BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17863
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y + T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 191
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 192 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKL 278
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 279 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y + T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 191
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 192 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKL 278
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 279 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 193
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 194 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 222 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 280
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 281 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 316
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 194
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 195 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 281
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 282 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 205
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 206 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 234 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 292
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 293 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 328
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 187
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 188 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 216 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 274
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 275 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 310
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 194
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 195 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 281
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 282 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 194
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 195 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 281
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 282 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 188
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 189 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 275
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 276 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 311
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 123 MWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVG 173
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI---- 210
Query: 174 KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233
D P+ F+ + + IL + D L+
Sbjct: 211 -------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIH 292
L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQ 298
Query: 293 SVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 299 GHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 333
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 189
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 190 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 218 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 276
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 277 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 184
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 185 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 213 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 271
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 272 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 307
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 123 MWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVG 173
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI---- 212
Query: 174 KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233
D P+ F+ + + IL + D L+
Sbjct: 213 -------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIH 292
L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQ 300
Query: 293 SVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 301 GHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 335
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 188
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 189 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 275
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 276 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 150/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + +DK IK+W Y KT GH ++D
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 191
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 192 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 278
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KLW ++
Sbjct: 279 QGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 146/329 (44%), Gaps = 47/329 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 191
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 192 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 278
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNNVK 320
V+++ C HPT I SA N K
Sbjct: 279 QGHTDVVISTAC-HPTENIIASAALENDK 306
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 151/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
Y T+ A+ +V+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 122 MMWDVKS-------RSHH-PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDVK+ +H P+ ++D + SS DG W + TLI
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 191
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 192 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L + +I +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKL 278
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +KL+ ++
Sbjct: 279 QGHTDVVISTAC-HPTENIIASAALENDKTIKLYKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 151/336 (44%), Gaps = 31/336 (9%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATA 63
+QT+ ++R V F+ DG + DK +KLWN RN LL+T GH+ V
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 147
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
+ D IAS + DK+V LW GQ ++ H+S V V F+ D + S S D TV +
Sbjct: 148 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 124 WD-----VKSRSHH--PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKA 175
W+ +++ + H ++ S D Q +SD K K + + TL HS +
Sbjct: 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---S 263
Query: 176 VVNSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQ------EPIVDACFTRDCQCILTCST 228
VN + P + I SA + VKLW Q + F+ D Q I + S
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
D+ ++L+++ G+ L+ GH S + + S D Q +SD K K + +
Sbjct: 324 DKTVKLWNR-NGQHLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQ 379
Query: 289 TLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKLW 322
TL HS + V + P + I SA + VKLW
Sbjct: 380 TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 148/336 (44%), Gaps = 31/336 (9%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATA 63
+QT+ ++ V F DG + DK +KLWN RN LL+T GH+ V
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 311
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
+ D IAS + DK+V LW GQ ++ H+S V V F+ D + S S D TV +
Sbjct: 312 SPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 124 WD-----VKSRSHH--PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKA 175
W+ +++ + H ++ S D Q +SD K K + + TL HS +
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---S 427
Query: 176 VVNSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQ------EPIVDACFTRDCQCILTCST 228
V + P + I SA + VKLW Q + F+ D Q I + S
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
D+ ++L+++ G+LL+ GH S + S D Q +SD K K + +
Sbjct: 488 DKTVKLWNR-NGQLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 543
Query: 289 TLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKLW 322
TL HS + V + P + I SA + VKLW
Sbjct: 544 TLTGHS---SSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 37/339 (10%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATA 63
+QT+ ++ V F+ DG + DK +KLWN RN LL+T GH+ V
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAF 106
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
+ D IAS + DK+V LW GQ ++ H+S V V F+ D + S S D TV +
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 124 WDVKSRSHHPIQCCLD----------SKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSV 172
W+ R+ +Q S D Q +SD K K + + TL HS
Sbjct: 166 WN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS- 221
Query: 173 GKAVVNSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQ------EPIVDACFTRDCQCILT 225
+ V + P + I SA + VKLW Q + F D Q I +
Sbjct: 222 --SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Query: 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285
S D+ ++L+++ G+LL+ GH S + + S D Q +SD K K +
Sbjct: 280 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQ 335
Query: 286 QISTLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKLW 322
+ TL HS + V + P + I SA + VKLW
Sbjct: 336 HLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 144/335 (42%), Gaps = 37/335 (11%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDS 67
++ ++R V F+ DG + DK +KLWN RN LL+T GH+ V + D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127
IAS + DK+V LW GQ ++ H+S V V F+ D + S S D TV +W+
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 126
Query: 128 SRSHHPIQCCLD----------SKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAV 176
R+ +Q S D Q +SD K K + + TL HS +
Sbjct: 127 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SS 182
Query: 177 VNSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQ------EPIVDACFTRDCQCILTCSTD 229
V + P + I SA + VKLW Q + F+ D Q I + S D
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289
+ ++L+++ G+LL+ GH S + D Q +SD K K + + T
Sbjct: 243 KTVKLWNR-NGQLLQTLTGHSS---SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT 298
Query: 290 LI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKLW 322
L HS + V + P + I SA + VKLW
Sbjct: 299 LTGHS---SSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATA 63
+QT+ ++R V F+ DG + DK +KLWN RN LL+T GH+ V
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAF 516
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
+ D IAS + DK+V LW GQ ++ H+S V V F+ D + S S D TV +
Sbjct: 517 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Query: 124 WD 125
W+
Sbjct: 576 WN 577
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 33/251 (13%)
Query: 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLD----------SK 141
R H+S V V F+ D + S S D TV +W+ R+ +Q S
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 142 DSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKL 199
D Q +SD K K + + TL HS + V + P + I SA + VKL
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 200 WTAEEDYGQ------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 253
W Q + F+ D Q I + S D+ ++L+++ G+LL+ GH S
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 183
Query: 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIM 312
+ + S D Q +SD K K + + TL HS + V + P + I
Sbjct: 184 WGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIA 237
Query: 313 SACGN-NVKLW 322
SA + VKLW
Sbjct: 238 SASDDKTVKLW 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 22/247 (8%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
V + DG + L+ D ++LW+ + + GH +V + D+ QI SG+ DK+
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 79 VILWEVTTG--QPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDV---KSRSH 131
+ LW T G + + H+ V+CV+F+ +SS +++S D V +W++ K +++
Sbjct: 129 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 132 HP-----IQCCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
H + S D + G DG+ W L + + TL G ++N+LC P
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPN 244
Query: 186 RKHIMSACGNNVKLWTAE-----EDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R + +A G ++K+W E ++ QE I + QC + + LF T
Sbjct: 245 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 241 ELLEEYK 247
L+ ++
Sbjct: 305 NLVRVWQ 311
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 115/292 (39%), Gaps = 54/292 (18%)
Query: 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTC 102
LK + G ++ AT I S + DK++I+W++T G P R R H+ V+
Sbjct: 11 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 103 VKFNEDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFCGSSDGK 153
V + D +SGS D T+ +WD+ + + + S + QI GS D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213
I W + +C + + S + V+ PI
Sbjct: 129 IKLWNTL------------------GVCKYTVQDESHSEWVSCVRF----SPNSSNPI-- 164
Query: 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD 273
I++C D+ +++++ A +L + GH + + S G D
Sbjct: 165 ---------IVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKD 213
Query: 274 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325
G+ W L + + TL G ++N+LC P R + +A G ++K+W E
Sbjct: 214 GQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLE 262
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 19 VRFNVDGS--YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 76
VRF+ + S ++CG DK +K+WN L + GH +N T + D S ASG D
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 213
Query: 77 KSVILWEVTTGQ-----------------PVRRWREHASKVTCVKFNEDSSVVISGSQDN 119
+LW++ G+ P R W A+ + ++ + +++ +
Sbjct: 214 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE 273
Query: 120 TVMMWDVKSRSHHPIQC--CLDSKDSQ-IFCGSSDGKIYKWQL 159
+ S P QC S D Q +F G +D + WQ+
Sbjct: 274 VIST----SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + V + DGS C + G D + LW+ L T G ++ +A +
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCA 250
Query: 74 ASDKSVILWEVTTGQPVRRWRE---------HASKVTCVKFNEDSSVVISGSQDNTVMMW 124
A+ S+ +W++ V ++ + T + ++ D + +G DN V +W
Sbjct: 251 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Query: 125 DV 126
V
Sbjct: 311 QV 312
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 22/247 (8%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
V + DG + L+ D ++LW+ + + GH +V + D+ QI SG+ DK+
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 79 VILWEVTTG--QPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDV---KSRSH 131
+ LW T G + + H+ V+CV+F+ +SS +++S D V +W++ K +++
Sbjct: 152 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 132 HP-----IQCCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
H + S D + G DG+ W L + + TL G ++N+LC P
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPN 267
Query: 186 RKHIMSACGNNVKLWTAE-----EDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R + +A G ++K+W E ++ QE I + QC + + LF T
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 241 ELLEEYK 247
L+ ++
Sbjct: 328 NLVRVWQ 334
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 115/292 (39%), Gaps = 54/292 (18%)
Query: 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTC 102
LK + G ++ AT I S + DK++I+W++T G P R R H+ V+
Sbjct: 34 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 103 VKFNEDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFCGSSDGK 153
V + D +SGS D T+ +WD+ + + + S + QI GS D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213
I W + +C + + S + V+ PI
Sbjct: 152 IKLWNTL------------------GVCKYTVQDESHSEWVSCVRF----SPNSSNPI-- 187
Query: 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD 273
I++C D+ +++++ A +L + GH + + S G D
Sbjct: 188 ---------IVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKD 236
Query: 274 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325
G+ W L + + TL G ++N+LC P R + +A G ++K+W E
Sbjct: 237 GQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLE 285
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 19 VRFNVDGS--YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 76
VRF+ + S ++CG DK +K+WN L + GH +N T + D S ASG D
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236
Query: 77 KSVILWEVTTGQ-----------------PVRRWREHASKVTCVKFNEDSSVVISGSQDN 119
+LW++ G+ P R W A+ + ++ + +++ +
Sbjct: 237 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE 296
Query: 120 TVMMWDVKSRSHHPIQC--CLDSKDSQ-IFCGSSDGKIYKWQL 159
+ S P QC S D Q +F G +D + WQ+
Sbjct: 297 VIS----TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + V + DGS C + G D + LW+ L T G ++ +A +
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCA 273
Query: 74 ASDKSVILWEVTTGQPVRRWRE---------HASKVTCVKFNEDSSVVISGSQDNTVMMW 124
A+ S+ +W++ V ++ + T + ++ D + +G DN V +W
Sbjct: 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Query: 125 DV 126
V
Sbjct: 334 QV 335
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 42/286 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 156 VVPNEKA-DDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 190 MSACGNN-VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW Q+ + F+ + + L +T +++F
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 270
Query: 239 TGELLEEYKGH-KSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 282
+L E+ G+ K+ + S D Q +F G +D I WQ++
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 34/250 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L + TL + V SL P
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN 248
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 231 CLRLFDKATG 240
+R++ T
Sbjct: 309 VIRVWQVMTA 318
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + + +D K S I GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 128 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 164
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 165 --------DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 213
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L + TL + V SL P R + +A +K+++ + Y
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 42/286 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 156 VVPNEKA-DDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 190 MSACGNN-VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW Q+ + F+ + + L +T +++F
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 270
Query: 239 TGELLEEYKGH-KSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 282
+L E+ G+ K+ + S D Q +F G +D I WQ++
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 34/250 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L + TL + V SL P
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN 248
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 231 CLRLFDKATG 240
+R++ T
Sbjct: 309 VIRVWQVMTA 318
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + + +D K S I GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 128 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 164
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 165 --------DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 213
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L + TL + V SL P R + +A +K+++ + Y
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 42/286 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 38 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 89
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+
Sbjct: 90 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 149
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 150 VVPNEKA-DDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 205
Query: 190 MSACGNN-VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW Q+ + F+ + + L +T +++F
Sbjct: 206 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 264
Query: 239 TGELLEEYKGH-KSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 282
+L E+ G+ K+ + S D Q +F G +D I WQ++
Sbjct: 265 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 34/250 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 127 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L + TL + V SL P
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN 242
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 231 CLRLFDKATG 240
+R++ T
Sbjct: 303 VIRVWQVMTA 312
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + + +D K S I GS
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 122 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 158
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 159 --------DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 207
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L + TL + V SL P R + +A +K+++ + Y
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 42/286 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 156 VVPNEKA-DDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 190 MSACGNN-VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW Q+ + F+ + + L +T +++F
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 270
Query: 239 TGELLEEYKGHKSGDFRIECCLD-SKDSQ-IFCGSSDGKIYKWQLV 282
+L E+ G+ + L S D Q +F G +D I WQ++
Sbjct: 271 VDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 34/250 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L + TL + V SL P
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN 248
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 231 CLRLFDKATG 240
+R++ T
Sbjct: 309 VIRVWQVMTA 318
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + + +D K S I GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 128 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 164
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 165 --------DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 213
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L + TL + V SL P R + +A +K+++ + Y
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 42/285 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S +ISGS+D T+ +W +K + H+
Sbjct: 96 TGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 156 VVPNEKA-DDDSVTIISAGNDKXVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 190 MSACGNN-VKLW---TAEEDY---GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW + Y Q+ + F+ + + L +T +++F
Sbjct: 212 ASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 270
Query: 239 TGELLEEYKGH-KSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQL 281
+L E+ G+ K+ + S D Q +F G +D I WQ+
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 34/250 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L TL + V SL P
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL---SAQDEVFSLAFSPN 248
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 231 CLRLFDKATG 240
+R++ T
Sbjct: 309 VIRVWQVXTA 318
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + +D K S I GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 128 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 164
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 165 --------DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 213
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L TL + V SL P R + +A +K+++ + Y
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 42/284 (14%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHH------- 132
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 133 --PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 189
P + D I +D + W L +Q +G + +N+L + P I
Sbjct: 156 VVPNEKA-DDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 190 MSACGNN-VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLF----DKA 238
SA + + LW Q+ + F+ + + L +T +++F
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYL 270
Query: 239 TGELLEEYKGH-KSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 280
+L E+ G+ K+ + S D Q +F G +D I WQ
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 34/245 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 81 LWEVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130
+W + GQ + W V K ++DS +IS D V W++
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ I S D + + DG+I W L + TL + V SL P
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN 248
Query: 186 RKHIMSACGNNVKLWTAEEDY--------------GQEP-IVDACFTRDCQCILTCSTDE 230
R + +A +K+++ + Y EP V ++ D Q + TD
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 231 CLRLF 235
+R++
Sbjct: 309 VIRVW 313
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 46 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 99
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSS 150
V D + +S S D T+ +WDV + + + +D K S I GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
D I W + + L H+ V+ + P K A++
Sbjct: 128 DKTIKVWTIKGQCLATLLGHN---DWVSQVRVVPNEK--------------ADD------ 164
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
D I++ D+ ++ ++ ++ ++ GH S I S D +
Sbjct: 165 --------DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIAS 213
Query: 271 SS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
+ DG+I W L + TL + V SL P R + +A +K+++ + Y
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)
Query: 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 84 VTTGQ-----------------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ + P R W A+ F+ D ++ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY--S 282
Query: 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158
K+ H + + +F G +D I WQ
Sbjct: 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+T+ +++ + F+ G +C +D IKLW+ ++T GH H V+ + +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
I S + DK++ +WEV TG V+ + H V V+ N+D +++ S S D TV +W V
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 127 KSR 129
++
Sbjct: 264 ATK 266
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
+ C++T+ + +V +G + ++ DK IK+W +KT+ GH V
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS------------ 110
D + IAS ++D++V +W V T + REH V C+ + +SS
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 111 --------VVISGSQDNTVMMWDVKS 128
++SGS+D T+ MWDV +
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVST 327
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 129/325 (39%), Gaps = 40/325 (12%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS 72
+ + V F+ S ++ D IK+W+ +T GH V D + +AS
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 132
++D ++ LW+ + +R H V+ V + ++S S+D T+ MW+V++
Sbjct: 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT---- 223
Query: 133 PIQCCLDSKDSQIFCGSSDGKIYKW-QLVDSSQISTLIHSVGK-------AVVNSLCSHP 184
C+ + F G + W ++V +Q TLI S V C
Sbjct: 224 --GYCV-----KTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 271
Query: 185 TRKHI-MSACGNNVKLWTAEEDYGQEPIVDACFTRDC----QCILTCSTDECLRLFDKAT 239
R+H + C + W E Y T+ +L+ S D+ ++++D +T
Sbjct: 272 LREHRHVVECIS----WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Query: 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK-WQLVDSSQISTLIHSVGKAV 298
G L GH D + L + +D K + W + + TL + +
Sbjct: 328 GMCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHF 382
Query: 299 VNSLCSHPTRKHIMS-ACGNNVKLW 322
V SL H T ++++ + VK+W
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
G + L+ DK IK+W+ + L T GH + V I S A DK++ +W+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ ++ H VT + F++ + V++GS D TV +W+
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
C+ T+ +R V F+ G + L+C DK +++W+ +KT H H V
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Query: 65 CDSSQIASGASDKSVILWE 83
+ + +G+ D++V +WE
Sbjct: 390 KTAPYVVTGSVDQTVKVWE 408
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 96 HASKVTCVKFNEDSSVVISGSQDNTVMMWD---------VKSRSHHPIQCCLDSKDSQIF 146
H S VT V F+ SV++S S+D T+ +WD +K + D +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEED 205
S+D I W I T+ H V+S+ P HI+SA + +K+W +
Sbjct: 167 SCSADMTIKLWDFQGFECIRTM-HGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 206 Y-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
Y +E + +D I +CS D+ +R++ AT E E + H+
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
V + +G++ ++ D ++LWN + GH +V + D+ QI SG D +
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 79 VILWEVTTG--QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKS------ 128
+ +W V + R H V+CV+F+ D+ V++SG DN V +WD+ +
Sbjct: 133 LRVWNVKGECMHTLSR-GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 129 -RSHHPIQCCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+ H + C SS DG W L +S + A +N +C P
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM---AAGAPINQICFSPN 248
Query: 186 RKHIMSACGNNVKLW----------TAEEDYGQEPIVDAC----FTRDCQCILTCSTDEC 231
R + +A ++++ A E G + IV C ++ D + + TD
Sbjct: 249 RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
Query: 232 LRLF 235
+R++
Sbjct: 309 IRVW 312
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 46/290 (15%)
Query: 34 DKKIKLW--NPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEV 84
DK + W NP R+ +YG GH+ V+D + + + S + D S+ LW +
Sbjct: 37 DKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL 96
Query: 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK-------SRSHHP--IQ 135
GQ ++ H V V F+ D+ ++SG +DN + +W+VK SR H +
Sbjct: 97 QNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVS 156
Query: 136 CCLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTL------IHSVGKAVVNSLCSHPTR 186
C S I G D + W L ++ L + SV + SLC+ +
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 187 KHIMSACGNNVKLW------TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
+ +LW E PI CF+ + + + +T++ +R+FD
Sbjct: 217 DGV-------ARLWDLTKGEALSEMAAGAPINQICFSPN-RYWMCAATEKGIRIFDLENK 268
Query: 241 ELLEEYKGHKSGDFRI--EC---CLDSKDSQIFCGSSDGKIYKWQLVDSS 285
+++ E G +I EC + S ++ G +D I W + +++
Sbjct: 269 DIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL-LKTYGGHAHEVN--DATAACDSSQIAS 72
+ +V F+ D ++ G D +++WN + + G H V+ + + D+ I S
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
G D V +W++ TG+ V + H + VT V + D S+ S +D +WD+
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 42/264 (15%)
Query: 94 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI-------- 145
R + + C + E ++ V+S S+D T++ W + H +C D ++
Sbjct: 13 RGWVTSLACPQTPETATKVVSTSRDKTLLSWG-PNPDRHSSECSYGLPDRRLEGHSAFVS 71
Query: 146 -----------FCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193
S D + W L + Q L H+ K V++ S R+ +
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVAFSPDNRQIVSGGR 129
Query: 194 GNNVKLWTAEED------YGQEPIVDACF----TRDCQCILTCSTDECLRLFDKATGELL 243
N +++W + + G +C + D I++ D ++++D ATG L+
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGKAVVNS 301
+ KGH + + D C SS DG W L +S + A +N
Sbjct: 190 TDLKGHTNYVTSVTVSPDGS----LCASSDKDGVARLWDLTKGEALSEM---AAGAPINQ 242
Query: 302 LCSHPTRKHIMSACGNNVKLWTAE 325
+C P R + +A ++++ E
Sbjct: 243 ICFSPNRYWMCAATEKGIRIFDLE 266
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 78
F+ D SY TC +DKK+K+W+ L+ TY H+ +VN T + +A+G++D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128
+ LW++ + H + V +F+ D ++ S S D T+ +WDV+S
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
F+ DG +CG+DK ++++ L H EV + D S IA+ ++DK V
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRS-------- 130
+W+ TG+ V + EH+ +V C F S+ ++ +GS D + +WD+ +
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 131 HHPIQCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189
+ + C S D ++ S+DG + W + +++ RK I
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE---------------------RKSI 781
Query: 190 MSACGNNVKLWTAEEDYGQ--EPIVDAC-FTRDCQCILTCSTDECLRLFDKATGELLEE- 245
N + + + ED + E IV C ++ D I+ + ++ L LFD T LL E
Sbjct: 782 -----NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEI 835
Query: 246 YKGHKS 251
+ GH S
Sbjct: 836 HTGHHS 841
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 74
A+R ++F DG ++ D I++WN ++ H V D D S++ S +
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQD-SRLLSWS 1062
Query: 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW--DVKSRSHH 132
D +V +W V TG+ R + H V + D++ S S D T +W D+ S H
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122
Query: 133 P------IQCCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHS-------VGKAV-- 176
++C S D + G +G+I W + D L+HS G A
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ----LLHSCAPISVEEGTATHG 1178
Query: 177 --VNSLCSHPTRKHIMSACGNNVKLWTA 202
V +C P K ++SA G +K W
Sbjct: 1179 GWVTDVCFSPDSKTLVSA-GGYLKWWNV 1205
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLW-------------------------------NPYR 44
+ V F+ DGS LT D+ I++W + R
Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944
Query: 45 NL-LLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWEVTTGQPVRRWREHAS 98
L L+ G + +A +C +A G D ++ + E+ + H
Sbjct: 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004
Query: 99 KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS-------KDSQIFCGSSD 151
V ++F D +IS S+D+ + +W+ ++ + +Q ++ +DS++ S D
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD 1064
Query: 152 GKIYKWQLV 160
G + W ++
Sbjct: 1065 GTVKVWNVI 1073
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 46/273 (16%)
Query: 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86
Y D IK+ N + + GH V D + S + D + +W T
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV-KSRSHHPIQC-------CL 138
G V + H V + +DS ++S S D TV +W+V R C C
Sbjct: 1035 GDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-- 196
S D+ F +S K K + S + + +H + CS + I+ A G++
Sbjct: 1093 ISSDATKFSSTSADKTAK---IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149
Query: 197 -VKLWTAEEDYGQ-----EPI-------------VDACFTRDCQCILTCSTDECLRLFDK 237
+++W + GQ PI D CF+ D + ++ S L+ ++
Sbjct: 1150 EIRIWNVSD--GQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNV 1205
Query: 238 ATGELLEEY--------KGHKSGDFRIECCLDS 262
ATG+ + + K H S DFR +D+
Sbjct: 1206 ATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDN 1238
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 114/284 (40%), Gaps = 38/284 (13%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
++ DG + +K + LL + + GH + + S V
Sbjct: 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865
Query: 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-------RSHHP 133
LW + + V R H S V V F+ D S ++ S D T+ +W+ K
Sbjct: 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 134 IQCCLDSKDSQIFCGSSDGKIYKWQLV--DSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191
I ++ + + I QL+ + QI L +A V+ C P +++
Sbjct: 926 IDVVFQENETMVLAVDN---IRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYV-- 976
Query: 192 ACGN-----------NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
A G+ N +++++ + ++ + FT D + +++ S D +++++ TG
Sbjct: 977 AFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 241 ELLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
+ + + H+ DFR+ +DS++ S DG + W ++
Sbjct: 1036 DYV-FLQAHQETVKDFRL-----LQDSRLLSWSFDGTVKVWNVI 1073
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 70
C QG + + + D + + +DK K+W+ L GH V + + D +
Sbjct: 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 71 ASGASDKSVILWEVTTGQ------PV---RRWREHASKVTCVKFNEDSSVVISG 115
A+G + + +W V+ GQ P+ H VT V F+ DS ++S
Sbjct: 1143 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 78
F+ D SY TC +DKK+K+W+ L+ TY H+ +VN T + +A+G++D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128
+ LW++ + H + V +F+ D ++ S S D T+ +WDV+S
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
F+ DG +CG+DK ++++ L H EV + D S IA+ ++DK V
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRS-------- 130
+W+ TG+ V + EH+ +V C F S+ ++ +GS D + +WD+ +
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 131 HHPIQCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189
+ + C S D ++ S+DG + W + +++ RK I
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE---------------------RKSI 788
Query: 190 MSACGNNVKLWTAEEDYGQ--EPIVDAC-FTRDCQCILTCSTDECLRLFDKATGELLEE- 245
N + + + ED + E IV C ++ D I+ + ++ L LFD T LL E
Sbjct: 789 -----NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEI 842
Query: 246 YKGHKS 251
+ GH S
Sbjct: 843 HTGHHS 848
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 74
A+R ++F DG ++ D I++WN ++ H V D D S++ S +
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQD-SRLLSWS 1069
Query: 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW--DVKSRSHH 132
D +V +W V TG+ R + H V + D++ S S D T +W D+ S H
Sbjct: 1070 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1129
Query: 133 P------IQCCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHS-------VGKAV-- 176
++C S D + G +G+I W + D L+HS G A
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ----LLHSCAPISVEEGTATHG 1185
Query: 177 --VNSLCSHPTRKHIMSACGNNVKLWTA 202
V +C P K ++SA G +K W
Sbjct: 1186 GWVTDVCFSPDSKTLVSA-GGYLKWWNV 1212
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLW-------------------------------NPYR 44
+ V F+ DGS LT D+ I++W + R
Sbjct: 892 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 951
Query: 45 NL-LLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWEVTTGQPVRRWREHAS 98
L L+ G + +A +C +A G D ++ + E+ + H
Sbjct: 952 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1011
Query: 99 KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS-------KDSQIFCGSSD 151
V ++F D +IS S+D+ + +W+ ++ + +Q ++ +DS++ S D
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD 1071
Query: 152 GKIYKWQLV 160
G + W ++
Sbjct: 1072 GTVKVWNVI 1080
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 46/273 (16%)
Query: 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86
Y D IK+ N + + GH V D + S + D + +W T
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV-KSRSHHPIQC-------CL 138
G V + H V + +DS ++S S D TV +W+V R C C
Sbjct: 1042 GDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1099
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-- 196
S D+ F +S K K + S + + +H + CS + I+ A G++
Sbjct: 1100 ISSDATKFSSTSADKTAK---IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1156
Query: 197 -VKLWTAEEDYGQ-----EPI-------------VDACFTRDCQCILTCSTDECLRLFDK 237
+++W + GQ PI D CF+ D + ++ S L+ ++
Sbjct: 1157 EIRIWNVSD--GQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNV 1212
Query: 238 ATGELLEEY--------KGHKSGDFRIECCLDS 262
ATG+ + + K H S DFR +D+
Sbjct: 1213 ATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDN 1245
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 112/283 (39%), Gaps = 36/283 (12%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
++ DG + +K + LL + + GH + + S V
Sbjct: 813 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 872
Query: 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-------RSHHP 133
LW + + V R H S V V F+ D S ++ S D T+ +W+ K
Sbjct: 873 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 134 IQCCLDSKDSQIFCGSSDGKIYKWQLV--DSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191
I ++ + + I QL+ + QI L +A V+ C P +++
Sbjct: 933 IDVVFQENETMVLAVDN---IRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYV-- 983
Query: 192 ACGN-----------NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
A G+ N +++++ + ++ + FT D + +++ S D +++++ TG
Sbjct: 984 AFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 241 E-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
+ + + DFR+ +DS++ S DG + W ++
Sbjct: 1043 DYVFLQAHQETVKDFRL-----LQDSRLLSWSFDGTVKVWNVI 1080
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 70
C QG + + + D + + +DK K+W+ L GH V + + D +
Sbjct: 1090 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1149
Query: 71 ASGASDKSVILWEVTTGQ------PVRRWR---EHASKVTCVKFNEDSSVVISG 115
A+G + + +W V+ GQ P+ H VT V F+ DS ++S
Sbjct: 1150 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 119/281 (42%), Gaps = 24/281 (8%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
G+ ++ D +K+W+ L+T GH V ++ + I SG++D+++ +W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-------RSHHPIQCC 137
TG+ + H S V C+ +E V+SGS+D T+ +WD+++ H C
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244
Query: 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS-ACGNN 196
+ ++ G+ D + W + T +H++ H++S + +
Sbjct: 245 VQYDGRRVVSGAYDFMVKVW----DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 197 VKLWTAEED------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
+++W E G + + +D +++ + D ++++D TG+ L+ +G
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
+ CL + + S DG + W L I L+
Sbjct: 360 KHQSAV-TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 30/266 (11%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
C++T+ G + + + + ++ +D+ +K+WN + T GH V
Sbjct: 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMH 206
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
++ SG+ D ++ +W++ TGQ + H + V CV++ D V+SG+ D V +W
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW 264
Query: 125 DVKSRS-HHPIQ------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
D ++ + H +Q L + GS D I W + + I TL
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH------ 318
Query: 178 NSLCSHPTRKHIMSACGN---NVKLWTAE--------EDYGQEPIVDACFTRDCQCILTC 226
SL S K + GN VK+W + + + C + ++T
Sbjct: 319 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 378
Query: 227 STDECLRLFDKATGELLEEYKGHKSG 252
S D ++L+D TGE + +SG
Sbjct: 379 SDDGTVKLWDLKTGEFIRNLVTLESG 404
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 22/254 (8%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
K GH V C ++I SG+ D ++ +W TG+ +R H V + ++
Sbjct: 112 KVLKGHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 109 SSVVISGSQDNTVMMWDVKS-------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
++ISGS D T+ +W+ ++ H C+ + ++ GS D + W +
Sbjct: 171 --IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED---YGQEPIVDACFTR 218
+ L+ G + R+ + A VK+W E + + + + ++
Sbjct: 229 GQCLHVLM---GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 219 --DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276
D +++ S D +R++D TG + GH+S + ++ KD+ + G++D +
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTV 341
Query: 277 YKWQLVDSSQISTL 290
W + + TL
Sbjct: 342 KIWDIKTGQCLQTL 355
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 40/251 (15%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 78
F+ D + TC DKK+K+WN L+ TY H+ +VN T + +A+G+SD
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP----- 133
+ LW++ + H + V +F+ D ++ S S D T+ +WD S +
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK 790
Query: 134 ----------------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
++CC S D ++ KI+ + + +S + IH+ G
Sbjct: 791 QFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFD-IHTSGLLGEIHT-GHHST 848
Query: 178 NSLCSHPTRKHIMSACGNN--VKLWTAEEDYGQEPIVD----------ACFTRDCQCILT 225
C + H+ + V+LW + + + D F+ D LT
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTD---SRSKVADCRGHLSWVHGVMFSPDGSSFLT 905
Query: 226 CSTDECLRLFD 236
S D+ +RL++
Sbjct: 906 SSDDQTIRLWE 916
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
F+ DG +CG+DK ++++ L H EV + D IA+ + DK V
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRS-------- 130
+W TG+ V + EH+ +V C F S ++ +GS D + +WD+ +
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 131 HHPIQCCLDSKDSQIFCG-SSDGKIYKW 157
+ + C S D ++ S+DG + W
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASD 76
++F D ++ D +I++WN + + L+ GH V D +S++ S + D
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRL-LKNSRLLSWSFD 1070
Query: 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV-------KSR 129
+V +W + TG + + H V + D++ S S D T +W + R
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 130 SHHP-IQCCLDSKDSQIFC-GSSDGKIYKWQLVDSS--QISTLIHSVGKAV----VNSLC 181
H+ ++C S DS + G +G+I W + + + + G A V LC
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLC 1190
Query: 182 SHPTRKHIMSACGNNVKLWTA 202
P K ++SA G +K W
Sbjct: 1191 FSPDGKMLISA-GGYIKWWNV 1210
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS 72
Q ++ R + S L+ D +K+WN K + H V + D+++ +S
Sbjct: 1050 QETVKDFRL-LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSS 1108
Query: 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
++DK+ +W P+ R H V C F+ DS+++ +G + + +W+V
Sbjct: 1109 TSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 111/296 (37%), Gaps = 63/296 (21%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113
H V A + D +IAS +DK++ +++ TG+ + + H +V C F+ D +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173
+ S D V +W+ S L+H+
Sbjct: 680 TCSVDKKVKIWN-------------------------------------SMTGELVHTYD 702
Query: 174 KAVVNSLCSHPTRK--HIMSACGNN---VKLWTAEED------YGQEPIVDAC-FTRDCQ 221
+ C H T H++ A G++ +KLW + +G V+ C F+ D +
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 222 CILTCSTDECLRLFDKATGE----------LLEEYKGHKSGDFRIECCLDSKDSQIFCGS 271
+ +CS D L+L+D + L + + ++CC S D +
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA 822
Query: 272 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN--VKLWTAE 325
+ KI+ + + +S + IH+ G C + H+ + V+LW +
Sbjct: 823 AKNKIFLFD-IHTSGLLGEIHT-GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTD 876
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 140/320 (43%), Gaps = 29/320 (9%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVNDATAACDSSQIASGASDKSV 79
++ DG+ + +K I L++ + + LL + + GH + + + S V
Sbjct: 812 WSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCV 870
Query: 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK---SRSHHPIQC 136
LW + V R H S V V F+ D S ++ S D T+ +W+ K S ++
Sbjct: 871 ELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQ 930
Query: 137 CLDS--KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194
+D +++++ + D I + QL++ + I + +A V+ C P ++I
Sbjct: 931 EVDVVFQENEVMVLAVD-HIRRLQLINGR--TGQIDYLTEAQVSCCCLSPHLQYIAFGDE 987
Query: 195 N---------NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245
N N +++ + + ++ + FT D + +++ S D +++++ + +
Sbjct: 988 NGAIEILELVNNRIFQSRFQH-KKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-F 1045
Query: 246 YKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
+GH+ DFR+ K+S++ S DG + W ++ ++ + G V++
Sbjct: 1046 LRGHQETVKDFRL-----LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQG-TVLSCDI 1099
Query: 304 SHPTRKHIMSACGNNVKLWT 323
SH K ++ K+W+
Sbjct: 1100 SHDATKFSSTSADKTAKIWS 1119
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 70
C QG + + + D + + +DK K+W+ L L GH V + + DS+ +
Sbjct: 1089 CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 71 ASGASDKSVILWEVTTGQ------PVRR--WREHASKVTCVKFNEDSSVVISG 115
A+G + + +W V+ G+ P+ H VT + F+ D ++IS
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 29 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKSVILWEVTT 86
LT D LW+ LL+++ GH +V D + + SG DK ++W++ +
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146
GQ V+ + H S V V++ SGS D T ++D+++ I SK+S IF
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY----SKESIIF 285
Query: 147 CGSS---------------DGKIYKWQLVDSSQISTLI 169
SS D I W ++ S++S L
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 43/202 (21%)
Query: 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-VKSRSHHPI--------QCCLDSK 141
R + H +KV C+ + +D ++S SQD V++WD + H + C
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 142 DSQIFCGSSDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199
I CG D K +Y + ++ SV + +SAC
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-----------MHTNYLSACS----- 161
Query: 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259
FT ILT S D L+D +G+LL+ + GH + ++
Sbjct: 162 ----------------FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205
Query: 260 LDSKDSQIFCGSSDGKIYKWQL 281
+ G D K W +
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDM 227
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--NEDSSVVISGSQDNTVMMWDV 126
QI + + D + LW+V +GQ ++ + H + V C+ +E + +SG D M+WD+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 127 KS 128
+S
Sbjct: 228 RS 229
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA--HEVNDAT 62
CVQ + + + +VR+ G + D +L++ + + Y + +
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ + +G +D ++ +W+V G V H ++V+ ++ + D + SGS D+T+
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 123 MW 124
+W
Sbjct: 352 VW 353
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 93/278 (33%), Gaps = 47/278 (16%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV----- 103
+T GH ++V D +I S + D VI+W+ T +EHA + C
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----KEHAVTMPCTWVMAC 112
Query: 104 KFNEDSSVVISGSQDNTVMMW---------------DVKSRSHHPIQCCLDSKDSQIFCG 148
+ + G DN ++ V +++ C + D QI
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 149 SSDGKIYKWQLVDSSQISTLIHSVGKAV--VNSLCSHPTRKHIMSACGNNVKLWTAEE-- 204
S DG W V+S Q+ H G V ++ S + C +W
Sbjct: 173 SGDGTCALWD-VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 205 -----DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK------GHKSGD 253
+ + + + + S D RL+D + Y G S D
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291
Query: 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
F + L +F G +D I W ++ S++S L
Sbjct: 292 FSLSGRL------LFAGYNDYTINVWDVLKGSRVSILF 323
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 51/285 (17%)
Query: 6 VQTIDCKQGAIRAVR-FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+Q I C+ + V D ++ D IK+W+ + GH V
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQ 180
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
D I +G+SD +V +W+V TG+ + H V ++FN + ++++ S+D ++ +W
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238
Query: 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184
D+ S P L ++ G H VV+
Sbjct: 239 DMAS----PTDITL----RRVLVG---------------------HRAAVNVVDF----- 264
Query: 185 TRKHIMSACGNN-VKLWT------AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237
K+I+SA G+ +K+W G + + AC + +++ S+D +RL+D
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
G L +GH+ + C+ + +I G+ DGKI W LV
Sbjct: 324 ECGACLRVLEGHEE----LVRCIRFDNKRIVSGAYDGKIKVWDLV 364
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 215 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274
C D Q I++ D ++++DK T E GH CL + I GSSD
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL----CLQYDERVIITGSSDS 193
Query: 275 KIYKWQLVDSSQISTLIH 292
+ W + ++TLIH
Sbjct: 194 TVRVWDVNTGEMLNTLIH 211
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 126/313 (40%), Gaps = 53/313 (16%)
Query: 16 IRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDS 67
+ A+ +D + + S DK I LW ++ K YG GH+H V D + D
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDD--KAYGVAQRRLTGHSHFVEDVVLSSDG 442
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127
SG+ D + LW++ G RR+ H V V F+ D+ ++S S+D T+ +W+
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
Query: 128 SRSHHPI--------------QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL----- 168
+ I + ++ I S D + W L + STL
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 169 -IHSVGKAVVNSLCSHPTRKHIMSA--CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225
+ +V + SLC+ + ++ KL++ E + I CF+ + + L
Sbjct: 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPN-RYWLC 618
Query: 226 CSTDECLRLFDKATGELLEEYK-------------GHKSGDFRIECCL----DSKDSQIF 268
+T+ ++++D + ++E+ K G + ++ C + S +F
Sbjct: 619 AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678
Query: 269 CGSSDGKIYKWQL 281
G +DG I W +
Sbjct: 679 SGYTDGVIRVWGI 691
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 117/297 (39%), Gaps = 54/297 (18%)
Query: 46 LLLK-TYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTT-----GQPVRRWREHAS 98
L+LK T H V D++ I AS DKS+ILW++T G RR H+
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 99 KVTCVKFNEDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFCGS 149
V V + D +SGS D + +WD+ + + + + QI S
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491
Query: 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE 209
D I W +++G+ C K+ +S G + W + +
Sbjct: 492 RDRTIKLW------------NTLGE------C-----KYTISEGGEGHRDWVSCVRFSPN 528
Query: 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-F 268
+ I++ S D+ +++++ + +L GH + S D +
Sbjct: 529 TL--------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG---YVSTVAVSPDGSLCA 577
Query: 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325
G DG + W L + ++ +L +V+++LC P R + +A + +K+W E
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSL---EANSVIHALCFSPNRYWLCAATEHGIKIWDLE 631
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 109 SSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYK 156
+ V G DN ++++K+R + + CC D+QI S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP 210
W + Q +T G + SL + TR + AC + KLW E G E
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 211 IVDA-CFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
++A CF + T S D RLFD + L Y
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + RF +D + +T D LW+ T+ GH +V + A D+ SG
Sbjct: 144 GYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------ 127
A D S LW+V G + + H S + + F + + +GS D T ++D++
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 128 SRSHHPIQCCLDS 140
+ SH I C + S
Sbjct: 263 TYSHDNIICGITS 275
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E C QT + I A+ F +G+ T D +L++ + L TY H + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
Query: 62 TAACDSSQ---IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
T+ S + +G D + +W+ H ++V+C+ +D V +GS D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 119 NTVMMWD 125
+ + +W+
Sbjct: 334 SFLKIWN 340
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
E GH + CC D+QI S D W + Q +T G + SL
Sbjct: 137 RELAGHTG---YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL- 192
Query: 304 SHPTRKHIMSACGNNVKLWTAEE 326
+ TR + AC + KLW E
Sbjct: 193 APDTRLFVSGACDASAKLWDVRE 215
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 109 SSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYK 156
+ V G DN ++++K+R + + CC D+QI S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP 210
W + Q +T G + SL + TR + AC + KLW E G E
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 211 IVDA-CFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
++A CF + T S D RLFD + L Y
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + RF +D + +T D LW+ T+ GH +V + A D+ SG
Sbjct: 144 GYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------ 127
A D S LW+V G + + H S + + F + + +GS D T ++D++
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 128 SRSHHPIQCCLDS 140
+ SH I C + S
Sbjct: 263 TYSHDNIICGITS 275
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E C QT + I A+ F +G+ T D +L++ + L TY H + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
Query: 62 TAACDSSQ---IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
T+ S + +G D + +W+ H ++V+C+ +D V +GS D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 119 NTVMMWD 125
+ + +W+
Sbjct: 334 SFLKIWN 340
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
E GH + CC D+QI S D W + Q +T G + SL
Sbjct: 137 RELAGHTG---YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL- 192
Query: 304 SHPTRKHIMSACGNNVKLWTAEE 326
+ TR + AC + KLW E
Sbjct: 193 APDTRLFVSGACDASAKLWDVRE 215
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 109 SSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYK 156
+ V G DN ++++K+R + + CC D+QI S D
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP 210
W + Q +T G + SL + TR + AC + KLW E G E
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 211 IVDA-CFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
++A CF + T S D RLFD + L Y
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + RF +D + +T D LW+ T+ GH +V + A D+ SG
Sbjct: 155 GYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 213
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------ 127
A D S LW+V G + + H S + + F + + +GS D T ++D++
Sbjct: 214 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273
Query: 128 SRSHHPIQCCLDS 140
+ SH I C + S
Sbjct: 274 TYSHDNIICGITS 286
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E C QT + I A+ F +G+ T D +L++ + L TY H + +
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 284
Query: 62 TAACDSSQ---IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
T+ S + +G D + +W+ H ++V+C+ +D V +GS D
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Query: 119 NTVMMWD 125
+ + +W+
Sbjct: 345 SFLKIWN 351
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
E GH + CC D+QI S D W + Q +T G + SL
Sbjct: 148 RELAGHTG---YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL- 203
Query: 304 SHPTRKHIMSACGNNVKLWTAEE 326
+ TR + AC + KLW E
Sbjct: 204 APDTRLFVSGACDASAKLWDVRE 226
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 22 NVDGSYCLTCGSDKKIKLW-------NPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 74
N D ++ DK + +W N Y + K GH H V+D + ++ S +
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
DK++ LW++ TG +R+ H S+V V F+ D+ ++S + + +W++
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDAT 62
+CV+ + A + F Y + G D ++K+WN N ++ T+ H VN +
Sbjct: 166 SCVRYSPIMKSANKVQPF---APYFASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLS 220
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ + IA+G DK +++W++ +R + S + + FN V G+ D V
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVK 279
Query: 123 MWDVKSRSHHPIQCCLDSK 141
++++ ++S P+ C ++++
Sbjct: 280 IFNLMTQSKAPV-CTIEAE 297
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 104 KFNEDSSVVISGSQDNTVMMWD----------------VKSRSHHPIQCCLDSKDSQIFC 147
K NEDS V+ISGS+D TVM+W + +H L ++
Sbjct: 34 KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93
Query: 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLW 200
S D + W L + + ++ V S+ P + I+SA +KLW
Sbjct: 94 SSWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 66 DSSQIASGASDKSVILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
DS + SG+ DK+V++W++ G P + H V+ + ++++ IS S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 119 NTVMMWDVKSRSHHP---------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167
T+ +WD+++ + + + QI ++ +I W ++ + S+
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
+ D +++ ++ S D+ LRL+D TG + + GH+S + + D++ QI
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR--QILSA 136
Query: 271 SSDGKIYKWQLVDSSQIST 289
++ +I W ++ + S+
Sbjct: 137 GAEREIKLWNILGECKFSS 155
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 112/285 (39%), Gaps = 44/285 (15%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
IR+V F+ DG + T D+ I++W+ ++ GH ++ ++ SG+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV--------- 126
D++V +W++ TGQ T D + +GS D V +WD
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 127 ----KSRSHHP--IQCCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
+S + H + + ++D Q + GS D + W L +++ S K +
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-----KSDSKTPNSG 300
Query: 180 LCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239
C + +D+ ++ T++ + IL+ S D + +DK +
Sbjct: 301 TCE---------------VTYIGHKDF----VLSVATTQNDEYILSGSKDRGVLFWDKKS 341
Query: 240 GELLEEYKGHKSGDFRIECCLDS---KDSQIFC-GSSDGKIYKWQ 280
G L +GH++ + S + +F GS D K W+
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWN------------PYRNLLLKTYGGHAHEVNDAT 62
++ +V F DG ++ D+ +KLWN P TY GH V
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS------VVISGS 116
+ I SG+ D+ V+ W+ +G P+ + H + V V SS V +GS
Sbjct: 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377
Query: 117 QDNTVMMWDVK 127
D +W K
Sbjct: 378 GDCKARIWKYK 388
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHE 57
C T+ + G DG Y D+ +++W+ L++ GH
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 58 VNDATAACDSSQIASGASDKSVILWEV------------TTGQPVRRWREHASKVTCVKF 105
V D + SG+ D+SV LW + +G + H V V
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 106 NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152
++ ++SGS+D V+ WD K S +P+ ++S I ++G
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKK--SGNPLLMLQGHRNSVISVAVANG 363
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
I CF+ D + + T + D +R++D +++ +GH+ + ++ S D ++ G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD-YFPSGD-KLVSG 183
Query: 271 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEEDY 328
S D + W L + Q S L S+ V S K+I + + V++W +E +
Sbjct: 184 SGDRTVRIWDL-RTGQCS-LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 49/237 (20%)
Query: 95 EHASKVTCVKFNEDSSVVISGSQDNT-----------VMMWDVKSRSHHPIQCCLDSKDS 143
+H S V CVKF+ D + +G T + D + + P S S
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 144 -----QIFCGSSDGK----------IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 188
+ C S DGK I W +++ +I ++ + + SL P+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIY-SLDYFPSGDK 179
Query: 189 IMSACGN-NVKLWTAEEDYGQ----EPIVDACFT-----RDCQCILTCSTDECLRLFDKA 238
++S G+ V++W GQ I D T D + I S D +R++D
Sbjct: 180 LVSGSGDRTVRIWDLRT--GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 239 TGELLEEYK-------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
TG L+E GHK + + D + + GS D + W L +++ S
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKS 292
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 109 SSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYK 156
+ V G DN ++++K+R + + CC D+QI S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP 210
W + Q +T G + SL + TR + AC + KLW E G E
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 211 IVDA-CFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
++A CF + T S D RLFD + L Y
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + RF +D + +T D LW+ T+ GH +V + A D+ SG
Sbjct: 144 GYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------ 127
A D S LW+V G + + H S + + F + + +GS D T ++D++
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 128 SRSHHPIQCCLDS 140
+ SH I C + S
Sbjct: 263 TYSHDNIICGITS 275
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E C QT + I A+ F +G+ T D +L++ + L TY H + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
Query: 62 TAACDSSQ---IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
T+ S + +G D + +W+ H ++V+C+ +D V +GS D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 119 NTVMMWD 125
+ + +W+
Sbjct: 334 SFLKIWN 340
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
E GH + CC D+QI S D W + Q +T G + SL
Sbjct: 137 RELAGHTG---YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL- 192
Query: 304 SHPTRKHIMSACGNNVKLWTAEE 326
+ TR + AC + KLW E
Sbjct: 193 APDTRLFVSGACDASAKLWDVRE 215
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)
Query: 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 109 SSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYK 156
+ V G DN ++++K+R + + CC D+QI S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP 210
W + Q +T G + SL + TR + AC + KLW E G E
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 211 IVDA-CFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
++A CF + T S D RLFD + L Y
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
G + RF +D + +T D LW+ T+ GH +V + A D+ SG
Sbjct: 144 GYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------ 127
A D S LW+V G + + H S + + F + + +GS D T ++D++
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 128 SRSHHPIQCCLDS 140
+ SH I C + S
Sbjct: 263 TYSHDNIICGITS 275
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E C QT + I A+ F +G+ T D +L++ + L TY H + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
Query: 62 TAACDSSQ---IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
T+ S + +G D + +W+ H ++V+C+ +D V +GS D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 119 NTVMMWD 125
+ + +W+
Sbjct: 334 SFLKIWN 340
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303
E GH + CC D+QI S D W + Q +T G + SL
Sbjct: 137 RELAGHTG---YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL- 192
Query: 304 SHPTRKHIMSACGNNVKLWTAEE 326
+ TR + AC + KLW E
Sbjct: 193 APDTRLFVSGACDASAKLWDVRE 215
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 29/289 (10%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
+Y +T DK I++++ L GH V A + SG++D++V +W++
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIK 191
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSV--VISGSQDNTVMMWDVKSRSHHPIQ-------- 135
G + H S V C+ E ++ +++GS+DNT+ +W + S P
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 195
+++ F G G + + V + S ++ + +I+S G+
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--GH 309
Query: 196 NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 255
++++ D+ ++ +CI + S D +R++D GEL+ +GH +
Sbjct: 310 TDRIYSTIYDHERK-----------RCI-SASMDTTIRIWDLENGELMYTLQGHTA---- 353
Query: 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 304
+ L D + ++DG I W D S+ + H+ A+ S
Sbjct: 354 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 402
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
C+ + I + ++ + C++ D I++W+ L+ T GH V
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV--GLLR 359
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV-KFNEDSSVVISGSQDNTVMM 123
+ S A+D S+ W+ R++ H + ++ + F ++++SGS+ N +
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNI 416
Query: 124 WDVKS 128
++++S
Sbjct: 417 YNLRS 421
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/106 (16%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
G+ ++ D + +W+ + L GH + + + S + D ++ +W++
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
G+ + + H + V ++ ++ ++S + D ++ WD S
Sbjct: 340 ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 117/260 (45%), Gaps = 33/260 (12%)
Query: 12 KQGA-IRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---D 66
KQG+ +R V F+ D G + +T GSD+KI ++ LK V A D
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-------SQDN 119
S + A+ +D ++ +W+VTT + V++W ++ N+ VV +G S D
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDG 319
Query: 120 TVMMWD------VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173
T+ ++ +K+ S H + + I GS DG+I +W S+ +H
Sbjct: 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLI-SGSYDGRIMEWS-------SSSMHQDH 371
Query: 174 KAVVNSLCSHPTRKHIMSACGNNVKL-WTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
++ SL + +++ + + +K+ + ++G +P V + +LT D+ L
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT--NDDDL 429
Query: 233 RLFDKATGELLEEYKGHKSG 252
+ TG++++ + + G
Sbjct: 430 LILQSFTGDIIKSVRLNSPG 449
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 29/289 (10%)
Query: 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
+Y +T DK I++++ L GH V A + SG++D++V +W++
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIK 191
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSV--VISGSQDNTVMMWDVKSRSHHPIQ-------- 135
G + H S V C+ E ++ +++GS+DNT+ +W + S P
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 195
+++ F G G + V + S ++ + +I+S G+
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS--GH 309
Query: 196 NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 255
++++ D+ ++ +CI + S D +R++D GEL +GH +
Sbjct: 310 TDRIYSTIYDHERK-----------RCI-SASXDTTIRIWDLENGELXYTLQGHTA---- 353
Query: 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 304
+ L D + ++DG I W D S+ + H+ A+ S
Sbjct: 354 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 402
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
G+ ++ D + +W+ + L GH + + + S + D ++ +W++
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
G+ + H + V ++ ++ ++S + D ++ WD S
Sbjct: 340 ENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
C+ + I + ++ + C++ D I++W+ L T GH V
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV--GLLR 359
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV-KFNEDSSVVISGSQDNTVMM 123
+ S A+D S+ W+ R++ H + ++ + F ++++SGS+ N +
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNI 416
Query: 124 WDVKS 128
++++S
Sbjct: 417 YNLRS 421
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 37/262 (14%)
Query: 12 KQGA-IRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---D 66
KQG+ +R V F+ D G + +T GSD+KI ++ LK V A D
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-------SQDN 119
S + A+ +D ++ +W+VTT + V++W ++ N+ VV +G S D
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDG 319
Query: 120 TVMMWDVKSRSHHPIQCCLDSKDSQI--------FCGSSDGKIYKWQLVDSSQISTLIHS 171
T+ +++ H + + + I GS DG+I +W S+ H
Sbjct: 320 TLNFYEL---GHDEVLKTISGHNKGITALTVNPLISGSYDGRIXEWS-------SSSXHQ 369
Query: 172 VGKAVVNSLCSHPTRKHIMSACGNNVKL-WTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230
++ SL + +++ + + +K+ + ++G +P V + +LT D+
Sbjct: 370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT--NDD 427
Query: 231 CLRLFDKATGELLEEYKGHKSG 252
L + TG++++ + + G
Sbjct: 428 DLLILQSFTGDIIKSVRLNSPG 449
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 29 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88
LT +DK IKLW + ++KT+ G ++V A D S ++D + L + TG
Sbjct: 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD 216
Query: 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
+R + H S V C+K + +V G +D TV +W
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 35/208 (16%)
Query: 68 SQIASGASDKSVILWE---------VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
S++AS + D +V LW V TGQ + V ++ + +++ G +D
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF---------LNSVCYDSEKELLLFGGKD 80
Query: 119 ---NTVMMWDVKSR-------SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168
N V ++ H C L +D + GS D W+ + S + L
Sbjct: 81 TXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNL 138
Query: 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG-----QEPIVDACFTRDCQCI 223
+ S K + ++ +KLW ++ +V D
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHF 198
Query: 224 LTCSTDECLRLFDKATGELLEEYKGHKS 251
++CS D ++L D TG++L Y+GH+S
Sbjct: 199 ISCSNDGLIKLVDXHTGDVLRTYEGHES 226
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82
VD + ++C +D IKL + + +L+TY GH V + I S D++V +W
Sbjct: 193 VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY-CIKLLPNGDIVSCGEDRTVRIW 251
Query: 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
G + A + V + +++ GS DN V ++
Sbjct: 252 SKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 101/259 (38%), Gaps = 20/259 (7%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ +T + ++ + F+ + LT +++LWN + +++ V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ I G+ D + ++ TG+ V + H + + + V+SGS D T
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 121 VMMWDVKSR---------SHHPIQC-CLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLI 169
V +W+ ++ H + C + KD F G D + W L S+ TL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 170 HSVGKAV-VNSLCSHPTRKHIMSACGN-NVKLW-------TAEEDYGQEPIVDACFTRDC 220
+ V P + ++++A + +K+W A + + A F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 221 QCILTCSTDECLRLFDKAT 239
I++ S D L++++ +T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCST 228
V + HPT +++ V+LW E + P+ F I+ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--GKIYKWQ 280
D +R+F+ TGE + +++ H D+ + + GS D K++ W+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 101/259 (38%), Gaps = 20/259 (7%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ +T + ++ + F+ + LT +++LWN + +++ V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ I G+ D + ++ TG+ V + H + + + V+SGS D T
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 121 VMMWDVKSR---------SHHPIQC-CLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLI 169
V +W+ ++ H + C + KD F G D + W L S+ TL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 170 HSVGKAV-VNSLCSHPTRKHIMSACGN-NVKLW-------TAEEDYGQEPIVDACFTRDC 220
+ V P + ++++A + +K+W A + + A F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 221 QCILTCSTDECLRLFDKAT 239
I++ S D L++++ +T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCST 228
V + HPT +++ V+LW E + P+ F I+ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--GKIYKWQ 280
D +R+F+ TGE + +++ H D+ + + GS D K++ W+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 102/260 (39%), Gaps = 22/260 (8%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ +T + ++ + F+ + LT +++LWN + +++ V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ I G+ D + ++ TG+ V + H + + + V+SGS D T
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 121 VMMWD----------VKSRSHHPIQCCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLI 169
V +W+ + H + + KD F G D + W L S+ TL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 170 HSVGKAVVNSLCSHPT--RKHIMSACGN-NVKLW-------TAEEDYGQEPIVDACFTRD 219
+ VN + +P + ++++A + +K+W A + + A F
Sbjct: 181 TGQERG-VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 220 CQCILTCSTDECLRLFDKAT 239
I++ S D L++++ +T
Sbjct: 240 LPIIISGSEDGTLKIWNSST 259
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCST 228
V + HPT +++ V+LW E + P+ F I+ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--GKIYKWQ 280
D +R+F+ TGE + +++ H D+ + + GS D K++ W+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 104/289 (35%), Gaps = 41/289 (14%)
Query: 40 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK 99
+NP + +T GH+ +V + + I S + D +I+W T Q + H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRS----HHPIQCCLDS-------------KD 142
V F + V G D+ ++++ S++ + P+ L ++
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 143 SQIFCGSSDGKIYKWQLVDSSQISTL--------IHSVGKAVVNSLCSHPTRKHIMSACG 194
+++ GS D W + +IS V +NSL ++ I +C
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN---MFISGSCD 227
Query: 195 NNVKLW-------TAEEDYGQEPIVDAC-FTRDCQCILTCSTDECLRLFDKATGELLEEY 246
V+LW +G E +++ F D Q T S D RLFD TG L+ Y
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287
Query: 247 -----KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290
+ +F G S+G Y W + + + L
Sbjct: 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-------V 58
V+T +G I +V+F DG T D +L++ L+ Y V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 59 NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW----REHASKVTCVKFNEDSSVVIS 114
+ + +G S+ +W+ + V H +++C+ + D S + +
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 115 GSQDNTVMMW 124
GS D + +W
Sbjct: 362 GSWDKNLKIW 371
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWN----PYRNLLL---KTYGGHAHEVND-ATA 63
K+G + N++G Y L+ D I LW+ P + ++ + GH V D A
Sbjct: 182 KEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240
Query: 64 ACDSSQIASGASDKSVILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDN 119
S S A D+ +++W+ T +P H ++V C+ FN S ++ +GS D
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 120 TVMMWDVKS 128
TV +WD+++
Sbjct: 301 TVALWDLRN 309
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT- 62
T+D + + FN + L GS DK + LW+ RNL LK ++ H E+
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQW 329
Query: 63 AACDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNED 108
+ + + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 389
Query: 109 SSVVI-SGSQDNTVMMWDV 126
+I S S+DN + +W +
Sbjct: 390 EPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWN----PYRNLLL---KTYGGHAHEVND-ATA 63
K+G + N++G Y L+ D I LW+ P + ++ + GH V D A
Sbjct: 184 KEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 242
Query: 64 ACDSSQIASGASDKSVILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDN 119
S S A D+ +++W+ T +P H ++V C+ FN S ++ +GS D
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 120 TVMMWDVKS 128
TV +WD+++
Sbjct: 303 TVALWDLRN 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT- 62
T+D + + FN + L GS DK + LW+ RNL LK ++ H E+
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQW 331
Query: 63 AACDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNED 108
+ + + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 332 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391
Query: 109 SSVVI-SGSQDNTVMMWDV 126
+I S S+DN + +W +
Sbjct: 392 EPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWN----PYRNLLL---KTYGGHAHEVND-ATA 63
K+G + N++G Y L+ D I LW+ P + ++ + GH V D A
Sbjct: 186 KEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 244
Query: 64 ACDSSQIASGASDKSVILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDN 119
S S A D+ +++W+ T +P H ++V C+ FN S ++ +GS D
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 120 TVMMWDVKS 128
TV +WD+++
Sbjct: 305 TVALWDLRN 313
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT- 62
T+D + + FN + L GS DK + LW+ RNL LK ++ H E+
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQW 333
Query: 63 AACDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNED 108
+ + + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 334 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393
Query: 109 SSVVI-SGSQDNTVMMWDV 126
+I S S+DN + +W +
Sbjct: 394 EPWIICSVSEDNIMQVWQM 412
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+ T++ IR++ F+ D +T D IK+++ L T GHA V +
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
D + S +SDKSV +W+V T V + +H +V VK+N + S ++S D + ++
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 125 D 125
D
Sbjct: 318 D 318
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 67
++D + I ++ ++ DG Y + D I +++ LL T GHA + T + DS
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127
+ + + D + +++V HAS V V F D + +S S D +V +WDV
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 128 SRS 130
+R+
Sbjct: 279 TRT 281
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 107 EDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFCGSS--DGKIY 155
E+S V++GS D+ V +W + H +D + SS D I
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG----NNVKLWTAEEDYGQEP- 210
W L + QI ++ G +L P +++ + N + + +++Y +
Sbjct: 106 LWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 211 ---IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267
I+ ++ D + + + + D + +FD ATG+LL +GH I S DSQ+
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQL 220
Query: 268 FCGSSDG---KIYKWQ 280
+SD KIY Q
Sbjct: 221 LVTASDDGYIKIYDVQ 236
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMM 123
+S + +G+ D V +W+ + +W H V V + + S S D + +
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 124 WD------VKSRSHHPIQC--CLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGK 174
WD +KS P+ S DSQ G+ GK+ + V+S + + + GK
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG-VESGKKEYSLDTRGK 165
Query: 175 AVVNSLCSHPTRKHIMSACGNNV---------KLWTAEEDYGQEPIVDACFTRDCQCILT 225
++ S+ P K++ S + + KL E + PI F+ D Q ++T
Sbjct: 166 FIL-SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVT 223
Query: 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261
S D ++++D L GH S + C D
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41
TCV T Q + V++N +GS ++ G D++I +++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 29 LTCGSDKKIKLWNPYRN--LLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEV 84
L ++LW N L++ + + H+ V+ + +Q SG+ D + +W++
Sbjct: 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156
Query: 85 TTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK-----------SRSHH 132
+ +R HA++VTCV + SV +S S+DN +++WD + + +
Sbjct: 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL 216
Query: 133 PIQCCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHS 171
P + S++F G +G + LVD+ S ++ S
Sbjct: 217 PTSLAWHPQQSEVFVFGDENGTV---SLVDTKSTSCVLSS 253
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN-DATAACDSSQIASGASDKSVILWE 83
G+ ++ D IK+W+ + ++L +Y HA +V A + S S + D ++LW+
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 84 VTTGQPVRRWREHASKVTCVK----------FNEDSSVVISGSQDNTVMMWDVKSRS 130
+P AS++ C + S V + G ++ TV + D KS S
Sbjct: 199 TRCPKP-------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 102/260 (39%), Gaps = 22/260 (8%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ +T + ++ + F+ + LT ++++WN + +++ V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ I G+ D + ++ TG+ V + H + + + V+SGS D T
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 121 VMMWD----------VKSRSHHPIQCCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLI 169
V +W+ + H + + KD F G D + W L S+ TL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 170 HSVGKAVVNSLCSHPT--RKHIMSACGN-NVKLW-------TAEEDYGQEPIVDACFTRD 219
+ VN + +P + ++++A + +K+W A + + A F
Sbjct: 181 TGQERG-VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 220 CQCILTCSTDECLRLFDKAT 239
I++ S D L++++ +T
Sbjct: 240 LPIIISGSEDGTLKIWNSST 259
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCST 228
V + HPT +++ V++W E + P+ F I+ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--GKIYKWQ 280
D +R+F+ TGE + +++ H D+ + + GS D K++ W+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 6 VQTIDC--KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
V +DC + IR+ + DG + G + +W+ L E+ +
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD-----LAAPTPRIKAELTSSAP 142
Query: 64 AC-------DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS 116
AC DS S SD ++ +W++ VR+++ H +C+ + D + + +G
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 117 QDNTVMMWDVK 127
DNTV WD++
Sbjct: 203 LDNTVRSWDLR 213
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 74
A A+ + D C +C SD I +W+ + L++ + GH + + D +++ +G
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 75 SDKSVILWEVTTGQPVRR 92
D +V W++ G+ +++
Sbjct: 203 LDNTVRSWDLREGRQLQQ 220
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYG---GHAHEVNDATAACD-S 67
G + + F DG + LT G+D +++LWN L YG ++ + T +C S
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
S+ ++ ++ V +G+ + + H V C F + + SGS+D ++ W
Sbjct: 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 53/270 (19%)
Query: 34 DKKIKLWNP-------YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86
DK +K+W+ N Y H V +T C +A G V L ++ +
Sbjct: 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPV--STKHC---LVAVGTRGPKVQLCDLKS 175
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145
G + H ++ V ++ ++ + S D+ V +WDV+ S CL + D
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS-----GCLITLDQH- 229
Query: 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS-ACGNNVKLWTAEE 204
+GK K Q V+S+ ++ VN LC H+++ N ++LW +
Sbjct: 230 -----NGK--KSQAVESA------NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Query: 205 DYGQEPIVD---AC--------FTRDCQC---ILTCSTDECLRLFDKATGELLEEYKGHK 250
G+ +V+ C FT C C + + ++ +GE + KGH
Sbjct: 277 --GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334
Query: 251 SGDFRIECC-LDSKDSQIFCGSSDGKIYKW 279
++CC S +++ GS D I W
Sbjct: 335 K---TVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG---SDKKIKLWNPYRNLLLKTYGGHAHEVN 59
+ +QT QGA++AV + S L G SD+ I++WN L H+ +
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 60 DATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ I+ G + +++W+ T V + H S+V + + D + V S + D
Sbjct: 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305
Query: 119 NTVMMW 124
T+ +W
Sbjct: 306 ETLRLW 311
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 103
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 104 KFNEDSSVVIS---GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160
+ S V++ G+ D + +W+V S + CL + D+
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAVDAH---------------- 240
Query: 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLW-------TAEEDYGQEP 210
SQ+ +++ S P K ++S G N + +W AE
Sbjct: 241 --SQVCSILWS------------PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 286
Query: 211 IVDACFTRDCQCILTCSTDECLRLF 235
++ + D + + + DE LRL+
Sbjct: 287 VLSLTMSPDGATVASAAADETLRLW 311
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 74
+ V++N +G +C D +W L T GH + C + +G+
Sbjct: 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS 93
Query: 75 SDKSVILWEVTTGQPVRRWR 94
+D S+ LW+V+ GQ V W+
Sbjct: 94 ADYSIKLWDVSNGQCVATWK 113
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 134
W H +KV CV ++ D+ + +GS DN+V++W++ S HPI
Sbjct: 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNP--------YRNLLLKTYGGHAHEVNDATAACDS 67
+ +VR+N DGS + G D I L+N + + LK H+ V T + D
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDG 251
Query: 68 SQIASGASDKSVILWEVTT 86
++IAS ++DK++ +W V T
Sbjct: 252 TKIASASADKTIKIWNVAT 270
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYGGHAHEVNDAT 62
V+TI I +V F+ +G++ + +K+ ++ N L ++ H +V +
Sbjct: 485 VKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543
Query: 63 AACDSSQIASGASDKSVILWEVT--TGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDN 119
+ D+ ++A+G+ D SVI+W + + P+ HA S V V + ++++V +G QD+
Sbjct: 544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QDS 602
Query: 120 TVMMWDVK 127
+ W+V
Sbjct: 603 NIKFWNVP 610
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKK---IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA 71
A+ +V F + + GSD I P++ T+G H V+ D S A
Sbjct: 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFA 206
Query: 72 SGASDKSVILWEVTTGQPVRRWRE-------HASKVTCVKFNEDSSVVISGSQDNTVMMW 124
S D +++L+ G + + H+ V + ++ D + + S S D T+ +W
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Query: 125 DVKS 128
+V +
Sbjct: 267 NVAT 270
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG---SDKKIKLWNPYRNLLLKTYGGHAHEVN 59
+ +QT QGA++AV + S L G SD+ I++WN L H+ +
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 60 DATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ I+ G + +++W+ T V + H S+V + + D + V S + D
Sbjct: 326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Query: 119 NTVMMW 124
T+ +W
Sbjct: 386 ETLRLW 391
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 103
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 104 KFNEDSSVVIS---GSQDNTVMMWDV 126
+ S V++ G+ D + +W+V
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
I +V + +G+Y S +++LW+ + L+ H+ V + + +S ++SG+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV--GSLSWNSYILSSGSR 207
Query: 76 DKSVILWEVTTGQ-PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-- 132
+ +V + V H+ +V +++ D + SG DN V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 133 PIQ--------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL-IHSVGKAVV 177
P+Q C S G+SD I W + + +S + HS V
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----QV 323
Query: 178 NSLCSHPTRKHIMSACG---NNVKLW-------TAEEDYGQEPIVDACFTRDCQCILTCS 227
S+ P K ++S G N + +W AE ++ + D + + +
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 228 TDECLRLF 235
DE LRL+
Sbjct: 384 ADETLRLW 391
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVNDAT-A 63
K+G + N+ G + L+ D I LW+ P ++ + GH V D +
Sbjct: 178 KEGYGLSWNPNLSG-HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWH 236
Query: 64 ACDSSQIASGASDKSVILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDN 119
S S A D+ +++W+ T +P H ++V C+ FN S ++ +GS D
Sbjct: 237 LLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK 296
Query: 120 TVMMWDVKS 128
TV +WD+++
Sbjct: 297 TVALWDLRN 305
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT- 62
++D + + FN + L GS DK + LW+ RNL LK ++ H E+
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQW 325
Query: 63 AACDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNED 108
+ + + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 109 SSVVI-SGSQDNTVMMW 124
VI S S+DN + +W
Sbjct: 386 EPWVICSVSEDNIMQVW 402
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG---SDKKIKLWNPYRNLLLKTYGGHAHEVN 59
+ +QT QGA++AV + S L G SD+ I++WN L H+ +
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 60 DATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ I+ G + +++W+ T V + H S+V + + D + V S + D
Sbjct: 337 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396
Query: 119 NTVMMW 124
T+ +W
Sbjct: 397 ETLRLW 402
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 103
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 104 KFNEDSSVVIS---GSQDNTVMMWDV 126
+ S V++ G+ D + +W+V
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
I +V + +G+Y S +++LW+ + L+ H+ V + + +S ++SG+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV--GSLSWNSYILSSGSR 218
Query: 76 DKSVILWEVTTGQ-PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-- 132
+ +V + V H+ +V +++ D + SG DN V +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 133 PIQ--------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL-IHSVGKAVV 177
P+Q C S G+SD I W + + +S + HS V
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----QV 334
Query: 178 NSLCSHPTRKHIMSACG---NNVKLW-------TAEEDYGQEPIVDACFTRDCQCILTCS 227
S+ P K ++S G N + +W AE ++ + D + + +
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 228 TDECLRLF 235
DE LRL+
Sbjct: 395 ADETLRLW 402
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ--IASG 73
++ + DG+ ++ G D +K+W+ + +LK+Y H+ EVN AAC S
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSC 200
Query: 74 ASDKSVILWEVTTGQPVRR 92
D ++LW+ +P R
Sbjct: 201 GEDGRILLWDTRKPKPATR 219
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 29 LTCGSDKKIKLWN--PYRNLLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEV 84
L ++LW +LL+ + + H+ V + D +Q SG D SV +W++
Sbjct: 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 85 TTGQPVRRWREHASKVTCVKF-NEDSSVVISGSQDNTVMMWDV-KSRSHHPIQCCL---- 138
+ ++ + H+S+V CV ++ +S +D +++WD K + I C
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228
Query: 139 -------DSKDSQIFCGSSDGKIYKWQL--VDSSQISTLIHS 171
KD CG G + + DS+Q S +HS
Sbjct: 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHS 269
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 30/251 (11%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
+ +V+++ DGS+ + + +++ L+T GH V + + ++SG+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV--GCLSWNRHVLSSGSR 194
Query: 76 DKSVILWEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS------ 128
++ +V + + H+S+V + + D + SG DN V +WD +S
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 129 RSHHPIQ------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 182
+++H C S G+ D +I+ W ++++T+ + V SL
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIW 311
Query: 183 HPTRKHIMSACG---NNVKLW-------TAEEDYGQEP--IVDACFTRDCQCILTCSTDE 230
P K IMS G NN+ +W T + D ++ + + D + + T ++DE
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 231 CLRLFDKATGE 241
L+ + G+
Sbjct: 372 NLKFWRVYDGD 382
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 53 GHAHEVND-ATAACDSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVK 104
GH V D A + + IASG+ D +V++WE+ G +PV H +V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 105 FNEDS-SVVISGSQDNTVMMWDV 126
++ + +V++S DN +++WDV
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 209 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 266
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 267 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 53 GHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHASKVTCVKFNED-- 108
H ++DA ++A+ +SDK++ ++EV T + + H V V +
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 109 SSVVISGSQDNTVMMWD-------------VKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ S S D VM+W V S S + +Q + SSDGK+
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 156 KWQLVDSSQISTLI---HSVGKAVVNSLCSHP--------------TRKHIMSACGNNVK 198
+ ++ S +I H++G VNS P +RK + N VK
Sbjct: 127 VVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 199 LWTAEED 205
+W D
Sbjct: 184 IWKYNSD 190
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 208 QEPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDS 265
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 68
Query: 266 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 53 GHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHASKVTCVKFNED-- 108
H ++DA ++A+ +SDK++ ++EV T + + H V V +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 109 SSVVISGSQDNTVMMWD-------------VKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ S S D V++W V S S + +Q + SSDGK+
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 156 KWQLVDSSQISTLI---HSVGKAVVNSLCSHP--------------TRKHIMSACGNNVK 198
+ ++ S +I H++G VNS P +RK + N VK
Sbjct: 127 VVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 199 LWTAEED 205
+W D
Sbjct: 184 IWKYNSD 190
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 208 QEPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDS 265
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 70
Query: 266 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 53 GHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHASKVTCVKFNED-- 108
H ++DA ++A+ +SDK++ ++EV T + + H V V +
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 109 SSVVISGSQDNTVMMWD-------------VKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ S S D V++W V S S + +Q + SSDGK+
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 156 KWQLVDSSQISTLI---HSVGKAVVNSLCSHP--------------TRKHIMSACGNNVK 198
+ ++ S +I H++G VNS P +RK + N VK
Sbjct: 129 VVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 199 LWTAEED 205
+W D
Sbjct: 186 IWKYNSD 192
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/134 (17%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-----YRNLLLKTYGGHAHEVN 59
+ ++ + I +V++N DG++ ++ + LWN ++ LK GG +
Sbjct: 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200
Query: 60 DATAA---------CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 110
+ + D + ++ ++++T P + H ++ ++FN+ +
Sbjct: 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260
Query: 111 VVISGSQDNTVMMW 124
+++S S D T+ +W
Sbjct: 261 LLLSASDDGTLRIW 274
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE--LLEEYKGHKSGDFRIEC 258
T+ ED + +D TR + TCS+D +++FD G L+ + +GH+ +++
Sbjct: 10 TSHEDMIHDAQMDYYGTR----LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAW 65
Query: 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 318
+ + S D K+ W+ + + + H+ + VNS+C P ++ ACG++
Sbjct: 66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNED--S 109
H ++DA +++A+ +SD+SV +++V G + R H V V +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 110 SVVISGSQDNTVMMWDVKS----RSHHPI-------QCCLDSKDSQIF--CGSSDGKIY- 155
+++ S S D V++W ++ +SH C D + CGSSDG I
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 156 -------KWQLVDSSQISTL----IHSVGKAVVNSLCSHPT-------RKHIMSACGNNV 197
+W++ + T+ + V SL HP+ ++ C N +
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 191
Query: 198 KLWTAEED 205
KLW EED
Sbjct: 192 KLWKEEED 199
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT-AA 64
+D + + FN + L GS DK + LW+ RNL LK T+ H E+ +
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 65 CDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNEDSS 110
+ + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 389
Query: 111 VVI-SGSQDNTVMMWDV 126
VI S S+DN + +W +
Sbjct: 390 WVICSVSEDNIMQIWQM 406
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 55/254 (21%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-----------RWREHASKVTC 102
H EVN A + I + + S +L T P + R R H +
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 103 VKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
+ +N + S ++S S D+TV +WD+ + G +GKI VD
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINA-------------------GPKEGKI-----VD 220
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL--WTAEEDYGQEP--IVDA--- 214
+ I T HS AVV + H + + + ++ KL W + +P +VDA
Sbjct: 221 AKAIFTG-HS---AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA 276
Query: 215 -----CFTRDCQCIL-TCSTDECLRLFDKATGEL-LEEYKGHKSGDFRIECCLDSKDSQI 267
F + IL T S D+ + L+D +L L ++ HK F++ ++ +
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETIL 335
Query: 268 FCGSSDGKIYKWQL 281
+D ++ W L
Sbjct: 336 ASSGTDRRLNVWDL 349
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 208 QEPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDS 265
E I DA + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 9 NEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 68
Query: 266 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 69 ILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 53 GHAHEVND-ATAACDSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVK 104
GH V D A + + IASG+ D +V++WE+ G +PV H +V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 105 FNEDS-SVVISGSQDNTVMMWDV 126
++ + +V++S DN +++WDV
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLK--TYGGHAHEVNDAT-AA 64
+D + + FN + L GS DK + LW+ RNL LK T+ H E+ +
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 65 CDSSQIASGASDKSVILWEVTT------------GQPVRRWRE--HASKVTCVKFNEDSS 110
+ + +AS +D+ + +W+++ G P + H +K++ +N +
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 389
Query: 111 VVI-SGSQDNTVMMW 124
VI S S+DN +W
Sbjct: 390 WVICSVSEDNIXQIW 404
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 55/254 (21%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-----------RWREHASKVTC 102
H EVN A + I + + S +L T P + R R H +
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 103 VKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
+ +N + S ++S S D+TV +WD+ + G +GKI VD
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINA-------------------GPKEGKI-----VD 220
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL--WTAEEDYGQEP--IVDA--- 214
+ I T HS AVV + H + + + ++ KL W + +P +VDA
Sbjct: 221 AKAIFTG-HS---AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTA 276
Query: 215 -----CFTRDCQCIL-TCSTDECLRLFDKATGEL-LEEYKGHKSGDFRIECCLDSKDSQI 267
F + IL T S D+ + L+D +L L ++ HK F++ ++ +
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETIL 335
Query: 268 FCGSSDGKIYKWQL 281
+D ++ W L
Sbjct: 336 ASSGTDRRLNVWDL 349
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 209 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 266
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 267 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 53 GHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHASKVTCVKFNEDS- 109
H ++DA ++A+ +SDK++ ++EV T + + H V V +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 110 -SVVISGSQDNTVMMWD-------------VKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ S S D V++W V S S + +Q + SSDGK+
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 156 KWQLVDSSQISTLI---HSVGKAVVNSLCSHP--------------TRKHIMSACGNNVK 198
+ ++ S +I H++G VNS P +RK + N VK
Sbjct: 127 VVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 199 LWTAEED 205
+W D
Sbjct: 184 IWKYNSD 190
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 95 EHASK--VTCVKFNEDSSVVISGSQDN--TVMMWDVKS---------RSHHPIQCC--LD 139
E A K ++ +K S+++ S D TV +D+++ R HP+ CC +D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192
+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 258 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 95 EHASK--VTCVKFNEDSSVVISGSQDN--TVMMWDVKS---------RSHHPIQCC--LD 139
E A K ++ +K S+++ S D TV +D+++ R HP+ CC +D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192
+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 258 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 95 EHASK--VTCVKFNEDSSVVISGSQDN--TVMMWDVKS---------RSHHPIQCC--LD 139
E A K ++ +K S+++ S D TV +D+++ R HP+ CC +D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192
+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 258 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 95 EHASK--VTCVKFNEDSSVVISGSQDN--TVMMWDVKS---------RSHHPIQCC--LD 139
E A K ++ +K S+++ S D TV +D+++ R HP+ CC +D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192
+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 258 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVND 60
C++ AI ++F+ D + L+ D ++LWN + L+ +G GH EV
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95
A +I S D S+ LW + + + + +E
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
YTC T D N GS I++ NP +K Y GH + +N+
Sbjct: 72 YTCAWTYDS----------NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 63 A-ACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 118
D + + S + D ++ LW + T V + H +V ++ ++S D
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 119 NTVMMWDVKSR 129
+++ +W + S+
Sbjct: 182 HSLKLWRINSK 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVND 60
C++ AI ++F+ D + L+ D ++LWN + L+ +G GH EV
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 161
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95
A +I S D S+ LW + + + + +E
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 196
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
YTC T D N GS I++ NP +K Y GH + +N+
Sbjct: 68 YTCAWTYDS----------NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 117
Query: 63 A-ACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 118
D + + S + D ++ LW + T V + H +V ++ ++S D
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 177
Query: 119 NTVMMWDVKSR 129
+++ +W + S+
Sbjct: 178 HSLKLWRINSK 188
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVND 60
C++ AI ++F+ D + L+ D ++LWN + L+ +G GH EV
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95
A +I S D S+ LW + + + + +E
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
YTC T D N GS I++ NP +K Y GH + +N+
Sbjct: 73 YTCAWTYDS----------NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 63 A-ACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 118
D + + S + D ++ LW + T V + H +V ++ ++S D
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182
Query: 119 NTVMMWDVKSR 129
+++ +W + S+
Sbjct: 183 HSLKLWRINSK 193
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVND 60
C++ AI ++F+ D + L+ D ++LWN + L+ +G GH EV
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95
A +I S D S+ LW + + + + +E
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
YTC T D N GS I++ NP +K Y GH + +N+
Sbjct: 72 YTCAWTYDS----------NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 63 A-ACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 118
D + + S + D ++ LW + T V + H +V ++ ++S D
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 119 NTVMMWDVKSR 129
+++ +W + S+
Sbjct: 182 HSLKLWRINSK 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVND 60
C++ AI ++F+ D + L+ D ++LWN + L+ +G GH EV
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 202
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQ 88
A +I S D S+ LW + + +
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSKR 230
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
YTC T D N GS I++ NP +K Y GH + +N+
Sbjct: 109 YTCAWTYDS----------NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 63 A-ACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 118
D + + S + D ++ LW + T V + H +V ++ ++S D
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 218
Query: 119 NTVMMWDVKSR 129
+++ +W + S+
Sbjct: 219 HSLKLWRINSK 229
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--NEDSSV 111
H V D + D S++ + + DK+ +W++++ Q ++ +H + V + + + S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSC 143
Query: 112 VISGSQDNTVMMWDVKS 128
V++GS D T+ WD +S
Sbjct: 144 VMTGSWDKTLKFWDTRS 160
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 70 IASGASDKSVILWEVT-TGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127
+ +G+ V WEV +GQ + + ++ H V V +++D S V + S D T MWD+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 128 S 128
S
Sbjct: 117 S 117
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 184 PTRKHIMSACGNNVKLWTAEEDYGQE----------PIVDACFTRDCQCILTCSTDECLR 233
P I + N+V+ W + D GQ P++D C++ D + T S D+ +
Sbjct: 53 PGNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 234 LFDKATGELLE 244
++D ++ + ++
Sbjct: 112 MWDLSSNQAIQ 122
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 9/130 (6%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLW-----NPYRNLLLKTYGGHAH 56
++ CV T++ + +++V + G+ TC DK + +W + Y + H
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE--CVSVLNSHTQ 151
Query: 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RRWREHASKVTCVKFNEDSSVVIS 114
+V +AS + D +V L+ V H S V + F+ + S
Sbjct: 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 115 GSQDNTVMMW 124
S D TV +W
Sbjct: 212 CSDDRTVRIW 221
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 47/232 (20%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYGGHAHEVNDATAACDSSQIASGAS 75
+ +N G+ +CG D++I++W + + GH V + + +AS +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 76 DKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 133
D + +W+ + V H ++V V + +++ + S+D +V +W+V +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 134 IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193
L+S + D K W HP+++ + SA
Sbjct: 142 CVSVLNSH-------TQDVKHVVW-------------------------HPSQELLASAS 169
Query: 194 -GNNVKLWTAEED--------YGQEPIV-DACFTRDCQCILTCSTDECLRLF 235
+ VKL+ EED G E V F Q + +CS D +R++
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLW----------------NPYRN 45
++ C T++ + + ++ F+ G +C D+ +++W +P
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242
Query: 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG----QPVRRW-----REH 96
+ G H+ + D + +A+ D ++ +++ QP + H
Sbjct: 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302
Query: 97 ASKVTCVKFN-EDSSVVISGSQDNTVMMW 124
+ V CV +N ++ ++ S S D V W
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%)
Query: 37 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96
IK+ + NL + H E+ + S + D + +W V G R H
Sbjct: 118 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
Query: 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ VT + + V+S S D T+ +W+
Sbjct: 178 RATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 47/270 (17%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
I ++F G ++ D ++K+W+ +T GH V D + S +
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 76 DKSVILWEVTTGQPV----RRWREH--------------------ASKVTCVKFNEDSSV 111
D ++ LWE TG + R+ H SK ++F
Sbjct: 199 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 258
Query: 112 VISGSQDNTVMMWDVKSRSHHPIQ-----------CCLDSKDSQ-IFCGSSDGKIYKWQL 159
VI+G + + +V S+ IQ +D ++ I+ G +G + +W L
Sbjct: 259 VIAGHVSGVITVHNVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
Query: 160 VDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR 218
+ + + G +N++ + S ++KL + + P ++
Sbjct: 318 RSPECPVGEFLINEGTP-INNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEF---- 372
Query: 219 DCQCILTCSTDE----CLRLFDKATGELLE 244
+ L + DE C D++ GE+LE
Sbjct: 373 ETPTFLVSNDDEVSQFCYVSDDESNGEVLE 402
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 96 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIF 146
H S++T +KF +IS SQD + +W VK S+ + + +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 147 CGSSDGKIYKWQ 158
S DG I W+
Sbjct: 195 SASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%)
Query: 37 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96
IK+ + NL + H E+ + S + D + +W V G R H
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ VT + + V+S S D T+ +W+
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
I ++F G ++ D ++K+W+ +T GH V D + S +
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 76 DKSVILWEVTTGQPVRRW 93
D ++ LWE TG + +
Sbjct: 202 DGTIRLWECGTGTTIHTF 219
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 96 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------IQCCLDSKDSQIF 146
H S++T +KF +IS SQD + +W VK S+ + + +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 147 CGSSDGKIYKWQLVDSSQISTL 168
S DG I W+ + I T
Sbjct: 198 SASLDGTIRLWECGTGTTIHTF 219
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAH 56
E + I+ + ++ V ++ DG Y TC DK + +W + + H+
Sbjct: 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 57 EVNDATAACDSSQIASGASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSV--V 112
+V + +AS + D +V +W+ + V H V F++ V +
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 113 ISGSQDNTVMMW 124
SGS D+TV +W
Sbjct: 215 CSGSDDSTVRVW 226
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 66 DSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
D +QIA ++ V ++E + + V +EH +VT V + DS+ +++ D +
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 124 WDVKSRSHHPIQCCL 138
W +K R+ P L
Sbjct: 79 WTLKGRTWKPTLVIL 93
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera
pdb|3GTV|B Chain B, Human-Mouse Sod1 Chimera
pdb|3GTV|C Chain C, Human-Mouse Sod1 Chimera
pdb|3GTV|D Chain D, Human-Mouse Sod1 Chimera
pdb|3GTV|E Chain E, Human-Mouse Sod1 Chimera
pdb|3GTV|F Chain F, Human-Mouse Sod1 Chimera
pdb|3GTV|G Chain G, Human-Mouse Sod1 Chimera
pdb|3GTV|H Chain H, Human-Mouse Sod1 Chimera
pdb|3GTV|I Chain I, Human-Mouse Sod1 Chimera
pdb|3GTV|J Chain J, Human-Mouse Sod1 Chimera
pdb|3GTV|K Chain K, Human-Mouse Sod1 Chimera
pdb|3GTV|L Chain L, Human-Mouse Sod1 Chimera
Length = 153
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant
pdb|3H2P|B Chain B, Human Sod1 D124v Variant
Length = 153
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1
pdb|1UXM|B Chain B, A4v Mutant Of Human Sod1
pdb|1UXM|C Chain C, A4v Mutant Of Human Sod1
pdb|1UXM|D Chain D, A4v Mutant Of Human Sod1
pdb|1UXM|E Chain E, A4v Mutant Of Human Sod1
pdb|1UXM|F Chain F, A4v Mutant Of Human Sod1
pdb|1UXM|G Chain G, A4v Mutant Of Human Sod1
pdb|1UXM|H Chain H, A4v Mutant Of Human Sod1
pdb|1UXM|I Chain I, A4v Mutant Of Human Sod1
pdb|1UXM|J Chain J, A4v Mutant Of Human Sod1
pdb|1UXM|K Chain K, A4v Mutant Of Human Sod1
pdb|1UXM|L Chain L, A4v Mutant Of Human Sod1
Length = 153
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant
pdb|3GZQ|B Chain B, Human Sod1 A4v Metal-Free Variant
Length = 154
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|B Chain B, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|C Chain C, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|D Chain D, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|E Chain E, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|F Chain F, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|G Chain G, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|H Chain H, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|I Chain I, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|J Chain J, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate
Length = 154
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|B Chain B, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|C Chain C, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|D Chain D, Human Sod1 H80r Variant, P21 Crystal Form
Length = 153
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|E Chain E, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|F Chain F, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|G Chain G, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|H Chain H, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|I Chain I, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|J Chain J, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
Length = 159
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 31 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 66
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|B Chain B, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|C Chain C, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|D Chain D, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1SPD|A Chain A, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
pdb|1SPD|B Chain B, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
Length = 154
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKW|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKX|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
Length = 159
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 31 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 66
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|B Chain B, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|C Chain C, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|D Chain D, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|E Chain E, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|F Chain F, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|G Chain G, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|H Chain H, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|I Chain I, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|J Chain J, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|K Chain K, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|L Chain L, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|M Chain M, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|N Chain N, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|O Chain O, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|P Chain P, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|Q Chain Q, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|S Chain S, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1PU0|A Chain A, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|B Chain B, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|C Chain C, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|D Chain D, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|E Chain E, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|F Chain F, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|G Chain G, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|H Chain H, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|I Chain I, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|J Chain J, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|2C9U|A Chain A, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9U|F Chain F, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9V|A Chain A, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2C9V|F Chain F, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2V0A|A Chain A, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|2V0A|F Chain F, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|3ECU|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3KH3|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|G Chain G, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|H Chain H, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|I Chain I, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|J Chain J, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|K Chain K, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|L Chain L, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH4|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3RE0|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
Length = 153
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
pdb|2R27|B Chain B, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
Length = 154
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
pdb|2VR7|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
Length = 154
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|2VR6|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|3CQP|A Chain A, Human Sod1 G85r Variant, Structure I
pdb|3CQP|B Chain B, Human Sod1 G85r Variant, Structure I
pdb|3CQP|C Chain C, Human Sod1 G85r Variant, Structure I
pdb|3CQP|D Chain D, Human Sod1 G85r Variant, Structure I
Length = 153
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 66 DSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
D +QIA ++ V ++E + + V +EH +VT + + DS+ +++ D +
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 124 WDVKSRSHHPIQCCL 138
W +K R+ P L
Sbjct: 79 WTLKGRTWKPTLVIL 93
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|B Chain B, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|C Chain C, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|D Chain D, Human Sod1 G93a Metal-Free Variant
pdb|2WZ6|A Chain A, G93a Sod1 Mutant Complexed With Quinazoline.
pdb|2WZ6|F Chain F, G93a Sod1 Mutant Complexed With Quinazoline
Length = 153
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant
pdb|3GZO|B Chain B, Human Sod1 G93a Variant
pdb|3GZO|C Chain C, Human Sod1 G93a Variant
pdb|3GZO|D Chain D, Human Sod1 G93a Variant
pdb|3GZO|E Chain E, Human Sod1 G93a Variant
pdb|3GZO|F Chain F, Human Sod1 G93a Variant
pdb|3GZO|G Chain G, Human Sod1 G93a Variant
pdb|3GZO|H Chain H, Human Sod1 G93a Variant
pdb|3GZO|I Chain I, Human Sod1 G93a Variant
pdb|3GZO|J Chain J, Human Sod1 G93a Variant
pdb|2WKO|A Chain A, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1
pdb|1UXL|B Chain B, I113t Mutant Of Human Sod1
pdb|1UXL|C Chain C, I113t Mutant Of Human Sod1
pdb|1UXL|D Chain D, I113t Mutant Of Human Sod1
pdb|1UXL|E Chain E, I113t Mutant Of Human Sod1
pdb|1UXL|F Chain F, I113t Mutant Of Human Sod1
pdb|1UXL|G Chain G, I113t Mutant Of Human Sod1
pdb|1UXL|H Chain H, I113t Mutant Of Human Sod1
pdb|1UXL|I Chain I, I113t Mutant Of Human Sod1
pdb|1UXL|J Chain J, I113t Mutant Of Human Sod1
pdb|3ECV|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|4A7G|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space
Group.
pdb|4A7Q|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
4-(4- Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21
Space Group.
pdb|4A7Q|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
4-(4- Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21
Space Group.
pdb|4A7S|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7S|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7T|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7T|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7U|A Chain A, Structure Of Human I113t Sod1 Complexed With Adrenaline
In The P21 Space Group.
pdb|4A7U|F Chain F, Structure Of Human I113t Sod1 Complexed With Adrenaline
In The P21 Space Group.
pdb|4A7V|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
pdb|4A7V|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
Length = 153
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space Group
Length = 153
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|B Chain B, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|C Chain C, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
Length = 153
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|2C9S|F Chain F, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|3T5W|A Chain A, 2me Modified Human Sod1
pdb|3T5W|B Chain B, 2me Modified Human Sod1
pdb|3T5W|D Chain D, 2me Modified Human Sod1
pdb|3T5W|E Chain E, 2me Modified Human Sod1
pdb|3T5W|F Chain F, 2me Modified Human Sod1
pdb|3T5W|G Chain G, 2me Modified Human Sod1
pdb|3T5W|H Chain H, 2me Modified Human Sod1
pdb|3T5W|I Chain I, 2me Modified Human Sod1
pdb|3T5W|J Chain J, 2me Modified Human Sod1
pdb|3T5W|K Chain K, 2me Modified Human Sod1
pdb|3T5W|L Chain L, 2me Modified Human Sod1
pdb|3T5W|M Chain M, 2me Modified Human Sod1
Length = 153
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form
pdb|3QQD|B Chain B, Human Sod1 H80r Variant, P212121 Crystal Form
Length = 154
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant
pdb|1N19|B Chain B, Structure Of The Hsod A4v Mutant
Length = 154
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|F Chain F, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|B Chain B, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|G Chain G, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|C Chain C, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|H Chain H, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|D Chain D, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|I Chain I, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|E Chain E, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|J Chain J, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
Length = 153
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a
Resolution
pdb|1OZU|B Chain B, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a
Resolution
Length = 153
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
pdb|2VR8|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
Length = 154
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii
pdb|3CQQ|B Chain B, Human Sod1 G85r Variant, Structure Ii
Length = 153
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|B Chain B, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|C Chain C, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|D Chain D, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|E Chain E, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|F Chain F, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|G Chain G, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|H Chain H, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|I Chain I, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|J Chain J, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
Length = 154
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|F Chain F, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|B Chain B, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|G Chain G, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|C Chain C, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|H Chain H, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|D Chain D, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|I Chain I, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|E Chain E, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|J Chain J, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
Length = 154
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|1L3N|B Chain B, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|2AF2|A Chain A, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2AF2|B Chain B, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2LU5|A Chain A, Structure And Chemical Shifts Of Cu(I),Zn(Ii) Superoxide
Dismutase By Solid-State Nmr
Length = 153
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|B Chain B, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|C Chain C, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|D Chain D, C6aC111A CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human)
pdb|1AZV|B Chain B, Familial Als Mutant G37r Cuznsod (Human)
Length = 153
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKRLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation
H43f
Length = 153
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLFGFHVHEEEDNTAGCTSA 60
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 182 SHPTRKHIMSACGNNVK--LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237
+H +R + C N V L T+EED+G ++ A F RD S D L + D+
Sbjct: 106 AHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFLRD------MSEDSALEVLDQ 157
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn
Ligands
Length = 153
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide
Dismutase, Nmr, 36 Structures
Length = 153
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC
Resolution
pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Copper-Free
Superoxide Dismutase
pdb|1RK7|A Chain A, Solution Structure Of Apo Cu,Zn Superoxide Dismutase:
Role Of Metal Ions In Protein Folding
Length = 153
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WYT|F Chain F, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WZ0|A Chain A, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ0|F Chain F, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ5|A Chain A, L38v Sod1 Mutant Complexed With L-Methionine.
pdb|2WZ5|F Chain F, L38v Sod1 Mutant Complexed With L-Methionine
Length = 153
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + + +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase
Length = 153
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump
pdb|2WYZ|F Chain F, L38v Sod1 Mutant Complexed With Ump
Length = 153
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + + +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 90 VRRWREHASKVTCVKFN-EDSSVVISGSQDNTVMMWDVKSRSHHP 133
+ R+ H+S V VKFN + +V+ SG + + +WD+ + P
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 66 DSSQIASGA---SDKSVILWEVTTGQ-PVRRWRE-HASKVTCVKF-NEDSSVVISGSQDN 119
+S+++A+ +D S+++W++ P++ + H + + + ++D +++S +DN
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 120 TVMMWDVKSR---SHHPIQ--CCLDSK----DSQIF-CGSSDGKI 154
TV++W+ +S S P + C +K +F C S D KI
Sbjct: 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of
Human Copper, Zinc Superoxide Dismutase Bearing The
Same Charge As The Native Protein
Length = 153
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis
(Fals) Mutant H43r
pdb|1PTZ|B Chain B, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis
(Fals) Mutant H43r
Length = 153
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLRGFHVHEFGDNTAGCTSA 60
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 202 AEEDYGQEPIV-------DACFTRDC---QCILTCSTDECLRLFDKATGELLEEYK-GHK 250
EE + QEPI+ D +D Q I+T DE +++ +++++ GHK
Sbjct: 182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241
Query: 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL-IHSVGKAVVNSLCSHPTR 308
I CC KD + D KI+ W +ST +S+ K +N P R
Sbjct: 242 HFVSSI-CC--GKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR 297
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 111 VVISGSQDNTVMMWDVKS--------RSH---------HPIQCCLDSKDSQIFCGSSDGK 153
VV +G QD + +WDV+ ++H HP S +F S DG
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHP------SNPEHLFTCSEDGS 304
Query: 154 IYKWQL-VDSSQISTLIHSVGKA 175
++ W D + S+L H G++
Sbjct: 305 LWHWDASTDVPEKSSLFHQGGRS 327
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
Length = 153
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D A C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNRAGCTSA 60
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|X Chain X, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Y Chain Y, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Z Chain Z, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OZT|M Chain M, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|N Chain N, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|G Chain G, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|H Chain H, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|K Chain K, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|L Chain L, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|I Chain I, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|J Chain J, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
Length = 153
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFRVHEFGDNTAGCTSA 60
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|B Chain B, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|C Chain C, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|D Chain D, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBV|A Chain A, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|B Chain B, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|C Chain C, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|D Chain D, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|E Chain E, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|F Chain F, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|G Chain G, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|H Chain H, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|I Chain I, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|J Chain J, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 33 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
S+ +K+W + L +G H HE D TA S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGATSA 60
>pdb|2LCU|A Chain A, Nmr Structure Of Bc28.1
Length = 223
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEE 204
VVN L SH +I A NV WT EE
Sbjct: 175 VVNELVSHKDMIYINDAMKQNVDKWTKEE 203
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 298 VVNSLCSHPTRKHIMSACGNNVKLWTAEE 326
VVN L SH +I A NV WT EE
Sbjct: 175 VVNELVSHKDMIYINDAMKQNVDKWTKEE 203
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 45 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 16 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 63
Query: 104 KF--NEDSSVVISGSQDNTVMMWD 125
+ E ++ S S D TV +W+
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE 87
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 45 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 16 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 63
Query: 104 KF--NEDSSVVISGSQDNTVMMWD 125
+ E ++ S S D TV +W+
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 45 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 14 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 61
Query: 104 KF--NEDSSVVISGSQDNTVMMWD 125
+ E ++ S S D TV +W+
Sbjct: 62 DWASPEYGRIIASASYDKTVKLWE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,673,620
Number of Sequences: 62578
Number of extensions: 422404
Number of successful extensions: 1914
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 481
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)