSACKWNNTE 179
+ + + S + +I+E L +G T L+ A + N
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297
Query: 180 CVIVLLNYGVDVNAQTNGGLTPLHLAA 206
V LL+YG D GL P+ A
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 87.0 bits (215), Expect = 3e-20
Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 26/223 (11%)
Query: 46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
N Q L+ + + + L++DS+ ++ +
Sbjct: 57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV------------S 104
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
+ + +A + L VD+ G +PLH + +V+ L++ G++ G
Sbjct: 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164
Query: 166 WTPLHSACKWNN---TECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHSR--------- 212
+ L A K N + LL+Y + + + T LH S
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224
Query: 213 -DVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE 254
D+LM + P T+ + ++ + E ++
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267
Score = 82.4 bits (203), Expect = 2e-18
Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 30/211 (14%)
Query: 47 PQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
P D++ L + + ++ L+ H S D G S L +A + N
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNY------ 178
Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH------------ANIVELLIQ 153
DS T EALLD + D + LH ++ +++
Sbjct: 179 ----DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY----GVDVNAQTNGGLTPLHLAASHS 209
++ + + + ++ L+ +NAQ + G T L++AA
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Query: 210 HSRDVLMILLSHPNVDPHILSTSNESAREIA 240
+ ++ LL + DP I + S +
Sbjct: 295 N-ISIVDALLDY-GADPFIANKSGLRPVDFG 323
Score = 70.4 bits (172), Expect = 3e-14
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 2/129 (1%)
Query: 46 NPQDKNKRNIL--EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
+D R IL + A + L+ + K P+ ++K
Sbjct: 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 254
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
+ L + + +++A D +G + L+ A G+ +IV+ L+ +GAD
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
Query: 164 DGWTPLHSA 172
G P+
Sbjct: 315 SGLRPVDFG 323
Score = 69.7 bits (170), Expect = 4e-14
Identities = 29/243 (11%), Positives = 61/243 (25%), Gaps = 30/243 (12%)
Query: 2 SDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
+ E+ +L+ ++ F Q + + N++ + +
Sbjct: 48 ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107
Query: 62 NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
+ +A + L VD+ G +PLH + + ++ L+
Sbjct: 108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-------------ANLELVKHLVKHG 154
Query: 122 STLVDAVDKDGYSPLHRACYNGHA----NIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
S D G S L +A + + LL T LH +
Sbjct: 155 SN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Query: 178 TECVIVLLNYGVDV------------NAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
Y +D+ + +L L +
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273
Query: 226 PHI 228
+
Sbjct: 274 NML 276
Score = 31.9 bits (72), Expect = 0.19
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 46 NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYND 96
N QD N L AA + ++ALLD+ + +K G P+ +
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVDFGAGLE 327
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 78.9 bits (194), Expect = 3e-17
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 131 DGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY 187
LH A + +V+ +IQ G DG T LH A +N +C+ +LL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
V G T L +A H ++ +
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 56.2 bits (135), Expect = 2e-09
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTI------DGWTPLHSACKWNNTECVIV---L 184
L A N V G D + LH A K N + + +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
+ G ++A+ G T LH AA ++ D L +LL ++ + E+A +IA +
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQP-DCLKLLLKG-RALVGTVNEAGETALDIARKKH 270
Score = 44.6 bits (105), Expect = 1e-05
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 30 QVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEA--LLDHDSTLVDAVDKDGYS 87
+ A D + Q + + A + + +L + + +DA DG +
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228
Query: 88 PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
LH A ++ + + LL LV V++ G + L A H
Sbjct: 229 ALHYAALYNQ-----PDCLK---------LLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 148 VELLIQ 153
ELL Q
Sbjct: 275 EELLEQ 280
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 79.6 bits (196), Expect = 3e-17
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 8/132 (6%)
Query: 100 RKILEAAEHNDSKTLEALL----DLDSTLVDAV-DKDGYSPLHRACYNGHAN---IVELL 151
+++ A + D ++ D L LH A + +V+ +
Sbjct: 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 193
Query: 152 IQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
IQ G DG T LH A +N +C+ +LL V G T L +A H
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 253
Query: 212 RDVLMILLSHPN 223
++ +
Sbjct: 254 ECEELLEQAQAG 265
Score = 52.6 bits (126), Expect = 4e-08
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 164 DGWTPLHSACKWNNTECVIV---LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
LH A K N + + ++ G ++A+ G T LH AA ++ D L +LL
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP-DCLKLLLK 228
Query: 221 HPNVDPHILSTSNESAREIATRSGIH 246
++ + E+A +IA +
Sbjct: 229 G-RALVGTVNEAGETALDIARKKHHK 253
Score = 37.6 bits (87), Expect = 0.003
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 17/147 (11%)
Query: 10 LTEKMQQLQESIRDGS-FNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLE 68
T + Q+L +I + ++ + A D + Q + + A + + +L
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188
Query: 69 A--LLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD 126
+ + +DA DG + LH A ++ + + LL LV
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQP-----DCLK---------LLLKGRALVG 234
Query: 127 AVDKDGYSPLHRACYNGHANIVELLIQ 153
V++ G + L A H ELL Q
Sbjct: 235 TVNEAGETALDIARKKHHKECEELLEQ 261
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 76.6 bits (188), Expect = 1e-16
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 129 DKDGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
+ + LH A + IV+ L+Q + K T G T LH C +N EC+ +LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL-------SHPNVD 225
+ G TPL +A H ++ SH +V+
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272
Score = 70.4 bits (172), Expect = 2e-14
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 16/152 (10%)
Query: 41 IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAV-----DKDGYSPLHRACYN 95
++ EA + D L L + + + + LH A
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV-- 177
Query: 96 DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
+ + ++ L +S +D G + LH C +A ++LL++
Sbjct: 178 --------RSVDRTSLHIVD-FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNY 187
A + G TPL A + + C +L
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 76.4 bits (187), Expect = 4e-16
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
+D +PL +A E L+Q GA+ + G PLH A +T + L G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
D+ A+ + G PL +A +++ V ++ L+
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 58.3 bits (140), Expect = 5e-10
Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 5/167 (2%)
Query: 81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
+ K R + + + + D + L RA
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207
Query: 141 -YNGHANIVELLIQWGADTQKTT--IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
+ + + GAD D TPL A N+ LL G +VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
G PLH A H+ + + L D + IA +
Sbjct: 268 GRGPLHHATILGHT-GLACLFLKR-GADLGARDSEGRDPLTIAMETA 312
Score = 56.3 bits (135), Expect = 2e-09
Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 15/185 (8%)
Query: 2 SDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
+ + Q + + + + +
Sbjct: 151 LPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHP 210
Query: 62 NDSKTLEALLDHDSTLVDAV-DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
T+ L H + + +D +PL +A +S L
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQAT--------------AANSLLACEFLLQ 256
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
+ V+ D G PLH A GH + L ++ GAD +G PL A + N +
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Query: 181 VIVLL 185
V +L
Sbjct: 317 VTLLR 321
Score = 39.4 bits (91), Expect = 7e-04
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEH 108
++ L A +S L + V+ D G PLH A L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
D + A D +G PL A +A+IV LL
Sbjct: 292 AD--------------LGARDSEGRDPLTIAMETANADIVTLLRL 322
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 71.9 bits (176), Expect = 1e-14
Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 11/179 (6%)
Query: 68 EALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA 127
+ ++ +L+ K+ N + R++L + ++ + L +
Sbjct: 32 HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLW----SDAHK 87
Query: 128 VDKDGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
A G ++ + LL+ + + + A + + + L
Sbjct: 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147
Query: 185 LNYGVDVNA--QTNGGLTPLHLAASHSHSRDVLMILLSH-PNVDPHILSTSNESAREIA 240
LAA + H VL L P ++ N A A
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHL-HVLNRLCELAPTEATAMIQAENYYAFRWA 205
Score = 61.1 bits (148), Expect = 6e-11
Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 43/232 (18%)
Query: 36 DDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLE---ALLDHDSTLVDAVDKDGYSPLHRA 92
+ D+ K++ AA S L+ LL D +V + + Y A
Sbjct: 77 NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQAENYQAFRLA 135
Query: 93 CYN--------------DKNKRKILE--------AAEHNDSKTLEALLDLDSTLVDAV-- 128
N + I AAE+ L L +L T A+
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC-----------KWNN 177
++ Y+ A GH N++ L+ I + K +
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255
Query: 178 TECVIVLLNYGVDV--NAQTNGGLTPLHLAASHSHSR--DVLMILLSHPNVD 225
+ + D+ ++ G L + D + LLS P +
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307
Score = 57.3 bits (138), Expect = 1e-09
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 129 DKDGYSPLHRACYNGHANIVELL--------IQWGADTQKTTIDGWTPLHSACKWNNTEC 180
G+ L +++ + I+ A T D L A + N
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
+LL+ + ++ + D+ + L H
Sbjct: 335 CALLLSIPSVLALTKA---NNYYINETGGRL-DLRAVALEH 371
Score = 54.6 bits (131), Expect = 8e-09
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 11/118 (9%)
Query: 72 DHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDS-KTLEALLDLDSTLVDAVDK 130
+ + G+ L +N +L+ S ++AL +
Sbjct: 265 GVFDLVTKSECLQGFYMLRNLI--RRNDEVLLDDIRFLLSIPGIKALAP-----TATIPG 317
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
D L A G+ LL+ + T + + + + V L +
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKANNY---YINETGGRLDLRAVALEHH 372
Score = 32.2 bits (73), Expect = 0.14
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 24/109 (22%)
Query: 58 AAEHNDSKTLEALLDHDSTL-------VDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
ND L+ + S + D L A +
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG-----------NQG 333
Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
LL + S ++ + Y + G ++ + ++
Sbjct: 334 --ACALLLSIPS-VLALTKANNY---YINETGGRLDLRAVALEHHHHHH 376
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 5e-04
Identities = 53/271 (19%), Positives = 86/271 (31%), Gaps = 93/271 (34%)
Query: 58 AAEHNDSKTLEAL---LDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE-H----- 108
AA+ + E + L + S+LV+ + + C + LE + H
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAK 107
Query: 109 ---NDSKTLEALLDLDSTLVDA-------VDKDGYSPLHRACYNGHANIV---------- 148
+ TL +L + A DK S L RA G+A +V
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 149 ----EL-------------LIQWGADT----QKTTIDGWTPLHSA----CKW-NNTE--- 179
EL LI++ A+T +TT+D + + +W N
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLNILEWLENPSNTP 226
Query: 180 ---------------CVIVLLNYGVDVNAQTNGGLTPL----HLAASHSHSRDVLM-ILL 219
VI L +Y V G TP +L + HS+ ++ + +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLL---GFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 220 SHPNVDPHILSTSNESAREIATRSGIHYGLF 250
+ + S ES R I LF
Sbjct: 284 AE--------TDSWESFFVSV-RKAITV-LF 304
Score = 26.9 bits (59), Expect = 9.6
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 3 DDEDSNELTEKMQQLQESIRDGS------FNI-GQ--VSAWDDDVVGIEDSRNPQDKNK- 52
E + E++ + R G +N+ Q V+A D+ ++ N + K
Sbjct: 1822 SQEALQYVVERVGK-----RTGWLVEIVNYNVENQQYVAA--GDLRALDTVTNVLNFIKL 1874
Query: 53 RNILEAAEHNDSKTLEALLDH 73
+ I + E S +LE + H
Sbjct: 1875 QKI-DIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 71/290 (24%)
Query: 10 LTEKMQQLQESIRDGS-FNIGQVSA-WDDDVVGIEDSRNPQDKNKRNI-------LEAAE 60
L + Q L + + + ++ D + ++ ++ I LE AE
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 61 HND---------------SKTLEAL--------------LDHDSTLVDAVDKDGYSPLHR 91
+ + L + H +LV+ K+ +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP- 429
Query: 92 ACYNDKNKRKILEAAEHN---DSKTLEALLDLDSTLVDAVDKDGYSPLHRACY----NGH 144
+ Y + + E A H D + D D + +D Y H + H
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIG-HHLKNIEH 486
Query: 145 ANIVELLIQWGAD----TQKTTIDGWTPLHSACKWNNTECVIVLLNYG--VDVNAQTNGG 198
+ L D QK D T +++ NT + L Y + N
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGSILNT--LQQLKFYKPYICDNDPKYER 543
Query: 199 LTP-----LHLAASH---SHSRDVLMILLSHPNVDPHILSTSNESAREIA 240
L L + S D+L I L + + E+ +++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-----AIFEEAHKQVQ 588
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 34.7 bits (79), Expect = 0.020
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 78 VDAVDKDGYSPLHR--ACY-----NDKNKRKILEAAE 107
VD+ DK PL R + K K+ ++ A E
Sbjct: 133 VDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYE 169
>2wco_A Putative secreted lyase; family 8, glycosaminoglycans (GAGS)
hydrolysis; HET: GC4 NAG; 1.94A {Streptomyces coelicolor
A3} PDB: 2wda_A* 2x03_A
Length = 765
Score = 31.3 bits (70), Expect = 0.38
Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 1/136 (0%)
Query: 11 TEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEAL 70
Q + +S+ + D V G SR + +++ + + + + A+
Sbjct: 277 DPGRQLVLDSVEHAYAPLIHDGLVMDTVNGRAISRGYLKSDDLHVMRSDHFHGQQLIAAM 336
Query: 71 LDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK 130
+ +++ + + +L A + + D+ A +
Sbjct: 337 AV-LAGGASNAERERWHARIKGWIERDTVTPVLTAPQFPVADLTRLHAIADAPGEAAPEP 395
Query: 131 DGYSPLHRACYNGHAN 146
G+ H
Sbjct: 396 VGHHLFAAMDRAVHRR 411
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR;
NMR {Synechococcus elongatus} SCOP: g.46.1.1
Length = 55
Score = 26.3 bits (57), Expect = 1.9
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 123 TLVDAVDKDGYSPLHRACYNGHAN 146
A+D++G AC +GH
Sbjct: 18 DPSKAIDRNGLYYCSEACADGHTG 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.6
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 12/29 (41%)
Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSP 135
E K L+A L L Y+
Sbjct: 18 EKQALKKLQASLKL------------YAD 34
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV,
viral prote antiviral protein complex; 1.80A {Human
immunodeficiency virus 1}
Length = 37
Score = 25.2 bits (55), Expect = 3.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 41 IEDSRNPQDKNKRNILE 57
+E+S+ QD+N+R++LE
Sbjct: 21 LEESQEQQDRNERDLLE 37
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 148 VELLIQWGADTQKTTIDGWTP 168
VE LI++ DT+K GW
Sbjct: 546 VEALIEFIYDTEKNGGLGWDL 566
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding,
deoxyribonucleoside kinase, DNA synthesis, phosphate
accept nucleotide-binding; HET: THM; 2.7A {Bacillus
anthracis} PDB: 2ja1_A*
Length = 214
Score = 26.8 bits (60), Expect = 5.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 82 DKDGYSPLHRACYNDKNKRK 101
+ Y P R C+ K++
Sbjct: 195 ASESYEPRCRHCHAVPTKQR 214
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2,
protein structure initiativ midwest center for
structural genomics; HET: MSE; 2.00A {Rhodopseudomonas
palustris} SCOP: a.118.1.25
Length = 123
Score = 26.3 bits (57), Expect = 6.0
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 212 RDVLMILLSHPNVD------PHILSTSNESAREI 239
R L+ L +PN+ L+ + ARE
Sbjct: 59 RTALLSLFEYPNMQVRLQAAKLTLAVAPVKAREQ 92
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 26.8 bits (59), Expect = 6.9
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLV--DAVDKDGYSPLHRACYNDKNKRKILEA 105
+D++++ A+ ++L + V + L +D + L A
Sbjct: 156 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELL-HDPDWTVRLAA 214
Query: 106 AEHNDSKTLEALLDLDS 122
EH + L L + D
Sbjct: 215 VEHASLEALRELDEPDP 231
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 26.6 bits (59), Expect = 7.1
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 21/84 (25%)
Query: 14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDH 73
++ + + S N+ + + +K + + L + D+
Sbjct: 60 AEKWAQDAKFSSANL----------ITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDN 109
Query: 74 DSTLVDA-----------VDKDGY 86
T+ + KDG
Sbjct: 110 GGTIAQNLNISVYPSWALIGKDGD 133
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 26.8 bits (60), Expect = 8.3
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 213 DVLMILLSHPNV--DPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMG 263
L L++ PNV P + + R + ++ + + + +G
Sbjct: 281 ARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVKVG 333
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane
anchored fusion protein, viral protein; 2.00A {Human
immunodeficiency virus type 1LW12}
Length = 63
Score = 24.8 bits (54), Expect = 9.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 41 IEDSRNPQDKNKRNILE 57
IE+S+N Q+KN++ +LE
Sbjct: 26 IEESQNQQEKNEQELLE 42
>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A
{Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB:
1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A
Length = 752
Score = 26.7 bits (58), Expect = 9.4
Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 11/136 (8%)
Query: 11 TEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEAL 70
+ + I + + A D V G E SR+ H + A
Sbjct: 254 DPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQD----------HAVGHGIVAS 303
Query: 71 LDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK 130
+ + A + + + + + + +A++D D ++ A
Sbjct: 304 IVRLAQFAPAPHAAAFKQIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVD-DPSIAPAAAP 362
Query: 131 DGYSPLHRACYNGHAN 146
+ Y
Sbjct: 363 NLYKQYAAMDRAVLQR 378
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 26.4 bits (58), Expect = 9.6
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 151 LIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
Q G D TT+ G+TP + + L G+ V A
Sbjct: 149 AHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIA 191
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 26.6 bits (58), Expect = 9.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 3 DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVG-IEDSRNPQDKNKRNILEAAEH 61
+ S ++TE +QQL E R+ +V A + V IE P + + AE
Sbjct: 60 EFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAER 119
Query: 62 NDSKTLEALLDHDSTLVDA 80
L + D D +L DA
Sbjct: 120 FGGVLLSEIYD-DVSLEDA 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,030,615
Number of extensions: 237147
Number of successful extensions: 1579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 279
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.9 bits)