Query psy17863
Match_columns 341
No_of_seqs 947 out of 1427
Neff 12.0
Searched_HMMs 29240
Date Sat Aug 17 00:57:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4.8E-53 1.6E-57 355.9 38.1 281 6-325 101-410 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 2.8E-52 9.5E-57 337.6 40.7 288 1-327 1-303 (304)
3 1nr0_A Actin interacting prote 100.0 3.1E-52 1E-56 368.1 43.5 318 3-325 180-610 (611)
4 3ow8_A WD repeat-containing pr 100.0 5.8E-52 2E-56 337.8 36.9 282 5-325 24-320 (321)
5 1nr0_A Actin interacting prote 100.0 1.3E-51 4.6E-56 364.0 41.4 320 5-328 139-569 (611)
6 1got_B GT-beta; complex (GTP-b 100.0 7.1E-51 2.4E-55 334.6 39.5 282 2-323 44-340 (340)
7 2pbi_B Guanine nucleotide-bind 100.0 5.1E-50 1.7E-54 331.0 39.5 281 3-323 54-354 (354)
8 4ery_A WD repeat-containing pr 100.0 9.1E-50 3.1E-54 324.5 40.0 286 3-325 13-311 (312)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.1E-50 1.8E-54 330.0 38.2 298 2-333 4-342 (345)
10 2ymu_A WD-40 repeat protein; u 100.0 1.9E-49 6.5E-54 349.1 43.5 313 3-326 6-375 (577)
11 2ymu_A WD-40 repeat protein; u 100.0 4.5E-49 1.5E-53 346.8 43.9 311 2-323 251-577 (577)
12 3frx_A Guanine nucleotide-bind 100.0 1.8E-49 6.1E-54 323.2 38.0 285 3-327 7-318 (319)
13 3iz6_a 40S ribosomal protein R 100.0 1.6E-50 5.6E-55 337.3 32.1 288 3-328 56-377 (380)
14 1r5m_A SIR4-interacting protei 100.0 2.5E-49 8.4E-54 335.5 37.2 308 10-325 42-424 (425)
15 2xzm_R RACK1; ribosome, transl 100.0 1.3E-48 4.4E-53 321.6 38.7 285 3-328 11-342 (343)
16 4g56_B MGC81050 protein; prote 100.0 1.8E-49 6.1E-54 327.9 30.9 284 8-331 37-348 (357)
17 1erj_A Transcriptional repress 100.0 3.3E-48 1.1E-52 324.8 37.6 283 11-327 62-390 (393)
18 2hes_X YDR267CP; beta-propelle 100.0 1.9E-47 6.4E-52 312.8 39.4 287 3-326 4-328 (330)
19 4gqb_B Methylosome protein 50; 100.0 1.5E-48 5E-53 320.0 32.7 280 10-330 27-335 (344)
20 3zwl_B Eukaryotic translation 100.0 9.2E-47 3.1E-51 313.8 39.2 298 4-329 23-349 (369)
21 2pm9_A Protein WEB1, protein t 100.0 8.7E-49 3E-53 331.4 25.7 313 12-327 11-415 (416)
22 4aow_A Guanine nucleotide-bind 100.0 7.7E-47 2.6E-51 311.0 35.7 285 4-328 29-339 (340)
23 1pgu_A Actin interacting prote 100.0 3.9E-46 1.3E-50 330.4 40.0 317 4-326 151-614 (615)
24 1gxr_A ESG1, transducin-like e 100.0 9.5E-46 3.3E-50 304.0 36.8 305 11-324 7-335 (337)
25 3sfz_A APAF-1, apoptotic pepti 100.0 7.3E-46 2.5E-50 352.6 39.5 319 6-328 608-1036(1249)
26 2oaj_A Protein SNI1; WD40 repe 100.0 3E-45 1E-49 334.7 40.1 192 8-203 12-241 (902)
27 3mkq_A Coatomer beta'-subunit; 100.0 8.9E-45 3E-49 331.6 41.4 323 1-326 1-386 (814)
28 3dm0_A Maltose-binding peripla 100.0 4.3E-45 1.5E-49 327.5 38.1 283 4-326 373-693 (694)
29 3ei3_B DNA damage-binding prot 100.0 6.1E-45 2.1E-49 304.5 36.3 286 2-326 62-382 (383)
30 1sq9_A Antiviral protein SKI8; 100.0 4E-45 1.4E-49 307.1 34.5 287 4-327 7-396 (397)
31 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-44 1.1E-48 292.0 38.1 283 2-331 7-301 (313)
32 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.8E-44 2E-48 304.4 40.9 308 4-328 109-444 (445)
33 3i2n_A WD repeat-containing pr 100.0 7.6E-45 2.6E-49 301.0 32.6 289 5-327 10-354 (357)
34 3vl1_A 26S proteasome regulato 100.0 2.1E-45 7.1E-50 311.1 29.5 306 15-326 58-419 (420)
35 2pm7_B Protein transport prote 100.0 1.8E-44 6E-49 290.9 33.4 266 6-327 2-286 (297)
36 3k26_A Polycomb protein EED; W 100.0 1.9E-44 6.4E-49 299.6 33.7 285 2-325 6-365 (366)
37 3sfz_A APAF-1, apoptotic pepti 100.0 5.9E-44 2E-48 339.6 41.5 322 3-331 647-1079(1249)
38 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-44 8.1E-49 299.8 33.8 286 8-328 3-363 (372)
39 2oaj_A Protein SNI1; WD40 repe 100.0 4.2E-44 1.4E-48 327.1 37.9 316 4-324 90-659 (902)
40 4e54_B DNA damage-binding prot 100.0 9.9E-45 3.4E-49 307.9 30.2 289 4-329 110-433 (435)
41 1pgu_A Actin interacting prote 100.0 2.7E-43 9.2E-48 312.2 40.6 319 4-327 54-573 (615)
42 3v7d_B Cell division control p 100.0 2.7E-43 9.3E-48 301.9 37.9 306 5-323 113-460 (464)
43 2ynn_A Coatomer subunit beta'; 100.0 1.2E-43 4.2E-48 287.0 33.8 248 46-330 4-263 (304)
44 1vyh_C Platelet-activating fac 100.0 7.7E-44 2.6E-48 299.8 31.9 241 4-282 141-410 (410)
45 3ow8_A WD repeat-containing pr 100.0 3.1E-43 1E-47 286.4 33.8 240 5-281 72-319 (321)
46 3gre_A Serine/threonine-protei 100.0 7.6E-44 2.6E-48 303.1 28.4 298 3-323 52-437 (437)
47 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-44 1.9E-48 306.7 27.5 311 8-328 129-519 (524)
48 3bg1_A Protein SEC13 homolog; 100.0 6.4E-44 2.2E-48 290.1 26.1 269 6-327 6-294 (316)
49 4h5i_A Guanine nucleotide-exch 100.0 1.3E-43 4.4E-48 293.7 28.3 277 13-330 14-347 (365)
50 3mmy_A MRNA export factor; mRN 100.0 4.7E-43 1.6E-47 291.4 31.1 286 2-326 28-346 (368)
51 1got_B GT-beta; complex (GTP-b 100.0 2.7E-42 9.1E-47 283.6 34.4 252 45-329 45-304 (340)
52 3dwl_C Actin-related protein 2 100.0 2.5E-44 8.5E-49 300.3 22.4 284 7-324 5-377 (377)
53 4gqb_B Methylosome protein 50; 100.0 2.6E-42 8.8E-47 282.9 33.7 237 10-286 79-334 (344)
54 4aez_A CDC20, WD repeat-contai 100.0 1.3E-41 4.5E-46 285.9 35.7 281 11-332 89-386 (401)
55 3jrp_A Fusion protein of prote 100.0 4.6E-42 1.6E-46 286.6 32.0 268 4-327 2-288 (379)
56 1yfq_A Cell cycle arrest prote 100.0 1.1E-41 3.9E-46 280.4 33.7 278 4-324 2-322 (342)
57 4gga_A P55CDC, cell division c 100.0 2.3E-41 7.8E-46 286.0 36.2 273 15-328 107-397 (420)
58 3f3f_A Nucleoporin SEH1; struc 100.0 7.7E-42 2.6E-46 281.9 32.0 270 5-334 3-345 (351)
59 4ggc_A P55CDC, cell division c 100.0 5.7E-41 2E-45 273.4 36.2 286 1-327 9-316 (318)
60 1gxr_A ESG1, transducin-like e 100.0 1.4E-40 4.7E-45 273.3 37.8 268 8-282 46-336 (337)
61 4a11_B DNA excision repair pro 100.0 6.8E-41 2.3E-45 282.2 35.7 289 4-331 34-370 (408)
62 3dw8_B Serine/threonine-protei 100.0 2.4E-41 8.2E-46 288.5 33.2 287 12-324 27-444 (447)
63 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-41 9.3E-46 287.0 32.7 268 10-330 130-418 (435)
64 3iz6_a 40S ribosomal protein R 100.0 8.3E-42 2.9E-46 284.8 27.1 262 34-328 45-331 (380)
65 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-40 1.3E-44 301.2 39.4 312 3-326 45-423 (814)
66 2pbi_B Guanine nucleotide-bind 100.0 2.5E-40 8.5E-45 273.1 33.9 252 46-328 55-317 (354)
67 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-40 7.3E-45 272.7 33.3 248 9-291 57-343 (345)
68 4g56_B MGC81050 protein; prote 100.0 5.6E-41 1.9E-45 277.1 29.9 241 7-287 88-347 (357)
69 3frx_A Guanine nucleotide-bind 100.0 9.3E-40 3.2E-44 265.9 34.5 240 4-284 56-318 (319)
70 1r5m_A SIR4-interacting protei 100.0 1.6E-40 5.5E-45 281.4 31.0 289 35-328 25-363 (425)
71 4ery_A WD repeat-containing pr 100.0 1.4E-39 4.9E-44 264.4 34.4 245 3-282 55-311 (312)
72 2hes_X YDR267CP; beta-propelle 100.0 2.4E-39 8E-44 264.8 33.4 244 4-283 47-328 (330)
73 2pm9_A Protein WEB1, protein t 100.0 7.3E-41 2.5E-45 282.9 24.6 271 11-284 65-415 (416)
74 1erj_A Transcriptional repress 100.0 3E-39 1E-43 270.6 34.0 245 15-284 125-390 (393)
75 3vl1_A 26S proteasome regulato 100.0 5.2E-39 1.8E-43 271.9 33.2 270 9-283 94-419 (420)
76 2xzm_R RACK1; ribosome, transl 100.0 2E-38 6.9E-43 260.9 34.9 242 46-328 12-287 (343)
77 3jro_A Fusion protein of prote 100.0 5.5E-40 1.9E-44 296.1 26.7 267 6-328 2-287 (753)
78 3vu4_A KMHSV2; beta-propeller 100.0 5.2E-38 1.8E-42 259.3 31.4 297 4-330 10-340 (355)
79 2xyi_A Probable histone-bindin 100.0 4.2E-38 1.4E-42 266.7 31.3 252 7-328 122-412 (430)
80 3k26_A Polycomb protein EED; W 100.0 3E-38 1E-42 262.3 29.3 246 12-282 68-365 (366)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-38 4.1E-43 268.0 27.1 253 5-327 73-343 (402)
82 4aow_A Guanine nucleotide-bind 100.0 1.3E-37 4.6E-42 255.8 31.8 247 42-328 25-288 (340)
83 3v7d_B Cell division control p 100.0 3.9E-37 1.3E-41 263.7 35.4 272 47-330 113-425 (464)
84 4aez_A CDC20, WD repeat-contai 100.0 3.2E-37 1.1E-41 259.2 33.7 248 5-291 125-388 (401)
85 4gga_A P55CDC, cell division c 100.0 6.2E-37 2.1E-41 258.9 34.2 249 8-291 142-403 (420)
86 3gre_A Serine/threonine-protei 100.0 2.9E-38 9.9E-43 268.7 26.2 283 21-334 35-367 (437)
87 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-37 1.1E-41 256.6 31.9 239 51-326 4-274 (372)
88 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-37 5.1E-42 266.9 29.6 269 6-282 200-516 (524)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.3E-36 1.5E-40 255.9 36.8 266 3-283 149-442 (445)
90 2j04_A TAU60, YPL007P, hypothe 100.0 1E-37 3.4E-42 262.2 26.1 280 11-315 13-349 (588)
91 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-36 1.1E-40 256.7 35.6 277 13-327 4-392 (450)
92 3dwl_C Actin-related protein 2 100.0 3.7E-38 1.3E-42 262.9 22.0 238 51-325 7-280 (377)
93 3zwl_B Eukaryotic translation 100.0 6.6E-36 2.3E-40 248.4 35.5 243 47-330 24-308 (369)
94 4gq1_A NUP37; propeller, trans 100.0 8.9E-38 3E-42 261.5 23.8 267 14-326 90-389 (393)
95 1sq9_A Antiviral protein SKI8; 100.0 7.7E-37 2.6E-41 256.7 29.3 257 3-285 52-397 (397)
96 3dm0_A Maltose-binding peripla 100.0 1.3E-36 4.5E-41 272.6 31.5 243 47-329 374-635 (694)
97 3bws_A Protein LP49; two-domai 100.0 4.7E-36 1.6E-40 254.8 33.3 280 4-326 114-432 (433)
98 3i2n_A WD repeat-containing pr 100.0 3.2E-36 1.1E-40 249.3 30.6 239 10-286 62-356 (357)
99 3dw8_B Serine/threonine-protei 100.0 4.2E-37 1.4E-41 262.3 24.8 268 54-328 27-375 (447)
100 3ei3_B DNA damage-binding prot 100.0 2.1E-36 7.1E-41 252.8 27.2 251 41-331 59-344 (383)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-36 1.9E-40 251.8 29.1 245 15-328 36-301 (402)
102 4h5i_A Guanine nucleotide-exch 100.0 9.1E-37 3.1E-41 252.6 23.2 238 8-284 68-344 (365)
103 3odt_A Protein DOA1; ubiquitin 100.0 3.3E-35 1.1E-39 238.7 31.7 245 3-291 49-304 (313)
104 4ggc_A P55CDC, cell division c 100.0 1.3E-34 4.3E-39 235.9 34.3 241 4-285 56-317 (318)
105 2pm7_B Protein transport prote 100.0 5.4E-35 1.8E-39 235.5 29.6 209 48-327 2-239 (297)
106 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-35 1.4E-39 248.9 29.2 252 3-306 163-434 (435)
107 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-35 3.7E-40 244.6 24.3 260 20-326 43-333 (343)
108 4a11_B DNA excision repair pro 100.0 1.1E-34 3.7E-39 244.4 30.8 277 11-326 97-405 (408)
109 1l0q_A Surface layer protein; 100.0 2.3E-33 7.9E-38 235.1 38.2 293 26-328 3-344 (391)
110 4e54_B DNA damage-binding prot 100.0 2.9E-35 1E-39 249.7 25.0 246 47-329 111-390 (435)
111 2w18_A PALB2, fancn, partner a 100.0 1.1E-33 3.9E-38 223.7 31.8 282 3-324 25-355 (356)
112 1yfq_A Cell cycle arrest prote 100.0 2.1E-34 7E-39 237.0 28.6 241 50-331 6-287 (342)
113 1nir_A Nitrite reductase; hemo 100.0 1.3E-32 4.4E-37 238.2 33.7 309 20-334 144-522 (543)
114 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-33 1.1E-37 230.6 28.3 245 39-328 3-273 (355)
115 3bg1_A Protein SEC13 homolog; 100.0 8E-34 2.7E-38 230.7 24.0 228 5-283 49-293 (316)
116 3jrp_A Fusion protein of prote 100.0 1.2E-32 4E-37 229.7 31.3 215 3-284 45-288 (379)
117 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-32 4.8E-37 226.4 28.9 253 4-291 48-345 (351)
118 3lrv_A PRE-mRNA-splicing facto 100.0 6.3E-34 2.1E-38 234.1 19.7 234 62-328 43-294 (343)
119 3mmy_A MRNA export factor; mRN 100.0 2.9E-32 9.8E-37 226.3 29.8 253 38-330 22-308 (368)
120 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-33 6.2E-38 236.5 22.5 248 53-325 13-296 (588)
121 1l0q_A Surface layer protein; 100.0 6.4E-31 2.2E-35 220.2 38.0 299 3-315 22-366 (391)
122 2w18_A PALB2, fancn, partner a 100.0 9.5E-33 3.3E-37 218.4 24.8 211 15-281 113-355 (356)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-31 6.5E-36 227.4 32.1 259 9-284 98-392 (450)
124 3jro_A Fusion protein of prote 100.0 2.5E-32 8.5E-37 246.3 22.9 214 3-283 43-285 (753)
125 2ecf_A Dipeptidyl peptidase IV 100.0 2.4E-30 8.1E-35 234.1 32.0 306 13-326 36-459 (741)
126 2xyi_A Probable histone-bindin 100.0 1.1E-30 3.7E-35 221.3 27.9 212 3-284 171-411 (430)
127 3bws_A Protein LP49; two-domai 100.0 1.3E-29 4.3E-34 215.2 33.4 276 12-329 59-393 (433)
128 1k32_A Tricorn protease; prote 100.0 3.8E-30 1.3E-34 240.2 31.9 314 5-328 44-463 (1045)
129 4gq1_A NUP37; propeller, trans 100.0 3E-31 1E-35 221.9 18.0 224 5-282 128-388 (393)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.1E-30 1.8E-34 215.6 25.2 286 13-309 62-410 (415)
131 1nir_A Nitrite reductase; hemo 100.0 1.7E-27 5.8E-32 206.2 34.1 284 3-291 169-522 (543)
132 3u4y_A Uncharacterized protein 100.0 1.4E-27 4.8E-32 195.4 31.1 270 19-328 3-306 (331)
133 1k32_A Tricorn protease; prote 100.0 3.8E-27 1.3E-31 220.0 31.4 307 6-325 92-501 (1045)
134 2z3z_A Dipeptidyl aminopeptida 100.0 1.9E-27 6.3E-32 214.0 28.3 301 15-328 27-437 (706)
135 1xfd_A DIP, dipeptidyl aminope 100.0 7.5E-28 2.6E-32 217.2 25.5 298 15-315 18-428 (723)
136 2ojh_A Uncharacterized protein 100.0 4.1E-27 1.4E-31 189.3 25.8 247 30-315 17-290 (297)
137 3vgz_A Uncharacterized protein 100.0 1.3E-25 4.4E-30 185.3 34.4 266 12-317 39-335 (353)
138 1ri6_A Putative isomerase YBHE 100.0 1.7E-25 5.8E-30 183.8 32.3 265 27-326 7-308 (343)
139 1pby_B Quinohemoprotein amine 100.0 5.7E-27 2E-31 192.1 23.0 262 26-331 2-315 (337)
140 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.8E-25 9.5E-30 186.8 31.0 221 4-265 169-410 (415)
141 3hfq_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 177.6 31.2 249 10-326 36-317 (347)
142 1ri6_A Putative isomerase YBHE 99.9 1.7E-24 5.9E-29 177.8 30.2 261 11-309 35-335 (343)
143 2z3z_A Dipeptidyl aminopeptida 99.9 9.6E-25 3.3E-29 196.4 30.8 299 14-324 82-474 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 3E-25 1E-29 200.8 26.3 264 55-326 36-413 (741)
145 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-24 6.1E-29 178.1 27.1 265 18-291 4-333 (349)
146 3u4y_A Uncharacterized protein 99.9 8.2E-24 2.8E-28 173.0 30.1 249 4-285 31-306 (331)
147 3o4h_A Acylamino-acid-releasin 99.9 5E-25 1.7E-29 193.8 24.3 261 12-326 20-315 (582)
148 2ojh_A Uncharacterized protein 99.9 2.3E-24 8E-29 173.2 25.1 230 6-274 34-293 (297)
149 3scy_A Hypothetical bacterial 99.9 7.8E-23 2.7E-27 169.2 34.2 275 23-326 11-337 (361)
150 3pe7_A Oligogalacturonate lyas 99.9 1.9E-24 6.5E-29 180.7 23.9 306 4-326 21-382 (388)
151 1z68_A Fibroblast activation p 99.9 2.3E-24 7.7E-29 194.4 25.8 304 18-328 20-445 (719)
152 1xfd_A DIP, dipeptidyl aminope 99.9 9.3E-25 3.2E-29 197.0 21.0 267 57-327 18-394 (723)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 8.5E-24 2.9E-28 178.4 21.8 241 13-325 36-332 (434)
154 3scy_A Hypothetical bacterial 99.9 1.2E-21 4.2E-26 162.0 34.4 262 12-305 48-360 (361)
155 1pby_B Quinohemoprotein amine 99.9 4.4E-23 1.5E-27 169.0 25.0 243 4-251 22-322 (337)
156 3vgz_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 166.5 26.6 244 54-330 39-307 (353)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-23 1E-27 175.0 21.8 225 35-328 23-280 (434)
158 4a5s_A Dipeptidyl peptidase 4 99.9 5.7E-22 2E-26 178.9 31.4 306 14-327 17-450 (740)
159 2oiz_A Aromatic amine dehydrog 99.9 2.7E-22 9.2E-27 165.4 25.6 276 24-309 14-360 (361)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.4E-22 1.2E-26 165.5 26.2 246 14-327 40-342 (365)
161 3c5m_A Oligogalacturonate lyas 99.9 6E-23 2.1E-27 172.0 21.7 286 16-326 38-382 (396)
162 1jmx_B Amine dehydrogenase; ox 99.9 7E-22 2.4E-26 162.6 26.4 263 60-331 4-330 (349)
163 3o4h_A Acylamino-acid-releasin 99.9 1E-22 3.5E-27 179.1 20.1 230 54-324 20-274 (582)
164 1z68_A Fibroblast activation p 99.9 1.5E-22 5.1E-27 182.5 19.9 259 59-326 19-391 (719)
165 1q7f_A NHL, brain tumor CG1071 99.9 1.2E-19 4E-24 145.2 32.6 242 12-327 28-281 (286)
166 3fvz_A Peptidyl-glycine alpha- 99.9 6.9E-20 2.4E-24 149.3 30.8 254 13-328 23-324 (329)
167 3hfq_A Uncharacterized protein 99.9 8.1E-19 2.8E-23 144.3 31.9 222 5-287 77-323 (347)
168 3azo_A Aminopeptidase; POP fam 99.9 2.7E-20 9.2E-25 166.3 24.3 286 8-324 18-365 (662)
169 1qks_A Cytochrome CD1 nitrite 99.9 4.8E-18 1.7E-22 146.9 36.8 306 23-334 165-546 (567)
170 2dg1_A DRP35, lactonase; beta 99.9 2.4E-19 8.3E-24 146.6 27.0 271 13-325 5-313 (333)
171 2gop_A Trilobed protease; beta 99.9 1.4E-18 4.8E-23 142.9 29.1 278 14-325 15-330 (347)
172 2oiz_A Aromatic amine dehydrog 99.9 9.1E-19 3.1E-23 144.3 27.0 254 4-265 42-360 (361)
173 3pe7_A Oligogalacturonate lyas 99.9 1E-19 3.5E-24 152.0 21.3 257 38-328 13-331 (388)
174 3e5z_A Putative gluconolactona 99.8 1.2E-17 4.2E-22 134.1 30.2 262 5-330 19-290 (296)
175 4a5s_A Dipeptidyl peptidase 4 99.8 3.3E-19 1.1E-23 160.9 22.3 263 56-328 17-355 (740)
176 3no2_A Uncharacterized protein 99.8 1.1E-17 3.6E-22 132.4 28.1 221 24-315 4-231 (276)
177 2z2n_A Virginiamycin B lyase; 99.8 9.3E-16 3.2E-20 123.2 39.0 276 9-327 10-296 (299)
178 2xdw_A Prolyl endopeptidase; a 99.8 9E-18 3.1E-22 151.0 28.3 248 12-328 123-416 (710)
179 2dg1_A DRP35, lactonase; beta 99.8 3.2E-16 1.1E-20 128.0 33.2 231 5-274 36-301 (333)
180 3sjl_D Methylamine dehydrogena 99.8 1.6E-17 5.6E-22 135.1 24.6 281 19-307 38-384 (386)
181 1rwi_B Serine/threonine-protei 99.8 6.7E-17 2.3E-21 128.0 27.5 240 15-329 25-267 (270)
182 3c5m_A Oligogalacturonate lyas 99.8 6.2E-19 2.1E-23 147.6 16.3 266 38-328 13-331 (396)
183 2bkl_A Prolyl endopeptidase; m 99.8 5E-18 1.7E-22 152.2 21.7 241 11-328 118-399 (695)
184 3dsm_A Uncharacterized protein 99.8 5.6E-17 1.9E-21 131.9 25.6 248 33-325 15-301 (328)
185 3azo_A Aminopeptidase; POP fam 99.8 3E-17 1E-21 146.7 25.7 287 6-324 60-409 (662)
186 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.4E-17 2.9E-21 133.1 26.0 211 15-284 84-342 (365)
187 2mad_H Methylamine dehydrogena 99.8 3.2E-15 1.1E-19 123.2 33.4 264 20-290 27-357 (373)
188 1qks_A Cytochrome CD1 nitrite 99.8 3.2E-15 1.1E-19 129.3 33.1 286 4-291 188-546 (567)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.8 8.8E-15 3E-19 118.4 31.4 258 9-328 13-301 (314)
190 2qc5_A Streptogramin B lactona 99.8 4.4E-14 1.5E-18 113.4 35.2 270 12-324 18-298 (300)
191 2gop_A Trilobed protease; beta 99.8 1.3E-15 4.4E-20 125.1 26.0 230 14-291 59-337 (347)
192 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-15 9.8E-20 119.6 26.2 202 12-285 75-282 (286)
193 1yr2_A Prolyl oligopeptidase; 99.7 1E-15 3.5E-20 138.2 25.4 243 12-328 161-443 (741)
194 3dsm_A Uncharacterized protein 99.7 1.6E-14 5.4E-19 117.5 28.9 244 15-304 45-319 (328)
195 3fvz_A Peptidyl-glycine alpha- 99.7 6.5E-15 2.2E-19 119.9 25.5 207 13-283 90-322 (329)
196 3c75_H MADH, methylamine dehyd 99.7 3.1E-15 1E-19 124.0 23.3 263 23-290 82-409 (426)
197 2xdw_A Prolyl endopeptidase; a 99.7 7.8E-15 2.7E-19 131.9 27.1 250 23-327 81-369 (710)
198 3hrp_A Uncharacterized protein 99.7 1.6E-13 5.4E-18 114.8 31.9 240 14-325 131-409 (409)
199 3no2_A Uncharacterized protein 99.7 3.6E-14 1.2E-18 112.1 25.2 226 3-303 25-272 (276)
200 3e5z_A Putative gluconolactona 99.7 3.6E-14 1.2E-18 113.8 25.5 208 45-326 17-246 (296)
201 3q7m_A Lipoprotein YFGL, BAMB; 99.7 1.1E-13 3.7E-18 115.0 29.0 288 24-323 52-375 (376)
202 3sjl_D Methylamine dehydrogena 99.7 4.6E-14 1.6E-18 114.9 25.4 242 3-249 69-373 (386)
203 2bkl_A Prolyl endopeptidase; m 99.7 1.4E-14 4.9E-19 129.8 24.4 247 22-325 76-348 (695)
204 2mad_H Methylamine dehydrogena 99.7 6.8E-13 2.3E-17 109.4 31.1 235 4-246 58-357 (373)
205 2z2n_A Virginiamycin B lyase; 99.7 1.6E-12 5.5E-17 104.2 32.5 233 52-325 11-254 (299)
206 2qe8_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 116.2 22.9 265 14-323 17-318 (343)
207 3g4e_A Regucalcin; six bladed 99.7 1.1E-12 3.7E-17 105.2 30.7 240 8-315 7-260 (297)
208 1mda_H Methylamine dehydrogena 99.7 8.3E-15 2.9E-19 119.5 18.0 257 36-306 47-366 (368)
209 2ghs_A AGR_C_1268P; regucalcin 99.6 6.7E-12 2.3E-16 101.9 31.3 227 14-315 49-290 (326)
210 3dr2_A Exported gluconolactona 99.6 2.1E-12 7.2E-17 103.9 28.1 249 6-323 37-303 (305)
211 1xip_A Nucleoporin NUP159; bet 99.6 4.8E-14 1.6E-18 115.3 17.2 171 15-270 39-231 (388)
212 1rwi_B Serine/threonine-protei 99.6 5.2E-13 1.8E-17 105.5 22.0 200 14-286 67-267 (270)
213 3iuj_A Prolyl endopeptidase; h 99.6 3.1E-13 1.1E-17 121.0 22.9 239 12-327 127-406 (693)
214 3hxj_A Pyrrolo-quinoline quino 99.6 1.6E-13 5.5E-18 111.7 18.8 289 18-328 24-326 (330)
215 1yr2_A Prolyl oligopeptidase; 99.6 5.2E-13 1.8E-17 120.6 23.3 246 22-325 115-392 (741)
216 3c75_H MADH, methylamine dehyd 99.6 2.2E-12 7.4E-17 107.0 25.0 258 65-332 82-408 (426)
217 2qc5_A Streptogramin B lactona 99.6 6.2E-11 2.1E-15 94.9 32.2 231 54-325 18-259 (300)
218 1xip_A Nucleoporin NUP159; bet 99.6 3E-13 1E-17 110.6 17.9 175 57-315 39-232 (388)
219 1kb0_A Quinohemoprotein alcoho 99.6 1.8E-12 6E-17 115.2 24.0 294 25-326 77-567 (677)
220 1yiq_A Quinohemoprotein alcoho 99.5 7.1E-12 2.4E-16 111.6 26.5 282 25-313 70-534 (689)
221 2hz6_A Endoplasmic reticulum t 99.5 9.5E-15 3.2E-19 120.6 6.7 203 24-309 8-216 (369)
222 1mda_H Methylamine dehydrogena 99.5 5.8E-12 2E-16 102.8 17.6 237 3-252 56-359 (368)
223 4a2l_A BT_4663, two-component 99.4 6.2E-09 2.1E-13 94.9 38.2 302 16-327 175-527 (795)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.4E-10 4.7E-15 96.3 25.1 243 24-280 102-375 (376)
225 2qe8_A Uncharacterized protein 99.4 2E-11 6.8E-16 99.9 19.6 218 11-279 64-317 (343)
226 1kb0_A Quinohemoprotein alcoho 99.4 4E-11 1.4E-15 106.6 22.5 259 67-330 77-511 (677)
227 1fwx_A Nitrous oxide reductase 99.4 6.4E-11 2.2E-15 100.7 22.3 249 23-285 99-433 (595)
228 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.9E-10 1.3E-14 90.9 26.4 203 12-283 69-299 (314)
229 3g4e_A Regucalcin; six bladed 99.4 3.7E-10 1.3E-14 90.4 24.9 194 12-271 52-260 (297)
230 4a2l_A BT_4663, two-component 99.4 2.2E-08 7.7E-13 91.3 39.6 302 13-327 214-572 (795)
231 1yiq_A Quinohemoprotein alcoho 99.4 8.7E-11 3E-15 104.7 22.4 259 67-330 70-509 (689)
232 3hxj_A Pyrrolo-quinoline quino 99.4 3.3E-11 1.1E-15 98.0 17.8 253 12-283 58-324 (330)
233 2ece_A 462AA long hypothetical 99.4 2.4E-09 8.3E-14 88.1 26.5 93 23-116 93-206 (462)
234 3iuj_A Prolyl endopeptidase; h 99.3 9.3E-11 3.2E-15 105.0 19.2 215 53-327 126-360 (693)
235 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.5E-14 87.5 23.5 207 46-326 35-267 (305)
236 3v9f_A Two-component system se 99.3 1.7E-07 5.7E-12 85.4 39.3 304 14-326 163-524 (781)
237 1fwx_A Nitrous oxide reductase 99.3 6.1E-10 2.1E-14 94.8 21.6 275 28-327 18-432 (595)
238 1kv9_A Type II quinohemoprotei 99.3 2E-09 6.9E-14 95.6 24.8 102 25-130 66-189 (668)
239 2ece_A 462AA long hypothetical 99.3 7.8E-09 2.7E-13 85.1 26.0 202 65-327 93-353 (462)
240 3hrp_A Uncharacterized protein 99.3 4.9E-09 1.7E-13 87.6 25.6 109 19-127 176-297 (409)
241 2iwa_A Glutamine cyclotransfer 99.3 5.2E-09 1.8E-13 80.9 23.3 207 45-328 9-239 (266)
242 2ghs_A AGR_C_1268P; regucalcin 99.3 9.1E-09 3.1E-13 83.4 25.6 188 12-271 88-290 (326)
243 2hz6_A Endoplasmic reticulum t 99.3 3.5E-12 1.2E-16 105.2 4.9 183 66-328 8-194 (369)
244 1npe_A Nidogen, entactin; glyc 99.2 7.4E-08 2.5E-12 75.7 29.1 243 26-309 2-263 (267)
245 3v9f_A Two-component system se 99.2 2E-07 6.8E-12 84.9 35.9 303 14-326 211-568 (781)
246 2iwa_A Glutamine cyclotransfer 99.2 8E-09 2.7E-13 79.8 22.0 161 3-170 9-190 (266)
247 1w6s_A Methanol dehydrogenase 99.2 2.6E-08 9E-13 86.8 27.7 281 25-311 62-530 (599)
248 1kv9_A Type II quinohemoprotei 99.2 4.1E-09 1.4E-13 93.7 22.2 261 25-291 117-496 (668)
249 3nol_A Glutamine cyclotransfer 99.2 9E-09 3.1E-13 78.6 20.8 161 3-170 31-210 (262)
250 1k3i_A Galactose oxidase precu 99.2 1.9E-08 6.4E-13 89.6 24.3 269 18-315 190-529 (656)
251 2ad6_A Methanol dehydrogenase 99.2 1.8E-08 6E-13 87.9 23.3 282 25-315 115-525 (571)
252 2ad6_A Methanol dehydrogenase 99.2 1.8E-08 6.2E-13 87.7 23.3 102 25-130 62-187 (571)
253 3nol_A Glutamine cyclotransfer 99.1 3.6E-08 1.2E-12 75.2 21.4 192 46-315 32-243 (262)
254 2fp8_A Strictosidine synthase; 99.1 3.3E-07 1.1E-11 74.1 28.0 255 14-329 19-316 (322)
255 3nok_A Glutaminyl cyclase; bet 99.1 4.3E-08 1.5E-12 74.8 20.7 181 4-192 44-252 (268)
256 1flg_A Protein (quinoprotein e 99.1 1.2E-07 4E-12 82.8 26.2 279 25-313 117-545 (582)
257 1npe_A Nidogen, entactin; glyc 99.1 8.4E-07 2.9E-11 69.6 28.9 213 14-264 36-262 (267)
258 3mbr_X Glutamine cyclotransfer 99.1 1.2E-07 4.1E-12 71.8 22.4 162 2-170 8-188 (243)
259 3nok_A Glutaminyl cyclase; bet 99.0 9.9E-08 3.4E-12 72.9 19.9 190 46-315 44-253 (268)
260 1w6s_A Methanol dehydrogenase 99.0 1.9E-07 6.5E-12 81.4 24.3 260 67-330 62-507 (599)
261 1flg_A Protein (quinoprotein e 99.0 6.6E-07 2.3E-11 78.1 27.6 103 26-130 69-195 (582)
262 2p4o_A Hypothetical protein; p 99.0 4.6E-06 1.6E-10 66.8 30.3 121 5-128 24-147 (306)
263 3mbr_X Glutamine cyclotransfer 99.0 4.6E-07 1.6E-11 68.6 22.1 192 46-315 10-222 (243)
264 2p4o_A Hypothetical protein; p 98.9 8.4E-06 2.9E-10 65.3 27.9 228 45-315 22-276 (306)
265 2xe4_A Oligopeptidase B; hydro 98.8 2.1E-06 7.3E-11 77.6 24.9 100 15-116 175-289 (751)
266 3ei3_A DNA damage-binding prot 98.8 0.00014 4.9E-09 68.4 39.7 302 15-328 515-915 (1158)
267 3qqz_A Putative uncharacterize 98.8 2.4E-05 8.1E-10 60.2 24.6 119 8-127 21-150 (255)
268 3tc9_A Hypothetical hydrolase; 98.7 3.1E-05 1.1E-09 65.1 27.1 110 15-127 138-256 (430)
269 3v64_C Agrin; beta propeller, 98.7 5.3E-05 1.8E-09 61.8 30.9 238 13-291 33-283 (349)
270 2xbg_A YCF48-like protein; pho 98.7 5.5E-05 1.9E-09 61.1 33.3 265 13-323 35-319 (327)
271 3v65_B Low-density lipoprotein 98.7 7.7E-05 2.6E-09 61.8 29.3 235 16-291 79-326 (386)
272 2xe4_A Oligopeptidase B; hydro 98.6 5.9E-06 2E-10 74.7 20.6 59 57-118 175-241 (751)
273 3qqz_A Putative uncharacterize 98.6 8.4E-05 2.9E-09 57.1 25.5 200 50-280 21-250 (255)
274 4hw6_A Hypothetical protein, I 98.6 0.00015 5.1E-09 60.9 26.8 183 57-241 140-375 (433)
275 2fp8_A Strictosidine synthase; 98.6 8.4E-05 2.9E-09 59.9 23.7 111 15-128 81-216 (322)
276 3v65_B Low-density lipoprotein 98.6 0.00018 6.2E-09 59.5 26.1 199 14-248 116-327 (386)
277 3v64_C Agrin; beta propeller, 98.5 0.00028 9.6E-09 57.5 28.0 198 14-247 73-283 (349)
278 1k3i_A Galactose oxidase precu 98.4 9E-06 3.1E-10 72.4 16.7 73 17-89 246-326 (656)
279 3p5b_L Low density lipoprotein 98.4 0.00049 1.7E-08 57.2 32.4 225 27-291 85-328 (400)
280 3sov_A LRP-6, low-density lipo 98.4 0.00041 1.4E-08 55.7 27.3 225 27-291 6-246 (318)
281 3p5b_L Low density lipoprotein 98.4 0.00054 1.9E-08 56.9 29.1 209 12-256 110-337 (400)
282 1ijq_A LDL receptor, low-densi 98.4 0.00048 1.6E-08 55.3 29.2 113 14-126 30-150 (316)
283 3s94_A LRP-6, low-density lipo 98.4 0.0011 3.6E-08 58.5 36.0 308 14-326 84-467 (619)
284 4hw6_A Hypothetical protein, I 98.3 0.0009 3.1E-08 56.2 25.6 222 15-238 140-432 (433)
285 3amr_A 3-phytase; beta-propell 98.3 0.00065 2.2E-08 54.4 25.2 201 24-291 39-272 (355)
286 3kya_A Putative phosphatase; s 98.3 0.0011 3.7E-08 56.1 28.2 112 15-127 140-277 (496)
287 3amr_A 3-phytase; beta-propell 98.3 0.00043 1.5E-08 55.4 21.2 101 222-325 145-262 (355)
288 3m0c_C LDL receptor, low-densi 98.3 0.0022 7.5E-08 58.0 29.2 116 12-127 422-545 (791)
289 3s94_A LRP-6, low-density lipo 98.2 0.0025 8.5E-08 56.1 37.4 308 14-327 127-511 (619)
290 2xbg_A YCF48-like protein; pho 98.2 0.0013 4.5E-08 53.0 26.3 218 13-237 79-320 (327)
291 1ijq_A LDL receptor, low-densi 98.2 0.0017 5.8E-08 52.1 31.2 226 27-328 3-240 (316)
292 2xzh_A Clathrin heavy chain 1; 98.1 0.0016 5.5E-08 51.3 27.9 237 19-286 72-335 (365)
293 2ism_A Putative oxidoreductase 98.1 0.002 7E-08 52.5 27.1 101 13-116 30-153 (352)
294 3ott_A Two-component system se 98.1 0.0053 1.8E-07 55.7 36.3 301 15-327 192-546 (758)
295 3tc9_A Hypothetical hydrolase; 98.1 0.0031 1.1E-07 53.0 24.7 119 8-128 173-301 (430)
296 2p9w_A MAL S 1 allergenic prot 98.1 0.0021 7.3E-08 51.0 24.6 118 8-125 7-165 (334)
297 1n7d_A LDL receptor, low-densi 98.1 3.4E-05 1.2E-09 69.0 12.3 218 34-291 385-622 (699)
298 3ei3_A DNA damage-binding prot 98.0 0.0094 3.2E-07 56.4 35.0 303 13-326 553-955 (1158)
299 3sov_A LRP-6, low-density lipo 98.0 0.003 1E-07 50.6 26.4 197 15-247 36-246 (318)
300 1n7d_A LDL receptor, low-densi 98.0 9.3E-05 3.2E-09 66.2 12.4 199 14-248 406-623 (699)
301 2vpj_A Kelch-like protein 12; 97.9 0.0043 1.5E-07 49.2 23.3 63 24-88 14-89 (301)
302 2xn4_A Kelch-like protein 2; s 97.9 0.0025 8.6E-08 50.6 18.6 63 263-327 204-277 (302)
303 3ii7_A Kelch-like protein 7; p 97.9 0.0048 1.6E-07 49.1 20.3 63 25-89 12-82 (306)
304 2p9w_A MAL S 1 allergenic prot 97.9 0.0028 9.5E-08 50.3 18.1 97 229-326 99-215 (334)
305 3a9g_A Putative uncharacterize 97.8 0.0084 2.9E-07 48.8 28.0 53 262-315 275-330 (354)
306 1bpo_A Protein (clathrin); cla 97.8 0.01 3.5E-07 48.8 28.0 238 18-286 70-334 (494)
307 4a0p_A LRP6, LRP-6, low-densit 97.8 0.017 5.8E-07 51.0 40.6 306 14-327 123-509 (628)
308 2vpj_A Kelch-like protein 12; 97.8 0.0072 2.5E-07 47.9 19.4 103 219-327 159-279 (301)
309 2xzh_A Clathrin heavy chain 1; 97.7 0.0097 3.3E-07 47.0 31.0 255 34-327 48-333 (365)
310 3m0c_C LDL receptor, low-densi 97.7 0.03 1E-06 50.8 30.9 99 27-127 397-501 (791)
311 1zgk_A Kelch-like ECH-associat 97.7 0.011 3.9E-07 47.0 19.0 64 23-88 23-101 (308)
312 3pbp_A Nucleoporin NUP82; beta 97.6 0.012 4.2E-07 48.3 18.3 101 176-279 67-208 (452)
313 3pbp_A Nucleoporin NUP82; beta 97.6 0.02 6.8E-07 47.1 20.4 110 22-133 29-163 (452)
314 3kya_A Putative phosphatase; s 97.6 0.0052 1.8E-07 52.1 16.8 147 177-326 141-341 (496)
315 1bpo_A Protein (clathrin); cla 97.6 0.025 8.4E-07 46.7 29.4 255 34-327 47-332 (494)
316 1xi4_A Clathrin heavy chain; a 97.5 0.02 6.8E-07 54.4 20.9 235 21-286 73-334 (1630)
317 3sre_A PON1, serum paraoxonase 97.5 0.023 7.8E-07 46.0 22.3 103 208-315 164-285 (355)
318 3a9g_A Putative uncharacterize 97.4 0.033 1.1E-06 45.4 28.8 103 13-117 28-154 (354)
319 2be1_A Serine/threonine-protei 97.4 0.021 7.3E-07 45.8 17.3 103 68-170 11-139 (339)
320 3ott_A Two-component system se 97.4 0.077 2.6E-06 48.2 38.3 296 14-326 232-586 (758)
321 4asc_A Kelch repeat and BTB do 97.4 0.036 1.2E-06 44.2 19.7 61 27-89 7-79 (315)
322 1tl2_A L10, protein (tachylect 97.3 0.0085 2.9E-07 44.4 12.8 104 14-123 41-158 (236)
323 4a0p_A LRP6, LRP-6, low-densit 97.3 0.076 2.6E-06 46.9 38.6 305 15-325 81-464 (628)
324 3ii7_A Kelch-like protein 7; p 97.3 0.043 1.5E-06 43.5 19.3 66 24-89 55-130 (306)
325 2xn4_A Kelch-like protein 2; s 97.3 0.018 6.2E-07 45.6 15.7 64 24-89 61-136 (302)
326 2uvk_A YJHT; unknown function, 97.2 0.059 2E-06 43.8 18.5 92 24-118 19-128 (357)
327 2g8s_A Glucose/sorbosone dehyd 97.0 0.096 3.3E-06 42.6 28.5 63 263-325 288-351 (353)
328 2woz_A Kelch repeat and BTB do 97.0 0.094 3.2E-06 41.8 18.7 61 27-89 18-90 (318)
329 1tl2_A L10, protein (tachylect 97.0 0.066 2.2E-06 39.8 16.2 125 25-156 4-158 (236)
330 4asc_A Kelch repeat and BTB do 96.9 0.1 3.5E-06 41.5 16.7 66 21-88 42-128 (315)
331 1xi4_A Clathrin heavy chain; a 96.8 0.35 1.2E-05 46.4 20.9 254 34-326 47-331 (1630)
332 1zgk_A Kelch-like ECH-associat 96.8 0.065 2.2E-06 42.5 14.6 64 24-89 70-149 (308)
333 3sre_A PON1, serum paraoxonase 96.8 0.16 5.6E-06 41.1 23.8 68 210-280 222-295 (355)
334 2be1_A Serine/threonine-protei 96.7 0.021 7.2E-07 45.8 11.1 66 219-285 110-185 (339)
335 3das_A Putative oxidoreductase 96.5 0.23 8E-06 40.0 28.6 59 50-108 26-90 (347)
336 2woz_A Kelch repeat and BTB do 96.5 0.22 7.6E-06 39.6 16.2 67 21-89 53-139 (318)
337 3das_A Putative oxidoreductase 96.2 0.36 1.2E-05 39.0 26.4 113 6-118 24-160 (347)
338 2ism_A Putative oxidoreductase 96.1 0.42 1.4E-05 38.7 20.1 61 14-74 75-153 (352)
339 2g8s_A Glucose/sorbosone dehyd 95.9 0.54 1.9E-05 38.1 15.6 132 176-314 19-215 (353)
340 3sbq_A Nitrous-oxide reductase 95.8 0.77 2.6E-05 39.4 20.3 267 27-327 72-409 (638)
341 2zwa_A Leucine carboxyl methyl 95.8 1 3.4E-05 40.4 19.1 106 23-129 396-523 (695)
342 2uvk_A YJHT; unknown function, 95.5 0.81 2.8E-05 37.0 15.9 53 24-76 65-128 (357)
343 1cru_A Protein (soluble quinop 95.4 1 3.5E-05 38.0 28.3 60 56-115 27-97 (454)
344 1cru_A Protein (soluble quinop 95.2 1.2 4.2E-05 37.5 19.2 148 175-326 27-259 (454)
345 3sbq_A Nitrous-oxide reductase 94.8 1.7 5.9E-05 37.4 17.2 117 153-271 299-453 (638)
346 2wg3_C Hedgehog-interacting pr 93.9 1.2 4.3E-05 37.5 12.5 20 297-316 139-158 (463)
347 3qhy_B Beta-lactamase inhibito 92.4 3.1 0.00011 32.4 20.6 174 15-203 25-206 (282)
348 4gq2_M Nucleoporin NUP120; bet 91.6 4.7 0.00016 37.7 14.1 36 256-291 239-274 (950)
349 3q6k_A 43.2 kDa salivary prote 89.9 7 0.00024 31.9 21.0 208 15-239 27-306 (381)
350 2zwa_A Leucine carboxyl methyl 89.8 11 0.00037 33.9 21.6 185 141-327 397-636 (695)
351 2wg3_C Hedgehog-interacting pr 86.0 15 0.0005 31.1 31.1 53 56-108 14-79 (463)
352 3uc1_A DNA gyrase subunit A; D 83.9 15 0.00051 29.3 19.5 115 208-326 94-228 (327)
353 3q6k_A 43.2 kDa salivary prote 83.8 17 0.00057 29.8 19.4 162 153-315 124-342 (381)
354 3s25_A Hypothetical 7-bladed b 83.6 14 0.00049 29.0 21.8 100 19-128 58-176 (302)
355 4gq2_M Nucleoporin NUP120; bet 83.5 30 0.001 32.5 18.9 38 209-246 236-273 (950)
356 3s25_A Hypothetical 7-bladed b 80.2 20 0.00067 28.2 27.1 95 216-324 191-291 (302)
357 3zwu_A Alkaline phosphatase PH 79.0 11 0.00036 33.0 8.7 58 16-73 478-548 (592)
358 4fhn_B Nucleoporin NUP120; pro 78.4 8.9 0.0003 36.7 8.9 38 210-247 239-276 (1139)
359 4a9v_A PHOX; hydrolase, beta-p 77.9 18 0.0006 31.5 9.5 61 14-74 476-549 (592)
360 3qhy_B Beta-lactamase inhibito 77.5 23 0.00078 27.5 24.9 208 57-284 25-247 (282)
361 3no0_A DNA gyrase subunit A; D 76.7 24 0.00082 27.3 21.9 119 7-128 14-146 (276)
362 3b7f_A Glycosyl hydrolase, BNR 76.7 29 0.001 28.3 30.1 97 26-124 23-143 (394)
363 4fhn_B Nucleoporin NUP120; pro 75.6 2.2 7.5E-05 40.8 3.9 38 15-52 239-276 (1139)
364 3zwu_A Alkaline phosphatase PH 73.9 13 0.00046 32.4 8.0 55 259-314 482-548 (592)
365 3f7f_A Nucleoporin NUP120; nuc 70.6 8.1 0.00028 34.5 5.9 38 14-53 222-259 (729)
366 4a9v_A PHOX; hydrolase, beta-p 70.1 31 0.0011 30.0 9.1 60 57-116 477-549 (592)
367 3b7f_A Glycosyl hydrolase, BNR 69.1 45 0.0015 27.1 21.0 64 173-236 53-144 (394)
368 1zi0_A DNA gyrase subunit A; b 68.0 42 0.0014 26.4 27.1 173 65-238 1-225 (307)
369 1suu_A DNA gyrase subunit A; t 66.1 47 0.0016 26.2 26.4 174 65-239 6-231 (312)
370 3uc1_A DNA gyrase subunit A; D 64.6 52 0.0018 26.2 24.5 141 141-283 108-279 (327)
371 3l6v_A GYRA, DNA gyrase subuni 55.7 82 0.0028 25.6 26.9 175 64-239 4-265 (370)
372 1q47_A Semaphorin 3A; beta pro 52.7 78 0.0027 27.0 8.6 56 266-321 423-487 (495)
373 3al9_A Plexin-A2; beta-propell 50.1 45 0.0015 28.8 6.8 68 253-320 402-474 (539)
374 3kci_A Probable E3 ubiquitin-p 50.0 1E+02 0.0035 25.0 25.3 211 67-283 62-345 (389)
375 1wp5_A Topoisomerase IV; broke 41.7 1.3E+02 0.0044 23.8 26.5 174 65-239 3-225 (323)
376 4hvt_A Ritya.17583.B, post-pro 39.7 2.1E+02 0.0073 25.8 16.8 55 272-327 318-382 (711)
377 4gz8_A Semaphorin-3A; multi-do 38.6 1.1E+02 0.0037 27.3 7.5 56 266-321 431-495 (667)
378 3mez_B Mannose-specific lectin 36.2 85 0.0029 20.1 10.0 47 101-158 59-105 (113)
379 1q47_A Semaphorin 3A; beta pro 36.1 2E+02 0.007 24.5 9.4 67 57-123 405-487 (495)
380 3nvq_A Semaphorin-7A; beta-pro 33.9 1.1E+02 0.0038 26.7 6.7 56 266-321 382-444 (590)
381 3mez_B Mannose-specific lectin 33.7 94 0.0032 19.9 8.9 25 179-204 60-84 (113)
382 1sr4_A CDT A, cytolethal diste 33.4 62 0.0021 23.6 4.3 67 222-291 99-167 (206)
383 3f7f_A Nucleoporin NUP120; nuc 32.5 2.8E+02 0.0097 25.0 19.5 32 217-248 228-259 (729)
384 3al9_A Plexin-A2; beta-propell 32.2 2.1E+02 0.0072 24.7 8.2 68 14-81 400-476 (539)
385 3no0_A DNA gyrase subunit A; D 30.5 1.8E+02 0.0063 22.3 24.2 71 209-282 166-245 (276)
386 3ol2_B Plexin-B1; beta-propell 30.5 1.5E+02 0.0052 25.5 7.0 68 253-321 389-461 (528)
387 1suu_A DNA gyrase subunit A; t 30.2 2E+02 0.0068 22.6 27.0 179 23-204 6-231 (312)
388 3mez_A Mannose-specific lectin 29.8 1.1E+02 0.0038 19.5 8.0 25 179-203 53-77 (111)
389 2cn3_A Xyloglucanase, beta-1,4 29.4 3.2E+02 0.011 24.7 11.4 102 14-116 23-151 (737)
390 3ge2_A Lipoprotein, putative; 27.8 1.3E+02 0.0044 19.7 5.5 42 45-89 72-113 (130)
391 1xks_A Nuclear pore complex pr 27.2 2.8E+02 0.0096 23.3 14.8 96 175-284 143-238 (450)
392 1zi0_A DNA gyrase subunit A; b 25.0 2.5E+02 0.0085 22.0 27.1 178 23-203 1-225 (307)
393 4hvt_A Ritya.17583.B, post-pro 23.7 4.1E+02 0.014 24.0 25.6 96 228-325 318-429 (711)
394 4h3o_A Lectin; cadmium, plant 23.3 1.5E+02 0.005 18.7 10.1 46 102-158 54-99 (105)
395 1zvt_A Topoisomerase IV subuni 23.2 2.5E+02 0.0084 21.3 16.4 73 208-283 83-163 (256)
396 1wp5_A Topoisomerase IV; broke 23.2 2.8E+02 0.0096 21.9 23.5 72 56-128 92-174 (323)
397 1olz_A Semaphorin 4D; developm 21.9 2.8E+02 0.0097 24.7 7.3 56 266-321 417-477 (663)
398 1sqj_A OXG-RCBH, oligoxylogluc 21.1 4.8E+02 0.016 23.8 24.3 61 13-74 14-83 (789)
399 3nvq_A Semaphorin-7A; beta-pro 21.0 3.7E+02 0.013 23.6 7.6 67 15-81 363-444 (590)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-53 Score=355.90 Aligned_cols=281 Identities=20% Similarity=0.333 Sum_probs=252.5
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++++..+.+|...|.+++|+|++++|++++.|+.|++||++++. .+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---------------------------------~~ 227 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---------------------------------CV 227 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---------------------------------EE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------------------EE
Confidence 999999999999999999999999999999999999999987654 11
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccC------------------
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRD------------------ 219 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~------------------ 219 (341)
..+. .+...+..+.++|++.++++++ ++.+++|++.... |...+.+++|+|+
T Consensus 228 ~~~~--~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 228 KTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EEEE--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EEEe--CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 1111 1344577888888888877765 5788888876542 6778899999886
Q ss_pred --CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 220 --CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 220 --~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
+.+|++|+.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.||.|++||+.+++++..+. .|..
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v--~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~ 381 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEH 381 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCC
Confidence 6789999999999999999999999999999999888 899999999999999999999999999999998 8999
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
.|++++|+|++++|++++ |+.|++|+++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 9999999863
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-52 Score=337.64 Aligned_cols=288 Identities=21% Similarity=0.316 Sum_probs=249.9
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
|+++..++|++|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|+
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CcceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCC--CceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~--~~~~~~~~ 149 (341)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. ...+.++.+.+ +..+++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987652 23344444443 35777888
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc--CCCEEEEee
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR--DCQCILTCS 227 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 227 (341)
.|+.|++||++.......+... +...+..+.++| ++.+|++++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTG-----------------------------------QERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECC-----------------------------------CTTCEEEEEECCSTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCccceeccC-----------------------------------CcCcEEEEEEEEcCCCCEEEEEc
Confidence 8888888887665543333211 234566677765 678999999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.||+|++||+.+++.+..+. .|...+.+++|+|+
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPT 281 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEE--EECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTT
T ss_pred CCCeEEEEeCCCCccceeeCCCCCCEEEE--EECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCC
Confidence 99999999999999999999999999887 899999999999999999999999999999988 78889999999998
Q ss_pred Cc--EEEEeCCCcEEEEEcccc
Q psy17863 308 RK--HIMSACGNNVKLWTAEED 327 (341)
Q Consensus 308 ~~--~l~~~~d~~i~vw~~~~~ 327 (341)
+. ++++++++.+.+|++.++
T Consensus 282 ~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 282 GRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CGGGCEEEEETTEEEEEECC--
T ss_pred CCceEEEEecCCceEEEEeccC
Confidence 75 577777778999988764
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-52 Score=368.12 Aligned_cols=318 Identities=18% Similarity=0.243 Sum_probs=269.2
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
.++++++.+|.+.|++++|+|+|++||+|+.|++|++||..+++.+..+. +|.+.|.+++|+|++++|++++.
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence 56778999999999999999999999999999999999999998888874 79999999999999999999999
Q ss_pred CCcEEEEECCCCceee-------------------------------------------eecccCccEEEEEEcCCCcEE
Q psy17863 76 DKSVILWEVTTGQPVR-------------------------------------------RWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~~~l 112 (341)
|++|++||+.+++++. .+.+|...|++++|+|++++|
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 9999999998876543 334788999999999999999
Q ss_pred EEecCCCeEEEEEecCCC---------CcCeEEeecCCCceEEEeeccCeEEEEEccCCccee-------------e---
Q psy17863 113 ISGSQDNTVMMWDVKSRS---------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS-------------T--- 167 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~-------------~--- 167 (341)
++++.|+.|++||+.++. ...+..+.+.+++.+++++.|+.+++|+........ .
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 999999999999988653 234555566677899999999999999976533210 0
Q ss_pred ----------------------eEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc--------cCCCCeEEEEE
Q psy17863 168 ----------------------LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED--------YGQEPIVDACF 216 (341)
Q Consensus 168 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--------~~~~~i~~~~~ 216 (341)
.........+.+++++|+++++++++ ++.+++|++... .|...|.+++|
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~f 499 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 499 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEE
Confidence 00001234578999999999999887 489999998652 37889999999
Q ss_pred ccCCCEEEEeecCCeEEEEeccc-cceeee--ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-e-EEEE
Q psy17863 217 TRDCQCILTCSTDECLRLFDKAT-GELLEE--YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-I-STLI 291 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~ 291 (341)
+|+|++|++++.|+.|++||+.+ ++.... +.+|...|..+ +|+|++++|++|+.|++|++|++.+++. . ..+.
T Consensus 500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v--~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~ 577 (611)
T 1nr0_A 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV--SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE--EECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence 99999999999999999999987 665544 34599999888 8999999999999999999999988753 3 3444
Q ss_pred eeee-ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 292 HSVG-KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 292 ~~~~-~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+| ...|.+++|+|+++ |++++ |++|++|+++
T Consensus 578 --~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 578 --AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp --SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred --cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 68 78999999999999 99999 9999999973
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-52 Score=337.80 Aligned_cols=282 Identities=18% Similarity=0.293 Sum_probs=250.0
Q ss_pred eeeEEeeeCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+.+.+++|.++|++++|+|+ +++|++|+.|++|++|++.+++ ....+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 44677899999999999985 6799999999999999987664 34568899999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++++++.
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--------------------------- 156 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--------------------------- 156 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---------------------------
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---------------------------
Confidence 99999999999999999999999999999999999999999999999876541
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
...+ ..+...+.+++|+|+++++++++ ++.+++||+.... +..+|.+++|+|++++|++++.|+
T Consensus 157 ------~~~~--~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 157 ------EYSL--DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp ------EEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred ------eEEe--cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 1111 11334588999999999988876 5889999987643 778999999999999999999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.|++||+++++....+.+|...+..+ +|+|++++|++++.|++|++||+.+++++..+. .|...|.+++|+|++++
T Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~v~~~--~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTLSGHASWVLNV--AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSE
T ss_pred eEEEEECCCcceeEEEcCCCCceEEE--EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCE
Confidence 99999999999999999999999888 899999999999999999999999999999988 89999999999999999
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
|++++ |+.|++||.+
T Consensus 305 l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 305 IVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTCCEEEEECC
T ss_pred EEEEeCCCeEEEEeCC
Confidence 99999 9999999964
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-51 Score=364.01 Aligned_cols=320 Identities=14% Similarity=0.241 Sum_probs=268.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+..++.+|.+.|++++|+|+++ .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4567889999999999999987 599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------------------
Q psy17863 84 VTTGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH------------------------- 131 (341)
Q Consensus 84 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------- 131 (341)
+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+++++.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 99999888774 7999999999999999999999999999999875421
Q ss_pred --------------------------cCeEEe-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC
Q psy17863 132 --------------------------HPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184 (341)
Q Consensus 132 --------------------------~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (341)
..+..+ ..+++..+++++.|++|++||+.+++....+. ..+...+.++++++
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~-~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTS 377 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc-cCCcceEEEEEECC
Confidence 112222 33456689999999999999999876654432 23456688888888
Q ss_pred CCceEEEeCCCceEEEEccccc-----------------------------------------------CCCCeEEEEEc
Q psy17863 185 TRKHIMSACGNNVKLWTAEEDY-----------------------------------------------GQEPIVDACFT 217 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~-----------------------------------------------~~~~i~~~~~~ 217 (341)
++.++..+.++.+++|+..... +...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 8777777777888888754321 23457899999
Q ss_pred cCCCEEEEeecCCeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeee
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSV 294 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 294 (341)
|+|++|++|+.|+.|++||+.+++. +.. .+|...+..+ +|+|++++|++++.|++|++|++.+ ++.........
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v--~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV--AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE--EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE--EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence 9999999999999999999987643 334 6788888888 8999999999999999999999987 54443311224
Q ss_pred eccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|...|.+++|+||+++||+++ |++|++|+++++.
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 899999999999999999999 9999999998654
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-51 Score=334.59 Aligned_cols=282 Identities=20% Similarity=0.352 Sum_probs=247.3
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.+..++|++|.++|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc----eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|++.+++ ....+.+|...|.++.|++++. +++++.|+.|++||+++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~--------------------------- 175 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ--------------------------- 175 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE---------------------------
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc---------------------------
Confidence 9998753 4566788999999999998775 8888899999999987543
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
....+ ..+...+.+++++|+++++++++ ++.+++||+.... |...|.+++|+|++++|++++.|
T Consensus 176 ------~~~~~--~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 176 ------QTTTF--TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ------EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------EEEEE--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 11111 12445689999999999888776 5899999987643 77899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 230 ECLRLFDKATGELLEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+.|++||+++++.+..+..+ ...+..+ +|+|++++|++|+.||.|++||+.+++.+..+. +|..+|.+++|+|+
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~s~d 323 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSV--SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDD 323 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTT
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEE--EECCCCCEEEEECCCCeEEEEEcccCcEeeEee--cCCCcEEEEEEcCC
Confidence 99999999988877776533 2356666 899999999999999999999999999998888 89999999999999
Q ss_pred CcEEEEeC-CCcEEEEE
Q psy17863 308 RKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~ 323 (341)
+++|++++ |+.|++|+
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999 99999996
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-50 Score=330.96 Aligned_cols=281 Identities=16% Similarity=0.288 Sum_probs=243.6
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..++|++|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecC---CCceE
Q psy17863 83 EVTTG------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDS---KDSQI 145 (341)
Q Consensus 83 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~---~~~~~ 145 (341)
++... .....+..|...|.+++|+|++..|++++.|++|++||+++++. ..+.++... ++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98654 34556678999999999999999999999999999999987652 233333322 34689
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
++++.||.|++||+++++....+.. |...|.+++|+|++++|++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~------------------------------------h~~~v~~v~~~p~~~~l~s 257 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFET------------------------------------HESDVNSVRYYPSGDAFAS 257 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC------------------------------------CCCCeEEEEEeCCCCEEEE
Confidence 9999999999999988765544321 3567889999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
++.|++|++||++.++.+..+..+. ..+..+ +|+|++++|++|+.|+.|++||+.+++.+..+. +|...|++++
T Consensus 258 ~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~--~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~ 333 (354)
T 2pbi_B 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSV--DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLR 333 (354)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCcccceeEE--EEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEE
Confidence 9999999999999888777665443 244444 899999999999999999999999999988887 8999999999
Q ss_pred EcCCCcEEEEeC-CCcEEEEE
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~ 323 (341)
|+|++++|++++ |+.|++|+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999 99999995
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.1e-50 Score=324.52 Aligned_cols=286 Identities=28% Similarity=0.527 Sum_probs=252.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
++...++.+|.++|++++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
|+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------- 141 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------------------------------- 141 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-------------------------------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-------------------------------
Confidence 9999999999999999999999999999999999999999999876541
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
...+ ..+...+.+++++|+++++++++ ++.+++||+.... +..++..++|+|+++++++++.|+.|+
T Consensus 142 --~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 142 --LKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp --EEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred --EEEe--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 1111 11345688899999998887776 5889999987543 456799999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEe-CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
+||+++++.+..+.+|......+...+ .+++.+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIA 295 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEE
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceE
Confidence 999999999999998887655443344 3678899999999999999999999998888 8999999999999999999
Q ss_pred EeC---CCcEEEEEcc
Q psy17863 313 SAC---GNNVKLWTAE 325 (341)
Q Consensus 313 ~~~---d~~i~vw~~~ 325 (341)
+++ |+.|++|+.+
T Consensus 296 s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 296 SAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECTTTCCEEEEECC
T ss_pred EEEccCCccEEEecCC
Confidence 884 8999999964
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-50 Score=330.02 Aligned_cols=298 Identities=19% Similarity=0.326 Sum_probs=241.8
Q ss_pred CceeeeEEeeeCC-cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee---EecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 2 EYTCVQTIDCKQG-AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK---TYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 2 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
++++++++++|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4678899999998 99999999999999999999999999988775432 2368999999999999999999999999
Q ss_pred cEEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 78 SVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 78 ~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
++++|++..+ +.+..+.+|...|.+++|+|++++|++++.|+.|++||++......
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---------------------- 141 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE---------------------- 141 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE----------------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE----------------------
Confidence 9999998876 4577889999999999999999999999999999999997643100
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc---------cCCCCeEEEEEccCCCEEEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED---------YGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~ 225 (341)
.... ...+...+.+++|+|+++++++++ ++.+++|+.... .|...|.+++|+|++++|++
T Consensus 142 --------~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 142 --------CVSV--LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp --------EEEE--ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --------EEEE--ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 0001 112445689999999999988876 589999998653 27889999999999999999
Q ss_pred eecCCeEEEEecccc---------------ceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC----
Q psy17863 226 CSTDECLRLFDKATG---------------ELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS---- 285 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 285 (341)
++.|++|++||.... +++..+.+ |...+..+ +|++++..|++++.|+.|++|+...+.
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 289 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI--AWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE--EECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE--EEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence 999999999996422 23344444 77778877 899999999999999999999987643
Q ss_pred ceEEEE---eeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEcccccCCccc
Q psy17863 286 QISTLI---HSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 286 ~~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
+...+. ..+|...|++++|+|++. +||+++ ||+|++|++.+.......
T Consensus 290 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 122221 126889999999999984 999999 999999999887655443
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-49 Score=349.15 Aligned_cols=313 Identities=27% Similarity=0.450 Sum_probs=270.2
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..++|++|++.|++++|+|||++||+|+.|+.|+|||. +++++.++.+|...|++++|+|++++|++++.|++|++|
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3566789999999999999999999999999999999995 788899999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------------------------------
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------------------------------- 130 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------------------- 130 (341)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 95 678889999999999999999999999999999999999965321
Q ss_pred ----------------CcCeE-EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 131 ----------------HHPIQ-CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 131 ----------------~~~~~-~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
...+. ....+.+..+++++.|+.+++||.. .+....+.. +...+.+++++|+++.+++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~ 240 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG--HSSSVRGVAFSPDGQTIASAS 240 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEEC--CSSCEEEEEECTTSSCEEEEE
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEec--CCCCEEEEEECCCCCEEEEEe
Confidence 01111 2233445578999999999999953 444444433 456799999999999888776
Q ss_pred -CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 194 -GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 194 -~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
++.+++|+..... +...+.+++|+|+++.+++++.|+.|++||.. ++.+..+.+|...+..+ +++|++++
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~--~~~~~~~~ 317 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFSPDGQT 317 (577)
T ss_dssp TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE--EECTTSSE
T ss_pred CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEE--EECCCCCE
Confidence 5899999975432 77899999999999999999999999999964 67788899999999887 89999999
Q ss_pred EEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+++++.||.|++||.. ++.+..+. .|...|.+++|+|++++|++++ |+.|++|+...
T Consensus 318 l~t~~~d~~i~~w~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 318 IASASDDKTVKLWNRN-GQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred EEEEeCCCeEEEEeCC-CCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 9999999999999964 55566666 7899999999999999999999 99999999654
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-49 Score=346.76 Aligned_cols=311 Identities=27% Similarity=0.443 Sum_probs=272.4
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.+++..+.+|...|++++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 34677889999999999999999999999999999999996 56778889999999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------CCcCeEEee-cCCCceEEEeeccCe
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCL-DSKDSQIFCGSSDGK 153 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~g~ 153 (341)
||.. ++.+..+..|...+.+++|+|++++|++++.|+.+++||.... ....+..+. .+++..+++++.|+.
T Consensus 330 w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 330 WNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 9975 4556778889999999999999999999999999999996532 123344444 455668999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEe
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~ 226 (341)
|++||.. .+.+..+.. +...+.+++++|+++++++++ ++.+++|+..... |..++.+++|+|++++|+++
T Consensus 409 v~~~~~~-~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 409 VKLWNRN-GQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp EEEECTT-CCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCC-CCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 9999953 444444433 456799999999999998876 5899999976432 78899999999999999999
Q ss_pred ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
+.|+.|++||. +++.+..+.+|...+..+ +|+|++++|++++.||.|++||. +++++..+. +|...|++++|+|
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGV--AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSP 559 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEE--EECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECT
T ss_pred eCCCEEEEEcC-CCCEEEEEeCCCCCEEEE--EEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcC
Confidence 99999999995 688899999999999888 89999999999999999999995 788888888 8999999999999
Q ss_pred CCcEEEEeC-CCcEEEEE
Q psy17863 307 TRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~ 323 (341)
|+++|++++ |++|++||
T Consensus 560 dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEeCCCEEEEeC
Confidence 999999999 99999997
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-49 Score=323.25 Aligned_cols=285 Identities=19% Similarity=0.322 Sum_probs=238.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCC-----cceeeEecCcccceeEEEEecCCCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYR-----NLLLKTYGGHAHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (341)
+.+..+|++|.++|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 35677999999999999999965 8999999999999999764 34567889999999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------CcCeEEeecCC-------C
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCLDSK-------D 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~-------~ 142 (341)
++|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++... ...+..+...+ .
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------C
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999987532 12233333322 2
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
..+++++.|+.|++||+++.+....+. .|..+|.+++|+|++++
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~------------------------------------~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFI------------------------------------GHNSNINTLTASPDGTL 210 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC------------------------------------CCCSCEEEEEECTTSSE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeec------------------------------------CCCCcEEEEEEcCCCCE
Confidence 368888889999999887754433322 14677899999999999
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe------eeec
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------SVGK 296 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~ 296 (341)
|++++.|+.|++||+.+++.+..+..+ ..+..+ +|+|++.++++++.+ .+++|++.....+..+.. ..+.
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~--~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL--AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE--EECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE--EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcC
Confidence 999999999999999999998888765 456666 899999999988755 599999987766665541 1345
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
..+.+++|+|||++|++++ |+.|++|++.+.
T Consensus 287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6799999999999999999 999999998763
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-50 Score=337.35 Aligned_cols=288 Identities=19% Similarity=0.333 Sum_probs=243.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
..+.++|++|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc-------eeeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCC-------------cCeEEeec-C
Q psy17863 83 EVTTGQ-------PVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSH-------------HPIQCCLD-S 140 (341)
Q Consensus 83 ~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~-~ 140 (341)
++.+.. ....+.+|.+.|.++.|.|+ +..|++++.|++|++||+++++. ..+..+.. +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 987532 34567889999999999996 55799999999999999987542 12222222 2
Q ss_pred -CCceEEEeeccCeEEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc
Q psy17863 141 -KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR 218 (341)
Q Consensus 141 -~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 218 (341)
.+..+++|+.|+.|++||++.. +....+. .|...|.+++|+|
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~------------------------------------~h~~~v~~v~~~p 259 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYH------------------------------------GHEGDINSVKFFP 259 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEEC------------------------------------CCSSCCCEEEECT
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEEC------------------------------------CcCCCeEEEEEec
Confidence 4567888888889999988743 2222221 1467799999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCccc-------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKS-------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++++|++++.|++|++||+++++.+..+..+.. .+..+ +|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 260 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV--AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE--EECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE--EECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence 999999999999999999999988887765432 25555 899999999999999999999999988887773
Q ss_pred --eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 292 --HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 292 --~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..+|...|++++|+|++++|++|+ |++|++|++....
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 127899999999999999999999 9999999998653
No 14
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-49 Score=335.49 Aligned_cols=308 Identities=17% Similarity=0.226 Sum_probs=268.1
Q ss_pred eeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcC----CCcc------eeeEecC----------cccceeEEEEecCCC
Q psy17863 10 DCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNP----YRNL------LLKTYGG----------HAHEVNDATAACDSS 68 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~ 68 (341)
..|.++|++++|+|+++ +||+|+.||.|++|++ .+++ ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 9999999999999999 8877 4555544 678999999999999
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cC-------
Q psy17863 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HP------- 133 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~------- 133 (341)
+|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++. ..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 67888889999999999999999999999999999999999977542 11
Q ss_pred --------eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 134 --------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 134 --------~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+..+.+.+++.+++++.+|.|++||+.+.+....+.. +...+.+++++|+++++++++ ++.+++|++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG--HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 4444455677899999999999999999877766643 456799999999999888877 58999999876
Q ss_pred cc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 205 DY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.. +...+.+++|+|++ ++++++.|+.|++||+++++.+..+..|...+..+ +++|++++|++++.||.|+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG--RISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE--EECTTSSEEEEEETTSCEE
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE--EEcCCCCEEEEEECCCeEE
Confidence 43 77899999999999 99999999999999999999999999999988887 8999999999999999999
Q ss_pred EEeeeCCC--------------------ceEEEEeeeecc--ceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 278 KWQLVDSS--------------------QISTLIHSVGKA--VVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 278 iwd~~~~~--------------------~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+||+.+++ .+..+. .|.. .|++++|+|++++|++++ ||.|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ--SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEEC--CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhc--CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999887 677776 6755 999999999999999999 9999999986
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-48 Score=321.65 Aligned_cols=285 Identities=18% Similarity=0.276 Sum_probs=231.2
Q ss_pred ceeeeEEeeeCCcEEEEEE-----cc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCCCE
Q psy17863 3 YTCVQTIDCKQGAIRAVRF-----NV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDSSQ 69 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 69 (341)
+++..+|++|.+.|++++| ++ ++++|++|+.|++|++||+.+. .+...+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4577899999999999999 77 8999999999999999998643 456778899999999999999999
Q ss_pred EEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC----------CCcCeEEeec
Q psy17863 70 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR----------SHHPIQCCLD 139 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~ 139 (341)
+++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ....+.++.+
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999998632 1223444444
Q ss_pred CCC-----------ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCC
Q psy17863 140 SKD-----------SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 208 (341)
Q Consensus 140 ~~~-----------~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 208 (341)
.+. ..+++++.||.|++||.. .+....+. .|.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~------------------------------------~h~ 213 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK------------------------------------AHE 213 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE------------------------------------CCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc------------------------------------Ccc
Confidence 333 478888888888888832 22111111 145
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
..|.+++|+|+|++|++++.|+.|++||+.. ......+. +...+..+ +|+|++++++++ .|+.|++|++.+++..
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v--~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI--AFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE--EECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE--EECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 6789999999999999999999999999844 34444443 34456666 899999877655 6888999999887665
Q ss_pred E--EEEe---------eeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 288 S--TLIH---------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 288 ~--~~~~---------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
. .+.. .+|...|.+++|+|++++|++|+ ||.|++|+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 4 3321 14677899999999999999999 9999999987653
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-49 Score=327.91 Aligned_cols=284 Identities=14% Similarity=0.192 Sum_probs=223.2
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeC------CCeEEEEcCCCccee----eEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGS------DKKIKLWNPYRNLLL----KTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~------dg~i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
...+|.+.|++++|+|||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 34579999999999999999999997 788999998776533 33456888999999999985 55678899
Q ss_pred cEEEEECCCCceeee----ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCC--c
Q psy17863 78 SVILWEVTTGQPVRR----WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKD--S 143 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~--~ 143 (341)
+|++||+.+++.... ..+|...|++++|+|++++|++++.|+.|++||+++++ ...+..+.+.++ .
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999988865432 34789999999999999999999999999999998754 234444544433 4
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQC 222 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~ 222 (341)
.+++++.||.|++||+++++....+.... +...+.+++|+|+ +.+
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~----------------------------------~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCA----------------------------------SDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTT----------------------------------CCSCEEEEEECTTSTTE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeecc----------------------------------ccccccchhhhhcccce
Confidence 78999999999999999877665443222 2455777888886 467
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
|++|+.|+.|++||+++++.+..+.+|...+..+ +|+|++ ++|++|+.||+|+|||+++++.+..+ +|...|++
T Consensus 242 la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l--~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~ 316 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL--AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTG 316 (357)
T ss_dssp EEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEE
T ss_pred EEEeecccceeEEECCCCcEeEEEeccceeEEEE--EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEE
Confidence 8899999999999999999999999999999888 889987 57999999999999999988776554 69999999
Q ss_pred EEEcC-CCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 302 LCSHP-TRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 302 ~~~~~-~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++|+| ++++|++++ |++|++|+++......
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 99998 799999999 9999999998765443
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-48 Score=324.85 Aligned_cols=283 Identities=18% Similarity=0.313 Sum_probs=238.2
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc------------------ceeEEEEecCCCEEEE
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH------------------EVNDATAACDSSQIAS 72 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~ 72 (341)
+|.+.|++++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999977 78999999999998888765542 3899999999999999
Q ss_pred ecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------cCeEEeec-C-CCc
Q psy17863 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------HPIQCCLD-S-KDS 143 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~-~~~ 143 (341)
|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+.. + .+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999987642 22333333 3 456
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.|+.|++||+++++....+..... ....|...|.+++|+|++++|
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-----------------------------~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENE-----------------------------SGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------CCCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeeccccc-----------------------------CCCCCCCCEEEEEECCCCCEE
Confidence 899999999999999988765544321100 001256789999999999999
Q ss_pred EEeecCCeEEEEecccc------------ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 224 LTCSTDECLRLFDKATG------------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++++.|+.|++||+++. .+...+.+|...+..+ ++++++++|++|+.||.|++||+.+++++..+.
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV--ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE--EECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE--EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 99999999999998753 3456778899888877 899999999999999999999999999998888
Q ss_pred eeeeccceEEEEEcC------CCcEEEEeC-CCcEEEEEcccc
Q psy17863 292 HSVGKAVVNSLCSHP------TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~------~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+|...|.+++|++ ++.+|++++ |+.|++|++.+.
T Consensus 350 --~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 350 --GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp --CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred --CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 8999999999986 689999999 999999998754
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-47 Score=312.83 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=227.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEe-cC-cccceeEEEEecCCCEEEEecCCCc
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTY-GG-HAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
++++++|++|.++|.+++|+|+ +||+|+.|++|++||+.++ +....+ .. |...|.+++|+|++++|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 6788999999999999999988 9999999999999999875 445555 44 9999999999999999999999999
Q ss_pred EEEEECCC-------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 79 VILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 79 i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
|++||++. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||++.....
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~------------------- 142 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE------------------- 142 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC-------------------
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC-------------------
Confidence 99999853 3456778899999999999999999999999999999998542200
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc---------cCCCCeEEEEEccC--
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED---------YGQEPIVDACFTRD-- 219 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~-- 219 (341)
.+.+..+ ..+...+.+++|+|++.++++++ ++.+++|+.... .|...|.+++|+|+
T Consensus 143 ----------~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 143 ----------YECISVL--QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp ----------CEEEEEE--CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred ----------eEEEEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 0011111 22456799999999999998887 589999997643 27889999999998
Q ss_pred CCEEEEeecCCeEEEEecccc--------ceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc--eE
Q psy17863 220 CQCILTCSTDECLRLFDKATG--------ELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--IS 288 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 288 (341)
+.+|++++.|++|++||+..+ .....+.. |...+..+ +|++++ +|++++.||.|++|+..+++. ..
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV--AWGFNG-LIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE--EECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE--EEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence 778999999999999998765 34455554 88888888 777654 899999999999999987742 22
Q ss_pred EEEeeeecc-ceEEEEEcC--CCcEEEEeC-CCcEEEEEccc
Q psy17863 289 TLIHSVGKA-VVNSLCSHP--TRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 289 ~~~~~~~~~-~v~~~~~~~--~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.. ...|.. .|.+++|+| ++++|++++ ||.|++|++++
T Consensus 288 ~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 KR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cc-ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 22 125666 899999999 789999999 99999999865
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-48 Score=319.99 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=222.1
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-----------cceeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-----------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
..|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35778899999999999999887 77788887321 11112222366789999999985 6889999999
Q ss_pred EEEEECCCCceeeee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCC--ce
Q psy17863 79 VILWEVTTGQPVRRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKD--SQ 144 (341)
Q Consensus 79 i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~--~~ 144 (341)
|++||+++++.+..+ .+|...|++++|+|++++|++++.|+.|++||+++++ ...+..+.+.++ ..
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999998765443 4799999999999999999999999999999998754 234555554443 36
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCI 223 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l 223 (341)
+++++.|++|++||+++++....+....+ ...+.+++|+|+ ++++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAP----------------------------------GYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC--------------------------------------CCCEEEEEECSSCTTEE
T ss_pred eeeeccccccccccccccceeeeeeccee----------------------------------eccceeeeecCCCCcce
Confidence 88999999999999999887666543322 345667777774 5678
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
++|+.|+.|++||+++++++..+.+|...|..+ +|+|++ ++|++|+.|++|+|||+.+++.. .+. +|.+.|+++
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v--~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~--~H~~~V~~v 305 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL--VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ--AHRDFVRDA 305 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEECCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC--CCSSCEEEE
T ss_pred EEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE--EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc--CCCCCEEEE
Confidence 899999999999999999999999999999988 899987 57999999999999999887654 444 899999999
Q ss_pred EEcCCCc-EEEEeC-CCcEEEEEcccccCC
Q psy17863 303 CSHPTRK-HIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 303 ~~~~~~~-~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|+|+++ +|++++ |++|++|+++++..+
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 9999986 567888 999999999876544
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-47 Score=313.83 Aligned_cols=298 Identities=17% Similarity=0.282 Sum_probs=260.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
....+|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCC-----CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-----NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
+.+++.+..+. +...+.+++|+|+++++++++.+ +.|.+||++..........
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--------------------- 160 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK--------------------- 160 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE---------------------
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc---------------------
Confidence 99999998888 88999999999999999999998 9999999987653221111
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-c-------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-Y-------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~-------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
........+..+.....+.+++++|+++.+++++ ++.+++||+... . +...+.+++|+|++++|++++.|
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 161 -VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp -ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 1112222333333334799999999999888876 589999999872 2 78899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC--------------cEEEEeeeCCCceEEEEeeee
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--------------KIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~ 295 (341)
+.|++||+++++.+..+. +...+..+ +++|+++++++++.++ .+++||..+++.+..+. .|
T Consensus 240 ~~i~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~ 314 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYE-TDCPLNTA--VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GH 314 (369)
T ss_dssp SEEEEEETTTCCEEEEEE-CSSCEEEE--EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CC
T ss_pred ceEEEEECCCCceeeeec-CCCCceeE--EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cc
Confidence 999999999999888887 56666666 8999999999999888 89999999999999988 89
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
...|++++|+|++++|++++ ||.|++|+++++..
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 99999999999999999999 99999999987653
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-49 Score=331.41 Aligned_cols=313 Identities=16% Similarity=0.243 Sum_probs=264.0
Q ss_pred eCCcEEEEEEccCCC-EEEEE----------eCCCeEEEEcCCCcc---eeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 12 KQGAIRAVRFNVDGS-YCLTC----------GSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 12 h~~~v~~~~~~~~~~-~l~t~----------~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
+...|.+++|+|+++ +|++| +.|+.|++||+.+++ .+..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 446789999999987 99999 889999999998876 33344 4889999999999999999999999
Q ss_pred cEEEEECCC----CceeeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCC------C-----------cCeE
Q psy17863 78 SVILWEVTT----GQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS------H-----------HPIQ 135 (341)
Q Consensus 78 ~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~-----------~~~~ 135 (341)
.|++||+.+ .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+++.+ . ..+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4578888999999999999998 8999999999999999998764 1 1233
Q ss_pred EeecCC--CceEEEeeccCeEEEEEccCCcceeeeEeeec----CceEEEEEECCCC-ceEEEeCC-C---ceEEEEccc
Q psy17863 136 CCLDSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG----KAVVNSLCSHPTR-KHIMSACG-N---NVKLWTAEE 204 (341)
Q Consensus 136 ~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~-~---~i~~~~~~~ 204 (341)
.+.+.+ +..+++++.||.|++||+++.+....+..... ...+.+++|+|++ .+++++.. + .+++||+..
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 344444 46899999999999999999887776654321 5679999999997 56666654 5 999999986
Q ss_pred c---------cCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCC
Q psy17863 205 D---------YGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSD 273 (341)
Q Consensus 205 ~---------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d 273 (341)
. .|...+.+++|+| ++++|++++.|+.|++||+++++.+..+.+|...+..+ +|+|++ .+|++++.|
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT--KFAPEAPDLFACASFD 327 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE--EECTTCTTEEEECCSS
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE--EECCCCCCEEEEEecC
Confidence 4 3678899999999 99999999999999999999999999999999999888 899998 899999999
Q ss_pred CcEEEEeeeCCCceEEEE---------------eee------------------eccceEEEEEcCCCcEEEEeC-CCcE
Q psy17863 274 GKIYKWQLVDSSQISTLI---------------HSV------------------GKAVVNSLCSHPTRKHIMSAC-GNNV 319 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~---------------~~~------------------~~~~v~~~~~~~~~~~l~~~~-d~~i 319 (341)
|.|++|++.++....... ... +..++.+++|+|+|++|++++ |+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 999999998765433221 001 566788999999999999999 9999
Q ss_pred EEEEcccc
Q psy17863 320 KLWTAEED 327 (341)
Q Consensus 320 ~vw~~~~~ 327 (341)
+||++.++
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99999864
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-47 Score=310.99 Aligned_cols=285 Identities=21% Similarity=0.345 Sum_probs=237.1
Q ss_pred eeeeEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcc-----eeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
++..+|+||++.|++|+|+|+ +++|+||+.|++|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 456689999999999999997 6899999999999999987543 5667889999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeec---CCCceE
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLD---SKDSQI 145 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~---~~~~~~ 145 (341)
.|++|+............+...+....+++++++|++++.|+.+++||+.... ...+..... .....+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99999999998888888889999999999999999999999999999986532 122333322 233467
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
++++.|+.|++||+++.+....+.. |..+|.+++|+|++++|++
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~------------------------------------h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIG------------------------------------HTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECC------------------------------------CSSCEEEEEECTTSSEEEE
T ss_pred EEEcCCCEEEEEECCCCceeeEecC------------------------------------CCCcEEEEEECCCCCEEEE
Confidence 8888999999999887665544422 3567889999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE-------eeeeccc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-------HSVGKAV 298 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~ 298 (341)
++.|+.|++||+++.+.+..+..+. .+..+ +++|++. +++++.|+.|++||++++..+..+. ...|...
T Consensus 233 ~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~--~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHLYTLDGGD-IINAL--CFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp EETTCEEEEEETTTTEEEEEEECSS-CEEEE--EECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred EeCCCeEEEEEeccCceeeeecCCc-eEEee--ecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999999999999988888654 56655 7888774 5566679999999998877665543 1257889
Q ss_pred eEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 299 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++++|+|++++|++++ ||.|+||++.++.
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999 9999999998864
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.9e-46 Score=330.40 Aligned_cols=317 Identities=15% Similarity=0.182 Sum_probs=265.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecC-CCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACD-SSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~ 78 (341)
+.+..+.+|...|++++|+|+++ ++++++.|+.|++||..+++.+..+..|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 45678889999999999999998 899999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEEECCCCceeeee-c---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC------------cCeEEeecCCC
Q psy17863 79 VILWEVTTGQPVRRW-R---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH------------HPIQCCLDSKD 142 (341)
Q Consensus 79 i~iw~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~ 142 (341)
|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++. .....+..+.+
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 999999999999988 6 899999999999 999999999999999999986541 22333334477
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEee-------------------------------ecCceEEEEEE---------
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHS-------------------------------VGKAVVNSLCS--------- 182 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~--------- 182 (341)
..+++++.+|.+++||+.+.+....+..+ .+...+.++++
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~ 389 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 389 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence 78999999999999998765544333211 01112222222
Q ss_pred -------------------------CCC--------------------------------------CceEEEeC--CCce
Q psy17863 183 -------------------------HPT--------------------------------------RKHIMSAC--GNNV 197 (341)
Q Consensus 183 -------------------------~~~--------------------------------------~~~~~~~~--~~~i 197 (341)
+|+ +++++++. ++.+
T Consensus 390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 469 (615)
T ss_dssp ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE
Confidence 222 23333333 5667
Q ss_pred EEEEcccc--------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC-cccceeEEEEEeCC------
Q psy17863 198 KLWTAEED--------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDS------ 262 (341)
Q Consensus 198 ~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~------ 262 (341)
++|++... .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |...+..+ +|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~ 547 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI--SWKPAEKGAN 547 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE--EECCCC----
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE--EEcCcccccc
Confidence 77776542 2678899999999999999999999999999999999999988 99999888 8999
Q ss_pred ----CCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 263 ----KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 263 ----~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
++++|++++.||.|++||+.++ +++..+. +|...|++++|+|+++ |++++ |+.|++|+++.
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 6777777 8999999999999999 99999 99999999875
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.5e-46 Score=303.99 Aligned_cols=305 Identities=12% Similarity=0.147 Sum_probs=260.2
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.|.++|.+++|+|||++++++..++.+..|.............|...|.+++|+|++++|++++ ||.|++||+.+++..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3667899999999999999988888888887666555555557999999999999999999998 999999999887643
Q ss_pred eee---c--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEe-ecCCCceEEEeeccCeE
Q psy17863 91 RRW---R--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCC-LDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 91 ~~~---~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~-~~~~~~~~~~~~~~g~i 154 (341)
..+ . .|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+ ..+.+..+++++.+|.+
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 333 2 6899999999999999999999999999999987652 223333 34456689999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEee
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~ 227 (341)
++||+++.+....+.. +...+.+++++|+++.+++++ ++.+++||+.... +..++.+++|+|+++++++++
T Consensus 166 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp EEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc
Confidence 9999998877666643 456799999999999888876 5899999987644 678899999999999999999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.++.|++||+++++. ..+..|...+..+ +++|++++|++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK-YQLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVD 317 (337)
T ss_dssp TTSCEEEEETTSSCE-EEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCe-EEEcCCccceeEE--EECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCC
Confidence 999999999988765 4677888888887 89999999999999999999999998887554 47889999999999
Q ss_pred CcEEEEeC-CCcEEEEEc
Q psy17863 308 RKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~ 324 (341)
+++|++++ ||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 99999999 999999996
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.3e-46 Score=352.61 Aligned_cols=319 Identities=20% Similarity=0.354 Sum_probs=278.4
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCC--------CcCeEEe-ecCCCceEEEeeccCeE
Q psy17863 86 TGQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRS--------HHPIQCC-LDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~-~~~~~~~~~~~~~~g~i 154 (341)
+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++ ...+..+ ..+.+..+++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 9999999999999999999999 56689999999999999998754 2334444 44556689999999999
Q ss_pred EEEEccCCcceeeeEeee-----------cCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDAC 215 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~ 215 (341)
++||+.+.+....+.... ....+.+++|+|+++.++++.++.+.+|+..... +...+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 999999887665553211 1235778999999999999999999999987643 778999999
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC------------
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD------------ 283 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------ 283 (341)
|+|+++++++++.|+.|++||+.++..+..+.+|...+..+ +|+|+++++++++.||.|++|++.+
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v--~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV--MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE--EECCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence 99999999999999999999999999999999999998888 8889999999999999888888532
Q ss_pred -------------------------------------------------------------------CCceEEEEeeeec
Q psy17863 284 -------------------------------------------------------------------SSQISTLIHSVGK 296 (341)
Q Consensus 284 -------------------------------------------------------------------~~~~~~~~~~~~~ 296 (341)
++....+. .|.
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--~h~ 1003 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHK 1003 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC--CCS
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc--cCC
Confidence 22222333 577
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..|++++|+|++++|++++ |+.|++|++.++.
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 8999999999999999999 9999999998754
No 26
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=334.65 Aligned_cols=192 Identities=11% Similarity=0.165 Sum_probs=158.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
...+|.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |...|.+++|+| +++|++++.|++|++||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 445899999999999999999999999999999998877666554 788999999999 889999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------------cCeEEeecCCC--ceEE
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------------------HPIQCCLDSKD--SQIF 146 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------------~~~~~~~~~~~--~~~~ 146 (341)
+.+..+. |...|++++|+|++++|++|+.||.|++||+++... ..+..+.+.+. ..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 9988886 778999999999999999999999999999876542 23444445543 5899
Q ss_pred EeeccCeEEEEEccCCcceeeeEee----------------ecCceEEEEEECCCCceEEEeC-CCceEEEEcc
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHS----------------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 203 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 203 (341)
+++.||.+ +||+++.+....+..+ .+...|.+++|+|+++++++++ ++.|++||+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 99999999 9999988766655432 1124578888888887777765 4677777763
No 27
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.9e-45 Score=331.64 Aligned_cols=323 Identities=17% Similarity=0.259 Sum_probs=274.8
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
|.++..+.+.+|.+.|++++|+|++++||+++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|+
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCC--CceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~--~~~~~~~~ 149 (341)
+||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||++++. ...+.++.+.+ +..+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999998752 23455555554 55899999
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECC--CCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP--TRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRD 219 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~ 219 (341)
.||.|++||+........+... ....+..++++| ++..+++++. +.+++|+..... +...+.+++|+|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 9999999999887776666543 335688999999 8888888874 899999987643 7789999999999
Q ss_pred CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeCCCceEEEE-------
Q psy17863 220 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI------- 291 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~------- 291 (341)
++++++++.||.|++||+.+++.+..+..|...+..+ +++|++.. +++.+.++.+.+|++........+.
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVW 317 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE--EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE--EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEE
Confidence 9999999999999999999999999999998888887 88999873 2444456678888876543222111
Q ss_pred ----------------------------------eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 292 ----------------------------------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 292 ----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
...+...+.+++|+|+|+++++++++.+.+|++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 318 SGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp ECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred ECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 01233457889999999999888888999998754
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-45 Score=327.53 Aligned_cols=283 Identities=21% Similarity=0.349 Sum_probs=234.6
Q ss_pred eeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCc-----ceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
+....+++|.+.|++++|+|++ ++|+||+.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556799999999999999875 79999999999999998753 34567889999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-----------CCcCeEEeecCCC---c
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-----------SHHPIQCCLDSKD---S 143 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~---~ 143 (341)
+|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+... ....+.++.+.++ .
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999999999999999999999999999999999999999999999997542 1223455555443 3
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.|+.|++||+++.+....+.. |...|.+++|+|++++|
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~------------------------------------h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAG------------------------------------HTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEeCCCCEE
Confidence 688899999999999887654433321 45678999999999999
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----------
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---------- 293 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 293 (341)
++++.|+.|++||+.+++.+..+..+ ..+..+ +|+|++.++++++ ++.|++||+++++.+..+...
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~--~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL--CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBCS-SCEEEE--EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred EEEeCCCeEEEEECCCCceEEEecCC-CcEEEE--EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence 99999999999999999988887654 456666 8999998877765 566999999998877766410
Q ss_pred -------eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 294 -------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 294 -------~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.+...+++++|+|++++|++++ ||.|++|++..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112378999999999999999 99999999853
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.1e-45 Score=304.54 Aligned_cols=286 Identities=14% Similarity=0.174 Sum_probs=237.0
Q ss_pred CceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEec-CCCEEEEecCCC
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAAC-DSSQIASGASDK 77 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg 77 (341)
+++..+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 356788999999999999999999 999999999999999999888777765 6999999999999 779999999999
Q ss_pred cEEEEECCCCceeeeecc---cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 78 SVILWEVTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.|++||+.+ +.+..+.. |...|.+++|+|++++|++++.|+.|++||++...
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------------ 196 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE------------------------ 196 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE------------------------
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE------------------------
Confidence 999999985 55555543 44889999999999999999999999999984211
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEcccc----------cCCCCeEEEEEcc-CCC
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEED----------YGQEPIVDACFTR-DCQ 221 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----------~~~~~i~~~~~~~-~~~ 221 (341)
...+ ..+...+.+++|+|+++ ++++++ ++.+++||+... .+...+.+++|+| +++
T Consensus 197 ----------~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 197 ----------IFKE--KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST 264 (383)
T ss_dssp ----------EEEE--ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC
T ss_pred ----------EEEe--ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC
Confidence 1111 12445689999999998 666655 588999998862 1678999999999 999
Q ss_pred EEEEeecCCeEEEEeccccceeeeecCccc-------ce--------eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 222 CILTCSTDECLRLFDKATGELLEEYKGHKS-------GD--------FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+|++++.|+.|++||+++++....+.+|.. .+ ..+.++++|++++ +|+.||.|++||+.+++.
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 999999999999999999888777765532 11 1122367777776 888999999999999999
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+..+....+...+..++|+|++++|++++|+.|++|++++
T Consensus 343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 343 VHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 9988743367788888999999999999999999999875
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-45 Score=307.15 Aligned_cols=287 Identities=13% Similarity=0.181 Sum_probs=244.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc------eeeEecCcccceeEEEEecC----C---CEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAACD----S---SQI 70 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l 70 (341)
+..+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45667889999999999999 799999999999999999887 78888899999999999999 9 999
Q ss_pred EEecCCCcEEEEECCCCce-----eeeeccc-----CccEEEEEEc----CCCcE-EEEecCCCeEEEEEecC------C
Q psy17863 71 ASGASDKSVILWEVTTGQP-----VRRWREH-----ASKVTCVKFN----EDSSV-VISGSQDNTVMMWDVKS------R 129 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~ 129 (341)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||++. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5899999999 99999 99999999999999987 3
Q ss_pred CCc--------------------CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 130 SHH--------------------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 130 ~~~--------------------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.. .+..+.+.+++.+++++.+|.|++||+++.+.+..+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------ 226 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ------------------ 226 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC------------------
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecc------------------
Confidence 321 122333333338999999999999999887655544320
Q ss_pred EEeCCCceEEEEcccccC---CCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecC-------------cc
Q psy17863 190 MSACGNNVKLWTAEEDYG---QEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKG-------------HK 250 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~ 250 (341)
..| ..++.+++|+|++++|++++.| +.|++||+++++.+..+.+ |.
T Consensus 227 ---------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 227 ---------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp ---------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred ---------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 002 4578899999999999999999 9999999999999999998 89
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----ee---------------ccceEEEEEcCCC---
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS----VG---------------KAVVNSLCSHPTR--- 308 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~~~~~~~~--- 308 (341)
..+..+ +|+|++++|++++.||.|++||+.+++.+..+... .| ..+|++++|+|++
T Consensus 292 ~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 292 SWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp SCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred CcEEEE--EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 988888 89999999999999999999999999888887611 24 8899999999998
Q ss_pred -------cEEEEeC-CCcEEEEEcccc
Q psy17863 309 -------KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 309 -------~~l~~~~-d~~i~vw~~~~~ 327 (341)
++|++++ ||.|++|+++++
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccceEEEecCCCcEEEEEcCCC
Confidence 7999999 999999999765
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-44 Score=292.00 Aligned_cols=283 Identities=21% Similarity=0.307 Sum_probs=238.2
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++++.+++.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 35788999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC---ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|++... +.+..+..|...|.++.| +++++++++.|+.|++||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~------------------------------ 133 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS------------------------------ 133 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTE------------------------------
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCc------------------------------
Confidence 998765 557778889999999999 567999999999999998211
Q ss_pred ccCCcceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEcccc------cCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEED------YGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
....+ ..+...+.++.+.| ++..+++++ ++.+++||.... .+...+.+++|+|++. +++++.|+
T Consensus 134 -----~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 134 -----LVYNL--QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp -----EEEEE--ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred -----EEEec--ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence 00011 11234466666655 555555544 467777774332 1678899999999999 99999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.|++||+++++.+..+.+|...+..+ +++|++ .+++++.||.|++||+.+++++..+. .|...|.+++|+|++++
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYCI--KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGDI 280 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEE--EECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSCE
T ss_pred eEEEEECCchhhhhhhhcCCceEEEE--EEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCCE
Confidence 99999999999999999999999888 899998 68999999999999999999999988 78889999999999995
Q ss_pred EEEeC-CCcEEEEEcccccCCc
Q psy17863 311 IMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++ ++ ||.|++|+++++....
T Consensus 281 ~~-~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 281 IV-GSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EE-EETTSCEEEEESCGGGCCC
T ss_pred EE-EeCCCcEEEEeCCCCceee
Confidence 54 55 9999999999875443
No 32
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.8e-44 Score=304.39 Aligned_cols=308 Identities=20% Similarity=0.371 Sum_probs=262.4
Q ss_pred eeeeEEeeeCCcE-EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 4 TCVQTIDCKQGAI-RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
+..+.+.+|.+.| .+ +++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||+|++|
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 4567899999875 55 45578999999999999999999999999999999999999997 6699999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|+.+++.+..+.+|...|.++.|+ ++.+++++.||.|++||+++++ ...+.++.. .+..+++++.||.|
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMV 261 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEE
Confidence 999999999999999999999996 5689999999999999998764 233444444 67789999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
++||+++.+....+.. +...+.++.+ ++..+++++ ++.+++||+.... +...+.++.+ ++++++++
T Consensus 262 ~iwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 335 (445)
T 2ovr_B 262 KVWDPETETCLHTLQG--HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSG 335 (445)
T ss_dssp EEEEGGGTEEEEEECC--CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEE
T ss_pred EEEECCCCcEeEEecC--CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEE
Confidence 9999998887766653 4456888888 666666665 6999999997654 5666776665 56799999
Q ss_pred ecCCeEEEEeccccceeeeecC---cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe---eeeccceE
Q psy17863 227 STDECLRLFDKATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH---SVGKAVVN 300 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~ 300 (341)
+.||.|++||+++++.+..+.+ |...+.++ +++ ++++++|+.||.|++||+.+++.+..+.. ..+.+.|.
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE--EEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEE
Confidence 9999999999999999998886 77778777 554 67999999999999999999999888831 25778999
Q ss_pred EEEEcCCCcEEEEeC-CCc----EEEEEccccc
Q psy17863 301 SLCSHPTRKHIMSAC-GNN----VKLWTAEEDY 328 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~-d~~----i~vw~~~~~~ 328 (341)
+++|+|++.++++++ ||+ |.+||++.+.
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999999999999 997 9999998753
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.6e-45 Score=301.03 Aligned_cols=289 Identities=13% Similarity=0.209 Sum_probs=236.6
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEE-EEeC---CCeEEEEcCCCcceeeEe-cCcccceeEEEEecC---CCEEEEecCC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCL-TCGS---DKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACD---SSQIASGASD 76 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~-t~~~---dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d 76 (341)
..+.+++|.+.|++++|+|+++.++ +|+. ||.|++||+.+++..... .+|...|.+++|+|+ +++|++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4456788999999999999996554 5555 899999999988765443 368999999999998 6999999999
Q ss_pred CcEEEEECCCCc-eeeeecccCccEEEEEE------cCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 77 KSVILWEVTTGQ-PVRRWREHASKVTCVKF------NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 77 g~i~iw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
|.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||++++.....
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~--------------- 154 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA--------------- 154 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE---------------
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce---------------
Confidence 999999999988 88899999999999955 67899999999999999999886541111
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEE----ECCCCceEEEeCC-CceEEEEccccc------CCCCeEEEEEcc
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC----SHPTRKHIMSACG-NNVKLWTAEEDY------GQEPIVDACFTR 218 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~i~~~~~~~~~------~~~~i~~~~~~~ 218 (341)
.+..... .....+.+++ ++|+++++++++. +.+++||+.... +...+.+++|+|
T Consensus 155 ------~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 155 ------NMEPVQG---------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDR 219 (357)
T ss_dssp ------EECCCTT---------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESC
T ss_pred ------eccccCC---------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCC
Confidence 0000000 0122466666 7899999988875 899999998754 788999999999
Q ss_pred ---CCCEEEEeecCCeEEEEeccccceeeeec-----CcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCC----
Q psy17863 219 ---DCQCILTCSTDECLRLFDKATGELLEEYK-----GHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS---- 285 (341)
Q Consensus 219 ---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---- 285 (341)
++.++++++.||.|++||+++++.+..+. +|...+..+ +++|+++ ++++++.||.|++||+.++.
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV--RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE--EEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE--EECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 99999999999999999999887766665 899998888 8899998 89999999999999998653
Q ss_pred ---------------ceEEEEeeeeccceEEEEEcCCCcEEE-EeC-CCcEEEEEcccc
Q psy17863 286 ---------------QISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEED 327 (341)
Q Consensus 286 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~ 327 (341)
.+..+. .|..+|++++|+|++++|+ +++ |+.|++|++.+.
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455 7899999999999999998 788 999999999764
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-45 Score=311.13 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=251.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.+++++|+|++++|++++.||.|++||..+++....+..| ..+....|+|++++|++++.||.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3458999999999999999999999999988877777766 455566789999999999999999999999999988888
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEe-ecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+ ..+.+..+++++.||.|++||+++++..
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 9999999999999999999999999999999987542 233433 3445668999999999999999998877
Q ss_pred eeeEeee-cC---------------------ceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEE
Q psy17863 166 STLIHSV-GK---------------------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDA 214 (341)
Q Consensus 166 ~~~~~~~-~~---------------------~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~ 214 (341)
..+.... .. ..+.+++|+|++++++++. ++.+++||+.... +...+.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 7665321 22 3344455688998888876 5899999987643 67889999
Q ss_pred EEccCCC-EEEEeecCCeEEEEeccccce-eeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-----
Q psy17863 215 CFTRDCQ-CILTCSTDECLRLFDKATGEL-LEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----- 286 (341)
Q Consensus 215 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----- 286 (341)
+|+|+++ +|++++.||.|++||+++++. +..+.. |...+..+ +.+++++|++++.||.|++|++...+.
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV---YFAAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE---EEETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE---EeCCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 9999999 999999999999999998754 677776 55555555 445788999999999999999987422
Q ss_pred ----eEEEEeeeeccceEEEEEcCCCc----EEEEeCCCcEEEEEccc
Q psy17863 287 ----ISTLIHSVGKAVVNSLCSHPTRK----HIMSACGNNVKLWTAEE 326 (341)
Q Consensus 287 ----~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~d~~i~vw~~~~ 326 (341)
...+. .+...|.+++|+|+++ +++++++|.+.+|+++.
T Consensus 374 ~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 EFETPTFLV--SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCccEEc--cCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22333 6788999999999999 55555599999999875
No 35
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-44 Score=290.94 Aligned_cols=266 Identities=19% Similarity=0.236 Sum_probs=210.6
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--cceeeEecCcccceeEEEEec--CCCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 81 (341)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+| ++++|++++.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 456789999999999999999999999999999999874 467889999999999999986 3899999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++......
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------ 137 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------ 137 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC------------------------
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee------------------------
Confidence 9998874 55667789999999999997 8899999999999999987642100
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
......+...+.+++|+|++..-.. .....+++++|++|+.|+.|++||+
T Consensus 138 ---------~~~~~~h~~~v~~~~~~p~~~~~~~---------------------~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 138 ---------PIIIDAHAIGVNSASWAPATIEEDG---------------------EHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp ---------CEEEECCSSCEEEEEECCCC---------------------------------CCEEEEEETTSCEEEEEE
T ss_pred ---------eeeeecccCccceEeecCCcccccc---------------------cCCCCCCcceEEEEcCCCcEEEEEE
Confidence 0011123345667777765421100 0001234678999999999999999
Q ss_pred cccc----eeeeecCcccceeEEEEEeCCCC---CEEEEecCCCcEEEEeeeCCCc--e-EEEEeeeeccceEEEEEcCC
Q psy17863 238 ATGE----LLEEYKGHKSGDFRIECCLDSKD---SQIFCGSSDGKIYKWQLVDSSQ--I-STLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 238 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~-~~~~~~~~~~~v~~~~~~~~ 307 (341)
++++ ....+.+|...|..+ +|+|++ ++|++++.|++|++||+.+... . ..+....|...|.+++|+|+
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v--~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 265 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred cCCCceEEEEEEecCCCCceEEE--EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC
Confidence 8765 567889999999888 889984 8999999999999999987532 1 22211257789999999999
Q ss_pred CcEEEEeC-CCcEEEEEcccc
Q psy17863 308 RKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+++||+++ |+.|++|+....
T Consensus 266 g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 266 GNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SCCEEEEETTSCEEEEEECTT
T ss_pred CCEEEEEcCCCcEEEEEECCC
Confidence 99999999 999999998643
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-44 Score=299.64 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=238.1
Q ss_pred CceeeeEEe-eeCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcceeeEecC-----cccceeEEEEecC----C
Q psy17863 2 EYTCVQTID-CKQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAACD----S 67 (341)
Q Consensus 2 ~~~~~~~l~-~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~ 67 (341)
.|++.+.+. +|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +
T Consensus 6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 344444444 89999999999984 45666777788999999998887777654 5577999999998 6
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
++|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------- 149 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---------------- 149 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE----------------
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe----------------
Confidence 7999999999999999999999999999999999999999 99999999999999999987643
Q ss_pred EeeccCeEEEEEccCCcceeeeE-eeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------------------
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------------------ 206 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------------------ 206 (341)
....+. ...+...+.+++|+|+++.+++++ ++.+++||+....
T Consensus 150 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 150 -----------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp -----------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred -----------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 111110 012456799999999999888876 5899999987532
Q ss_pred -----------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce--------------eeeecCcccceeE
Q psy17863 207 -----------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--------------LEEYKGHKSGDFR 255 (341)
Q Consensus 207 -----------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~ 255 (341)
+...|.+++|+ ++++++++.|+.|++||+.+++. +..+..|...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC
T ss_pred cccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE
Confidence 77889999999 77999999999999999887644 7778889888888
Q ss_pred EEEEeCCC--CCEEEEecCCCcEEEEeeeCCCceE----EEEeeee--ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 256 IECCLDSK--DSQIFCGSSDGKIYKWQLVDSSQIS----TLIHSVG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 256 ~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+ +++|+ +++|++|+.||.|++||+.++++.. .+. .| ...|++++|+|++++|++++ ||.|++|++.
T Consensus 291 ~--~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 291 M--RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT--HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp C--CCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred E--EEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc--ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 8 66666 9999999999999999999887543 454 44 78999999999999999999 9999999985
No 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.9e-44 Score=339.55 Aligned_cols=322 Identities=18% Similarity=0.334 Sum_probs=277.9
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec--CCCEEEEecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 80 (341)
.+++.++.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|+
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 356788999999999999999999999999999999999999999999999999999999999 556899999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----------------------------
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------------------------- 131 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------- 131 (341)
+||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.++..
T Consensus 727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 999999999999999999999999999999999999999999999865421
Q ss_pred ----------------------------------cC-eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCce
Q psy17863 132 ----------------------------------HP-IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176 (341)
Q Consensus 132 ----------------------------------~~-~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 176 (341)
.. ......+.+..+++++.+|.+++||+.+......+.. +...
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~ 884 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG--HLSW 884 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC--CSSC
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC--Cccc
Confidence 00 1112234455788889999999999988776665543 4567
Q ss_pred EEEEEECCCCceEEEeC-CCceEEEEcccc--------------------------------------------cCCCCe
Q psy17863 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEED--------------------------------------------YGQEPI 211 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--------------------------------------------~~~~~i 211 (341)
+.+++|+|+++.+++++ ++.+++|+.... .....+
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 99999999999888876 589999997531 034578
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.+++++|+++++++|+.+|.|++||+.+++....+.+|...+..+ +|+|+++++++++.||.|++||+.+++... +.
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~ 1041 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI--QFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQ 1041 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE--EECSSSSCEEEECSSSBEEEEETTTTEEEC-CB
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE--EECCCCCEEEEEcCCCEEEEEECCCCceEE-Ee
Confidence 999999999999999999999999999999999999999999888 899999999999999999999998887653 33
Q ss_pred eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccCCc
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQA 331 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~~ 331 (341)
.|...|.+++|+|++.+++.+.|+.|++|++.++....
T Consensus 1042 --~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 1079 (1249)
T 3sfz_A 1042 --AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER 1079 (1249)
T ss_dssp --CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCE
T ss_pred --cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeE
Confidence 68899999999998765444449999999998765443
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-44 Score=299.77 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=241.6
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
.+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 455699999999999999999999999999999998887 888899999999999999999999999999999999998
Q ss_pred CCceeee--ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 86 TGQPVRR--WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 86 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+++.... +..|...|.+++|+|++++|++++.|+.|++||++.......
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~----------------------------- 133 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV----------------------------- 133 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee-----------------------------
Confidence 8875443 366899999999999999999999999999999987541100
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcc------------------cc-------cCCCCeEEEEEc
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE------------------ED-------YGQEPIVDACFT 217 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~------------------~~-------~~~~~i~~~~~~ 217 (341)
.......+...+.+++|+|+++++++++ ++.+++||+. .. .+...+.+++|+
T Consensus 134 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 134 --CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp --EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred --eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 0011112345699999999999888876 6899999963 11 267789999999
Q ss_pred cCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC--CCc--e------
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD--SSQ--I------ 287 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~------ 287 (341)
|++++|++++.|+.|++||+++++.+..+..|...+..+ +|+|+++++++| .|+.|++|++.+ ++. +
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV--TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE--EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE--EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 999999999999999999999999999999999888887 888999888888 899999999988 421 0
Q ss_pred ------------------------------EEEEeeeeccceEEEEEc-CCC---cEEEEeC-CCcEEEEEccccc
Q psy17863 288 ------------------------------STLIHSVGKAVVNSLCSH-PTR---KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 288 ------------------------------~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..+ ..+|..+|++++|+ ++| ++|++++ ||.|++|++.+..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCC-SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccc-cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 12788999999966 666 9999999 9999999998754
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-44 Score=327.11 Aligned_cols=316 Identities=10% Similarity=0.068 Sum_probs=242.8
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-----------eEecCcccceeEEEEecC-CCEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-----------KTYGGHAHEVNDATAACD-SSQIA 71 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~ 71 (341)
++++++. |.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|+ +..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 4566665 7789999999999999999999999999999887753 234679999999999996 57899
Q ss_pred EecCCCcEEEEECCCCceeeeeccc------------------CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-
Q psy17863 72 SGASDKSVILWEVTTGQPVRRWREH------------------ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH- 132 (341)
Q Consensus 72 ~~~~dg~i~iw~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 132 (341)
+|+.||.| +||+++++.+..+..| ...|.+++|+|++++|++++.||.|++||+++++..
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999888877655 577999999999999999999999999998654310
Q ss_pred -------------------------CeEEeec----CCC--ceEEEe---------------------------------
Q psy17863 133 -------------------------PIQCCLD----SKD--SQIFCG--------------------------------- 148 (341)
Q Consensus 133 -------------------------~~~~~~~----~~~--~~~~~~--------------------------------- 148 (341)
.+..+.+ .++ ..+++|
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 1222222 111 233333
Q ss_pred -------------------------------------------eccCeEEEEEccCCcceee-------eEe--------
Q psy17863 149 -------------------------------------------SSDGKIYKWQLVDSSQIST-------LIH-------- 170 (341)
Q Consensus 149 -------------------------------------------~~~g~i~~~d~~~~~~~~~-------~~~-------- 170 (341)
+.||.+++||+.++..... +..
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 2334444454433211110 000
Q ss_pred ------------------------eecCceEEEEEECCCCceEEEeC-CCceEEEEcccc------------------cC
Q psy17863 171 ------------------------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------------------YG 207 (341)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------------------~~ 207 (341)
..+...+.+++++|+++.+++++ |++|++||+... .|
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 00011223345678898888876 589999998653 34
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEeccccc---------------------------------------------e
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATGE---------------------------------------------L 242 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------------------~ 242 (341)
...|.+++|+|++++|++|+.||+|++||+.+++ +
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 5689999999999999999999999999998662 3
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE---e-eeeccceEEEEEc-----CCC---cE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI---H-SVGKAVVNSLCSH-----PTR---KH 310 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~-~~~~~~v~~~~~~-----~~~---~~ 310 (341)
+..+.+|...|+.+ +|+|+| +||+|+.|++|++||++++..+.... . .+|...|++++|+ ||| ++
T Consensus 568 ~~~l~~h~~~V~sv--afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 568 STAVHANKGKTSAI--NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEECCCSCSEEEE--EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eEEEEcCCCcEEEE--EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 67788999999988 899999 99999999999999987776654322 1 1678889999999 885 89
Q ss_pred EEEeC-CCcEEEEEc
Q psy17863 311 IMSAC-GNNVKLWTA 324 (341)
Q Consensus 311 l~~~~-d~~i~vw~~ 324 (341)
|++++ |++|++|++
T Consensus 645 l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 645 MVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEecCCcEEEEEE
Confidence 99999 999999999
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.9e-45 Score=307.92 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=222.7
Q ss_pred eeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEec-CCCEEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAAC-DSSQIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 79 (341)
+......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++++|+| ++++|++++.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 45567788999999999999 5679999999999999999876544 34568999999999998 68899999999999
Q ss_pred EEEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 80 ILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
++||++++....... .+...+.+++|+|++++|++|+.||.|++||++....
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-------------------------- 243 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-------------------------- 243 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--------------------------
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--------------------------
Confidence 999998765433333 2345678999999999999999999999999864321
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCc-eEEEe-CCCceEEEEccccc----------CCCCeEEEEEccCCCEEEE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSA-CGNNVKLWTAEEDY----------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~ 225 (341)
..+ ..+...|.+++|+|++. +++++ .++.|++||+.... |..+|.+++|+|+|++|++
T Consensus 244 --------~~~--~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 244 --------WNL--RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp --------CCS--BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred --------EEE--ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE
Confidence 011 11344577888888765 34443 35778888875422 6788999999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEec------------CCCcEEEEeeeCCCceEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGS------------SDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~ 289 (341)
++.|+.|++||+.+++....+..|... ...+...++|++.+++++. .++.|++||..+++.+..
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 999999999999998877777655432 2223335666666665543 346799999999998887
Q ss_pred EEeeeeccceEEE-EEcCCCcEEEEeCCCcEEEEEcccccC
Q psy17863 290 LIHSVGKAVVNSL-CSHPTRKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 290 ~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
+.. +|...|.++ +|+|+|++|++|+|+.|+||+++++..
T Consensus 394 l~~-~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 394 LYD-PESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp ECC-SSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred EeC-CCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 753 577788887 699999999998888999999987653
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-43 Score=312.22 Aligned_cols=319 Identities=14% Similarity=0.174 Sum_probs=244.5
Q ss_pred eeeeEEeeeCCc-EEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc--------ceeeEecCcccceeEEEEec-------
Q psy17863 4 TCVQTIDCKQGA-IRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAAC------- 65 (341)
Q Consensus 4 ~~~~~l~~h~~~-v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~------- 65 (341)
+..+.+.+|.+. |++++|+| ++++|++++.||.|++||+.++ +....+..|...|.+++|+|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 678899999999 99999999 9999999999999999999744 45555555555555555554
Q ss_pred -------------------------------------CCC-EEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEE
Q psy17863 66 -------------------------------------DSS-QIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVK 104 (341)
Q Consensus 66 -------------------------------------~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~ 104 (341)
+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 444 677778889999999999999999999999 999999
Q ss_pred EcCC-CcEEEEecCCCeEEEEEecCCC------------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee
Q psy17863 105 FNED-SSVVISGSQDNTVMMWDVKSRS------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171 (341)
Q Consensus 105 ~~~~-~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 171 (341)
|+|+ +++|++++.||.|++||+++++ ...+..+.+..+..+++++.|+.+++||+++.+....+...
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9999 9999999999999999987643 12333333346678999999999999999988877766543
Q ss_pred e--cCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCC-------------------------------
Q psy17863 172 V--GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEP------------------------------- 210 (341)
Q Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~------------------------------- 210 (341)
. ....+..+.+. ++..+++++ ++.+++|++.... |..+
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 1 12445566664 444444443 4677777755311 2222
Q ss_pred --eEEEEE----------------------------------ccC-----------------------------------
Q psy17863 211 --IVDACF----------------------------------TRD----------------------------------- 219 (341)
Q Consensus 211 --i~~~~~----------------------------------~~~----------------------------------- 219 (341)
|.+++| +|+
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence 222222 111
Q ss_pred ---CCEEEEeec-CCeEEEEecccccee-eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 220 ---CQCILTCST-DECLRLFDKATGELL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 220 ---~~~l~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
++++++++. |+.|++||+.+++.. ..+.+|...+..+ +++|++++|++++.||.|++||+.+++.+..+. .
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~ 528 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETYIAAGDVMGKILLYDLQSREVKTSRW--A 528 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEECCS--C
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE--EECCCCCEEEEcCCCCeEEEeeCCCCcceeEee--c
Confidence 445555555 666666666655544 5667788888877 899999999999999999999999999888776 5
Q ss_pred -eccceEEEEEcC----------CCcEEEEeC-CCcEEEEEcccc
Q psy17863 295 -GKAVVNSLCSHP----------TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 295 -~~~~v~~~~~~~----------~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
|...|++++|+| ++++|++++ |+.|++|++.+.
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 899999999999 999999999 999999999876
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-43 Score=301.93 Aligned_cols=306 Identities=18% Similarity=0.303 Sum_probs=254.6
Q ss_pred eeeEEeeeCCcE-EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAI-RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...++.+|.+.| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ ++++|+.||+|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 567899999885 66666 56799999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcC---------------------e------
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHP---------------------I------ 134 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------~------ 134 (341)
+++++.+..+.+|...|.+++|+ ++++++++++.|+.|++||+++..... .
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 578999999999999999998754211 0
Q ss_pred ---EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----
Q psy17863 135 ---QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---- 206 (341)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---- 206 (341)
.......+..+++++.||.|++||+++.+.+..+.. +...+.+++++|+++.+++++ ++.+++||+....
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 111233456899999999999999998887776644 456799999999999888877 5899999997643
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
|...+.+++++ ++++++++.||.|++||+.+++...... +...+..+ +++++++++++|+ ||.|++||+.+
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT--TFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE--EEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE--EEEeCCCEEEEec-CCeEEEEECCC
Confidence 78899999997 5789999999999999999887665554 44445555 7889999999998 89999999999
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
++.+..... .|...|.+++|+ +..++++++ |+.+.+|-
T Consensus 422 g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 998876322 678999999997 345555555 77665554
No 43
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-43 Score=286.97 Aligned_cols=248 Identities=19% Similarity=0.254 Sum_probs=215.9
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
+..+++.+|...|.+++|+|++++|++++.||+|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+++++ .+..+. .+...|.+++++|+++++++++ ++.+++||+..
T Consensus 84 ~~~~~---------------------------------~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 84 YNTGE---------------------------------KVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp TTTCC---------------------------------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred CCCCc---------------------------------EEEEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence 87654 111221 2456699999999999888876 58999999876
Q ss_pred c--------cCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 205 D--------YGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 205 ~--------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
. .|...|.+++|+| ++..|++|+.|+.|++||+.++.....+. +|...+..+.+...+++++|++|+.|+
T Consensus 129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 4 2788999999999 67899999999999999998877666554 455677777555566889999999999
Q ss_pred cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 275 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|++||+++++++..+. +|...|.+++|+|++++|++++ |+.|++||+.+....
T Consensus 209 ~i~iWd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeCCCCccceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 99999999999999998 8999999999999999999999 999999999876543
No 44
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-44 Score=299.81 Aligned_cols=241 Identities=24% Similarity=0.443 Sum_probs=213.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
++.+++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCC--------------
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSK-------------- 141 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~-------------- 141 (341)
+++++++..+.+|...|.++.++|++.+|++++.|+.|++||+.++. ...+.++.+.+
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 99999999999999999999999999999999999999999998754 22334443333
Q ss_pred -------CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEE
Q psy17863 142 -------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDA 214 (341)
Q Consensus 142 -------~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 214 (341)
+..+++|+.|+.|++||++++..+..+.. |...|.++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~------------------------------------h~~~v~~v 344 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG------------------------------------HDNWVRGV 344 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------------CSSCEEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC------------------------------------CCCcEEEE
Confidence 44788888888888888887665544432 35678899
Q ss_pred EEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
+|+|++++|++++.|+.|++||+.+++++..+.+|...|..+ +|+|++++|++|+.||+|++|+++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE--EECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999888 899999999999999999999863
No 45
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-43 Score=286.41 Aligned_cols=240 Identities=15% Similarity=0.262 Sum_probs=217.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+...+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
++++....+..|...|.+++|+|++++|++++.||.|++||+++++ .
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---------------------------------~ 198 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---------------------------------L 198 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------------E
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------------E
Confidence 9999999999999999999999999999999999999999987643 1
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
+..+ ..+...+.+++|+|+++++++++. +.+++||+.... |...|.+++|+|++++|++++.|+.|++||
T Consensus 199 ~~~~--~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 199 LHTL--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEE--CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEE--cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 1111 123456889999999999988874 889999987643 778899999999999999999999999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
+.+++++..+.+|...+..+ +|+|++++|++++.||.|++||.
T Consensus 277 ~~~~~~~~~~~~h~~~v~~v--~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 277 VGTRTCVHTFFDHQDQVWGV--KYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCEEEEEEcCCCCcEEEE--EECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999888 89999999999999999999996
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-44 Score=303.06 Aligned_cols=298 Identities=13% Similarity=0.217 Sum_probs=233.3
Q ss_pred ceeeeEE-eeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCC---cc---eeeEecCcccceeEEEEecCCCEEEEec
Q psy17863 3 YTCVQTI-DCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYR---NL---LLKTYGGHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 3 ~~~~~~l-~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.+++.++ ++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++++|++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 4567788 88999999999999 999999999999999999876 33 23333 4899999999999999999999
Q ss_pred CCCcEEEEECC---CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 75 SDKSVILWEVT---TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 75 ~dg~i~iw~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
.||.|++||++ +++....+..| .+..+.|+|++ ..+..+.++ ....+.+..+++++.|
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------KNEYAVRMR-----------AFVNEEKSLLVALTNL 191 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------SCCCEEEEE-----------EEECSSCEEEEEEETT
T ss_pred CCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------cccCceEEE-----------EEEcCCCCEEEEEeCC
Confidence 99999999995 66666666555 66667766532 111111111 1122345567777777
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEc----c
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFT----R 218 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~----~ 218 (341)
+.|++||+++.+.+..+....+...+.+++++|+++++++++ ++.+++||++... +..+|.+++++ |
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 777777777777777776544567899999999999998876 5889999987532 56689999555 5
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCc--------------------------ccceeEEEEEeCCCCCEEEEecC
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGH--------------------------KSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
++.+|++++.|+.|++||+++++.+..+.+| ...+..+ +++ ++++|++|+.
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l--~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI--SVS-NDKILLTDEA 348 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE--EEE-TTEEEEEEGG
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE--EEC-CceEEEecCC
Confidence 6889999999999999999998887777654 3445555 666 6789999999
Q ss_pred CCcEEEEeeeCCCceEEEEee-----------------------------------eeccceEEEEEcCC--CcEEEEeC
Q psy17863 273 DGKIYKWQLVDSSQISTLIHS-----------------------------------VGKAVVNSLCSHPT--RKHIMSAC 315 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~~~~--~~~l~~~~ 315 (341)
||.|++||+.+++....+... .|...|++++|+++ +.+|++++
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 999999999999887776621 17899999999998 88999999
Q ss_pred -CCcEEEEE
Q psy17863 316 -GNNVKLWT 323 (341)
Q Consensus 316 -d~~i~vw~ 323 (341)
||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 99999995
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-44 Score=306.67 Aligned_cols=311 Identities=13% Similarity=0.083 Sum_probs=227.9
Q ss_pred EEeeeCCcEEEEEEccCC---------CEEEE-------------------EeCCCeEEEEcCCCccee----eEecCcc
Q psy17863 8 TIDCKQGAIRAVRFNVDG---------SYCLT-------------------CGSDKKIKLWNPYRNLLL----KTYGGHA 55 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~---------~~l~t-------------------~~~dg~i~iw~~~~~~~~----~~~~~~~ 55 (341)
++. +.+.|.+++|+|++ ++||+ ++.|++|+|||+.+++.. ..+..|.
T Consensus 129 ~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~ 207 (524)
T 2j04_B 129 IYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF 207 (524)
T ss_dssp EEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred EEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence 444 67889999999876 56666 446889999998776642 3456678
Q ss_pred cceeEEEEecC------CCEEEEecCCCcEEEEECCCCce-----------eeeecccCccEEEEEEcCCCcEEEEecCC
Q psy17863 56 HEVNDATAACD------SSQIASGASDKSVILWEVTTGQP-----------VRRWREHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 56 ~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
+.|.+++|+|+ +.+|++++.||+|++||+.+++. ...+.+|...|++++|++++ .|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence 89999999996 57999999999999999987642 23677899999999999864 89999999
Q ss_pred CeEEEEEecCCC---------CcCeEEe--ecCCC--ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC
Q psy17863 119 NTVMMWDVKSRS---------HHPIQCC--LDSKD--SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185 (341)
Q Consensus 119 ~~i~iwd~~~~~---------~~~~~~~--~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (341)
|+|++||++++. ...+..+ .++++ ..+++++.|++|++||+++.+....+..+.....+.+++|+|+
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence 999999998653 1234444 34554 5889999999999999998887766655433334788999999
Q ss_pred CceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc-----cc
Q psy17863 186 RKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK-----SG 252 (341)
Q Consensus 186 ~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~ 252 (341)
++.++++++ +.+++||++... |...|.+++|+|++++|++|+.|++|++||+... .+..+..+. ..
T Consensus 367 ~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~ 445 (524)
T 2j04_B 367 IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLR 445 (524)
T ss_dssp TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCE
T ss_pred cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeE
Confidence 988887764 789999987643 7889999999999999999999999999998643 332222111 12
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeeeeccceEEEEEcCCCc---EEEEeC-CCcEEEEEcccc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSLCSHPTRK---HIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-d~~i~vw~~~~~ 327 (341)
+. .++++|+++.+. ...+ +.+|+.. ++..+..+. +|...|.+++|+|+++ .+|+|+ ||.|+||++..+
T Consensus 446 v~--~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 446 LW--KWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EE--ECBCCSSSCEEE-ECCC--CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EE--EeccCCCCCeEE-ccCC--ceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 33 448999998553 2222 3344432 566777777 8999999999999964 999999 999999998765
Q ss_pred c
Q psy17863 328 Y 328 (341)
Q Consensus 328 ~ 328 (341)
.
T Consensus 519 ~ 519 (524)
T 2j04_B 519 H 519 (524)
T ss_dssp -
T ss_pred c
Confidence 4
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.4e-44 Score=290.11 Aligned_cols=269 Identities=18% Similarity=0.257 Sum_probs=203.5
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEec--CCCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 81 (341)
...+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+| ++++|++++.|++|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 34567999999999999999999999999999999998764 4678899999999999986 4899999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+++++ ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... |
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------------------------~ 140 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------------------------W 140 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------------------------E
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------------------------c
Confidence 9998874 56677889999999999997 78999999999999999876421 0
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.... . ...+...+.+++|+|+...- .+ .+.. .. ...+++++|++++.|+.|++||+
T Consensus 141 ~~~~-----~--~~~h~~~v~~~~~~~~~~~~------~~--~~~~----~~-----~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 141 EVKK-----I--NNAHTIGCNAVSWAPAVVPG------SL--IDHP----SG-----QKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EECC-----B--TTSSSSCBCCCEECCCCCC--------------C----CS-----CCCCCCCBEECCBTTSBCCEEEE
T ss_pred ceee-----e--eccccCCcceEEEccccCCc------cc--cccc----cc-----cCccccceEEEecCCCeEEEEEe
Confidence 0000 0 01122345556666653200 00 0000 00 01123578999999999999998
Q ss_pred ccc---ceeeeecCcccceeEEEEEeCCCC----CEEEEecCCCcEEEEeeeCCC----ceEEEEeeeeccceEEEEEcC
Q psy17863 238 ATG---ELLEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGKIYKWQLVDSS----QISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 238 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~ 306 (341)
+.. +++..+.+|...|..+ +|+|++ ++|++++.||+|++|++.+.. ....+. .|...|.+++|+|
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v--~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp 272 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDV--AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSI 272 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEE--ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECT
T ss_pred CCCCccceeeecccCCCceEEE--EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcC
Confidence 754 4677889999999888 888986 789999999999999987632 223344 6789999999999
Q ss_pred CCcEEEEeC-CCcEEEEEcccc
Q psy17863 307 TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
++++||+++ |+.|++|+....
T Consensus 273 ~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 273 TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp TTCCEEEEESSSCEEEEEECTT
T ss_pred CCCEEEEEcCCCeEEEEEECCC
Confidence 999999999 999999998643
No 49
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-43 Score=293.65 Aligned_cols=277 Identities=12% Similarity=0.102 Sum_probs=217.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCC-------CeEEEEcCCCcce----------eeEecCcccceeEEEEecCCCEEEEe--
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSD-------KKIKLWNPYRNLL----------LKTYGGHAHEVNDATAACDSSQIASG-- 73 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~d-------g~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~-- 73 (341)
.-||.+++|+||+++|++|+.+ +.|++|++..... ...+..|...+.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999998754 3599999765432 12456788888888765 5566654
Q ss_pred ---------cCCCcEEEEECCCCceeee---------ecccCccEEEEEEcCCCcEEEEe--cCCCeEEEEEecCCCCcC
Q psy17863 74 ---------ASDKSVILWEVTTGQPVRR---------WREHASKVTCVKFNEDSSVVISG--SQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 74 ---------~~dg~i~iw~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~ 133 (341)
+.|+.+++|++........ ...+...+.+++|+|||++++++ +.|++|++||+++.+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--- 168 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--- 168 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE---
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc---
Confidence 4578899999876532211 12344568999999999987654 457777777766432
Q ss_pred eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------
Q psy17863 134 IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------- 206 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------- 206 (341)
....+. +...|.+++|+|+++++++++++.+.+|+.....
T Consensus 169 ------------------------------~~~~~~---~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 169 ------------------------------EKFEIE---TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp ------------------------------EEEEEE---CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred ------------------------------EEEEeC---CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeec
Confidence 222322 3345899999999999999999888888876533
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCC----eEEEEeccccce----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDE----CLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
+...+.+++|+|+++++++++.|+ .+++|++..... ...+.+|...|.++ +|+|+|++||+|+.|++|
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~Spdg~~lasgs~D~~V 293 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM--DVDMKGELAVLASNDNSI 293 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE--EECTTSCEEEEEETTSCE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE--EECCCCCceEEEcCCCEE
Confidence 567899999999999999999887 688899876543 45677888888887 899999999999999999
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|||+++++++..+.. +|..+|++++|+|||++||+++ |++|+||++++.+..
T Consensus 294 ~iwd~~~~~~~~~~~~-gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 294 ALVKLKDLSMSKIFKQ-AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp EEEETTTTEEEEEETT-SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred EEEECCCCcEEEEecC-cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 9999999998887532 7999999999999999999999 999999999866543
No 50
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=291.36 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=232.1
Q ss_pred CceeeeEEeeeCCcEEEEEEccC---CCEEEEEeCCCeEEEEcCCC-ccee-eEecCcccceeEEEEecCCCEEEEecCC
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVD---GSYCLTCGSDKKIKLWNPYR-NLLL-KTYGGHAHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (341)
|++.++.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 56778889999999999999999 69999999999999999987 5444 7788899999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEE--cCCCcEEEEecCCCeEEEEEecCCCCcCe------EEeecCCCceEEEe
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKF--NEDSSVVISGSQDNTVMMWDVKSRSHHPI------QCCLDSKDSQIFCG 148 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~ 148 (341)
|.|++||+++++.+. +..|...|.+++| +|++++|++++.||.|++||+++++.... ..........++++
T Consensus 108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence 999999999988766 5569999999999 89999999999999999999987652111 11112223467778
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE----EE
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC----IL 224 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----l~ 224 (341)
+.++.+.+|+++............ ......++.+.++... ++
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESP----------------------------------LKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCS----------------------------------CSSCEEEEEEEECTTSCEEEEE
T ss_pred eCCCcEEEEEeccccchhhhcccc----------------------------------ccCCCceEEEcccCCCCCCeEE
Confidence 888888888887654332221111 1233445555554443 99
Q ss_pred EeecCCeEEEEecccc---ceeeeecCccc------------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 225 TCSTDECLRLFDKATG---ELLEEYKGHKS------------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+++.|+.|++||++.. +.+..+.+|.. .+..+ +++|++++|++++.||.|++||+.+++++..
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI--AFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE--EEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 9999999999999877 56777888776 57776 8999999999999999999999999999988
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+. .|..+|++++|+|++++|++++ |+..+.|++-.
T Consensus 311 ~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 311 SE--QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CC--CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ec--CCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 88 8899999999999999999999 87666555443
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.7e-42 Score=283.57 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=219.4
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.+...++.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
++.+..... ..... ...+...+.++.+++++.++.++.++.+++||+..
T Consensus 125 ~~~~~~~~~-----------------------------~~~~~--~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 125 NLKTREGNV-----------------------------RVSRE--LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp ETTTCSBSC-----------------------------EEEEE--EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ECccCCCcc-----------------------------eeEEE--ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 987643110 00111 12244568899999999877777789999999876
Q ss_pred cc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 205 DY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.. |...|.+++|+|+++++++|+.|+.|++||+++++.+..+.+|...+..+ +|+|++++|++|+.||.|+
T Consensus 174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v--~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI--CFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE--EEcCCCCEEEEEcCCCcEE
Confidence 43 78899999999999999999999999999999999999999999999888 8999999999999999999
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+||+++++.+..+....+...|++++|+|++++|++++ |+.|++||+.+...
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE
Confidence 99999988777765333445799999999999999999 99999999876543
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-44 Score=300.26 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=224.1
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
..++.|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567889999999999999999999999999999888 788889999999999999999999999999999999999
Q ss_pred CCCc---eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 85 TTGQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 85 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||++..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------- 136 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW---------------------------- 136 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC----------------------------
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce----------------------------
Confidence 9887 667778899999999999999999999999999999987654100
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc------------------------cCCCCeEEEEE
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------------------------YGQEPIVDACF 216 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------------------------~~~~~i~~~~~ 216 (341)
....+. ..+...+.+++|+|+++++++++ ++.+++|++... .|...|.+++|
T Consensus 137 --~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 213 (377)
T 3dwl_C 137 --VSKHLK-RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF 213 (377)
T ss_dssp --CCEEEC-SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEE
T ss_pred --eeeEee-cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEE
Confidence 011111 11456799999999999888876 589999998421 36778999999
Q ss_pred ccCCCEEEEeecCCeEEEEeccccce----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc------
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ------ 286 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 286 (341)
+|++++|++++.|+.|++||+.+++. +..+.+|...+..+ +|+|++++|++|+.++.+ +|+......
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 290 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL--LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDL 290 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE--EEEETTEEEEEESSSSEE-EECCCC---CCSBCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE--EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeee
Confidence 99999999999999999999999887 88899999999888 889999999999876666 666542110
Q ss_pred ---------------------e---------EEEE--------------eeeeccceEEEEEcCCCc----EEEEeC-CC
Q psy17863 287 ---------------------I---------STLI--------------HSVGKAVVNSLCSHPTRK----HIMSAC-GN 317 (341)
Q Consensus 287 ---------------------~---------~~~~--------------~~~~~~~v~~~~~~~~~~----~l~~~~-d~ 317 (341)
. ..+. ...|...|+++++.+... .|++++ ||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg 370 (377)
T 3dwl_C 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370 (377)
T ss_dssp CSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCC
Confidence 0 0010 012889999999766542 699999 99
Q ss_pred cEEEEEc
Q psy17863 318 NVKLWTA 324 (341)
Q Consensus 318 ~i~vw~~ 324 (341)
.|++|++
T Consensus 371 ~i~iWdl 377 (377)
T 3dwl_C 371 RVVLWTL 377 (377)
T ss_dssp EEEEECC
T ss_pred cEEEecC
Confidence 9999985
No 53
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=282.94 Aligned_cols=237 Identities=16% Similarity=0.237 Sum_probs=195.4
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE----ecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT----YGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
..|...|++++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|...|++++|+|++++|++|+.|++|++||++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3467889999999986 688999999999999998876544 34899999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCC----------cCeEEeecCC--CceEEEeeccC
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSK--DSQIFCGSSDG 152 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~--~~~~~~~~~~g 152 (341)
+++++..+.+|...|.+++|++++ .+|++++.|+.|++||+++++. ..+..+.+.+ ...+++|+.||
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 999999999999999999999987 4789999999999999987652 1223333332 34677888888
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEeecCCe
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 231 (341)
.|++||+++++.+..+.. |...|++++|+|++ ++|++|+.|++
T Consensus 238 ~v~~wd~~~~~~~~~~~~------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAV------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp EEEEEESCC--CCEEEEC------------------------------------CSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred cEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 899998888776655532 35678888888887 57899999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCCc
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 286 (341)
|++||+++++.+ .+.+|...|..+ +|+|+++ +|++++.||+|++|++.+...
T Consensus 282 i~vwd~~~~~~~-~~~~H~~~V~~v--~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 282 LAVLDSSLSELF-RSQAHRDFVRDA--TWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEECTTCCEEE-EECCCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEECCCCcEE-EEcCCCCCEEEE--EEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999999988764 578999999888 8999886 577899999999999876543
No 54
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-41 Score=285.86 Aligned_cols=281 Identities=17% Similarity=0.257 Sum_probs=230.6
Q ss_pred eeCCc--EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 11 CKQGA--IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 11 ~h~~~--v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+|... +.+++|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 56554 44466654 5688888999999999999988877765 7899999999999999999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
+.+..+..|...|.+++|+ ++.+++++.||.|++||++.... ....
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------------------------------~~~~ 212 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH--------------------------------QIGT 212 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------------------------------EEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------------------------------eeeE
Confidence 9999999999999999994 56999999999999999874321 1111
Q ss_pred eEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCC-EEEEee--cCCeEEEEe
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQ-CILTCS--TDECLRLFD 236 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d 236 (341)
+ ..+...+.+++|+|+++++++++ ++.+++||+.... +...+.+++|+|++. ++++++ .|+.|++||
T Consensus 213 ~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 213 L--QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp E--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred E--cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 1 12456799999999999888877 5899999987643 778999999999765 455544 799999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEE--ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFC--GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
+.+++.+..+. +...+..+ +|+|+++++++ |+.||.|++||+.+++.........|...|.+++|+|++++|+++
T Consensus 291 ~~~~~~~~~~~-~~~~v~~~--~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 291 AATGARVNTVD-AGSQVTSL--IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp TTTCCEEEEEE-CSSCEEEE--EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCEEEEEe-CCCcEEEE--EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 99999988886 45567766 89999999998 558999999999997766655444899999999999999999999
Q ss_pred C-CCcEEEEEcccccCCcc
Q psy17863 315 C-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 315 ~-d~~i~vw~~~~~~~~~~ 332 (341)
+ ||.|++|++.++.....
T Consensus 368 ~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTSEEEEEECCC------
T ss_pred eCCCcEEEEECCCCccccc
Confidence 9 99999999988765443
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-42 Score=286.59 Aligned_cols=268 Identities=19% Similarity=0.235 Sum_probs=213.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEecC--CCEEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 79 (341)
++++.+++|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4678899999999999999999999999999999999987 66778889999999999999977 8999999999999
Q ss_pred EEEECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 80 ILWEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 80 ~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.......
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--------------------- 140 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--------------------- 140 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---------------------
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---------------------
Confidence 999999987 67778889999999999998 89999999999999999886531111
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
.....+...+.+++|+|...... ......+++.++++++.|+.|++|
T Consensus 141 ------------~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~dg~i~i~ 187 (379)
T 3jrp_A 141 ------------IIIDAHAIGVNSASWAPATIEED---------------------GEHNGTKESRKFVTGGADNLVKIW 187 (379)
T ss_dssp ------------EEEECCTTCEEEEEECCCC-------------------------------CTTCEEEEEETTSCEEEE
T ss_pred ------------EEecCCCCceEEEEEcCcccccc---------------------ccccCCCCCCEEEEEeCCCeEEEE
Confidence 11111223344444444321110 001113378999999999999999
Q ss_pred eccccc----eeeeecCcccceeEEEEEeCCC---CCEEEEecCCCcEEEEeeeCCCce---EEEEeeeeccceEEEEEc
Q psy17863 236 DKATGE----LLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGKIYKWQLVDSSQI---STLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 236 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~ 305 (341)
|+++++ ....+.+|...+..+ +|+|+ +++|++++.||.|++||+.+++.. ..+....|...|.+++|+
T Consensus 188 d~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 188 KYNSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp EEETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC
T ss_pred EecCCCcceeeEEEEecccCcEeEE--EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc
Confidence 998764 456778899999888 89999 899999999999999999887532 222222478899999999
Q ss_pred CCCcEEEEeC-CCcEEEEEcccc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
|++++|++++ ||.|++|++...
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999 999999999853
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-41 Score=280.38 Aligned_cols=278 Identities=13% Similarity=0.073 Sum_probs=231.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc---eeeEecCcccceeEEEEecCCC-EEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSS-QIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 79 (341)
+.+....+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3445567899999999999999999999999999999998776 3455567999999999999999 99999999999
Q ss_pred EEEEC-CCCceeeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC---------CC-------CcCeEEeecC
Q psy17863 80 ILWEV-TTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS---------RS-------HHPIQCCLDS 140 (341)
Q Consensus 80 ~iw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~-------~~~~~~~~~~ 140 (341)
++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++ .+ ...+..+...
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 99999 77654 67778 999999999999 99999999999999999876 33 1234444455
Q ss_pred CCceEEEeeccCeEEEEEccC-CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR- 218 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~- 218 (341)
++. +++++.++.|++||+++ .......... .+...+.+++|+|
T Consensus 160 ~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 160 SSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES----------------------------------GLKYQIRDVALLPK 204 (342)
T ss_dssp SSE-EEEEESTTEEEEEESSCCTTCCCEEEEC----------------------------------SCSSCEEEEEECSG
T ss_pred CCc-EEEEeCCCeEEEEECCccccccceeeec----------------------------------CCCCceeEEEECCC
Confidence 554 88888888888888876 4332211111 1356788899999
Q ss_pred CCCEEEEeecCCeEEEEecccc------ceeeeecCccc---------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 219 DCQCILTCSTDECLRLFDKATG------ELLEEYKGHKS---------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++++++++.||.+++|+++.. +....+..|.. .+..+ +|+|++++|++++.||.|++||+.+
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE--EECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE--EEcCCCCEEEEecCCceEEEEcCcc
Confidence 9999999999999999999877 77788888865 77777 8999999999999999999999999
Q ss_pred CCceEEEEeeee-ccceEEEEEcCCCcEEEEeC-CCc-EEEEEc
Q psy17863 284 SSQISTLIHSVG-KAVVNSLCSHPTRKHIMSAC-GNN-VKLWTA 324 (341)
Q Consensus 284 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-d~~-i~vw~~ 324 (341)
++.+..+. .| ..+|.+++ |++++|++++ ||. .+.|..
T Consensus 283 ~~~~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 283 RKKIKNFA--KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TEEEEECC--CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred HhHhhhhh--cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99988887 77 89999999 9999999999 998 555553
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-41 Score=286.05 Aligned_cols=273 Identities=16% Similarity=0.289 Sum_probs=220.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.++.|+||++ ++||+|. |++|+|||..+++....+. +|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999976 4777765 9999999999998877664 6778899999999999999999999999999999999999
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCe-EEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+.+|...+.++.++ +..|++++.|+.+++||...... ..+ .....+.+..+++++.|+.+++|+...+
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998885 67999999999999999876432 122 2334455668888899999999998776
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEE--EeecCCeEEEEeccc
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CIL--TCSTDECLRLFDKAT 239 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~--~~~~d~~i~i~d~~~ 239 (341)
+......... ..+...|.+++|+|++. .++ .|+.|+.|++||+.+
T Consensus 263 ~~~~~~~~~~--------------------------------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 263 EGGWVPLQTF--------------------------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SSCSCCSEEE--------------------------------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred cccceeeeee--------------------------------cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 5332211100 11345566677777543 343 356899999999999
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 316 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 316 (341)
++.+..+..+.. +..+ .++++++.+++++ .|+.|+|||+.+++++..+. +|.+.|++++|+|||++|++++ |
T Consensus 311 ~~~~~~~~~~~~-v~~~--~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 311 GACLSAVDAHSQ-VCSI--LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp TEEEEEEECSSC-EEEE--EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred cccceeeccccc-eeee--eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecC
Confidence 999988886654 4444 7889998887654 79999999999999999998 8999999999999999999999 9
Q ss_pred CcEEEEEccccc
Q psy17863 317 NNVKLWTAEEDY 328 (341)
Q Consensus 317 ~~i~vw~~~~~~ 328 (341)
++|+||++.+..
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999997643
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.7e-42 Score=281.88 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=222.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEec--CCCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 78 (341)
..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|++++|+| ++++|++++.||.
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 34567899999999999999999999999999999999876 46677789999999999999 6999999999999
Q ss_pred EEEEECCCC---------ceeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEE
Q psy17863 79 VILWEVTTG---------QPVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFC 147 (341)
Q Consensus 79 i~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (341)
|++||++++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++.+.......
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------- 152 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL---------- 152 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE----------
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc----------
Confidence 999999887 557778889999999999998 99999999999999999987652111000
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC---CCEEE
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD---CQCIL 224 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---~~~l~ 224 (341)
. ..+..+.+. ...+...+.+++|+|+ +.+++
T Consensus 153 -----------------------~---~~~~~~~~~--------------------~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 153 -----------------------T---SEMKVLSIP--------------------PANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp -----------------------E---EEEESCSCC--------------------CSSCSCCCEEEEECCCSSSCCEEE
T ss_pred -----------------------c---ccccccccc--------------------cCCcccceeEEEeccCCCCCcEEE
Confidence 0 000001111 1124567888999997 89999
Q ss_pred EeecCCeEEEEeccccce--eeeecCcccceeEEEEEeCCCC----CEEEEecCCCcEEEEeeeCC--------------
Q psy17863 225 TCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGKIYKWQLVDS-------------- 284 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~-------------- 284 (341)
+++.++.+.+|+...++. +..+.+|...+..+ +|+|++ ++|++|+.||.|++||+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 264 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI--SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE--EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EecCCCcEEEEccCCCceeeeeecCCCCcceeEE--EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee
Confidence 999999998888777664 77788999999888 899998 89999999999999999875
Q ss_pred --------------------------------CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 285 --------------------------------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 285 --------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
+.+..+. .|...|++++|+|++++|++++ ||.|++|++..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp --------------------------CCSEEEEEEEEEC--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 3344444 6889999999999999999999 9999999999876555
Q ss_pred cce
Q psy17863 332 GLS 334 (341)
Q Consensus 332 ~~~ 334 (341)
.+.
T Consensus 343 ~~~ 345 (351)
T 3f3f_A 343 CMS 345 (351)
T ss_dssp EEE
T ss_pred hee
Confidence 444
No 59
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=273.38 Aligned_cols=286 Identities=16% Similarity=0.254 Sum_probs=224.1
Q ss_pred CCceeeeEEeee--CC--cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEEEEec
Q psy17863 1 MEYTCVQTIDCK--QG--AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 1 ~~~~~~~~l~~h--~~--~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
+|..+.+.|.+- .+ ..++|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE
Confidence 345566666532 22 35789999986 777764 9999999999999887764 6778899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEeecCCCce
Q psy17863 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSKDSQ 144 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~ 144 (341)
.||+|++||+++++.+..+.+|...+.++.+. +..+++++.++.+++|+...... ..........+..
T Consensus 87 ~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164 (318)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE
Confidence 99999999999999999999999988876654 67899999999999999876532 1223344556678
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE--
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC-- 222 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-- 222 (341)
+++++.|+.|++||+++++.......... .+...+..+.++|++..
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFT--------------------------------QHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEEC--------------------------------CCCSCEEEEEECTTSTTEE
T ss_pred EEEEecCcceeEEECCCCcccccceeeec--------------------------------ccCCceEEEEecCCCCcEE
Confidence 99999999999999987664332221111 12344555666665432
Q ss_pred -EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe--cCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 223 -ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG--SSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 223 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
+++++.++.|++||........... +...+..+ .++++++.++++ +.|+.|++||+.+++++..+. +|.+.|
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V 287 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSI--LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRV 287 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEE--EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCE
T ss_pred EEEecCCCCEEEEEeccccccccccc-ceeeeeee--eecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCE
Confidence 3467788999999998887766554 44556655 788888877654 489999999999999999998 899999
Q ss_pred EEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 300 NSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
++++|+|++++|++++ |++|+|||+.+.
T Consensus 288 ~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 288 LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999 999999998654
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-40 Score=273.26 Aligned_cols=268 Identities=15% Similarity=0.244 Sum_probs=230.1
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee---eEec--CcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYG--GHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
...+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3447999999999999999999999 999999999876533 3333 789999999999999999999999999999
Q ss_pred ECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEee-cCCCceEEEeecc
Q psy17863 83 EVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCL-DSKDSQIFCGSSD 151 (341)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~-~~~~~~~~~~~~~ 151 (341)
|+.+++ ....+..|...+.+++|+|+++++++++.||.|++||+++++ ...+..+. .+.+..+++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999887 566778899999999999999999999999999999988753 23344443 4456689999999
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEE
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~ 224 (341)
|.+++||+++.+....+. ....+.+++++|+++.++++. ++.+++|++.... +..++.+++|+|++++++
T Consensus 205 g~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp SEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEE
Confidence 999999999887766653 456799999999999998877 5899999997643 788999999999999999
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
+++.||.|++||+.+++.+... .|...+..+ +++|++++|++++.||.|++|++.
T Consensus 282 ~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSC--DISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEE-ECSSCEEEE--EECTTSCEEEEEETTSCEEEEEEE
T ss_pred EecCCCcEEEEECCCCeEEEEe-cCCCcEEEE--EECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999998887554 467777777 899999999999999999999974
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-41 Score=282.23 Aligned_cols=289 Identities=20% Similarity=0.244 Sum_probs=232.7
Q ss_pred eeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEec-------------CcccceeEEEEec-CCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------------GHAHEVNDATAAC-DSS 68 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~ 68 (341)
+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 34567888999999999999 99999999999999999999877655543 5999999999999 778
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+|++++.||.|++||+.+++....+. +...+.++.+++. +.++++++.|+.|++||+++++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------- 177 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--------------- 177 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---------------
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---------------
Confidence 99999999999999999998888776 7788999999984 4488899888888888887643
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCce-EEEe-CCCceEEEEcccc------------------
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSA-CGNNVKLWTAEED------------------ 205 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~~~~~~------------------ 205 (341)
....+. .+...+.+++++|+++. ++++ .++.+++||+...
T Consensus 178 ------------------~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 178 ------------------CSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp ------------------CCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred ------------------eeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 111111 24456899999999984 5454 4689999998653
Q ss_pred -----cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 206 -----YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 206 -----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
.+...|.+++|+|++++|++++.|+.|++||+.+++....+..+... ..... .....+..+++++.++.|
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE-ECCSSSSCEEEEEETTEE
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE-EecCCCceEEEEecCCEE
Confidence 36788999999999999999999999999999988776554432211 11111 223344567777889999
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++||+.+++++..+. +|...|++++|+|++++|++++ ||.|++|+++......
T Consensus 317 ~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 317 AVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999998 8999999999999999999999 9999999998875443
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=288.51 Aligned_cols=287 Identities=17% Similarity=0.252 Sum_probs=222.9
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----------eeeEecCcc------------cceeEEEEecCC-
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHA------------HEVNDATAACDS- 67 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 67 (341)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998776 577888998 889999999998
Q ss_pred -CEEEEecCCCcEEEEECCCCcee---------------------------------------ee-ecccCccEEEEEEc
Q psy17863 68 -SQIASGASDKSVILWEVTTGQPV---------------------------------------RR-WREHASKVTCVKFN 106 (341)
Q Consensus 68 -~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~ 106 (341)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764431 12 35799999999999
Q ss_pred CCCcEEEEecCCCeEEEEEecCC----------------CCcCeEEeecCCC--ceEEEeeccCeEEEEEccCCcc----
Q psy17863 107 EDSSVVISGSQDNTVMMWDVKSR----------------SHHPIQCCLDSKD--SQIFCGSSDGKIYKWQLVDSSQ---- 164 (341)
Q Consensus 107 ~~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---- 164 (341)
|++++|+++ .|+.|++||++.. ....+..+.+.++ ..+++++.||.|++||+++.+.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 7999999998831 1223555555554 6899999999999999988765
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-ccee
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELL 243 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~ 243 (341)
...+..+.... .. .....+...|.+++|+|++++|++++. +.|++||+++ ++++
T Consensus 266 ~~~~~~~~~~~----------~~--------------~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 266 SKLFEEPEDPS----------NR--------------SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp CEEECCC---------------C--------------CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred eeEeccCCCcc----------cc--------------ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 23332111000 00 000012347999999999999999998 9999999997 8888
Q ss_pred eeecCccccee-------------EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe------------------
Q psy17863 244 EEYKGHKSGDF-------------RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------------------ 292 (341)
Q Consensus 244 ~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 292 (341)
..+.+|..... ...++|+|++++|++|+.||.|++||+.+++.+.....
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS 400 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECS
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcccccc
Confidence 89988864322 11248999999999999999999999988876532110
Q ss_pred ------------eeeccceEEEEEcCCCcEEEEeCCCcEEEEEc
Q psy17863 293 ------------SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 324 (341)
Q Consensus 293 ------------~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~ 324 (341)
......|..++|+|++.+||+++.+.+++|.-
T Consensus 401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred CCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 02235688999999999999999556888874
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-41 Score=286.95 Aligned_cols=268 Identities=24% Similarity=0.376 Sum_probs=222.8
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.+|...|.+++| ++++|++|+.||.|++||..+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 456678999887 7899999999999999999999999999999999999998 788999999999999999999999
Q ss_pred eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-----------CeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 90 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-----------PIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
+..+..|...|.+++|++ ..+++++.||.|++||++++... .+..+.. .+..+++++.||.|++||
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEE
Confidence 999999999999999974 58999999999999999876532 2222222 456777788888888888
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
+++.+.+..+.. +...+.++.+ +++++++|+.||.|++||++
T Consensus 283 ~~~~~~~~~~~~------------------------------------~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 283 TSTCEFVRTLNG------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp TTTCCEEEEEEC------------------------------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred CCcCcEEEEEcC------------------------------------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 777655544432 3456777777 46789999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC---------ceEEEEeeeeccceEEEEEcCCCc
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS---------QISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
+++.+..+.+|...+.++ ++ ++++|++|+.||.|++||+.+++ ++..+. .|...|.+++| ++.
T Consensus 325 ~~~~~~~~~~h~~~v~~~--~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 325 CGACLRVLEGHEELVRCI--RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEF 396 (435)
T ss_dssp TCCEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSS
T ss_pred CCCEEEEEeCCcCcEEEE--Ee--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCC
Confidence 999999999999998877 55 68899999999999999998766 667776 89999999999 788
Q ss_pred EEEEeC-CCcEEEEEcccccCC
Q psy17863 310 HIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|++++ ||.|++|++.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 899999 999999999876543
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-42 Score=284.79 Aligned_cols=262 Identities=17% Similarity=0.283 Sum_probs=219.4
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
+..+..|+..+.....++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....++.|...|.+++|+|++++|+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence 34556788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEEecCCC---------------CcCeEEeecCC--CceEEEeeccCeEEEEEccCCcceeeeEeeecCce
Q psy17863 114 SGSQDNTVMMWDVKSRS---------------HHPIQCCLDSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 176 (341)
+++.|+.+++||+.... ...+..+.+.+ +..+++++.|++|++||+.+++.+..+....
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~---- 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF---- 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----
Confidence 99999999999986532 11222333333 3479999999999999999877654432110
Q ss_pred EEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEecc-ccceeeeecCccccee
Q psy17863 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDF 254 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~ 254 (341)
...|...+.++++++ +++++++|+.|+.|++||++ .++.+..+.+|...|.
T Consensus 201 ---------------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 201 ---------------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp ---------------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred ---------------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 012466788888876 78999999999999999997 4577889999999999
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee-----eccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-----GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
.+ +|+|++++|++|+.||+|++||+++++.+..+.... +...|++++|+|+|++|++++ ||.|++||+..+.
T Consensus 254 ~v--~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 254 SV--KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EE--EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred EE--EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 88 899999999999999999999999998887775211 123589999999999999999 9999999986554
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-40 Score=301.20 Aligned_cols=312 Identities=17% Similarity=0.219 Sum_probs=256.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+.++++.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-ceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC---------cCeEEeec-C--CCceEEEe
Q psy17863 83 EVTTG-QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLD-S--KDSQIFCG 148 (341)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~-~--~~~~~~~~ 148 (341)
|++++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.++.. ..+..+.+ + .+..++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred ECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 99987 66778888999999999999 889999999999999999876432 23333333 3 56799999
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCC
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDC 220 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~ 220 (341)
+.+|.|++||+.+++....+.. +...+.+++|+|++..+++++ ++.+++|+..... +...+.+++|+|++
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred eCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 9999999999998887766654 455699999999999888877 5899999988643 66799999999998
Q ss_pred CE-EEEeecCCeEEEEeccccceeeee-------------------------------------------cCcccceeEE
Q psy17863 221 QC-ILTCSTDECLRLFDKATGELLEEY-------------------------------------------KGHKSGDFRI 256 (341)
Q Consensus 221 ~~-l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 256 (341)
.. +++.+.++.+.+|++........+ ..+...+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 73 244455677888886543221111 1223334555
Q ss_pred EEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 257 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+++|+|+++++++ +|.+.+|++..... .+.+.+.+++|+|+++++++++ ++.|++|+.-.
T Consensus 363 --~~spdg~~la~~~-~~~~~i~~~~~~~~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~ 423 (814)
T 3mkq_A 363 --AHSPNGRFVTVVG-DGEYVIYTALAWRN-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK 423 (814)
T ss_dssp --EECTTSSEEEEEE-TTEEEEEETTTTEE-------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE
T ss_pred --EECCCCCEEEEec-CCEEEEEECccccc-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC
Confidence 8999999999998 89999999753321 2345688999999999999998 99999997543
No 66
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-40 Score=273.05 Aligned_cols=252 Identities=13% Similarity=0.198 Sum_probs=216.6
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
+...++.+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678899999999999999999999999999999999999999888988999999999999999999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+....... .......+ ..+...+.+++|+|++..+++++ ++.+++||++.
T Consensus 135 ~~~~~~~~---------------------------~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 135 LTFDKNEN---------------------------MAAKKKSV--AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp CCCCTTCC---------------------------SGGGCEEE--EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred Eecccccc---------------------------ccccceee--eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 87543110 00111111 23556799999999998877765 68999999876
Q ss_pred cc-------CCCCeEEEEEcc--CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 205 DY-------GQEPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
.. |...+.+++++| ++++|++|+.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.|++
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v--~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV--RYYPSGDAFASGSDDAT 263 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSC
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE--EEeCCCCEEEEEeCCCe
Confidence 54 778899999987 57899999999999999999999999999999999888 89999999999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++||++.++.+..+....+...+.+++|+|++++|++++ |+.|++||+.++.
T Consensus 264 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred EEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999887776665323445789999999999999999 9999999997654
No 67
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=272.68 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=203.5
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..+|.+.|++++|+|++++|++|+.|++|++|+..++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 3689999999999999999999999999999998765 45778899999999999999999999999999999999987
Q ss_pred Cc---eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 87 GQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 87 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+. .+..+..|...|.+++|+|++++|++++.|+.|++||++....
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-------------------------------- 184 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-------------------------------- 184 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--------------------------------
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--------------------------------
Confidence 64 4567788999999999999999999999999999999875320
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-----------------------cCCCCeEEEEEccC
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-----------------------YGQEPIVDACFTRD 219 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-----------------------~~~~~i~~~~~~~~ 219 (341)
........+...|.+++|+|+++++++++ ++.+++|+.... .|...|.+++|+|+
T Consensus 185 -~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 185 -VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp -EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred -EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 00111122456799999999999998876 589999996321 26678999999999
Q ss_pred CCEEEEeecCCeEEEEeccccce---------eeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 220 CQCILTCSTDECLRLFDKATGEL---------LEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+..|++++.|+.|++|+...+.. .....+|...|.++ +|+|++ .+|++|+.||+|++|++.+++.+..
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV--AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE--EECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe--EEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 99999999999999999865421 12345889999888 899987 4999999999999999988876655
Q ss_pred EE
Q psy17863 290 LI 291 (341)
Q Consensus 290 ~~ 291 (341)
.+
T Consensus 342 ~~ 343 (345)
T 3fm0_A 342 HH 343 (345)
T ss_dssp --
T ss_pred cc
Confidence 43
No 68
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.6e-41 Score=277.14 Aligned_cols=241 Identities=16% Similarity=0.279 Sum_probs=189.6
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee----EecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK----TYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
....+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|++++|+|++++|++++.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567999999999999986 5567889999999998876543 334799999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCC----------cCeEEeecCC--CceEEEee
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~--~~~~~~~~ 149 (341)
|+++++.+..++.|...|.+++|++++. ++++++.|+.|++||+++++. ..+..+.+.+ +..+++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 9999999999999999999999999764 789999999999999987542 1233333333 34677778
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 228 (341)
.|+.|++||+++.+....+.. +...|.+++|+|++ ++|++++.
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~~------------------------------------~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSAV------------------------------------HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSSCEEEEESSCGGGCEEECC------------------------------------CSSCEEEEEECSSSSCCEEEEET
T ss_pred cccceeEEECCCCcEeEEEec------------------------------------cceeEEEEEEcCCCCCEEEEEeC
Confidence 888888888877665554432 35678888888876 57899999
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
|++|++||+++++.+..+ +|...|..+ +|+| ++++|++++.||+|++|++.+....
T Consensus 291 D~~i~iwd~~~~~~~~~~-~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDL-SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp TSCEEEECTTSCEEEEEC-CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCEEEEEECCCCcEeEEC-CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 999999999998877654 799999888 8998 7899999999999999999765443
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.3e-40 Score=265.95 Aligned_cols=240 Identities=20% Similarity=0.410 Sum_probs=193.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+++++++|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCC------CcEEEEecCCCeEEEEEecCCC--------CcCeEEee-cCCCceEEEe
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNED------SSVVISGSQDNTVMMWDVKSRS--------HHPIQCCL-DSKDSQIFCG 148 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~-~~~~~~~~~~ 148 (341)
++ ++.+..+.+|...|.++.|.|. +..+++++.|+.|++||+++.+ ...+..+. .+.+.+++++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 85 5677888899999999999984 4489999999999999997643 12233332 2334456666
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
+.||.|++||+.+.+.+..+. ...++.+++|+|++.++++++.
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLS-------------------------------------AQDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEE-------------------------------------CCSCEEEEEECSSSSEEEEEET
T ss_pred eCCCeEEEEECCCCcEEEEec-------------------------------------CCCcEEEEEEcCCCCEEEEEcC
Confidence 666666666666554433332 2456788888888888887765
Q ss_pred CCeEEEEeccccceeeeecC--------cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 229 DECLRLFDKATGELLEEYKG--------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+ .+++|++..+..+..+.. |...+..+ +|+|+|++|++|+.||.|++||+.++
T Consensus 258 ~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 T-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL--AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE--EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred C-CcEEEEeCcCeeeeccCccccccccCcCcceeEE--EECCCCCEEEEeecCceEEEEEEeec
Confidence 4 589999887766655542 33445555 89999999999999999999998765
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=281.36 Aligned_cols=289 Identities=13% Similarity=0.199 Sum_probs=233.5
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEEC----CCCc------eeeeecc--------
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEV----TTGQ------PVRRWRE-------- 95 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~-------- 95 (341)
..+.+|+............|...|++++|+|+++ +|++++.||.|++|++ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 4466788766555545555779999999999999 9999999999999999 8887 4444443
Q ss_pred --cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------CCcCeEEeec-CCCceEEEeeccCeEEEEEccCCcce
Q psy17863 96 --HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCLD-SKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 96 --~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
|...|++++|+|++++|++++.||.|++||.... ....+..+.+ +.+..+++++.|+.+++||+.+++..
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 6779999999999999999999999999994332 1234444444 45668999999999999999988877
Q ss_pred eeeEeeecCc-------------eEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEEE
Q psy17863 166 STLIHSVGKA-------------VVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 166 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~ 225 (341)
..+....... .+.+++++|++.+++.+.++.+++|++.... +..++.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 6664432221 1788899999887777778999999988643 6789999999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
++.|+.|++||+++++.+..+.+|...+..+ +++|++ ++++++.||.|++||+.+++.+..+. .|...|.+++|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s 339 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA--SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVPIFAGRIS 339 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEE--EEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCCEEEEEEC
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEE--EECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCccEEEEEEc
Confidence 9999999999999999999999999998888 888998 99999999999999999999888888 788999999999
Q ss_pred CCCcEEEEeC-CCcEEEEEccccc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++++|++++ ||.|++|++.+..
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999 9999999998765
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-39 Score=264.41 Aligned_cols=245 Identities=23% Similarity=0.368 Sum_probs=208.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..+.+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEE-eecCCCceEEEeeccC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQC-CLDSKDSQIFCGSSDG 152 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~-~~~~~~~~~~~~~~~g 152 (341)
|+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++. .++.. ...+.+..+++++.|+
T Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999987541 22333 3345556788888899
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
.|++||+++.+....+..+... ...+......+++.++++|+.||.|
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNE---------------------------------KYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCS---------------------------------SSCCCEEEECSSSCEEEECCTTSCE
T ss_pred eEEEEECCCCcEEEEEEecCCc---------------------------------eEEEEEEEEeCCCcEEEEECCCCEE
Confidence 9999998877655444322111 1112222334678899999999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeee
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLV 282 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 282 (341)
++||+.+++.+..+.+|...+..+ +++|+++++++++ .|+.|++|+..
T Consensus 262 ~vwd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 262 YIWNLQTKEIVQKLQGHTDVVIST--ACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEE--EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEECCCchhhhhhhccCCcEEEE--eecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999988877 8999999999986 69999999853
No 72
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=264.84 Aligned_cols=244 Identities=21% Similarity=0.317 Sum_probs=191.5
Q ss_pred eeeeEE-ee-eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-------cceeeEecCcccceeEEEEecCCCEEEEec
Q psy17863 4 TCVQTI-DC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-------NLLLKTYGGHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 4 ~~~~~l-~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
+++..+ .+ |.+.|++++|+|++++|++|+.|++|++||... .+.+..+.+|...|.+++|+|++++|++++
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 445556 44 999999999999999999999999999999843 356677889999999999999999999999
Q ss_pred CCCcEEEEECCCC----ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 75 SDKSVILWEVTTG----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 75 ~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
.|++|++||+... +++..+.+|...|.+++|+|++++|++++.|+.|++||......
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------- 187 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------- 187 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-------------------
Confidence 9999999999432 45677889999999999999999999999999999999765310
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCC--CceEEEeC-CCceEEEEcccc----------------cCCCCe
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT--RKHIMSAC-GNNVKLWTAEED----------------YGQEPI 211 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~~~~~----------------~~~~~i 211 (341)
+.+..+ ..+...|.+++|+|+ +..+++++ ++.+++|++... .|...|
T Consensus 188 ------------~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v 253 (330)
T 2hes_X 188 ------------ECVAVL--NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253 (330)
T ss_dssp ------------EEEEEE--CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE
T ss_pred ------------eEEEEc--cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccce
Confidence 011111 224567999999998 56676655 689999998653 267889
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccc--eee-eecCccc-ceeEEEEEeCC--CCCEEEEecCCCcEEEEeeeC
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGE--LLE-EYKGHKS-GDFRIECCLDS--KDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~-~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 283 (341)
.+++|++++ +|++++.||.|++||..+++ ... .+.+|.. .+..+ +|+| ++++|++|+.||.|++|++++
T Consensus 254 ~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v--~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 254 YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE--EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE--EEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999765 79999999999999988763 332 3356776 77777 7888 788999999999999999864
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-41 Score=282.87 Aligned_cols=271 Identities=12% Similarity=0.156 Sum_probs=225.4
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVT 85 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 85 (341)
.|...|++++|+|++++|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4889999999999999999999999999999987 4578888999999999999998 8999999999999999999
Q ss_pred CCc------eee---eecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCC--------------CcCeEEeecCC
Q psy17863 86 TGQ------PVR---RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS--------------HHPIQCCLDSK 141 (341)
Q Consensus 86 ~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~ 141 (341)
+++ ... .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++ ...+..+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 333 33678999999999998 7899999999999999988743 23455555555
Q ss_pred C--ceEEEeeccC---eEEEEEccCCc-ceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEccccc-------
Q psy17863 142 D--SQIFCGSSDG---KIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDY------- 206 (341)
Q Consensus 142 ~--~~~~~~~~~g---~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~------- 206 (341)
+ ..+++++.++ .|++||+++.. ....+. ..+...+.+++|+| +++++++++ ++.+++|++....
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 4 4789999998 99999999864 344333 13456799999999 888888876 5899999987643
Q ss_pred CCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccceeeeecC-----------------------------------cc
Q psy17863 207 GQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKG-----------------------------------HK 250 (341)
Q Consensus 207 ~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------------------~~ 250 (341)
|...+.+++|+|++ .++++++.|+.|++||+.+++....... |.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 77889999999999 8999999999999999987654332211 44
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
.++..+ +|+|+|++|++++.||.|+||++.+.
T Consensus 384 ~~~~~~--~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAA--HWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCC--EEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccce--EEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 455455 89999999999999999999998764
No 74
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-39 Score=270.55 Aligned_cols=245 Identities=22% Similarity=0.359 Sum_probs=198.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred ccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC---------------CcCeEEee-cCCCceEEEeeccCeEEEE
Q psy17863 95 EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCL-DSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 95 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~g~i~~~ 157 (341)
+...+.+++|+| ++++|++++.|+.|++||++++. ...+..+. .+.+..+++++.|+.|++|
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 567899999999 89999999999999999987643 12334444 4456689999999999999
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
|+++............ +... . .-..|...|.+++|+|++.+|++++.|+.|++||.
T Consensus 284 d~~~~~~~~~~~~~~~------------~~~~--------~----~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 284 NLQNANNKSDSKTPNS------------GTCE--------V----TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EC---------------------------CEE--------E----EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ECCCCCCcccccCCCC------------Ccce--------E----EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9987543222111000 0000 0 00125678999999999999999999999999999
Q ss_pred cccceeeeecCcccceeEEEEE----eCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 238 ATGELLEEYKGHKSGDFRIECC----LDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
.+++.+..+.+|...+..+.+. ++|++++|++|+.||+|++|++...
T Consensus 340 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999999888432 2357889999999999999998654
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.2e-39 Score=271.92 Aligned_cols=270 Identities=15% Similarity=0.183 Sum_probs=224.2
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
+..| ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 3344 445566789999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-----------eEE---------------------
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-----------IQC--------------------- 136 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~--------------------- 136 (341)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++... +..
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 252 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence 999999999999999999999999999999999999998754111 111
Q ss_pred -eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEccccc-------
Q psy17863 137 -CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY------- 206 (341)
Q Consensus 137 -~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~------- 206 (341)
...+.+..+++++.||.|++||+++.+....+.. .+...+.+++|+|++. ++++++ ++.+++||+....
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 1124556899999999999999998877666543 2456799999999998 777766 5899999997643
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc---------eeeeecCcccceeEEEEEeCCCCC---EEEEecC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDS---QIFCGSS 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 272 (341)
+...+.++ +.+++++|++++.|+.|++|++.... ....+..|...+..+ +|+|+++ .+++.+.
T Consensus 332 ~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 332 INEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF--CYVSDDESNGEVLEVGK 408 (420)
T ss_dssp ESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE--EEECCSSSSCEEEEEET
T ss_pred ccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE--EEccCCCCcceEEEEcC
Confidence 45667777 45578899999999999999987632 223455677788877 8899998 7888888
Q ss_pred CCcEEEEeeeC
Q psy17863 273 DGKIYKWQLVD 283 (341)
Q Consensus 273 dg~i~iwd~~~ 283 (341)
+|.+.+|++++
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 99999999865
No 76
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-38 Score=260.87 Aligned_cols=242 Identities=19% Similarity=0.340 Sum_probs=201.7
Q ss_pred ceeeEecCcccceeEEEE-----ec-CCCEEEEecCCCcEEEEECCCC-------ceeeeecccCccEEEEEEcCCCcEE
Q psy17863 46 LLLKTYGGHAHEVNDATA-----AC-DSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
++...+++|...|++++| ++ ++++|++|+.|++|++||+.++ .+...+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456678999999999999 76 8999999999999999998753 3456788999999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe
Q psy17863 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
++++.|++|++||+++++ ....+. .+...|.+++|+|+++.++++
T Consensus 92 ~s~s~D~~v~lwd~~~~~---------------------------------~~~~~~--~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGT---------------------------------TYKRFV--GHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEETTSEEEEEETTSSC---------------------------------EEEEEE--CCCSCEEEEEECSSTTEEEEE
T ss_pred EEEcCCCcEEEEECCCCc---------------------------------EEEEEc--CCCCcEEEEEECCCCCEEEEE
Confidence 999999999999987643 111121 244568999999999888877
Q ss_pred C-CCceEEEEcccc---------cCCCCeEEEEEccCC----------CEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 193 C-GNNVKLWTAEED---------YGQEPIVDACFTRDC----------QCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 193 ~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
+ ++.+++||+... .+...+.+++|+|++ .++++++.|+.|++||. ..+....+.+|...
T Consensus 137 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 6 589999998532 367789999999987 78999999999999994 46677788999999
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
+..+ +|+|++++|++|+.||.|++||+.+. .....+ .+...|.+++|+|++++++++.|+.|++|++.+..
T Consensus 216 v~~~--~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 216 VNHL--SISPNGKYIATGGKDKKLLIWDILNLTYPQREF---DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEE--EECTTSSEEEEEETTCEEEEEESSCCSSCSEEE---ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred ceEE--EECCCCCEEEEEcCCCeEEEEECCCCcccceee---cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 9888 89999999999999999999999544 344444 35567999999999998887779999999997654
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-40 Score=296.06 Aligned_cols=267 Identities=19% Similarity=0.221 Sum_probs=210.7
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEecC--CCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 81 (341)
+..+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999999999999999999999999987 56778889999999999999988 999999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+.+++ .+..+..|...|.+++|+|+ ++.+++++.||.|++||++.......
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----------------------- 138 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----------------------- 138 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC-----------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce-----------------------
Confidence 9999886 67778889999999999998 99999999999999999886531111
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.....+...+.+++++|..... .......+++.++++|+.||.|++||+
T Consensus 139 ----------~~~~~~~~~v~~l~~~p~~~~~---------------------~~~~~~~~d~~~l~sgs~dg~I~iwd~ 187 (753)
T 3jro_A 139 ----------IIIDAHAIGVNSASWAPATIEE---------------------DGEHNGTKESRKFVTGGADNLVKIWKY 187 (753)
T ss_dssp ----------EEEECCSSCEEEEEECCCC------------------------------CGGGCCEEEEETTSCEEEEEE
T ss_pred ----------eEeecCCCceEEEEecCccccc---------------------ccccccCCCCCEEEEEECCCeEEEEec
Confidence 1111123334445444432100 000111336889999999999999999
Q ss_pred ccc----ceeeeecCcccceeEEEEEeCCC---CCEEEEecCCCcEEEEeeeCCCceE---EEEeeeeccceEEEEEcCC
Q psy17863 238 ATG----ELLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGKIYKWQLVDSSQIS---TLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 238 ~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~ 307 (341)
+++ .....+.+|...+.++ +|+|+ ++++++|+.||.|++||+.+++... ......|...|++++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 265 (753)
T 3jro_A 188 NSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265 (753)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT
T ss_pred cCCcccceeeeeecCCCCcEEEE--EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC
Confidence 876 5567788999999888 89999 8999999999999999998874221 1112257889999999999
Q ss_pred CcEEEEeC-CCcEEEEEccccc
Q psy17863 308 RKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+++|++++ ||.|++|++..+.
T Consensus 266 g~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 266 GNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp TCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEEcCCCEEEEEecCCCC
Confidence 99999999 9999999998543
No 78
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.2e-38 Score=259.29 Aligned_cols=297 Identities=12% Similarity=0.128 Sum_probs=211.3
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw 82 (341)
+++.+++.|.+.|++++|+|||++|++|+.++ +++|+..+++....... ..+..+++.++++.+ ++++.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34556789999999999999999999998775 78999988776655432 358888999988887 567888999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-CCc-C----eEEeecCCCceEEE--eeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-SHH-P----IQCCLDSKDSQIFC--GSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~-~----~~~~~~~~~~~~~~--~~~~g~i 154 (341)
|+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.+. +.. . ...+...+ ..++. |+.+|.|
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v 161 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQI 161 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCE
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEE
Confidence 999999998887 67799999999864 3333 4789999999886 311 1 11111222 44444 6899999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe-EE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC-LR 233 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~ 233 (341)
++||+.+.+.......... .....|. +. .-..|..+|.+++|+|+|++|++++.|++ |+
T Consensus 162 ~iwd~~~~~~~~~~~~~~~-----~~~~~p~-----------~~----~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQ-----QKAILGK-----------GV----LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EEEECCC-----------------------C-----------CE----EECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEEECCCCCcccccccccc-----ccccCcc-----------cE----EEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 9999987653211110000 0000000 00 01226788999999999999999999998 99
Q ss_pred EEeccccceeeeec-C-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce--EEE------------------E
Q psy17863 234 LFDKATGELLEEYK-G-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STL------------------I 291 (341)
Q Consensus 234 i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~------------------~ 291 (341)
+||+++++.+..+. + |...+..+ +|+|++++|++++.|++|++||+..+... ..+ .
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~--~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDM--KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEE--EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEE--EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 99999999999998 5 89988888 89999999999999999999999765321 110 0
Q ss_pred -eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 292 -HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 292 -~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
......+...++|++++++|++++ ||.+++|++..+...
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 001122346799999999999999 999999999876543
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.2e-38 Score=266.74 Aligned_cols=252 Identities=16% Similarity=0.248 Sum_probs=210.8
Q ss_pred eEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCC----------cceeeEecCcccceeEEEEecCCC-EEEEec
Q psy17863 7 QTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYR----------NLLLKTYGGHAHEVNDATAACDSS-QIASGA 74 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 74 (341)
..+..|.+.|++++|+|+ +.+|++++.||.|++|++.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456679999999999997 78999999999999999876 577888899999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 75 SDKSVILWEVTTGQP-------VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
.||.|++|++.++.. ...+..|...|.+++|+| ++.+|++++.||.|++||+++...
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------- 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------- 266 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------------
Confidence 999999999987432 455678999999999999 788999999999999999886431
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEEE
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CILT 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 225 (341)
.+....+. .+...+.+++|+|++. ++++
T Consensus 267 ---------------~~~~~~~~------------------------------------~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 267 ---------------SKPSHTVD------------------------------------AHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp ---------------SSCSEEEE------------------------------------CCSSCEEEEEECSSCTTEEEE
T ss_pred ---------------CcceeEee------------------------------------cCCCCeEEEEeCCCCCCEEEE
Confidence 01111111 1245678888888876 6889
Q ss_pred eecCCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCC--------------CceEE
Q psy17863 226 CSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS--------------SQIST 289 (341)
Q Consensus 226 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~ 289 (341)
|+.||.|++||+++ ..++..+..|...+..+ +|+|+++ +|++++.||.|++||+... +.+..
T Consensus 296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i--~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EETTSEEEEEETTCTTSCSEEEECCSSCEEEE--EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE--EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 99999999999987 56788899999999888 8999885 6999999999999999872 34444
Q ss_pred EEeeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEccccc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~ 328 (341)
+. +|...|++++|+|+++ +|++++ |+.|++|++.+..
T Consensus 374 ~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 374 HG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 44 7888999999999999 889999 9999999998653
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-38 Score=262.28 Aligned_cols=246 Identities=18% Similarity=0.285 Sum_probs=202.4
Q ss_pred eCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 86 (341)
|...|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 5578999999999 67999999999999999999999999999999999999999 999999999999999999999
Q ss_pred Cceeeee---cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC----------------------------------
Q psy17863 87 GQPVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR---------------------------------- 129 (341)
Q Consensus 87 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------------------------------- 129 (341)
++.+..+ ..|...|.+++|+|++++|++++.||.|++||++++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9988887 689999999999999999999999999999998864
Q ss_pred --CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 130 --SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
....+.++.+. +..+++++.|+.|++||+.+.......... .......+. ....+
T Consensus 228 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~ 284 (366)
T 3k26_A 228 DIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKP-SESNVTILG---------------------RFDYS 284 (366)
T ss_dssp SSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCT-TCCCEEEEE---------------------EEECS
T ss_pred cCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCcccccccccc-CCcchheec---------------------ccccc
Confidence 22233334333 679999999999999999876542221110 000000000 01124
Q ss_pred CCCeEEEEEccC--CCEEEEeecCCeEEEEecccccee----eeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 208 QEPIVDACFTRD--CQCILTCSTDECLRLFDKATGELL----EEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 208 ~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
...+.+++|+|+ +++|++++.||.|++||+.+++.. ..+.+| ...+..+ +|+|++++|++++.||.|++|
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT--SFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE--EeCCCCCeEEEEeCCCEEEEE
Confidence 567889999999 999999999999999999987643 377777 6777777 899999999999999999999
Q ss_pred eee
Q psy17863 280 QLV 282 (341)
Q Consensus 280 d~~ 282 (341)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 975
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-38 Score=268.05 Aligned_cols=253 Identities=15% Similarity=0.251 Sum_probs=209.5
Q ss_pred eeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCC-CEEEEecC
Q psy17863 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDS-SQIASGAS 75 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 75 (341)
.+..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3456789999999999999 9999999999999999999887 6678889999999999999998 69999999
Q ss_pred CCcEEEEECCCCceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 76 DKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------------------- 209 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT----------------------- 209 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----------------------
Confidence 999999999999999998 7899999999999999999999999999999987543
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe---ecCC
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC---STDE 230 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~ 230 (341)
....+... + ....+.++.|+|+++++++| +.|+
T Consensus 210 ----------~~~~~~~~-~---------------------------------~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 210 ----------VVAEKDRP-H---------------------------------EGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp ----------EEEEEECS-S---------------------------------CSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ----------eeeeeccC-C---------------------------------CCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 11111000 0 02236778899999999998 7899
Q ss_pred eEEEEeccccce-eeeec-CcccceeEEEEEeCCCCCEEE-EecCCCcEEEEeeeCCCc-eEEEEeeeeccceEEEEEcC
Q psy17863 231 CLRLFDKATGEL-LEEYK-GHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 231 ~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~ 306 (341)
.|++||+++++. +.... .|...+..+ +++|++++|+ +|+.||.|++||+.+++. +..+....+..+|.+++|+|
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLP--FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEE--EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred eEEEEcCccccCCceEEeccCCCceeEE--EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 999999988764 33332 456667666 8999999986 566899999999999885 66666334568999999999
Q ss_pred CCcEEEEeCCCcEEEEEcccc
Q psy17863 307 TRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~d~~i~vw~~~~~ 327 (341)
++.+++++ ++.+++|++.++
T Consensus 324 ~~~~~~s~-~~~~~~~~l~~~ 343 (402)
T 2aq5_A 324 KRGLEVNK-CEIARFYKLHER 343 (402)
T ss_dssp GGGSCGGG-TEEEEEEEEETT
T ss_pred ccccceec-ceeEEEEEcCCC
Confidence 99987643 779999999864
No 82
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-37 Score=255.83 Aligned_cols=247 Identities=25% Similarity=0.436 Sum_probs=201.7
Q ss_pred CCCcceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECCCCc-----eeeeecccCccEEEEEEcCCCcEEEEe
Q psy17863 42 PYRNLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQ-----PVRRWREHASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 42 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (341)
.++.++..+|++|.+.|++++|+|+ +++|++|+.|++|++||+.+++ +...+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3445666789999999999999997 6899999999999999987654 456778999999999999999999999
Q ss_pred cCCCeEEEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 116 SQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 116 ~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.|+.|++|+...... ........+.+..+++++.|+.+++||...........
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----------------- 167 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----------------- 167 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----------------
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-----------------
Confidence 9999999999876431 22233344556678888888888888876543221111
Q ss_pred ceEEEeCCCceEEEEcccccCCCCeEEEEEccCC--CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC
Q psy17863 187 KHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC--QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 264 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (341)
..+...+..++|++++ .++++++.|+.|++||+++++.+..+.+|...+.++ +|+|++
T Consensus 168 ------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~--~~s~~~ 227 (340)
T 4aow_A 168 ------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPDG 227 (340)
T ss_dssp ------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTS
T ss_pred ------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE--EECCCC
Confidence 1134567777777653 568899999999999999999999999999999888 899999
Q ss_pred CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
++|++|+.||.|++||+.+.+++..+. +...|.+++|+|++.+++++.|+.|++|++++..
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEE---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred CEEEEEeCCCeEEEEEeccCceeeeec---CCceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 999999999999999999998888776 4578999999999887766669999999998653
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.9e-37 Score=263.74 Aligned_cols=272 Identities=19% Similarity=0.315 Sum_probs=225.1
Q ss_pred eeeEecCcccce-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 47 LLKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 47 ~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
....+.+|...+ .++.+ ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ .+++++.||.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456788898875 55555 57799999999999999999999999999999999999999988 899999999999999
Q ss_pred ecCCC--------CcCeEEeec---CCCceEEEeeccCeEEEEEccCCcceeee---------------------Eeeec
Q psy17863 126 VKSRS--------HHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTL---------------------IHSVG 173 (341)
Q Consensus 126 ~~~~~--------~~~~~~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~~~~---------------------~~~~~ 173 (341)
+++++ ...+.++.. +++..+++++.||.+++||+++....... ....+
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 98753 233433333 45578999999999999999887644321 12223
Q ss_pred CceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee
Q psy17863 174 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 245 (341)
...+.++ ++++..+++++ ++.+++||+.... +...+.+++|+|+++++++++.||.|++||+++++.+..
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 3445554 57777777776 6899999987643 788999999999999999999999999999999999999
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+.+|...+..+ +++ +++|++++.||.|++||+.+++...... +...+..++|+|++++|++++|+.|++|++.
T Consensus 348 ~~~h~~~v~~~--~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 348 LQGHTALVGLL--RLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp ECCCSSCEEEE--EEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEETTEEEEEETT
T ss_pred EeCCCCcEEEE--EEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEeCCCEEEEecCCeEEEEECC
Confidence 99999999887 555 5799999999999999999887665553 6778888999999999999999999999998
Q ss_pred cccCC
Q psy17863 326 EDYGQ 330 (341)
Q Consensus 326 ~~~~~ 330 (341)
++...
T Consensus 421 ~g~~~ 425 (464)
T 3v7d_B 421 SGKLV 425 (464)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87544
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-37 Score=259.18 Aligned_cols=248 Identities=17% Similarity=0.295 Sum_probs=205.8
Q ss_pred eeeEEee-eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d 202 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHD 202 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEe
Confidence 3444554 78999999999999999999999999999999999999999999999999994 67999999999999999
Q ss_pred CC-CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
++ .+..+..+..|...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------------------------------- 250 (401)
T 4aez_A 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-------------------------------- 250 (401)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------------------------------
T ss_pred cccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------------------------------
Confidence 98 566788888999999999999999999999999999999987643
Q ss_pred cceeeeEeeecCceEEEEEECCCCc-eEEEeC---CCceEEEEccccc------CCCCeEEEEEccCCCEEEE--eecCC
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC---GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILT--CSTDE 230 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~--~~~d~ 230 (341)
....+ ..+...+.+++|+|++. ++++++ ++.+++||+.... +...+.+++|+|+++++++ |+.||
T Consensus 251 -~~~~~--~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 251 -PKFTK--TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp -EEEEE--CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred -ccEEe--cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCC
Confidence 11111 12445689999999775 445443 6899999987654 6778999999999999999 55899
Q ss_pred eEEEEecccccee--eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 231 CLRLFDKATGELL--EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 231 ~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.|++||+.+++.. ..+.+|...+..+ +++|++++|++++.||.|++|++.+++.+....
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYS--ALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEE--EECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEE--EECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999986544 4567899999888 899999999999999999999999988776654
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.2e-37 Score=258.94 Aligned_cols=249 Identities=15% Similarity=0.299 Sum_probs=208.3
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
.+.+|...|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...+.++.++ +..|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 344678899999999999999999999999999999999999999999999988875 679999999999999998764
Q ss_pred -ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 88 -QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 88 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
..+..+.+|...+..+.++|+++++++++.|+.+++|+...++.... .+.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----------------------------~~~ 270 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----------------------------PLQ 270 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----------------------------CSE
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----------------------------eee
Confidence 45677889999999999999999999999999999999987652111 111
Q ss_pred eeEeeecCceEEEEEECCCCceEE-Ee---CCCceEEEEccccc------CCCCeEEEEEccCCCEEEEee--cCCeEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIM-SA---CGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS--TDECLRL 234 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~--~d~~i~i 234 (341)
....+. ..|..++|+|.+..++ ++ .++.|++||+.... ....+.++.|+|+++.+++++ .|+.|++
T Consensus 271 ~~~~~~--~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 271 TFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EECCCS--SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eecccC--CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 111111 2488899999776544 32 25899999998754 667899999999999988765 7899999
Q ss_pred EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
||+.+++++.++.+|...|..+ +|+|+|++|++|+.|++|+|||+.+..+.....
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l--~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred EECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 9999999999999999999988 899999999999999999999998877666555
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=268.70 Aligned_cols=283 Identities=11% Similarity=0.215 Sum_probs=219.4
Q ss_pred EccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEec-CCCEEEEecCCCcEEEEECCC---Cce---eee
Q psy17863 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT---GQP---VRR 92 (341)
Q Consensus 21 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~---~~~---~~~ 92 (341)
|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.. ...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566677777655 488 567888888 88999999999999 999999999999999999876 432 223
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
+ .|...|.+++|+|++++|++++.||.|++||++....... +.... ...+..+....
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------------~~~~~---~~~i~~~~~~~ 164 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-------------------VKFLN---CECIRKINLKN 164 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-------------------EEEEE---EEEEEEEEGGG
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-------------------eeccc---cceeEEEEccC
Confidence 3 4899999999999999999999999999999963210000 00000 00111111111
Q ss_pred --cCceEEEEE--ECCCCceEEEeC-CCceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 173 --GKAVVNSLC--SHPTRKHIMSAC-GNNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 173 --~~~~~~~~~--~~~~~~~~~~~~-~~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
....+.++. +++++..+++++ ++.+++||+.... |...|.+++|+|++++|++++.||.|++||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 233455555 678888888877 4899999987643 56899999999999999999999999999999
Q ss_pred ccceeeeec-CcccceeEEEE--EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----------------------
Q psy17863 239 TGELLEEYK-GHKSGDFRIEC--CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---------------------- 293 (341)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 293 (341)
+++++..+. .|...+..+.+ .+++++.+|++|+.||.|++||+.+++.+..+...
T Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 245 FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 999988886 67777877743 24467889999999999999999999888777621
Q ss_pred --eeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccce
Q psy17863 294 --VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 294 --~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
.|...|++++|+ ++++|++++ |+.|++|++.++.....+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 166779999999 789999999 9999999999877655443
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-37 Score=256.63 Aligned_cols=239 Identities=16% Similarity=0.189 Sum_probs=211.0
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..|..+|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999887 8888999999999999999999999999999999999875
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY- 206 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 206 (341)
++ .........+...+.+++|+|+++++++++ ++.+++|++....
T Consensus 84 ~~---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 130 (372)
T 1k8k_C 84 RT---------------------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 130 (372)
T ss_dssp TE---------------------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred Ce---------------------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc
Confidence 43 111111122455699999999999988876 5899999987643
Q ss_pred ----------CCCCeEEEEEccCCCEEEEeecCCeEEEEec------------------cccceeeeecCcccceeEEEE
Q psy17863 207 ----------GQEPIVDACFTRDCQCILTCSTDECLRLFDK------------------ATGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 207 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~~~~~~~ 258 (341)
+...+.+++|+|+++++++++.|+.|++||+ ..++.+..+.+|...+..+
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 208 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV-- 208 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE--
Confidence 5788999999999999999999999999995 4677888888999988888
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++|++++|++++.||.|++||+.+++++..+. .|..+|.+++|+|++++|+++.|+.|++|++..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 899999999999999999999999999999998 788899999999999999988899999999987
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=266.95 Aligned_cols=269 Identities=9% Similarity=0.052 Sum_probs=207.0
Q ss_pred eeEEeeeCCcEEEEEEccC------CCEEEEEeCCCeEEEEcCCCcce-----------eeEecCcccceeEEEEecCCC
Q psy17863 6 VQTIDCKQGAIRAVRFNVD------GSYCLTCGSDKKIKLWNPYRNLL-----------LKTYGGHAHEVNDATAACDSS 68 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~------~~~l~t~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~ 68 (341)
..++.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++. ...+.+|...|++++|+++ .
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~ 278 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T 278 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C
Confidence 3457788999999999997 57999999999999999976642 2467889999999999986 4
Q ss_pred EEEEecCCCcEEEEECCCCc-eeeeecccCccEEEE--EEcCCC-cEEEEecCCCeEEEEEecCCCC----------cCe
Q psy17863 69 QIASGASDKSVILWEVTTGQ-PVRRWREHASKVTCV--KFNEDS-SVVISGSQDNTVMMWDVKSRSH----------HPI 134 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----------~~~ 134 (341)
.|++|+.||+|++||+++++ +...+.+|...|.++ +|+|++ .+|++++.|++|++||+++++. ..+
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 89999999999999999774 455688999999999 568887 8999999999999999976331 112
Q ss_pred -EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccccCC----
Q psy17863 135 -QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ---- 208 (341)
Q Consensus 135 -~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~---- 208 (341)
.....+....+++++.|++|++||+++......+.. +...|.+++|+|+++.+++++ ++.+++|+.......
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~ 436 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKN 436 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC--
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcccccc
Confidence 233444466899999999999999999887666654 566799999999999988876 589999998654311
Q ss_pred -------CCeEEEEEccCCCEEEEeecCCeEEEEecc-ccceeeeecCcccceeEEEEEeCCCCC---EEEEecCCCcEE
Q psy17863 209 -------EPIVDACFTRDCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDS---QIFCGSSDGKIY 277 (341)
Q Consensus 209 -------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~ 277 (341)
..+.+++|+|+++.+.. .. ...+|+.. ++..+..+.+|...|..+ +|+|+++ .+|+|+.||.|+
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V~~V--afsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINITCT--KWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSCCCE--EECCSTTTTTEEEEECTTSEEE
T ss_pred CccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceEEEE--ECCCCCCccHHHHhhccCceEE
Confidence 14678999999985532 22 33444433 467788899999999988 8999854 999999999999
Q ss_pred EEeee
Q psy17863 278 KWQLV 282 (341)
Q Consensus 278 iwd~~ 282 (341)
||++.
T Consensus 512 lw~l~ 516 (524)
T 2j04_B 512 LEYLS 516 (524)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99975
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.3e-36 Score=255.85 Aligned_cols=266 Identities=22% Similarity=0.398 Sum_probs=228.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+++.++.+|.+.|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++.+++++.||.|++|
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW 224 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence 46778899999999999997 5699999999999999999999999999999999999996 5689999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|+.+++.+..+.+|...|.+++| +++++++++.||.|++||+++++ ...+..+.. .+..+++++.||.|
T Consensus 225 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 225 DIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSI 301 (445)
T ss_dssp ESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCE
T ss_pred ECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeE
Confidence 99999999999999999999999 67899999999999999987643 233444444 67789999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----------CCCCeEEEEEccCCCEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l 223 (341)
++||+++++....+.. +...+.++.++ +..+++++ ++.+++||+.... +..+|.+++|+ ++++
T Consensus 302 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTG--HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp EEEETTTCCEEEEECC--CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred EEEECCCCCEEEEEcC--CcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 9999999887776654 34457777664 45666655 6899999986533 66789999985 5899
Q ss_pred EEeecCCeEEEEeccccceeeee-----cCcccceeEEEEEeCCCCCEEEEecCCCc----EEEEeeeC
Q psy17863 224 LTCSTDECLRLFDKATGELLEEY-----KGHKSGDFRIECCLDSKDSQIFCGSSDGK----IYKWQLVD 283 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----i~iwd~~~ 283 (341)
++++.||.|++||+.+++.+..+ .+|...+..+ +++|++.++++|+.||+ |.+||+..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI--RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE--EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE--EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999988887 4677778777 89999999999999998 99999865
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=262.21 Aligned_cols=280 Identities=12% Similarity=0.069 Sum_probs=216.4
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.-...|.+++|+|||+++|+++.|++|+ |...+ ..+++|...|.+++|+|+| .++.+.+|+ ++..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence 3457899999999999999999999999 65444 4457999999999999998 455555555 3332
Q ss_pred eeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEec------CCCC----cCeEE-eecCCCceEEEeeccCeEEEEE
Q psy17863 91 RRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------SRSH----HPIQC-CLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 91 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~~----~~~~~-~~~~~~~~~~~~~~~g~i~~~d 158 (341)
..+. .|...|.+++|+|+|++|++++.||.|++||.+ .... ..+.. .+.+++..+++|+.||+|++||
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 2332 458899999999999999999999999999932 1221 12444 4556667999999999999999
Q ss_pred ccCCcc-------eeeeEe--eecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----------CCCCeEEEEEcc
Q psy17863 159 LVDSSQ-------ISTLIH--SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----------GQEPIVDACFTR 218 (341)
Q Consensus 159 ~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~i~~~~~~~ 218 (341)
+.++.. +..+.. ..+...|.+++|+|++ +++++.++.+++|++.... |...|.+++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 998753 233321 2245689999999999 7777888999999986533 45679999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe--CCCCCEEEEecCCCcEEEEeeeC-------------
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL--DSKDSQIFCGSSDGKIYKWQLVD------------- 283 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~------------- 283 (341)
++.+++++ ++.|++||+.+++......+|...+..+ ++ +|++..++++++||+ ++|....
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v--a~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII--PLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE--EETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE--EeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 58888887 6999999999877744444899999988 88 999999999999999 9998631
Q ss_pred ----------CCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 284 ----------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 284 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
++.+..+ .+...|.+++|||||+.+|+++
T Consensus 311 d~~v~lW~~~g~~l~~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 311 EKKFKKWSTIWNEFNNY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp HHHHHHTTTTTTSSSSS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCceeee---ccceEEEEEEECCCCCEEEEEE
Confidence 1111111 1245699999999999999987
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=256.73 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=219.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc---eeeEecC------------------------------------
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGG------------------------------------ 53 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------ 53 (341)
..++++++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966665 57899999999888 5555543
Q ss_pred ------------------cccceeEEEEecCCCEE-EEecCCCcEEEEECC--CCceeeeec--ccCccEEEEEEcCCCc
Q psy17863 54 ------------------HAHEVNDATAACDSSQI-ASGASDKSVILWEVT--TGQPVRRWR--EHASKVTCVKFNEDSS 110 (341)
Q Consensus 54 ------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 110 (341)
|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 23369999999999996 899999999999999 888888876 5678999999999999
Q ss_pred EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC---Cc
Q psy17863 111 VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT---RK 187 (341)
Q Consensus 111 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 187 (341)
+|++++.+|.+++|++.+...... ....+. .+...+.+++|+|+ ++
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~-----------------------------~~~~~~--~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF-----------------------------TQEPIL--GHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC-----------------------------CCCCSE--ECSSCEEEEEEEECTTSCE
T ss_pred EEEEEeCCCcEEEEecCCcccccc-----------------------------cceeee--cccCceEEEEEcCCCCCCc
Confidence 999999999999999876542110 111111 24467999999999 88
Q ss_pred eEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc---------
Q psy17863 188 HIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH--------- 249 (341)
Q Consensus 188 ~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------- 249 (341)
++++++ ++.|++|++.... |...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 888776 5899999987532 67899999999 9999999999999999999999988877633
Q ss_pred ----------------ccceeEEEEEeCCCCCEEEEec-CCCcEEEEee--eCC---CceEEEEeeeeccceEEEEEcCC
Q psy17863 250 ----------------KSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQL--VDS---SQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 250 ----------------~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
...+..+ +++|+++++++++ .|+.|++|++ .++ +.+..+. .+ ..|.+++|+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKI--IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FP-YNVISLSAHND 365 (450)
T ss_dssp TSBC----------CBCCCEEEE--EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CS-SCEEEEEEETT
T ss_pred cccccccccccccccceEEEEEE--EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cC-CceEEEEecCC
Confidence 2334444 8899999999998 8999999999 555 4445555 45 88999999996
Q ss_pred CcEEEEeC-C------CcEEEEEcccc
Q psy17863 308 RKHIMSAC-G------NNVKLWTAEED 327 (341)
Q Consensus 308 ~~~l~~~~-d------~~i~vw~~~~~ 327 (341)
+.++++++ + ..|.+|.++..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred cEEEEEecccCCCCCCcceEEEEEEcC
Confidence 55554444 3 34899987654
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-38 Score=262.92 Aligned_cols=238 Identities=12% Similarity=0.137 Sum_probs=196.6
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..+.++|++++|+|++++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4446779999999999999999999999999999988 78888999999999999999999999999999999999876
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY- 206 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 206 (341)
+... .. ......+...+.+++|+|+++.+++++ ++.+++|++....
T Consensus 87 ~~~~------------------------------~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 87 DGTW------------------------------KQ--TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp --CC------------------------------CC--EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CCce------------------------------ee--eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 5300 00 111122456799999999998888776 5899999987653
Q ss_pred ----------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc------------------ccceeeeecCcccceeEEEE
Q psy17863 207 ----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA------------------TGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 207 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~ 258 (341)
|...|.+++|+|++++|++++.|+.|++||+. .++++..+ +|...+..+
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-- 211 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV-- 211 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE--
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE--
Confidence 78899999999999999999999999999984 45667777 899888888
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCc----eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQ----ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+|+|++++|++++.||.|++||+.+++. +..+. .|..+|.+++|+|++++|++++++.+.+|+..
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 8999999999999999999999999988 66677 88999999999999999999995555677765
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=248.37 Aligned_cols=243 Identities=12% Similarity=0.200 Sum_probs=213.9
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC------CceEEE
Q psy17863 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG------NNVKLW 200 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 200 (341)
++++ ....+. ....+.+++|+|+++.++++.. +.+.+|
T Consensus 104 ~~~~---------------------------------~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 104 SNGQ---------------------------------CVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp TTCC---------------------------------EEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred CCCc---------------------------------EEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 7644 111111 3456899999999999988764 699999
Q ss_pred Eccccc------------------CCC--CeEEEEEccCCCEEEEeecCCeEEEEeccc-cceeeeecCcccceeEEEEE
Q psy17863 201 TAEEDY------------------GQE--PIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECC 259 (341)
Q Consensus 201 ~~~~~~------------------~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 259 (341)
++.... +.. .+.+++|+|+++++++++.||.|++||+++ ++.+..+..|...+..+ +
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--~ 225 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM--Q 225 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE--E
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE--E
Confidence 987653 122 899999999999999999999999999998 78888999999998888 8
Q ss_pred eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC--------------cEEEEEc
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN--------------NVKLWTA 324 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--------------~i~vw~~ 324 (341)
|+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++++ ++ .+++|++
T Consensus 226 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 226 FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred ECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 99999999999999999999999999888876 678899999999999999999 77 8999998
Q ss_pred ccccCC
Q psy17863 325 EEDYGQ 330 (341)
Q Consensus 325 ~~~~~~ 330 (341)
..+...
T Consensus 303 ~~~~~~ 308 (369)
T 3zwl_B 303 IFEEEI 308 (369)
T ss_dssp TTCCEE
T ss_pred CCCcch
Confidence 776543
No 94
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.9e-38 Score=261.46 Aligned_cols=267 Identities=16% Similarity=0.130 Sum_probs=181.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-----eEecCcccceeEEEEec--------CCCEEEEecCCCcEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-----KTYGGHAHEVNDATAAC--------DSSQIASGASDKSVI 80 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~ 80 (341)
..+....+++++.+|++++.|++|+|||..+++.. ..+.+|.+.|++++|+| |+++|++++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 33334444556678999999999999998877543 34679999999999998 789999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+||+.++.++..+..|..++.+++|+|++ .+|++++.|++|++||+++++...........
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~------------------ 231 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV------------------ 231 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C------------------
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc------------------
Confidence 99999988888888899999999999976 48999999999999999876521110000000
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEc-cCCCEEEEeecCCeEEEEecc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFT-RDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~ 238 (341)
....+......+..... ....+...+.++.|+ |+++.+++++.|+.+++||+.
T Consensus 232 -------------~~~~~~s~~~~~~~~~~-------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 232 -------------KNPWLLTLNTLPLVNTC-------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp -------------SCCCSEEEESGGGC-------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred -------------ccceEEecccccceeee-------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 00000011111100000 011245677888876 799999999999999999998
Q ss_pred ccceeeeecCcccceeEEE----------------EEeC--CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 239 TGELLEEYKGHKSGDFRIE----------------CCLD--SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~----------------~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
.++....+..|...+..+. ..++ .++.++++|+.||.|++||+.+++....+. .|..+|+
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--~~~~~V~ 363 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--QLGMPIV 363 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--ECSSCEE
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--CCCCcEE
Confidence 8776666655544333221 1222 245567889999999999999999888877 7889999
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 301 SLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++|+|||++||+++++.+.+|++..
T Consensus 364 svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 99999999999999977788888754
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.7e-37 Score=256.68 Aligned_cols=257 Identities=12% Similarity=0.129 Sum_probs=209.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccC----C---CEEEEEeCCCeEEEEcCCCcce-----eeEecCc-----ccceeEEEEe-
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD----G---SYCLTCGSDKKIKLWNPYRNLL-----LKTYGGH-----AHEVNDATAA- 64 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~----~---~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~- 64 (341)
++++..+.+|..+|++++|+|+ + ++|++++.||.|++||+.+++. ...+..| ...|.+++|+
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 4578889999999999999999 9 9999999999999999998887 8888888 5999999999
Q ss_pred ---cCCCE-EEEecCCCcEEEEECCC------Cceee-----ee-------cccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 65 ---CDSSQ-IASGASDKSVILWEVTT------GQPVR-----RW-------REHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 65 ---~~~~~-l~~~~~dg~i~iw~~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
|++++ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.||.|+
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~ 210 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ 210 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence 99999 99999999999999998 66666 66 3488999999999999 999999999999
Q ss_pred EEEecCCC--------------CcCeEEee-cCCCceEEEeecc---CeEEEEEccCCcceeeeEeeecCceEEEEEECC
Q psy17863 123 MWDVKSRS--------------HHPIQCCL-DSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184 (341)
Q Consensus 123 iwd~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (341)
+||+++.+ ...+..+. .+.+..+++++.| |.|++||+++.+.+..+......
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~---------- 280 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS---------- 280 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc----------
Confidence 99987642 22334433 3456689999999 99999999987765554321100
Q ss_pred CCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec------Cc---------
Q psy17863 185 TRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK------GH--------- 249 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~--------- 249 (341)
... . .....+...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|
T Consensus 281 ~~~-~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 281 SQA-S------------LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp ------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred ccc-c------------ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 000 0 0011146789999999999999999999999999999999999998 77
Q ss_pred ------ccceeEEEEEeCCCC----------CEEEEecCCCcEEEEeeeCCC
Q psy17863 250 ------KSGDFRIECCLDSKD----------SQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 250 ------~~~~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~ 285 (341)
...+..+ +|+|++ ++|++++.||.|++|++.+++
T Consensus 348 ~~~~~~~~~v~~~--~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 348 HGDSLAEPGVFDV--KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCBCSSCCEEEE--EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccCCceeEE--EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8888888 888998 799999999999999998764
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-36 Score=272.56 Aligned_cols=243 Identities=23% Similarity=0.397 Sum_probs=207.4
Q ss_pred eeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCC-----ceeeeecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 47 LLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG-----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
....+++|.+.|++++|+|++ ++|++|+.|++|++|++.+. .....+.+|...|.+++|+|++++|++++.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345688999999999999864 78999999999999999764 345678899999999999999999999999999
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 199 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 199 (341)
|++||+.++. ....+ ..+...|.+++|+|+++.+++++ ++.+++
T Consensus 454 v~vwd~~~~~---------------------------------~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 454 LRLWDLAAGV---------------------------------STRRF--VGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498 (694)
T ss_dssp EEEEETTTTE---------------------------------EEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEEECCCCc---------------------------------ceeEE--eCCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 9999987543 11111 12455689999999998888776 588999
Q ss_pred EEcccc----------cCCCCeEEEEEccCC--CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 200 WTAEED----------YGQEPIVDACFTRDC--QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 200 ~~~~~~----------~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
|+.... .|...|.+++|+|++ ..+++++.|+.|++||+++++....+.+|...+.++ +++|++++|
T Consensus 499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v--~~spdg~~l 576 (694)
T 3dm0_A 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV--AVSPDGSLC 576 (694)
T ss_dssp ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEE
T ss_pred EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE--EEeCCCCEE
Confidence 987432 267789999999987 589999999999999999999999999999999888 899999999
Q ss_pred EEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccC
Q psy17863 268 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
++|+.||.|++||+.+++.+..+. +...|.+++|+|++.+|++++++.|++||++++..
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI 635 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred EEEeCCCeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence 999999999999999998877765 45789999999999999888888899999987643
No 97
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.7e-36 Score=254.79 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=228.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee-----EecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-----TYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+.+..+..+ ..+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 445555544 446699999988888888889999999999988877 34578889999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------------------------- 245 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--------------------------- 245 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---------------------------
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---------------------------
Confidence 99999999999999988999999999999998885 55578888888876543
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeC---------CCceEEEEccccc------CCCCeEEEEEccCCCE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---------GNNVKLWTAEEDY------GQEPIVDACFTRDCQC 222 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~ 222 (341)
....+. ....+..++++|+++.++++. ++.+++||+.... +...+..++|+|+++.
T Consensus 246 ------~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 246 ------EIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENK 316 (433)
T ss_dssp ------EEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTE
T ss_pred ------EEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCE
Confidence 111111 123478999999998888776 5789999987643 3457889999999975
Q ss_pred E-EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---------------CCcEEEEeeeCCCc
Q psy17863 223 I-LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---------------DGKIYKWQLVDSSQ 286 (341)
Q Consensus 223 l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~ 286 (341)
+ ++++.++.|++||+.+++.+..+. +...+..+ +++|+++++++++. ||.|++||+.+++.
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTI--ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEE--EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeE--EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 5 566889999999999988887776 45556655 89999998888776 57999999999988
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+..+. . ...+.+++|+|++++|++++ |+.|++|++++
T Consensus 394 ~~~~~--~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWE--A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEE--C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEec--C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88776 3 56789999999999988764 99999999864
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=249.27 Aligned_cols=239 Identities=15% Similarity=0.211 Sum_probs=199.9
Q ss_pred eeeCCcEEEEEEccC---CCEEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEE------ecCCCEEEEecCCCcE
Q psy17863 10 DCKQGAIRAVRFNVD---GSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATA------ACDSSQIASGASDKSV 79 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i 79 (341)
.+|..+|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999998 6999999999999999999888 88899999999999965 6789999999999999
Q ss_pred EEEECCCCc-eeeeecccCc----cEEEEE----EcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 80 ILWEVTTGQ-PVRRWREHAS----KVTCVK----FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 80 ~iw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
++||+.+++ .+..+..|.. .+.+++ |+|+++++++++.||.|++||+++++
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------------- 201 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------------------- 201 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--------------------
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--------------------
Confidence 999999887 6777765554 889998 67899999999999999999987643
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECC---CCceEEEeC-CCceEEEEcccc------------cCCCCeEEE
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRKHIMSAC-GNNVKLWTAEED------------YGQEPIVDA 214 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~i~~~~~~~~------------~~~~~i~~~ 214 (341)
.. ....+...+.+++|+| ++..+++++ ++.+++|++... .+...|.++
T Consensus 202 -------------~~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 202 -------------LR---WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp -------------EE---EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE
T ss_pred -------------ee---eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE
Confidence 10 0112345689999999 788777776 588999998653 477899999
Q ss_pred EEccCCC-EEEEeecCCeEEEEecccc-------------------ceeeeecCcccceeEEEEEeCCCCCEEE-EecCC
Q psy17863 215 CFTRDCQ-CILTCSTDECLRLFDKATG-------------------ELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSD 273 (341)
Q Consensus 215 ~~~~~~~-~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d 273 (341)
+|+|+++ ++++++.||.|++||++++ +.+..+.+|...+..+ +|+|++++|+ +++.|
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL--DWSPDKRGLCVCSSFD 343 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE--EECSSSTTEEEEEETT
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE--EEcCCCCeEEEEecCC
Confidence 9999998 8999999999999998754 4567788899999888 8999999998 89999
Q ss_pred CcEEEEeeeCCCc
Q psy17863 274 GKIYKWQLVDSSQ 286 (341)
Q Consensus 274 g~i~iwd~~~~~~ 286 (341)
|.|++||+.+.+.
T Consensus 344 ~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 344 QTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEECCCccc
Confidence 9999999987654
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=262.28 Aligned_cols=268 Identities=14% Similarity=0.235 Sum_probs=202.7
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc-----------eeeeecccC------------ccEEEEEEcCCC-
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----------PVRRWREHA------------SKVTCVKFNEDS- 109 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 109 (341)
+.+.|++++|+|++++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998876 477888898 889999999988
Q ss_pred -cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE-------EEccCCcceeeeEeeecCceEEEEE
Q psy17863 110 -SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK-------WQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 110 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~-------~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
..|++++.|+.|++||+................+.+.....-..+.+ +... ... .......+...|.+++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE-ASP-RRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE-EEE-EEEECSCCSSCCCEEE
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee-ccc-eEEeccCCCcceEEEE
Confidence 79999999999999999764321000000000000000000000000 0000 000 0111223567799999
Q ss_pred ECCCCceEEEeCCCceEEEEccc-c--------------cCCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccce---
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEE-D--------------YGQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGEL--- 242 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~-~--------------~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--- 242 (341)
|+|++++++++.++.+++||+.. . .|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 99999999999889999999982 1 367889999999998 9999999999999999998886
Q ss_pred -eeeecCccc------------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeeeeccc----------
Q psy17863 243 -LEEYKGHKS------------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAV---------- 298 (341)
Q Consensus 243 -~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---------- 298 (341)
+..+.+|.. .+..+ +|+|++++|++++. +.|++||+++ ++++..+. .|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDV--KFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKLCSLYEN 339 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEE--EECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTHHHHHHT
T ss_pred eeeEeccCCCccccccccccCceEEEE--EECCCCCEEEEeeC-CeEEEEeCCCCccccceee--ccccccccccccccc
Confidence 788888876 77777 89999999999999 9999999987 88888887 55432
Q ss_pred -----eEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 299 -----VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 299 -----v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+..++|+|++++|++++ ||.|++|++.++.
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 33499999999999999 9999999998764
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-36 Score=252.85 Aligned_cols=251 Identities=13% Similarity=0.158 Sum_probs=204.8
Q ss_pred cCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCCceeeeec--ccCccEEEEEEcC-CCcEEEEec
Q psy17863 41 NPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNE-DSSVVISGS 116 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~ 116 (341)
+....+....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334556677888999999999999998 999999999999999999888777665 6999999999999 789999999
Q ss_pred CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CC
Q psy17863 117 QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 195 (341)
Q Consensus 117 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (341)
.|+.|++||+++.. +..+. ........+.+++++|+++++++++ ++
T Consensus 139 ~d~~i~iwd~~~~~-----------------------~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 139 IRGATTLRDFSGSV-----------------------IQVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp TTTEEEEEETTSCE-----------------------EEEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCc-----------------------eEEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 99999999987421 11100 0111235689999999999988877 48
Q ss_pred ceEEEEccccc------CCCCeEEEEEccCCC-EEEEeecCCeEEEEeccc----cceeeeecCcccceeEEEEEeCC-C
Q psy17863 196 NVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCSTDECLRLFDKAT----GELLEEYKGHKSGDFRIECCLDS-K 263 (341)
Q Consensus 196 ~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (341)
.+++||+.... |...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+ +|...+..+ +|+| +
T Consensus 186 ~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~ 262 (383)
T 3ei3_B 186 RLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA--YFNPTD 262 (383)
T ss_dssp EEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE--EECTTT
T ss_pred CEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE--EEcCCC
Confidence 99999985432 788999999999999 999999999999999998 5566666 588888888 8999 9
Q ss_pred CCEEEEecCCCcEEEEeeeCCCceEEEEeeeec-----------------cceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 264 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-----------------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+++|++++.|+.|++||+.+++....+. .|. ..+..++|+|++++ +++ |+.|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQII--IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEE--ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccc--cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 9999999999999999999988877776 332 34455777777776 667 9999999998
Q ss_pred cccCCc
Q psy17863 326 EDYGQA 331 (341)
Q Consensus 326 ~~~~~~ 331 (341)
++....
T Consensus 339 ~~~~~~ 344 (383)
T 3ei3_B 339 SGGLVH 344 (383)
T ss_dssp TCCEEE
T ss_pred CCceee
Confidence 765433
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.6e-36 Score=251.78 Aligned_cols=245 Identities=19% Similarity=0.276 Sum_probs=201.1
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCC-
Q psy17863 15 AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTG- 87 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~- 87 (341)
....++++|+...++ +++.||.|+||++.+. ..+..+.+|...|++++|+| ++++|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 445688888765444 5788999999998654 24556788999999999999 9999999999999999999987
Q ss_pred ------ceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 88 ------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 88 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------------------------------ 165 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA------------------------------ 165 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE------------------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC------------------------------
Confidence 6678888999999999999998 699999999999999987543
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
....+. ...|...|.+++|+|++++|++++.|+.|++||++++
T Consensus 166 ---~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 166 ---AVLTLG----------------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp ---EEEEEC----------------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred ---ccEEEe----------------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 111110 0113567889999999999999999999999999999
Q ss_pred ceeeee-cCcccc-eeEEEEEeCCCCCEEEEe---cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE-Ee
Q psy17863 241 ELLEEY-KGHKSG-DFRIECCLDSKDSQIFCG---SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM-SA 314 (341)
Q Consensus 241 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 314 (341)
+.+..+ .+|... +..+ +|+|++++|++| +.|+.|++||+.+++.........+...+.+++|+|++++|+ ++
T Consensus 209 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHA--VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp EEEEEEECSSCSSSCCEE--EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred ceeeeeccCCCCCcceEE--EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 998888 678765 5655 899999999999 899999999999877633333225677899999999999986 56
Q ss_pred C-CCcEEEEEccccc
Q psy17863 315 C-GNNVKLWTAEEDY 328 (341)
Q Consensus 315 ~-d~~i~vw~~~~~~ 328 (341)
+ |+.|++|++.++.
T Consensus 287 ~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 287 KGDSSIRYFEITSEA 301 (402)
T ss_dssp TTCSCEEEEEECSST
T ss_pred cCCCeEEEEEecCCC
Confidence 6 9999999998765
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.1e-37 Score=252.61 Aligned_cols=238 Identities=8% Similarity=0.006 Sum_probs=186.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEe-----------CCCeEEEEcCCCcceeeE----e-----cCcccceeEEEEecCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCG-----------SDKKIKLWNPYRNLLLKT----Y-----GGHAHEVNDATAACDS 67 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~-----------~dg~i~iw~~~~~~~~~~----~-----~~~~~~v~~~~~~~~~ 67 (341)
.|.+|...|.+++++ ++.+++|. .|+.+++|++........ . ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 466788888888765 55666653 477899998765432211 1 2344568899999999
Q ss_pred CEEEE--ecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 68 SQIAS--GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 68 ~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+++++ ++.|++|++||+++++++..+. |...|.+++|+|+++++++++.+ .+.+|+..++.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~--------------- 208 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS--------------- 208 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC---------------
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc---------------
Confidence 99765 4578999999999999988886 77889999999999999999855 45566554432
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-C----ceEEEEcccc-----------cCCC
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-N----NVKLWTAEED-----------YGQE 209 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~i~~~~~~~~-----------~~~~ 209 (341)
.........+...+.+++|+|+++.+++++. + .++.|+.... .+..
T Consensus 209 ------------------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 209 ------------------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp ------------------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ------------------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 1111112224566899999999999988763 2 4777876532 2678
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee-cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+|++++|+|+|++|++|+.|+.|++||+++++++..+ .+|...|+.+ +|+|||++|++|+.|++|+|||+...
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v--~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV--TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE--EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE--EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999999998875 7899999988 89999999999999999999999653
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=238.73 Aligned_cols=245 Identities=19% Similarity=0.214 Sum_probs=203.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
.+....+..|...|.+++|+|++++|++++.||.|++|++... +.+..+..|...|.++.| +++++++++.||.|
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 3567788899999999999999999999999999999997654 567788899999999999 57799999999999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCC-------CCcCeEEeecCCCceEEEeecc
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
++|| .++....+..|...+.+++|.| +++++++++.||.|++||.... ....+..+...+++.+++++.+
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 9999 6788888889999999999998 9999999999999999994431 2334555555555557778888
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
|.|++||+++.+.+..+.. +..++.+++|+|++ .+++++.||.
T Consensus 205 g~i~i~d~~~~~~~~~~~~------------------------------------~~~~i~~~~~~~~~-~l~~~~~dg~ 247 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEG------------------------------------HESFVYCIKLLPNG-DIVSCGEDRT 247 (313)
T ss_dssp SEEEEEETTTCCEEEEEEC------------------------------------CSSCEEEEEECTTS-CEEEEETTSE
T ss_pred CeEEEEECCchhhhhhhhc------------------------------------CCceEEEEEEecCC-CEEEEecCCE
Confidence 8888888776655444421 35678889999998 5889999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
|++||+++++.+..+..|...+..+ +++|+++ +++++.||.|++||+.+++......
T Consensus 248 v~iwd~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 248 VRIWSKENGSLKQVITLPAISIWSV--DCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEECTTTCCEEEEEECSSSCEEEE--EECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEECCCCceeEEEeccCceEEEE--EEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999999999999999999888888 8999997 6678999999999999887765554
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=235.87 Aligned_cols=241 Identities=17% Similarity=0.304 Sum_probs=195.7
Q ss_pred eeeeEE--eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 4 TCVQTI--DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 4 ~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++++.+ .+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+ ++..+++++.++.+++
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~ 133 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH 133 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEe
Confidence 455555 467788999999999999999999999999999999999999999998877655 5679999999999999
Q ss_pred EECCCC-ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc------------CeEEeecCC-Cc---e
Q psy17863 82 WEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH------------PIQCCLDSK-DS---Q 144 (341)
Q Consensus 82 w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~-~~---~ 144 (341)
|+.... ..+..+.+|...+..+.+.++++++++++.|+.|++||+++++.. .+......+ +. .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 998876 456677889999999999999999999999999999999875421 122222222 22 2
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
+++++.++.|++||........... +...+..+.|+|+++.++
T Consensus 214 ~~~~~~~~~i~lwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 214 TGGGTSDRHIRIWNVCSGACLSAVD-------------------------------------AHSQVCSILWSPHYKELI 256 (318)
T ss_dssp EEECTTTCEEEEEETTTCCEEEEEE-------------------------------------CSSCEEEEEEETTTTEEE
T ss_pred EEecCCCCEEEEEeccccccccccc-------------------------------------ceeeeeeeeecccccceE
Confidence 3456677788888876654433221 245577778888877776
Q ss_pred Eee--cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 225 TCS--TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 225 ~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
+++ .|+.|++||+++++++.++.+|...|.++ +|+|++++|++|+.||+|+|||+.+..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l--~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 644 79999999999999999999999999988 899999999999999999999987654
No 105
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.4e-35 Score=235.51 Aligned_cols=209 Identities=17% Similarity=0.240 Sum_probs=173.3
Q ss_pred eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC--CceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEE
Q psy17863 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMM 123 (341)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i 123 (341)
+..+.+|...|.+++|+|++++|++|+.|++|++||+.. .+.+..+.+|.++|.+++|++ ++++|++++.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 345778999999999999999999999999999999975 367788999999999999986 4889999999999999
Q ss_pred EEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 124 WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 124 wd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
||++++..... ..+
T Consensus 82 Wd~~~~~~~~~-------------------------------~~~----------------------------------- 95 (297)
T 2pm7_B 82 WKEENGRWSQI-------------------------------AVH----------------------------------- 95 (297)
T ss_dssp EEBSSSCBCCC-------------------------------EEE-----------------------------------
T ss_pred EEcCCCceEEE-------------------------------EEe-----------------------------------
Confidence 99875431000 000
Q ss_pred cccCCCCeEEEEEccC--CCEEEEeecCCeEEEEeccccc--eeeeecCcccceeEEEEEeCCC-------------CCE
Q psy17863 204 EDYGQEPIVDACFTRD--CQCILTCSTDECLRLFDKATGE--LLEEYKGHKSGDFRIECCLDSK-------------DSQ 266 (341)
Q Consensus 204 ~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 266 (341)
..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...+..+ +|+|+ +++
T Consensus 96 -~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 96 -AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA--SWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp -CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE--EECCCC------------CCE
T ss_pred -ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE--eecCCcccccccCCCCCCcce
Confidence 013456888888887 7899999999999999998763 245678899988888 77776 579
Q ss_pred EEEecCCCcEEEEeeeCCC----ceEEEEeeeeccceEEEEEcCCC---cEEEEeC-CCcEEEEEcccc
Q psy17863 267 IFCGSSDGKIYKWQLVDSS----QISTLIHSVGKAVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~vw~~~~~ 327 (341)
|++|+.|+.|++||+++++ ....+. +|...|.+++|+|++ .+|++++ |++|++|+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999999999999999876 344555 799999999999994 8999999 999999998764
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.2e-35 Score=248.90 Aligned_cols=252 Identities=20% Similarity=0.379 Sum_probs=195.7
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+++.++.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.++++++.||.|++|
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEE
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEE
Confidence 4567889999999999999 78899999999999999999999999999999999999997 4599999999999999
Q ss_pred ECCCCcee---eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeecc
Q psy17863 83 EVTTGQPV---RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 83 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 151 (341)
|+.+++.. ..+.+|...|.+++| +++++++++.||.|++||+++++. ..+.++.. .+..+++++.|
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~~d 315 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSD 315 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETT
T ss_pred eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEEEEeCC
Confidence 99988765 667889999999999 678999999999999999987642 22333333 45688899999
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
|.|++||+++++.+..+.. |...+.++++ +++++++|+.||.
T Consensus 316 g~i~iwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 316 NTIRLWDIECGACLRVLEG------------------------------------HEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp SCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CeEEEEECCCCCEEEEEeC------------------------------------CcCcEEEEEe--cCCEEEEEeCCCc
Confidence 9999999888765554432 3456777777 7788999999999
Q ss_pred EEEEeccccc---------eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 232 LRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 232 i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
|++||+.+++ .+..+.+|...+..+ ++ ++++|++|+.||.|++||+.+........ ...+..++
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~ 430 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP---PRSPSRTY 430 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE--EE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred EEEEECCCCCCccccccchheeeccCCCCCeEEE--Ee--CCCEEEEEeCCCEEEEEECCCCCCcccCC---CCCCccce
Confidence 9999998776 788899999999888 55 67899999999999999998876655543 33445555
Q ss_pred EEcC
Q psy17863 303 CSHP 306 (341)
Q Consensus 303 ~~~~ 306 (341)
.|.+
T Consensus 431 ~~~~ 434 (435)
T 1p22_A 431 TYIS 434 (435)
T ss_dssp ----
T ss_pred eeec
Confidence 5543
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=244.62 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=196.1
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC---------CCcee
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT---------TGQPV 90 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~~ 90 (341)
.+.+++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888886 567888899988 9999999999999765 44444
Q ss_pred eeec-ccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCCC---------cCeEEe-ecCCCceEEEeeccCeEEEE
Q psy17863 91 RRWR-EHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSH---------HPIQCC-LDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 91 ~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~g~i~~~ 157 (341)
..+. .|..+|.+++|+| +++++++++.||.|++||+++++. ..+.++ ..+++..+++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4443 5778999999999 999999999999999999987552 122233 33344566677777777777
Q ss_pred EccCCcce-eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 158 QLVDSSQI-STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 158 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
|+++++.. ..+.. .|..+|.+++|+|++.+|++++ ++.|++||
T Consensus 198 d~~~~~~~~~~~~~-----------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 198 NLSSPDQASSRFPV-----------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp ESSCTTSCCEECCC-----------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred ECCCCCCCccEEec-----------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 77776554 22211 1457899999999999999999 55999999
Q ss_pred ccccceeeeecC---cccceeEEEEEeCCCCCEEEEecC-CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC---CCc
Q psy17863 237 KATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRK 309 (341)
Q Consensus 237 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 309 (341)
+++++.+..+.. |...+....++|+|++++|++++. |+.+++|++.+....... .++..++|+| +.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFT 315 (343)
T ss_dssp TTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCC
T ss_pred cCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccc
Confidence 998877666554 333333223589999999999988 999999999776554333 4678888998 888
Q ss_pred EEEEeC-CCcEEEEEccc
Q psy17863 310 HIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~~ 326 (341)
.+++++ |+.+.++-...
T Consensus 316 ~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEEETTEEEEEEECS
T ss_pred eeEEEecCCceEEEEecC
Confidence 999999 99999886544
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=244.37 Aligned_cols=277 Identities=14% Similarity=0.214 Sum_probs=195.7
Q ss_pred eeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC---CCEEEEecCCCcEEEEECCC
Q psy17863 11 CKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 11 ~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~ 86 (341)
+|...|++++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||+++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 5999999999999 78899999999999999999999888887 7788999999984 44999999999999999999
Q ss_pred CceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCC------------------------CcCeEEee-cC
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRS------------------------HHPIQCCL-DS 140 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~------------------------~~~~~~~~-~~ 140 (341)
++.+..+..|...|.+++|+|+++ ++++++.||.|++||++... ...+..+. .+
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999988 58999999999999997543 22344443 34
Q ss_pred CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
.+..+++++.||.+++||+.+.+............ ....+........+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN-------------------------------SKKGLKFTVSCGCS 304 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC-------------------------------CSSCCCCEECCSSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceecccccccc-------------------------------ccccceeEEecCCC
Confidence 55588899999999999998876544332211100 01111112222334
Q ss_pred CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
..+++++.++.|++||+.+++.+..+.+|...+..+ +|+|++++|++++.||.|++||+.+++++.... ... ..
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~-~~- 378 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC--VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD--ETT-TK- 378 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE--EEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE--EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC--ceE-ec-
Confidence 557777889999999999999999999999999888 899999999999999999999999988776654 221 11
Q ss_pred EEEEcCC-CcEEEEeC-CCcEEEEEccc
Q psy17863 301 SLCSHPT-RKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~-~~~l~~~~-d~~i~vw~~~~ 326 (341)
..+.|. ...+.+.+ ++.+++|+.+.
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred -cccccccceeecccCccCceeecCCcc
Confidence 223332 33344455 99999998653
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.3e-33 Score=235.05 Aligned_cols=293 Identities=10% Similarity=0.074 Sum_probs=228.6
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCceeeeecccCccEEEEE
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 104 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 104 (341)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888999999999999999999888665 58999999999977 677789999999999999988887555 899999
Q ss_pred EcCCCcEEE-EecCCCeEEEEEecCCCC-------cCeEEeec-CCCceE-EEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 105 FNEDSSVVI-SGSQDNTVMMWDVKSRSH-------HPIQCCLD-SKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 105 ~~~~~~~l~-~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~~~~~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
|+|++++|+ +++.++.|++||+.+++. .....+.. +.+..+ ++++.++.|++||+.+++....+.. .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~ 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G 157 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C
Confidence 999999775 555679999999987542 22333333 444455 6788899999999998877666543 2
Q ss_pred ceEEEEEECCCCceEE-EeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEee---cCCeEEEEecccccee
Q psy17863 175 AVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS---TDECLRLFDKATGELL 243 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~ 243 (341)
..+..++++|+++.++ ++. ++.+++||+.... +...+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 3468999999998874 444 4789999987644 566789999999999999888 6899999999999988
Q ss_pred eeecCcccceeEEEEEeCCCCCEE-EEecCCCcEEEEeeeCCCceEEEEeeeeccceE---EEE------------EcCC
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN---SLC------------SHPT 307 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~------------~~~~ 307 (341)
..+..+.. +..+ +++|+++++ ++++.|+.|++||+.+++.+..+. .+..+.. .+. |+.+
T Consensus 238 ~~~~~~~~-~~~~--~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~fs~~ 312 (391)
T 1l0q_A 238 ARIPVGPD-PAGI--AVTPDGKKVYVALSFXNTVSVIDTATNTITATMA--VGKNPYASGQFIGSIPVQPVYPSADFKSN 312 (391)
T ss_dssp EEEECCSS-EEEE--EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEECCSSCEEECSSCCCCCBCCEEES
T ss_pred EEEecCCC-ccEE--EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE--CCcCCCccceeeecccccccccccccccc
Confidence 88887654 4444 899999877 677889999999999998888776 3332211 112 2221
Q ss_pred C----------cEEEEeC-CCcEEEEEccccc
Q psy17863 308 R----------KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 308 ~----------~~l~~~~-d~~i~vw~~~~~~ 328 (341)
. ..+...+ |...++|++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 313 ITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp CCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred cccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 1 3455556 8899999997654
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-35 Score=249.75 Aligned_cols=246 Identities=13% Similarity=0.169 Sum_probs=192.2
Q ss_pred eeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce--eeeecccCccEEEEEEcC-CCcEEEEecCCCeEE
Q psy17863 47 LLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVM 122 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 122 (341)
.......|...|++++|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++++|+| ++++|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3445567888999999999 567899999999999999987754 345568999999999998 789999999999999
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWT 201 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 201 (341)
+||+++.. +..+ .........+.+++++|+++++++++. +.|++||
T Consensus 191 iwd~~~~~-----------------------~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 191 LQDFKGNI-----------------------LRVF----------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237 (435)
T ss_dssp EEETTSCE-----------------------EEEE----------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred EeeccCCc-----------------------eeEE----------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence 99987532 0000 001112234677889999999988874 8999999
Q ss_pred ccccc------CCCCeEEEEEccCCC-EEEEeecCCeEEEEeccccceeee---ecCcccceeEEEEEeCCCCCEEEEec
Q psy17863 202 AEEDY------GQEPIVDACFTRDCQ-CILTCSTDECLRLFDKATGELLEE---YKGHKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 202 ~~~~~------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
++... |...|.+++|+|++. ++++++.|+.|++||+++.+.... ..+|...|..+ +|+|++++|++++
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~--~~spdg~~l~s~~ 315 (435)
T 4e54_B 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA--CFSPDGARLLTTD 315 (435)
T ss_dssp SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC--CBCTTSSEEEEEE
T ss_pred cCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccce--eECCCCCeeEEEc
Confidence 87543 778999999999876 678999999999999987765443 35788888887 8999999999999
Q ss_pred CCCcEEEEeeeCCCceEEEEeeeecc------ceEEEEEcCCCcEEEEeC-------------CCcEEEEEcccccC
Q psy17863 272 SDGKIYKWQLVDSSQISTLIHSVGKA------VVNSLCSHPTRKHIMSAC-------------GNNVKLWTAEEDYG 329 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-------------d~~i~vw~~~~~~~ 329 (341)
.||.|++||+.+++....+. .|.. .+....|+|++.+++++. ++.|++|+..++..
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLI--PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp SSSCEEEEESSSSSSEEEEC--CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred CCCEEEEEECCCCccceEEe--cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 99999999999998877765 3321 233456777776666653 34799999887643
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.1e-33 Score=223.67 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=181.3
Q ss_pred ceeeeEEeeeCC----cEEEEEEccCCC---EEEEEeCCCeEEEEcCCCc---ceeeEecCccccee-------------
Q psy17863 3 YTCVQTIDCKQG----AIRAVRFNVDGS---YCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVN------------- 59 (341)
Q Consensus 3 ~~~~~~l~~h~~----~v~~~~~~~~~~---~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~------------- 59 (341)
.+++.+|+...+ .+.++-|-..|- .+++++ ...|++|+..++ ++++++..|..+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 456667776554 355666655443 567777 568999999888 77888877775554
Q ss_pred ------------EEEEecC----CCEEEEecCCCcEEEEECCCCceeee-ecccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 60 ------------DATAACD----SSQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 60 ------------~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
.++++|| ++.+++++. .+.+|++.+++.+.. ..+|...|..++++|+|+.+.+..
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~------ 175 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF------ 175 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE------
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec------
Confidence 4455555 555555542 255566655555554 345666666666666555544211
Q ss_pred EEEecCCCCcCeEEee-cCCCceEEEeeccCeEEEEEccCCcceeeeEeee-cCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 123 MWDVKSRSHHPIQCCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
........+.... ...+..+++++.|++|++||+.+++.+..+..+. ....+.+++|+|+++.+++.....
T Consensus 176 ---~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~---- 248 (356)
T 2w18_A 176 ---LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC---- 248 (356)
T ss_dssp ---ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred ---cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC----
Confidence 0001111111111 2245689999999999999999999888886332 234567778888888776654210
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee-----cCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-----KGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
....+++|+.|++|++||..+++.+..+ .+|....... .+ ++.++++|+.|++
T Consensus 249 ------------------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~--sg~~lASgS~DgT 306 (356)
T 2w18_A 249 ------------------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV--KDHCAAAILTSGT 306 (356)
T ss_dssp ---------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE--ETTEEEEEETTSC
T ss_pred ------------------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc--CCCEEEEEcCCCc
Confidence 0113788999999999999999887665 3565543222 33 3778999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceE-EEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVN-SLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
|+|||+.+++++.++. +|...+. .++|+|||++|++|+ |++|+||++
T Consensus 307 IkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999998 7776554 689999999999999 999999985
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-34 Score=237.04 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=198.7
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc---eeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEE
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---PVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWD 125 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 125 (341)
...+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999998877 3455568999999999999999 999999999999999
Q ss_pred e-cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcc
Q psy17863 126 V-KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 203 (341)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 203 (341)
+ .++.. ..+....+...+.+++|+| +..+++++ ++.+++|++.
T Consensus 86 ~~~~~~~----------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 86 LIGSPSF----------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp SSSSSSE----------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred eccCCce----------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 8 65431 0111101445688999999 76666655 5889999987
Q ss_pred c---------cc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-cce--eeeecCcccceeEEEEEeCC-CC
Q psy17863 204 E---------DY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCLDS-KD 264 (341)
Q Consensus 204 ~---------~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~ 264 (341)
. .. +...+.+++|+|++ +++++.|+.|++||+++ +.. ......|...+..+ +++| ++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~ 206 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV--ALLPKEQ 206 (342)
T ss_dssp HHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE--EECSGGG
T ss_pred ccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE--EECCCCC
Confidence 6 33 67789999999988 99999999999999987 543 33445677777777 8999 99
Q ss_pred CEEEEecCCCcEEEEeeeCC------CceEEEEeeeecc---------ceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 265 SQIFCGSSDGKIYKWQLVDS------SQISTLIHSVGKA---------VVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+++++++.||.|++|++... +....+. .|.. .|.+++|+|++++|++++ ||.|++|++.++.
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR--CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE--CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeee--cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 99999999999999999887 7777777 5544 999999999999999999 9999999998765
Q ss_pred CCc
Q psy17863 329 GQA 331 (341)
Q Consensus 329 ~~~ 331 (341)
...
T Consensus 285 ~~~ 287 (342)
T 1yfq_A 285 KIK 287 (342)
T ss_dssp EEE
T ss_pred Hhh
Confidence 433
No 113
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.3e-32 Score=238.15 Aligned_cols=309 Identities=11% Similarity=0.100 Sum_probs=241.5
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC--CCCceeeeecccC
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHA 97 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~ 97 (341)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+||+++|++++.|+.|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889999999999999999999999999999984433 889999999999999999999999999 8888888887 45
Q ss_pred ccEEEEEEcC----CCcEEEEecC-CCeEEEEEecCCCCc-------------------CeEEee-cCCC-ceEEEeecc
Q psy17863 98 SKVTCVKFNE----DSSVVISGSQ-DNTVMMWDVKSRSHH-------------------PIQCCL-DSKD-SQIFCGSSD 151 (341)
Q Consensus 98 ~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~-------------------~~~~~~-~~~~-~~~~~~~~~ 151 (341)
..+..++|+| +++++++++. +++|.+||..+.+.. ....+. .+.+ ..+++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6679999999 9999999885 899999998765421 111222 2222 356677788
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------CCCCeEEEEEcc
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------GQEPIVDACFTR 218 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------~~~~i~~~~~~~ 218 (341)
++|.+||..+.+.+...... ....+..+.|+|++++++++. ++.|.+||..+.. |......+ ++|
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 99999999887655422222 344577899999999876654 4899999987643 22222333 467
Q ss_pred C-CCEEEEee-cCCeEEEEeccc-------cceeeeecCcccceeEEEEEeCCCCCEEEEec-------CCCcEEEEeee
Q psy17863 219 D-CQCILTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-------SDGKIYKWQLV 282 (341)
Q Consensus 219 ~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~ 282 (341)
+ +..++++. .|++|.+||..+ ++.++++.+|...+..+ .++|++++|++++ .+++|.+||+.
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v--~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--KTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE--EcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 7 66666665 579999999988 88999999988776666 8999999999987 27799999999
Q ss_pred CCCce-EEEEe------eeeccceEEEEEcCCCcEEEEe-----C-CCcEEEEEcccccCCccce
Q psy17863 283 DSSQI-STLIH------SVGKAVVNSLCSHPTRKHIMSA-----C-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 283 ~~~~~-~~~~~------~~~~~~v~~~~~~~~~~~l~~~-----~-d~~i~vw~~~~~~~~~~~~ 334 (341)
+++.. ..+.. ..+...+..+.|+|+|+.|+++ + |+.|.|||..+....+.+.
T Consensus 458 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 458 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99887 44421 1346789999999999998865 3 6899999999887666554
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.3e-33 Score=230.56 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=177.1
Q ss_pred EEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE-EEecC
Q psy17863 39 LWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQ 117 (341)
Q Consensus 39 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 117 (341)
+|++.+.+.+..+..|...|.+++|+||+++|++|+.++ +++|++++++....... ..+..+++.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566667777777889999999999999999999998776 78999987766554432 247778888877766 45666
Q ss_pred CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCce
Q psy17863 118 DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 197 (341)
Q Consensus 118 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (341)
|+.|++||+.+++ .+..+. ....+.++.++++. ++++.++.+
T Consensus 80 d~~v~iWd~~~~~---------------------------------~~~~~~---~~~~v~~v~~~~~~--~~~~~~~~i 121 (355)
T 3vu4_A 80 KEVVHIWDDVKKQ---------------------------------DVSRIK---VDAPVKDLFLSREF--IVVSYGDVI 121 (355)
T ss_dssp TTEEEEEETTTTE---------------------------------EEEEEE---CSSCEEEEEECSSE--EEEEETTEE
T ss_pred ccEEEEEECCCCc---------------------------------EEEEEE---CCCceEEEEEcCCE--EEEEEcCEE
Confidence 7788888776543 222222 22357778887654 444567888
Q ss_pred EEEEcccc-cC----CCCeEEEEEccCCCEEEE--eecCCeEEEEeccccc----------------eeeeecCccccee
Q psy17863 198 KLWTAEED-YG----QEPIVDACFTRDCQCILT--CSTDECLRLFDKATGE----------------LLEEYKGHKSGDF 254 (341)
Q Consensus 198 ~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~ 254 (341)
++|++... .. ..+...+++++ .++++ |+.||.|++||+.+++ .+..+.+|...|.
T Consensus 122 ~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp EEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred EEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 89988765 21 11344566777 55555 6899999999998765 2778899999999
Q ss_pred EEEEEeCCCCCEEEEecCCCc-EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 255 RIECCLDSKDSQIFCGSSDGK-IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++ +|+|++++|++|+.||+ |++||+.+++++..+....|...|.+++|+|++++|++++ |+.|++|++....
T Consensus 200 ~~--~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 200 MV--RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EE--EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EE--EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 88 89999999999999998 9999999999998887323889999999999999999999 9999999997653
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8e-34 Score=230.66 Aligned_cols=228 Identities=15% Similarity=0.207 Sum_probs=170.8
Q ss_pred eeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecC--CCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACD--SSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 78 (341)
++.++++|.++|++++|+| ++++|++|+.|++|++||+.++ +....+.+|...|.+++|+|+ +.+|++++.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 5678999999999999986 4899999999999999999876 356678899999999999997 789999999999
Q ss_pred EEEEECCCCce---eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 79 VILWEVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 79 i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
|++||+..+.. ...+.+|...|.+++|+|+... +.+ .+...+. .......+++++.|+.|+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~~--~~~~~~~-------~~~~~~~l~sgs~D~~v~ 192 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------GSL--IDHPSGQ-------KPNYIKRFASGGCDNLIK 192 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---------------CCSC-------CCCCCCBEECCBTTSBCC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCC-------ccc--ccccccc-------CccccceEEEecCCCeEE
Confidence 99999987632 4556789999999999997420 000 0000000 011234677777777788
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC----CEEEEeecCCe
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC----QCILTCSTDEC 231 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~ 231 (341)
+||++........... ..|...|.+++|+|++ ++|++++.|++
T Consensus 193 lWd~~~~~~~~~~~~l---------------------------------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 193 LWKEEEDGQWKEEQKL---------------------------------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp EEEECTTSCEEEEECC---------------------------------BCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred EEEeCCCCccceeeec---------------------------------ccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 8877543211111000 1145678888888876 78999999999
Q ss_pred EEEEeccccc----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 232 LRLFDKATGE----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 232 i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
|++|++.+.. ....+..|...+..+ +|+|++++|++++.||.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v--~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHV--SWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEE--EECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEE--EEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999987631 234456678888877 8999999999999999999999753
No 116
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=229.67 Aligned_cols=215 Identities=16% Similarity=0.230 Sum_probs=176.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecC--CCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACD--SSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 76 (341)
.++++.+.+|.+.|++++|+|+ +++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.|
T Consensus 45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 3567789999999999999987 9999999999999999999886 77788889999999999999 9999999999
Q ss_pred CcEEEEECCCCc--eeeeecccCccEEEEEEcC-------------CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 KSVILWEVTTGQ--PVRRWREHASKVTCVKFNE-------------DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 g~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
+.|++||+.++. ....+..|...|.+++|+| ++.++++++.|+.|++||++....
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------- 194 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---------- 194 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT----------
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc----------
Confidence 999999998874 3445678999999999999 578888888888888888765431
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC--
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-- 219 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-- 219 (341)
....... -..|..+|.+++|+|+
T Consensus 195 -----------------------~~~~~~~--------------------------------~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 195 -----------------------TYVLEST--------------------------------LEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp -----------------------EEEEEEE--------------------------------ECCCSSCEEEEEECCCCS
T ss_pred -----------------------ceeeEEE--------------------------------EecccCcEeEEEECCCCC
Confidence 1000000 0113567888999999
Q ss_pred -CCEEEEeecCCeEEEEeccccc-----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 220 -CQCILTCSTDECLRLFDKATGE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 220 -~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+++|++++.||.|++||++++. .+.....|...+..+ +|+|++++|++++.||.|++|++...
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE--EECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE--EEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8999999999999999998764 222334477777777 89999999999999999999999844
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-32 Score=226.44 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=188.2
Q ss_pred eeeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc---------ceeeEecCcccceeEEEEecC--CCEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN---------LLLKTYGGHAHEVNDATAACD--SSQI 70 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 70 (341)
++...+.+|...|++++|+| ++++|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 57788899999999999999 6999999999999999999876 557788899999999999999 9999
Q ss_pred EEecCCCcEEEEECCCCceeeeec-------------ccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCCcCe
Q psy17863 71 ASGASDKSVILWEVTTGQPVRRWR-------------EHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPI 134 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~ 134 (341)
++++.||.|++||+.+++.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+.....
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---- 203 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---- 203 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----
Confidence 999999999999999887665443 57788999999997 8899999988888666655432
Q ss_pred EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC----ceEEEeC-CCceEEEEcccccC--
Q psy17863 135 QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR----KHIMSAC-GNNVKLWTAEEDYG-- 207 (341)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~~~~~~~~-- 207 (341)
.........+...+.+++|+|++ +++++++ ++.|++||+.....
T Consensus 204 -----------------------------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 254 (351)
T 3f3f_A 204 -----------------------------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254 (351)
T ss_dssp -----------------------------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---
T ss_pred -----------------------------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence 11111112245678999999998 6676665 58899999887531
Q ss_pred -----CCCeEEEEEccCCCEEE----EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 208 -----QEPIVDACFTRDCQCIL----TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 208 -----~~~i~~~~~~~~~~~l~----~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.........++....+. .+.....+.+|+....+.+..+.+|...+..+ +|+|++++|++++.||.|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV--SWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEECTTSSCEEEE--EECSSSCCEEEEETTSCEEE
T ss_pred ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE--EEcCCCCEEEEecCCCcEEE
Confidence 11222222333333222 23345567778877888899999999999888 89999999999999999999
Q ss_pred EeeeCCCceEEEE
Q psy17863 279 WQLVDSSQISTLI 291 (341)
Q Consensus 279 wd~~~~~~~~~~~ 291 (341)
|++.+++.+..+.
T Consensus 333 w~~~~~~~~~~~~ 345 (351)
T 3f3f_A 333 WKATYSNEFKCMS 345 (351)
T ss_dssp EEECTTSCEEEEE
T ss_pred EecCcCcchhhee
Confidence 9999988776665
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-34 Score=234.14 Aligned_cols=234 Identities=8% Similarity=0.084 Sum_probs=191.1
Q ss_pred EEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 62 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
.+.++++++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 344578899999999999999999999888776 466788888887 99999999999999763
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC--CCceEEEeC-CCceEEEEccccc--------CCCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP--TRKHIMSAC-GNNVKLWTAEEDY--------GQEP 210 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~i~~~~~~~~~--------~~~~ 210 (341)
.+.+|+..+.+.+...... +...+.+++++| +++++++++ ++.+++||+.... +...
T Consensus 105 -----------~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 105 -----------QITILDSKTNKVLREIEVD-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp -----------EEEEEETTTCCEEEEEECC-CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred -----------ceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 5778888887766555432 345799999999 999998766 6899999987643 4457
Q ss_pred eEEEEEccCCCEEEEeecCCeEEEEecccccee-eeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceE
Q psy17863 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELL-EEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (341)
+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..++..+ +|+|++.+|++++ |+.|++||+++++.+.
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l--~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV--KFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE--EECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE--EEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 999999999999999999999999999999887 78888 99999888 8999999999999 5599999999987765
Q ss_pred EEEe-eeeccce--EEEEEcCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 289 TLIH-SVGKAVV--NSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 289 ~~~~-~~~~~~v--~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
.+.. ..|...+ .+++|+|++++|++++ |+.|++|++++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 5441 0133333 4699999999999965 8999999987654
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=226.33 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=194.6
Q ss_pred EEEcCCCcceeeEecCcccceeEEEEecC---CCEEEEecCCCcEEEEECCC-Ccee-eeecccCccEEEEEEcCCCcEE
Q psy17863 38 KLWNPYRNLLLKTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVTT-GQPV-RRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l 112 (341)
..|+....+.+..+.+|.+.|++++|+|+ +++|++++.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 34556667778888999999999999999 59999999999999999987 5554 7788899999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE--CCCCceEE
Q psy17863 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIM 190 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 190 (341)
++++.||.|++||+++++. .. ...+...+.+++| +|++.+++
T Consensus 102 ~s~~~dg~v~iwd~~~~~~---------------------------------~~---~~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQA---------------------------------IQ---IAQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp EEEETTSEEEEEETTTTEE---------------------------------EE---EEECSSCEEEEEEEECSSCEEEE
T ss_pred EEEcCCCcEEEEEcCCCCc---------------------------------ee---eccccCceEEEEEEeCCCCCEEE
Confidence 9999999999999876430 00 1124566899999 88988777
Q ss_pred EeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee--cCcccceeEEEEEeC
Q psy17863 191 SAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY--KGHKSGDFRIECCLD 261 (341)
Q Consensus 191 ~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (341)
+++ ++.+++||+.... ....+.++.+. ...+++++.++.+++|+++........ ..+......+.+...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred EccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 766 6899999987654 33445555555 457888999999999999866432222 122333444433433
Q ss_pred CCC--CEEEEecCCCcEEEEeeeCC---CceEEEEeeeecc------------ceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 262 SKD--SQIFCGSSDGKIYKWQLVDS---SQISTLIHSVGKA------------VVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 262 ~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
+.. ..+++++.||.|++|++... +.+..+. .|.. +|++++|+|++++|++++ ||.|++|+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK--CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE--CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeee--eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 332 23999999999999999887 4566666 5554 799999999999999999 99999999
Q ss_pred cccccCC
Q psy17863 324 AEEDYGQ 330 (341)
Q Consensus 324 ~~~~~~~ 330 (341)
+.++...
T Consensus 302 ~~~~~~~ 308 (368)
T 3mmy_A 302 KDARTKL 308 (368)
T ss_dssp TTTTEEE
T ss_pred CCCCcEE
Confidence 9876443
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=236.52 Aligned_cols=248 Identities=10% Similarity=0.067 Sum_probs=196.8
Q ss_pred CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--
Q psy17863 53 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-- 130 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 130 (341)
.....|.+++|+|||+++|+++.|++|+ |...+ +.+++|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~ 80 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL 80 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe
Confidence 4557899999999999999999999999 65444 4457899999999999998 56777777654221
Q ss_pred ----CcCeEEe-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec---CceEEEEEECCCCceEEEeC-CCceEEEE
Q psy17863 131 ----HHPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG---KAVVNSLCSHPTRKHIMSAC-GNNVKLWT 201 (341)
Q Consensus 131 ----~~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 201 (341)
...+..+ ..+++..+++++.||.+++||... .+..+. +.. ...+.+++|+|+|+++++++ ++.|++|+
T Consensus 81 ~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 2334444 445556799999999999999544 333332 111 23599999999999999988 59999999
Q ss_pred ccccc------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce---eeee-cCcccceeEEEEE
Q psy17863 202 AEEDY------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL---LEEY-KGHKSGDFRIECC 259 (341)
Q Consensus 202 ~~~~~------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~ 259 (341)
+..+. |...|.+++|+|+| +++++.|+.+++||+..++. .+++ .+|...|..+ +
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv--a 233 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL--K 233 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE--E
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE--E
Confidence 77542 34689999999999 88899999999999987763 3456 4788888888 6
Q ss_pred eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE--cCCCcEEEEeC-CCcEEEEEcc
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
|+ ++.||+++ +++|++||+.+++...... +|.+.|..++| +|++..|++++ ||+ ++|..+
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66 57899887 6999999988776644433 69999999999 99999999999 999 999976
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6.4e-31 Score=220.22 Aligned_cols=299 Identities=13% Similarity=0.110 Sum_probs=226.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~ 80 (341)
.++++.+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++ ++.++.|+
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence 35667777665 48999999999977 677789999999999999988887555 8999999999998754 55679999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEE-EEecCCCeEEEEEecCCCC-------cCeEEe-ecCCCceE-EEeec
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSH-------HPIQCC-LDSKDSQI-FCGSS 150 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~~~~-~~~~~ 150 (341)
+||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++. .....+ ..+.+..+ ++++.
T Consensus 100 v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 9999999988887754 568999999999977 6888899999999987542 122333 34444455 57788
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC----CCceEEEEccccc------CCCCeEEEEEccCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEEDY------GQEPIVDACFTRDC 220 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~------~~~~i~~~~~~~~~ 220 (341)
++.|++||+++.+....+. ....+..++++|+++.++++. ++.+++||+.... ....+.+++|+|++
T Consensus 179 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 255 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG 255 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred CCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCC
Confidence 9999999999887665554 345688999999999888774 5899999987643 34567899999999
Q ss_pred CEE-EEeecCCeEEEEeccccceeeeecCccccee---EEE----------EEeCCCC----------CEEEEecCCCcE
Q psy17863 221 QCI-LTCSTDECLRLFDKATGELLEEYKGHKSGDF---RIE----------CCLDSKD----------SQIFCGSSDGKI 276 (341)
Q Consensus 221 ~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~----------~~l~~~~~dg~i 276 (341)
+++ ++++.|+.|++||+.+++.+..+..+..+.. .+. ..|+.+. ..+...+.|...
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 977 5668899999999999998888876654421 010 0111111 345666778899
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
++|++.++... .+..+ ...|+++|.|.++..
T Consensus 336 ~~W~~~~g~~~------~~~~~--~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 336 WKWDFGDGSSS------KKQNP--THTYSETGIYTVRLT 366 (391)
T ss_dssp EEEECSSSCEE------CSSSC--EECCSSCEEEEEEEE
T ss_pred EEEECCCCccc------CcCCC--eEEeCCCceEEEEEE
Confidence 99999877531 22222 357899998877553
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.5e-33 Score=218.41 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=156.3
Q ss_pred cEEEEEEccC----CCEEEEEeC--------------------CCeEEEEcC-CCcceeeEecCcccceeEEEEec---C
Q psy17863 15 AIRAVRFNVD----GSYCLTCGS--------------------DKKIKLWNP-YRNLLLKTYGGHAHEVNDATAAC---D 66 (341)
Q Consensus 15 ~v~~~~~~~~----~~~l~t~~~--------------------dg~i~iw~~-~~~~~~~~~~~~~~~v~~~~~~~---~ 66 (341)
.|++++|+|| ++++++++. |+.|++|++ .+++.+..+..|...++.++|+| +
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5667777778 777776553 888999998 45777888888999999999999 7
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccC---ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCc
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHA---SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDS 143 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 143 (341)
+.+|++++.|++|+|||+.++++++++.+|. ..+.+++|+|++.++++++.+.. +|+
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~------------------ 252 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES------------------ 252 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------------
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce------------------
Confidence 7999999999999999999999999998654 46778899999999988876533 243
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
+++|+.|+++++||..+++.+..+. +++ |++. ...+.+. +.++.++
T Consensus 253 -laSGs~D~tIklWd~~tgk~l~v~~----------~~~-p~Gh--------------------~~~~lsg--~~sg~~l 298 (356)
T 2w18_A 253 -ESLRSPVFQLIVINPKTTLSVGVML----------YCL-PPGQ--------------------AGRFLEG--DVKDHCA 298 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEE----------ECC-CTTC--------------------CCCEEEE--EEETTEE
T ss_pred -eeccCCCcEEEEEECCCCEEEEEEE----------eec-cCCC--------------------cceeEcc--ccCCCEE
Confidence 5677889999999998876554321 111 2221 1122222 2337789
Q ss_pred EEeecCCeEEEEeccccceeeeecCccccee-EEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDF-RIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
++++.|++|++||+.+++++.++.+|...+. .+ +|+|+|++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v--afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV--KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEE--EECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE--EECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999999999987655 35 89999999999999999999996
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=227.38 Aligned_cols=259 Identities=13% Similarity=0.118 Sum_probs=196.2
Q ss_pred EeeeCCcEEEEEEccCCCEE-EEEeCCCeEEEEcCC--CcceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYC-LTCGSDKKIKLWNPY--RNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
..+|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.+|.+++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45678899999999999996 899999999999998 888888876 5678899999999999999999999999999
Q ss_pred CCCCceee----eecccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCCCceEEE
Q psy17863 84 VTTGQPVR----RWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFC 147 (341)
Q Consensus 84 ~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~ 147 (341)
+.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||++++.. ..+..+.+..+..+++
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s 257 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLS 257 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEE
Confidence 98887554 77889999999999999 99999999999999999986542 2334444446779999
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEEC---CCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH---PTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
++.|+.|++||+.+++.+..+...... ..+.+. +...+. ..........+..++|+|++++++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLI---KPYLNDQHLAPPRFQ-----------NENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHH---GGGCCTTSBC---------------------CBCCCEEEEEECSSSSEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhh---hhhhhhccccccccc-----------ccccccceEEEEEEEEeCCCCEEE
Confidence 999999999999998877666432110 000000 000000 000012346788999999999999
Q ss_pred Eee-cCCeEEEEec--ccc---ceeeeecCcccceeEEEEEeCCCCCEEEEecC------CCcEEEEeeeCC
Q psy17863 225 TCS-TDECLRLFDK--ATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDS 284 (341)
Q Consensus 225 ~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 284 (341)
+++ .++.|++|++ .++ +.+..+..| ..+..+ +++|++.++++++. +..|.+|.+...
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~--~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL--SAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE--EEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE--EecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 998 8999999999 555 667778877 666666 88886544444443 556899987654
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=246.31 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=176.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecC--CCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACD--SSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 76 (341)
.+++.++.+|.++|++++|+|+ +++|++|+.||.|++||+.+++ ....+..|...|++++|+|+ ++++++++.|
T Consensus 43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 3567789999999999999988 9999999999999999998886 67788899999999999999 9999999999
Q ss_pred CcEEEEECCCCc--eeeeecccCccEEEEEEcC-------------CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 KSVILWEVTTGQ--PVRRWREHASKVTCVKFNE-------------DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 g~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
|.|++||+.++. ....+..|...|.+++|+| ++..+++++.||.|++||++++.
T Consensus 123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~----------- 191 (753)
T 3jro_A 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------- 191 (753)
T ss_dssp SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----------
T ss_pred CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----------
Confidence 999999998873 3455678999999999999 47777888878877777776542
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC--
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-- 219 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-- 219 (341)
........ -..|..+|.+++|+|+
T Consensus 192 ----------------------~~~~~~~~--------------------------------~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 192 ----------------------QTYVLEST--------------------------------LEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp ----------------------TEEEEEEE--------------------------------ECCCSSCEEEEEECCCCS
T ss_pred ----------------------ccceeeee--------------------------------ecCCCCcEEEEEeccCCC
Confidence 11000000 0114567889999999
Q ss_pred -CCEEEEeecCCeEEEEeccccc-----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 220 -CQCILTCSTDECLRLFDKATGE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 220 -~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
++++++++.||.|++||+.+++ .......|...+..+ +|+|+++++++|+.||.|++|++..
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l--~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCE--EECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEE--EEcCCCCEEEEEcCCCEEEEEecCC
Confidence 8999999999999999998764 334445677888877 8999999999999999999999874
No 125
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=2.4e-30 Score=234.09 Aligned_cols=306 Identities=10% Similarity=0.037 Sum_probs=231.1
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----eEEEEcCCCcceeeEecCccc------------------------ceeEEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGS-DK-----KIKLWNPYRNLLLKTYGGHAH------------------------EVNDAT 62 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 62 (341)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999999887776654432 388999
Q ss_pred EecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-------
Q psy17863 63 AACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP------- 133 (341)
Q Consensus 63 ~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------- 133 (341)
|+|||++|++++. +.|.+||+.+++ ....+..|...+..++|+|||++|+.++ ++.|.+||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 899999998873 4556677888899999999999999887 5699999987753211
Q ss_pred ------------------eEEeecCCCceEEEeeccC---------------------------------eEEEEEccC-
Q psy17863 134 ------------------IQCCLDSKDSQIFCGSSDG---------------------------------KIYKWQLVD- 161 (341)
Q Consensus 134 ------------------~~~~~~~~~~~~~~~~~~g---------------------------------~i~~~d~~~- 161 (341)
......+++..++.++.++ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 1233445556788877665 788999887
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC------CCceEEEEccccc-------CC-C---CeEEEEEccCCCEEE
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC------GNNVKLWTAEEDY-------GQ-E---PIVDACFTRDCQCIL 224 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-------~~-~---~i~~~~~~~~~~~l~ 224 (341)
++.........+...+..++| |+++.++... +..|.+||..+.. +. . .+..++|+|||++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 665433322234567899999 9999988654 2568899887643 11 1 346889999999999
Q ss_pred EeecCCeEEEEecc-ccceeeeecCcccceeEEEEEeCCCCCEEE-EecCCC--cEEEEeeeC-CCceEEEEeeeeccce
Q psy17863 225 TCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDG--KIYKWQLVD-SSQISTLIHSVGKAVV 299 (341)
Q Consensus 225 ~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~v 299 (341)
+++.++.+++|.+. +++ ...+..+...+..+ ..|+|+++.|+ +++.++ .+++|++.. ++....+. . ...+
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~--~-~~~~ 427 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL-LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS--K-APGM 427 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEE-EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC--C-SCSE
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeE-eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc--c-CCCc
Confidence 99999987787765 344 67777776666544 14899998775 455555 899999875 55566665 3 5678
Q ss_pred EEEEEcCCCcEEEEeC-C----CcEEEEEccc
Q psy17863 300 NSLCSHPTRKHIMSAC-G----NNVKLWTAEE 326 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d----~~i~vw~~~~ 326 (341)
..++|+||+++|+... + ..+.+|+..+
T Consensus 428 ~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 428 HSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 8999999999988765 3 4688888754
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-30 Score=221.29 Aligned_cols=212 Identities=22% Similarity=0.383 Sum_probs=177.3
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcce-------eeEecCcccceeEEEEec-CCCEEEEe
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLL-------LKTYGGHAHEVNDATAAC-DSSQIASG 73 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~ 73 (341)
.+++.++.+|...|.+++|+|+++ +|++|+.||.|++|++.++.. ...+..|...|.+++|+| ++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 467788999999999999999998 999999999999999987322 456778999999999999 77899999
Q ss_pred cCCCcEEEEECCCC---ceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 74 ASDKSVILWEVTTG---QPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 74 ~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+.||.|++||++++ +.+..+..|...|++++|+|++. ++++++.||.|++||++....
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------------ 312 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------------ 312 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------------
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------------
Confidence 99999999999987 56777888999999999999887 688999999999999876331
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 228 (341)
.+..+.. |...|.+++|+|+++ +|++++.
T Consensus 313 --------------~~~~~~~------------------------------------h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 313 --------------KLHSFES------------------------------------HKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp --------------CSEEEEC------------------------------------CSSCEEEEEECSSCTTEEEEEET
T ss_pred --------------CeEEeec------------------------------------CCCCEEEEEECCCCCCEEEEEeC
Confidence 1111111 245677888888874 6889999
Q ss_pred CCeEEEEeccc--------------cceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCC
Q psy17863 229 DECLRLFDKAT--------------GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 229 d~~i~i~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 284 (341)
|+.|++||+.. .+.+..+.+|...+..+ +|+|+++ ++++++.||.|++|++...
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF--SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE--EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE--EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999986 35677778898888887 8999999 8999999999999998654
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.3e-29 Score=215.23 Aligned_cols=276 Identities=13% Similarity=0.169 Sum_probs=212.5
Q ss_pred eCCcEEEEE---EccCCCEEEEEe--------------CCC--eEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEE
Q psy17863 12 KQGAIRAVR---FNVDGSYCLTCG--------------SDK--KIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQI 70 (341)
Q Consensus 12 h~~~v~~~~---~~~~~~~l~t~~--------------~dg--~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 70 (341)
....+..++ |+|+++.++..+ .++ .|..+|..++ +.+..+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345678888 899887666432 223 5555565444 556666644 456699999988888
Q ss_pred EEecCCCcEEEEECCCCceee-----eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 71 ASGASDKSVILWEVTTGQPVR-----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||+++++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--------------- 202 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--------------- 202 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---------------
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---------------
Confidence 888889999999999998877 456788999999999999999999999999999887543
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------CCCCeEEEEEc
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------GQEPIVDACFT 217 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------~~~~i~~~~~~ 217 (341)
....+. .+...+.+++++|+++.++++. ++.+++||+.... ....+..++|+
T Consensus 203 ------------------~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 262 (433)
T 3bws_A 203 ------------------YKATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLS 262 (433)
T ss_dssp ------------------EEEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEEC
T ss_pred ------------------EEEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEc
Confidence 111111 1344588999999998875443 5899999987543 44568999999
Q ss_pred cCCCEEEEee--------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeCCCceE
Q psy17863 218 RDCQCILTCS--------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQIS 288 (341)
Q Consensus 218 ~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~ 288 (341)
|+++++++++ .|+.|++||+.+++.+..+. +...+..+ +++|+++. +++++.|+.|++||+.+++.+.
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~--~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHI--VSGNTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEE--EECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceE--EECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 9999999888 48899999999888776653 44455555 89999975 4667899999999999888777
Q ss_pred EEEeeeeccceEEEEEcCCCcEEEEeC-C---------------CcEEEEEcccccC
Q psy17863 289 TLIHSVGKAVVNSLCSHPTRKHIMSAC-G---------------NNVKLWTAEEDYG 329 (341)
Q Consensus 289 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------~~i~vw~~~~~~~ 329 (341)
.+. +...+.+++|+|++++|++++ + |.|++|++.++..
T Consensus 340 ~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 340 SIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred Eec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 765 567899999999999888876 3 4899999977543
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.8e-30 Score=240.16 Aligned_cols=314 Identities=11% Similarity=0.068 Sum_probs=239.3
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCC------CeEEEEcCCCcceeeEecCcccce-------eEEEEecCCCEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSD------KKIKLWNPYRNLLLKTYGGHAHEV-------NDATAACDSSQIA 71 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~ 71 (341)
..+.+..|.+.+.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ ..++|+|||+.++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 456788899999999999999999987643 479999988776 56788888888 9999999999777
Q ss_pred EecCC------CcEEEEECCCCceee-------------------------------------------------eeccc
Q psy17863 72 SGASD------KSVILWEVTTGQPVR-------------------------------------------------RWREH 96 (341)
Q Consensus 72 ~~~~d------g~i~iw~~~~~~~~~-------------------------------------------------~~~~~ 96 (341)
+++.+ ..|.+|++.+++... .+..|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77654 357788876554321 12345
Q ss_pred CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--C------cCe-EEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--H------HPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~------~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
...+.++.|+++ .++++++.++.+.+|.+.... . ... .....+++..++.+ .++.|.+|++.. ..+..
T Consensus 203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~~ 279 (1045)
T 1k32_A 203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKIEK 279 (1045)
T ss_dssp SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCEEE
T ss_pred CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEeee
Confidence 667788889887 677788888999999876421 1 111 12233344456555 689999999843 33332
Q ss_pred eEeee---------cCceEEEEEEC-CCCceEEEeCCCceEEEEccccc------CCC-CeEEEEEccCCCEEEEeecCC
Q psy17863 168 LIHSV---------GKAVVNSLCSH-PTRKHIMSACGNNVKLWTAEEDY------GQE-PIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 168 ~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------~~~-~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+.... +...+..++|+ |+++.++....+.+.+|+..... +.. .+..++|+ +|+.++.++.++
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~ 358 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG 358 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC
Confidence 22210 12357899999 99999999889999999986543 344 78899999 999999998888
Q ss_pred eEE-EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 231 CLR-LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 231 ~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.+. +||+.+++.. .+.+|...+..+ +|+|+|++|++++.++.|++||+.+++....+. .|...+.+++|+|||+
T Consensus 359 ~l~~~~d~~~~~~~-~l~~~~~~~~~~--~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 359 DFLGIYDYRTGKAE-KFEENLGNVFAM--GVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSR 433 (1045)
T ss_dssp EEEEEEETTTCCEE-ECCCCCCSEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSC
T ss_pred ceEEEEECCCCCce-EecCCccceeee--EECCCCCEEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCC
Confidence 898 9998876654 344676666666 899999999999999999999999998877766 6888899999999999
Q ss_pred EEEEeC-CC----------cEEEEEccccc
Q psy17863 310 HIMSAC-GN----------NVKLWTAEEDY 328 (341)
Q Consensus 310 ~l~~~~-d~----------~i~vw~~~~~~ 328 (341)
+|++++ ++ .|++|++.++.
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999887 54 89999998654
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3e-31 Score=221.90 Aligned_cols=224 Identities=9% Similarity=0.089 Sum_probs=155.2
Q ss_pred eeeEEeeeCCcEEEEEEcc--------CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecC
Q psy17863 5 CVQTIDCKQGAIRAVRFNV--------DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGAS 75 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~--------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 75 (341)
.+..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++.++..+..|...|.+++|+|++. +|++++.
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 3456789999999999998 889999999999999999988888888888999999999999874 7999999
Q ss_pred CCcEEEEECCCCceeeee-------------------------cccCccEEEEEEc-CCCcEEEEecCCCeEEEEEecCC
Q psy17863 76 DKSVILWEVTTGQPVRRW-------------------------REHASKVTCVKFN-EDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~-------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
||+|++||+.+++..... .+|...+.++.|+ ++++.+++++.|+.+++||+...
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 999999999887644332 2455566666665 56777777777777777776543
Q ss_pred CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC
Q psy17863 130 SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE 209 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (341)
+ ....+.. +...+..+.+.|+.+.+.. ..
T Consensus 288 ~---------------------------------~~~~l~~--~~~~~~~~~~~~~~~~~~~----------------~~ 316 (393)
T 4gq1_A 288 N---------------------------------DYNEISD--STMKLGPKNLLPNVQGISL----------------FP 316 (393)
T ss_dssp ---------------------------------------------------CCSCSEEEECS----------------SC
T ss_pred C---------------------------------CCceEee--ecCccccEEEccccccccc----------------cC
Confidence 3 2111111 1112333333333322211 11
Q ss_pred CeEEEEEcc--CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 210 PIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 210 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
......++| ++.++++|+.||.|++||..+++....+..|..+|..+ +|+|+|++||+++.+| +.+|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv--afspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF--CWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE--EECTTSSEEEEEESSE-EEEEEEG
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE--EEcCCCCEEEEEeCCC-eEEEEEe
Confidence 112223333 45567788899999999999999988888898888887 9999999999998766 6666653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=5.1e-30 Score=215.64 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=216.5
Q ss_pred CCcEEEEEEccCCC-EEEEEe----CCC----eEEEEcC--CCccee--eEecCcccceeEEEEec--------------
Q psy17863 13 QGAIRAVRFNVDGS-YCLTCG----SDK----KIKLWNP--YRNLLL--KTYGGHAHEVNDATAAC-------------- 65 (341)
Q Consensus 13 ~~~v~~~~~~~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 65 (341)
...+...+|++.|. ++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888775 565776 467 8999999 888877 45888888888777765
Q ss_pred CCCEEEEecCC------CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC---eEEEEEecCCCC-----
Q psy17863 66 DSSQIASGASD------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSH----- 131 (341)
Q Consensus 66 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~----- 131 (341)
.+..++.++.+ +.|++||++ +...+.+..|...+.+++|+|+++.|++++.++ .|++||+++++.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence 15566665543 799999997 455677788999999999999999999999875 999999987653
Q ss_pred --cCeEEeecCCC-ceEE-EeeccC--eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--C--ceEEEE
Q psy17863 132 --HPIQCCLDSKD-SQIF-CGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--N--NVKLWT 201 (341)
Q Consensus 132 --~~~~~~~~~~~-~~~~-~~~~~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~i~~~~ 201 (341)
..+....++++ ..++ +++.++ .|++||+.+++.. .+. .+...+.+++|+|+++.++.+++ + .+.+|+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc--CCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 22333444444 4565 555555 4999999886642 222 23456899999999998887764 3 577778
Q ss_pred ccccc------CCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 202 AEEDY------GQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 202 ~~~~~------~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
..... +...+..++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+..+ +|+|+|++|++++.
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~--~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETP--SLAPNGTMVIYSSS 373 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEE--EECTTSSEEEEEEE
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCe--EEcCCCCEEEEEEc
Confidence 76543 44678899999999999988764 58999999988763 455454 55555 89999999998887
Q ss_pred CC---cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 273 DG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 273 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
++ .|++||+. ++....+. .|.+.|.+++|+|...
T Consensus 374 ~~~~~~l~~~d~~-g~~~~~l~--~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 QGMGSVLNLVSTD-GRFKARLP--ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTEEEEEEEETT-SCCEEECC--CSSSEEEEEEECCCCC
T ss_pred CCCccEEEEEECC-CCcEEEee--CCCCCCcCCccccccc
Confidence 76 79999975 66677777 7889999999999754
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.7e-27 Score=206.18 Aligned_cols=284 Identities=10% Similarity=0.096 Sum_probs=215.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC--CCcceeeEecCcccceeEEEEec----CCCEEEEecC-
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAAC----DSSQIASGAS- 75 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~- 75 (341)
.+++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+.++. +...+..++|+| |++++++++.
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 356777774433 889999999999999999999999999 8888888888 455679999999 9999999885
Q ss_pred CCcEEEEECCCCceeeeecc----------cC-ccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcC----------
Q psy17863 76 DKSVILWEVTTGQPVRRWRE----------HA-SKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHP---------- 133 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~---------- 133 (341)
+++|.+||..+++++..+.. |. ..+..+.++|++. ++++...++.|.+||+.+.+...
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~ 326 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 326 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence 89999999999998887764 22 3788999999654 56677789999999987754211
Q ss_pred eEEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEeee--cCceEEEEEECCC-CceEEEeC--CCceEEEEccccc-
Q psy17863 134 IQCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHPT-RKHIMSAC--GNNVKLWTAEEDY- 206 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~--~~~i~~~~~~~~~- 206 (341)
....+.+++.+++++ ..+++|.+||..+++....+.... +......+ ++|+ +..++++. +++|.+|+.....
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 122334455555544 568999999999998777665321 11112222 4677 56666653 5899999998722
Q ss_pred -------------CCCCeEEEEEccCCCEEEEee-------cCCeEEEEecccccee-eee--------cCcccceeEEE
Q psy17863 207 -------------GQEPIVDACFTRDCQCILTCS-------TDECLRLFDKATGELL-EEY--------KGHKSGDFRIE 257 (341)
Q Consensus 207 -------------~~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~-~~~--------~~~~~~~~~~~ 257 (341)
+......++++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~-- 483 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ-- 483 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE--
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe--
Confidence 345567899999999999987 2679999999998876 443 233444444
Q ss_pred EEeCCCCCEEEEe-----cCCCcEEEEeeeCCCceEEEE
Q psy17863 258 CCLDSKDSQIFCG-----SSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 258 ~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+.|+|+|+.++.+ +.++.|.|||..+++++..++
T Consensus 484 ~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 484 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 4999999998865 347999999999999988876
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=1.4e-27 Score=195.40 Aligned_cols=270 Identities=13% Similarity=0.183 Sum_probs=194.5
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEECCCCce-eeeecc
Q psy17863 19 VRFNVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQP-VRRWRE 95 (341)
Q Consensus 19 ~~~~~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~ 95 (341)
..|.+++++ +++.+.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665554 6777889999999999999888887666677 9999999997766655 88999999999987 777776
Q ss_pred cCccEEEEEEcCCCcEEEEecCCC---eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 96 HASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
+..+..+++|+|++++++++..++ .|.+||+.+++ ....+.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---------------------------------~~~~~~--- 125 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---------------------------------FISTIP--- 125 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---------------------------------EEEEEE---
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---------------------------------eEEEEE---
Confidence 666665599999999998555442 67777765433 222221
Q ss_pred cCceEEEEEECCCCceEEEeC--CCc-eEEEEccccc-----------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEec
Q psy17863 173 GKAVVNSLCSHPTRKHIMSAC--GNN-VKLWTAEEDY-----------GQEPIVDACFTRDCQCILTC-STDECLRLFDK 237 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~--~~~-i~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~ 237 (341)
.......++++|++++++++. ++. +.+|++.... .......++|+|+|++++++ ..++.|++||+
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 122357899999998665543 367 9999875321 23557899999999966554 46889999999
Q ss_pred cccce---eeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCc--eEEEEee--eecc---ceEEEEEcC
Q psy17863 238 ATGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQ--ISTLIHS--VGKA---VVNSLCSHP 306 (341)
Q Consensus 238 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~~~ 306 (341)
.+++. +..+..+ ..+..+ +++|+|++++.+ ..++.|.+||+.+++. +..+... .+.. ....++|+|
T Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~--~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 206 QNPENITLLNAVGTN-NLPGTI--VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK 282 (331)
T ss_dssp SSTTSCEEEEEEECS-SCCCCE--EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred CCCcccceeeeccCC-CCCceE--EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC
Confidence 98888 7777654 334444 899999977655 4578899999988876 3333311 1112 235689999
Q ss_pred CCcEEEEeC--CCcEEEEEccccc
Q psy17863 307 TRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 307 ~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
|+++|++++ ++.|.+|++.+..
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 999886655 6799999998653
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=3.8e-27 Score=220.03 Aligned_cols=307 Identities=8% Similarity=0.021 Sum_probs=230.0
Q ss_pred eeEEeeeCCcE-------EEEEEccCCCEEEEEeCC------CeEEEEcCCCccee------------------------
Q psy17863 6 VQTIDCKQGAI-------RAVRFNVDGSYCLTCGSD------KKIKLWNPYRNLLL------------------------ 48 (341)
Q Consensus 6 ~~~l~~h~~~v-------~~~~~~~~~~~l~t~~~d------g~i~iw~~~~~~~~------------------------ 48 (341)
.+.|..|...+ ..++|+|||+++++++.+ ..|.+|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 56778888888 999999999977777644 35777876554321
Q ss_pred -------------------------eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-CceeeeecccCccEEE
Q psy17863 49 -------------------------KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREHASKVTC 102 (341)
Q Consensus 49 -------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~ 102 (341)
..+.+|...+.++.|+++ .++++++.|+.+.+|.+.. +.....+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 122456677888889887 6677778889999998753 44455555554 3567
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEecCCCCc------------------CeEEeec--CCCceEEEeeccCeEEEEEccCC
Q psy17863 103 VKFNEDSSVVISGSQDNTVMMWDVKSRSHH------------------PIQCCLD--SKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 103 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+|+|+|+.|+.+ .++.|.+|++...... .+..+.+ +++..++.++ ++.+.+|+...+
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 7999999988887 5899999997432210 1223333 3444566655 889999998876
Q ss_pred cceeeeEeeecCc-eEEEEEECCCCceEEEeCC-CceE-EEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 163 SQISTLIHSVGKA-VVNSLCSHPTRKHIMSACG-NNVK-LWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
+... + ..+.. .+..++|+ +++.++...+ ..+. +|+..... +...+..++|+|||++|++++.++.|+
T Consensus 328 ~~~~-~--~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 328 YVLK-V--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp BEEE-C--SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEE-c--cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence 5433 2 12233 68899999 9988887665 5666 77765432 456789999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC----------cEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG----------KIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
+||+.+++....+.+|...+..+ +|+|||++|++++.++ .|++||+.+++ +..+. .|...+..++
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~--~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~ 478 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDF--TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPA 478 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCE--EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEE
T ss_pred EEECCCCceEEeccCCCCCccce--EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCce
Confidence 99999998887777888877776 8999999998887644 89999998876 55555 6777889999
Q ss_pred EcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
|+|||++|+.++ ++...+|+..
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSS
T ss_pred EcCCCCEEEEEecccCCcCcchh
Confidence 999999999988 7877888754
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1.9e-27 Score=214.03 Aligned_cols=301 Identities=11% Similarity=0.111 Sum_probs=213.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-eEecCcc-----------------cceeEEEEecCCCEEEEecCC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYGGHA-----------------HEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d 76 (341)
.+..+.|. |+.+++++.++ | +||+.+++.+ ..+..+. ..|.+++|+|| +.++.+ .+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQ 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ET
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-EC
Confidence 35567787 66777777788 8 9999998873 4443333 46999999999 666555 35
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC-----CCCc-------C-----------
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-----RSHH-------P----------- 133 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~-------~----------- 133 (341)
+.|++||+.+++.... ..+...+.+++|+|||+.|+++ .++.|.+||+.+ ++.. .
T Consensus 101 ~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 9999999988866443 4466778899999999999985 689999999987 5421 1
Q ss_pred -----eEEeecCCCceEEEee---------------------------------ccCeEEEEEccCCcceeeeEeeecCc
Q psy17863 134 -----IQCCLDSKDSQIFCGS---------------------------------SDGKIYKWQLVDSSQISTLIHSVGKA 175 (341)
Q Consensus 134 -----~~~~~~~~~~~~~~~~---------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~~ 175 (341)
......+++..+++++ .+..|.+||+.+++.........+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 1223344555777776 45789999998876544433223456
Q ss_pred eEEEEEECCCCceEEEeC-C-----CceEEEEcccc-c--------CCC---CeEEEEEcc--CCCEEEEeecCCeEEEE
Q psy17863 176 VVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED-Y--------GQE---PIVDACFTR--DCQCILTCSTDECLRLF 235 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~-----~~i~~~~~~~~-~--------~~~---~i~~~~~~~--~~~~l~~~~~d~~i~i~ 235 (341)
.+..++|+|+++.++++. + ..+.+||..+. . ... .+..++|+| +|++++++..++.+++|
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 789999999999888754 2 27899998765 1 111 235689999 99999999999999999
Q ss_pred ecc-ccceeeeecCcccceeEEEEEeCCCCCEEEEec-CCC----cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 236 DKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDG----KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 236 d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
++. +++.+..+..+...+... ++|+|+++.|+.++ .++ .|+.||+.+++ ...+. +...+.+++|+|||+
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~-~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNF-AGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEE-EEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSS
T ss_pred EEECCCCEEEecCCCCeEEEee-eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCC
Confidence 876 566777777776665541 28999998876554 444 56666665554 34443 566789999999999
Q ss_pred EEEEeC-C----CcEEEEEccccc
Q psy17863 310 HIMSAC-G----NNVKLWTAEEDY 328 (341)
Q Consensus 310 ~l~~~~-d----~~i~vw~~~~~~ 328 (341)
+++... + +.|++|++.++.
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 888765 3 469999987764
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=7.5e-28 Score=217.21 Aligned_cols=298 Identities=9% Similarity=0.075 Sum_probs=211.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecCCCEEEEecCC---------CcEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGASD---------KSVILW 82 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~iw 82 (341)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988888877665 49999999999999998764 778899
Q ss_pred ECCCCce--eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe--------------------------
Q psy17863 83 EVTTGQP--VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------------------- 134 (341)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------- 134 (341)
|+.+++. +.....|...+..++|+|||+.|+.++. +.|++||+.+++...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998876 2222345555889999999999999875 7999999887542111
Q ss_pred EEe-ecCCCceEEEeeccC----------------------------------eEEEEEccCCcceeeeEeee----cCc
Q psy17863 135 QCC-LDSKDSQIFCGSSDG----------------------------------KIYKWQLVDSSQISTLIHSV----GKA 175 (341)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~g----------------------------------~i~~~d~~~~~~~~~~~~~~----~~~ 175 (341)
... ..+++..|+.++.++ .|++||+.+++....+.... +..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 223 344555777776543 79999998877544443211 245
Q ss_pred eEEEEEECCCCceEEEeCC-----CceEEEEccccc--------CCCCe----EEEEEccCCCEEEE--eecCC------
Q psy17863 176 VVNSLCSHPTRKHIMSACG-----NNVKLWTAEEDY--------GQEPI----VDACFTRDCQCILT--CSTDE------ 230 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~--------~~~~i----~~~~~~~~~~~l~~--~~~d~------ 230 (341)
.+..++|+|++++++.... ..+.+||+.+.. +...+ ..++|+|||+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 6889999999998866532 468899986543 22223 37899999997775 45566
Q ss_pred eEEEEe-ccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCC---CcEEEEeeeCCC--ceEEEEe-eeeccceEE
Q psy17863 231 CLRLFD-KATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSS--QISTLIH-SVGKAVVNS 301 (341)
Q Consensus 231 ~i~i~d-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~-~~~~~~v~~ 301 (341)
.|.+|| ...++. ...+..+...+.. ..+|+|+|+.|+..+.+ +.+++|++.... ....+.. ..+...+..
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTK-ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS 414 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEE-EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEe-eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEE
Confidence 577777 344441 4555433333332 13799999998765554 789999986532 2333331 014667889
Q ss_pred EEEcCCCcEEEEeC
Q psy17863 302 LCSHPTRKHIMSAC 315 (341)
Q Consensus 302 ~~~~~~~~~l~~~~ 315 (341)
++|+|||++|+...
T Consensus 415 ~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 415 ASFSHSMDFFLLKC 428 (723)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEc
Confidence 99999999888765
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=4.1e-27 Score=189.30 Aligned_cols=247 Identities=9% Similarity=0.035 Sum_probs=184.8
Q ss_pred EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc-CccEEEEEEcC
Q psy17863 30 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH-ASKVTCVKFNE 107 (341)
Q Consensus 30 t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~ 107 (341)
.++.|+.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3467899999999888765 4455889999999999999999986 78999999999 8777666655 46789999999
Q ss_pred CCcEEEEec--CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC
Q psy17863 108 DSSVVISGS--QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185 (341)
Q Consensus 108 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (341)
++++|++++ .++...+|.++... .. ...+. ....+..++|+|+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~-------------------------------~~-~~~~~---~~~~~~~~~~spd 139 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTG-------------------------------GT-PRLMT---KNLPSYWHGWSPD 139 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTC-------------------------------CC-CEECC---SSSSEEEEEECTT
T ss_pred CCCEEEEEEeCCCCcceEEEEECCC-------------------------------Cc-eEEee---cCCCccceEECCC
Confidence 999999988 33455555543211 11 00110 1112667788888
Q ss_pred CceEEEe--CCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEee-cCCeEEEEecc-ccceeeeecCcccce
Q psy17863 186 RKHIMSA--CGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKA-TGELLEEYKGHKSGD 253 (341)
Q Consensus 186 ~~~~~~~--~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~ 253 (341)
++.++.. .++.+.+|++.... +...+.+++|+|++++++.++ .++.+++|++. .+..+..+..+...+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 8877633 35777888754321 456789999999999887766 58899999986 455667777777666
Q ss_pred eEEEEEeCCCCCEEEEecCC-----------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 254 FRIECCLDSKDSQIFCGSSD-----------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
..+ +|+|++++|++++.+ +.|++||+.+++.........|...+..++|+|++++|++++
T Consensus 220 ~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 220 WFP--HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEE--EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred CCe--EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 655 899999999888765 569999998887644443336778899999999999999887
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=1.3e-25 Score=185.31 Aligned_cols=266 Identities=11% Similarity=0.106 Sum_probs=198.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeC-------CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGS-------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~ 83 (341)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|+++++++ ...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4567889999999998888774 56899999999998888764 445788999999996554 55579999999
Q ss_pred CCCCceeeeecccCc---------cEEEEEEcCCCcEEEEec--CCCeEEEEEecCCCCc---------CeEEeecCCCc
Q psy17863 84 VTTGQPVRRWREHAS---------KVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHH---------PIQCCLDSKDS 143 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~---------~~~~~~~~~~~ 143 (341)
..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++.. +......+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 999998887765432 278899999999887776 4788999998765421 12223334555
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.++.+.+||..+.+....+..... .+...+..++|+|+++++
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDD--------------------------------GKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCS--------------------------------SSCCCEEEEEEETTTTEE
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCC--------------------------------CCCcccceEEECCCCCEE
Confidence 677777788888888777655444332100 013346678899998877
Q ss_pred EEeec-CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 224 LTCST-DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 224 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
++++. ++.|.+||..+++.+..+..... .. ++++|++++++.+ ..++.|.+||..+++.+..+. ....+.+
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~--~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~ 318 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPES--LA--VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD---TPTHPNS 318 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSC--CC--EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE---CCSEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce--EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe---cCCCCCe
Confidence 66655 48999999999988887765442 23 3889999966554 478999999999998887776 3346899
Q ss_pred EEEcCCCcEEEEeC-CC
Q psy17863 302 LCSHPTRKHIMSAC-GN 317 (341)
Q Consensus 302 ~~~~~~~~~l~~~~-d~ 317 (341)
++|+|++++|+++. ++
T Consensus 319 ~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECTTSCEEEEEEECC
T ss_pred EEEcCCCCEEEEEEccc
Confidence 99999999887776 53
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=1.7e-25 Score=183.80 Aligned_cols=265 Identities=9% Similarity=0.189 Sum_probs=174.1
Q ss_pred EEEEEeCCCeEEEEcCC-Cc--ceeeEecCcccceeEEEEecCCCEEEEecCC-CcEEEEECC--CCc--eeeeecccCc
Q psy17863 27 YCLTCGSDKKIKLWNPY-RN--LLLKTYGGHAHEVNDATAACDSSQIASGASD-KSVILWEVT--TGQ--PVRRWREHAS 98 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~ 98 (341)
.+++++.|+.|++|++. ++ +.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999985 33 333333 367789999999999998888876 999999997 554 334444333
Q ss_pred cEEEEEEcCCCcEEEEec-CCCeEEEEEecCCC----------CcCeE-EeecCCCceEEEee-ccCeEEEEEccCCcce
Q psy17863 99 KVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRS----------HHPIQ-CCLDSKDSQIFCGS-SDGKIYKWQLVDSSQI 165 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~g~i~~~d~~~~~~~ 165 (341)
.+..++|+|++++|++++ .++.|.+||+..+. ..... ....+.+..+++++ .++.|.+||+.+....
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 788999999999886665 48899999994211 11122 23344455666666 8899999999762222
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEee-cCCeEEEEeccc--cce
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS-TDECLRLFDKAT--GEL 242 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~ 242 (341)
...... .+.. .....+..++|+|+++++++++ .++.+.+|++.. ++.
T Consensus 165 ~~~~~~-------~~~~-----------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 165 VAQDPA-------EVTT-----------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEE-------EEEC-----------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred eeeccc-------cccc-----------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 211100 0000 0123456788888888665544 788999999853 332
Q ss_pred --eeeec----CcccceeEEEEEeCCCCCEEE-EecCCCcEEEEeeeC--C--CceEEEEeeeeccceEEEEEcCCCcEE
Q psy17863 243 --LEEYK----GHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVD--S--SQISTLIHSVGKAVVNSLCSHPTRKHI 311 (341)
Q Consensus 243 --~~~~~----~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 311 (341)
...+. ++........++++|++++|+ ++..++.|.+|++.. + +.+..+. .+ ..+..++|+|++++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE-TQPRGFNVDHSGKYL 291 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-SSCCCEEECTTSSEE
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-CccceEEECCCCCEE
Confidence 22222 112122233348999998877 555799999999983 2 2333333 23 348899999999988
Q ss_pred EEeC--CCcEEEEEccc
Q psy17863 312 MSAC--GNNVKLWTAEE 326 (341)
Q Consensus 312 ~~~~--d~~i~vw~~~~ 326 (341)
++++ ++.|.+|+++.
T Consensus 292 ~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEECTTTCEEEEEEEET
T ss_pred EEecCCCCeEEEEEEcC
Confidence 8777 79999997763
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=5.7e-27 Score=192.11 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=188.1
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCccc--ceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeeccc-----C
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH--EVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREH-----A 97 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~-----~ 97 (341)
+++++++.++.|.+||..+++.+..+..... .+..++|+|++++++ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887763322 588999999998664 5566789999999999887766531 2
Q ss_pred ccEEEEEEcCCCcEEEEec------------CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 98 SKVTCVKFNEDSSVVISGS------------QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 98 ~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
..+..++|+|++++++++. .++.|.+||+. +.+..
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~---------------------------------~~~~~ 128 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE---------------------------------TLSRR 128 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT---------------------------------TTEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC---------------------------------CCcEE
Confidence 2567899999999888875 34555555554 33333
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCC---------
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDE--------- 230 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~--------- 230 (341)
..+.. ...+..++++|+++.++++ ++.+.+||+.... .......+.|+|+++.++..+..+
T Consensus 129 ~~~~~---~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 129 KAFEA---PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp EEEEC---CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred EEEeC---CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 22221 1235667788888877777 6778888876532 011011236788887665544332
Q ss_pred ---------------eEEEEecccccee-eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 231 ---------------CLRLFDKATGELL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 231 ---------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
.|.+||+.+++.. ..+..+...+..+ +++|++++++++ ++.|++||+.+++.+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--- 277 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST--AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--- 277 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE--EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE--EECCCCCEEEEe--CCeEEEEECCCCcCcceec---
Confidence 4689999888764 2233344444445 899999999988 7999999999888877776
Q ss_pred eccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
....+.+++|+|++++|++++ ++.|++|++.++....
T Consensus 278 ~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 335678999999999999989 9999999998765433
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.8e-25 Score=186.83 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=174.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCC---eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCc-
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDK---KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKS- 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~- 78 (341)
...+.+.+|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 35677889999999999999999999999875 9999999988765 5667888999999999999888 6666554
Q ss_pred -EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 79 -VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 79 -i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|++||+.+++. ..+..|...+.+++|+|+++.|++++. ++ .|.+||+.+++
T Consensus 248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------------------ 302 (415)
T 2hqs_A 248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------------------ 302 (415)
T ss_dssp EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------------------
T ss_pred eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------------------
Confidence 99999988776 566678889999999999998888775 34 45555554432
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC----CceEEEEccccc-----CCCCeEEEEEccCCCEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG----NNVKLWTAEEDY-----GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~ 225 (341)
.. .+. .+...+..++|+|++++++.+.. ..+.+|++.... ....+.+++|+|+|++|++
T Consensus 303 ---------~~-~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 303 ---------PQ-RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIY 370 (415)
T ss_dssp ---------CE-ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEE
T ss_pred ---------EE-EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEE
Confidence 11 111 12235778999999999887763 479999987643 2237899999999999998
Q ss_pred eecCC---eEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 226 CSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 226 ~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
++.++ .|++||+. ++....+..|...+..+ +|+|...
T Consensus 371 ~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~--~~~~~~~ 410 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP--AWSPYLH 410 (415)
T ss_dssp EEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE--EECCCCC
T ss_pred EEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC--ccccccc
Confidence 88877 79999987 56677888898888877 8888643
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=2.2e-24 Score=177.56 Aligned_cols=249 Identities=10% Similarity=0.110 Sum_probs=165.1
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeC---CCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEE
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGS---DKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWE 83 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~ 83 (341)
..+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 44667788999999999 555544 6899999997665 4444455777899999999999888887 679999999
Q ss_pred CCC-Cc--eeeeecc---------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 84 VTT-GQ--PVRRWRE---------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 84 ~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
+.. ++ .+..+.. +...+.+++|+|+++++++...++.|.+|++....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g--------------------- 173 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG--------------------- 173 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS---------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC---------------------
Confidence 963 32 2222221 12348889999999966666678889888887211
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE-eecCC
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT-CSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~ 230 (341)
.+.. ...+.. . .......++|+|||+++++ ...++
T Consensus 174 -~~~~--------~~~~~~--~---------------------------------~g~~p~~~~~spdg~~l~v~~~~~~ 209 (347)
T 3hfq_A 174 -QLSE--------QSVLTM--E---------------------------------AGFGPRHLVFSPDGQYAFLAGELSS 209 (347)
T ss_dssp -CEEE--------EEEEEC--C---------------------------------TTCCEEEEEECTTSSEEEEEETTTT
T ss_pred -cEEE--------eeeEEc--C---------------------------------CCCCCceEEECCCCCEEEEEeCCCC
Confidence 0000 000000 0 0123445677777775554 45678
Q ss_pred eEEEEeccc--cce--eeeecCcccc----eeEEEEEeCCCCCEEE-EecCCCcEEEEeeeCC---CceEEEEeeeeccc
Q psy17863 231 CLRLFDKAT--GEL--LEEYKGHKSG----DFRIECCLDSKDSQIF-CGSSDGKIYKWQLVDS---SQISTLIHSVGKAV 298 (341)
Q Consensus 231 ~i~i~d~~~--~~~--~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 298 (341)
.+.+|++.. ++. +..+...... .....++++|+|++|+ +...++.|.+|++... +.+..+. .+...
T Consensus 210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~ 287 (347)
T 3hfq_A 210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDF 287 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSC
T ss_pred EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCC
Confidence 888988763 332 2223222211 1223348999999874 5566899999998733 2333333 44556
Q ss_pred eEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 299 VNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+..++|+|||++|++++ ++.|.+|+++.
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 88999999999888877 58999997754
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.7e-24 Score=177.77 Aligned_cols=261 Identities=9% Similarity=0.067 Sum_probs=179.3
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCC-CeEEEEcCC--Ccc--eeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEEC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSD-KKIKLWNPY--RNL--LLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEV 84 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~ 84 (341)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 477889999999999999988876 999999987 444 344555444 7899999999998876654 889999999
Q ss_pred C---CCceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecC-CCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 85 T---TGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKS-RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 85 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
. ..+....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++...... ..+..
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~ 174 (343)
T 1ri6_A 114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP------------------AEVTT 174 (343)
T ss_dssp ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE------------------EEEEC
T ss_pred CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc------------------ccccc
Confidence 4 3344445443 34588999999999888777 899999999976 32100000 00000
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------------CCCCeEEEEEccCC
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------------GQEPIVDACFTRDC 220 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------------~~~~i~~~~~~~~~ 220 (341)
. ....+..++++|++++++++. ++.+.+|++.... ....+..++|+|++
T Consensus 175 ~------------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 175 V------------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp S------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred C------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 0 112356788888888665443 4778888874311 12345679999999
Q ss_pred CEEEEe-ecCCeEEEEecc----ccceeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee--CCCc--eEEE
Q psy17863 221 QCILTC-STDECLRLFDKA----TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV--DSSQ--ISTL 290 (341)
Q Consensus 221 ~~l~~~-~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~ 290 (341)
++|+++ ..++.|.+||+. ..+.+..+..+.. +..+ +++|++++|++++ .++.|.+|++. +++. +..+
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF--NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE--EECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE--EECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 888754 478999999998 2344555554443 4555 8999999888777 68999999765 4432 2223
Q ss_pred EeeeeccceEEEEEcCCCc
Q psy17863 291 IHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~ 309 (341)
. ......+++|.|+.+
T Consensus 320 ~---~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 320 A---VGQGPMWVVVNAHEG 335 (343)
T ss_dssp E---CSSSCCEEEEEEEC-
T ss_pred c---cCCCCeeEEEEcccC
Confidence 2 234566788877644
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=9.6e-25 Score=196.40 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=201.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-----Cc
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQ 88 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~ 88 (341)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666654 6999999998876544 44467789999999999999985 679999999998 77
Q ss_pred eeeeecccCcc--------------EEEEEEcCCCcEEEEec---------------------------------CCCeE
Q psy17863 89 PVRRWREHASK--------------VTCVKFNEDSSVVISGS---------------------------------QDNTV 121 (341)
Q Consensus 89 ~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i 121 (341)
.......+... +.+++|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 66554444333 47899999999999987 44789
Q ss_pred EEEEecCCCC----------cCeEEeec-CCCceEEEeeccC-----eEEEEEccCCcceeeeEeeecCc---eEEEEEE
Q psy17863 122 MMWDVKSRSH----------HPIQCCLD-SKDSQIFCGSSDG-----KIYKWQLVDSSQISTLIHSVGKA---VVNSLCS 182 (341)
Q Consensus 122 ~iwd~~~~~~----------~~~~~~~~-~~~~~~~~~~~~g-----~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ 182 (341)
.+||+.+++. ..+..+.+ +++..+++++.++ .|.+||+.+++....+....... .+..++|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 9999876541 12233444 4455677777665 89999999884444443322222 2357899
Q ss_pred CC--CCceEEEeCC-CceEEEEccccc--------CCCCeEE-EEEccCCCEEEEeecC-C----eEEEEeccccceeee
Q psy17863 183 HP--TRKHIMSACG-NNVKLWTAEEDY--------GQEPIVD-ACFTRDCQCILTCSTD-E----CLRLFDKATGELLEE 245 (341)
Q Consensus 183 ~~--~~~~~~~~~~-~~i~~~~~~~~~--------~~~~i~~-~~~~~~~~~l~~~~~d-~----~i~i~d~~~~~~~~~ 245 (341)
+| ++++++++.. +.+++|.++... +...+.. ++|+|+++.|+.++.+ + .|..||+.+++ ...
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~ 396 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD 396 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee
Confidence 99 9998887764 678888765211 3445666 7999999987665544 3 67777777665 334
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCC----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCC--cE
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSD----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN--NV 319 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~--~i 319 (341)
+. +...+..+ +|+|++++++....+ +.|++||+.+++ ...+. +..++....+.+.....+...|| .+
T Consensus 397 l~-~~~~~~~~--~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~ 469 (706)
T 2z3z_A 397 LT-PESGMHRT--QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE---AKNPDTGYAMPEIRTGTIMAADGQTPL 469 (706)
T ss_dssp SC-CSSSEEEE--EECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE---CC------CCCCEEEEEEECTTSSSEE
T ss_pred cc-CCCceEEE--EECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc---ccchhhhcCCCCcEEEEEEcCCCCEEE
Confidence 43 45556555 899999988876443 569999998876 33332 33345444444333333333355 56
Q ss_pred EEEEc
Q psy17863 320 KLWTA 324 (341)
Q Consensus 320 ~vw~~ 324 (341)
..|-.
T Consensus 470 ~~~~~ 474 (706)
T 2z3z_A 470 YYKLT 474 (706)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3e-25 Score=200.78 Aligned_cols=264 Identities=11% Similarity=0.052 Sum_probs=196.2
Q ss_pred ccceeEEEEecCCCEEEEecC-CC-----cEEEEECCCCceeeeecccC------------------------ccEEEEE
Q psy17863 55 AHEVNDATAACDSSQIASGAS-DK-----SVILWEVTTGQPVRRWREHA------------------------SKVTCVK 104 (341)
Q Consensus 55 ~~~v~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~------------------------~~v~~~~ 104 (341)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999988 88 89999999998776665443 2378999
Q ss_pred EcCCCcEEEEecCCCeEEEEEecCC---CC-------cCeEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 105 FNEDSSVVISGSQDNTVMMWDVKSR---SH-------HPIQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 105 ~~~~~~~l~~~~~d~~i~iwd~~~~---~~-------~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
|+|||++|++++. +.|.+||+.++ .. ..+....+++++ .++.++ ++.|++||+.+++..........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 99999999887 42 223444455555 455554 67999999988665443322111
Q ss_pred C--------------ceEEEEEECCCCceEEEeCC-C---------------------------------ceEEEEccc-
Q psy17863 174 K--------------AVVNSLCSHPTRKHIMSACG-N---------------------------------NVKLWTAEE- 204 (341)
Q Consensus 174 ~--------------~~~~~~~~~~~~~~~~~~~~-~---------------------------------~i~~~~~~~- 204 (341)
. ..+..++|+|+|+.|+.+.. + .+.+||+..
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 01467999999998888742 2 678888766
Q ss_pred cc---------CCCCeEEEEEccCCCEEEEeec-----CCeEEEEeccccceeeeecCccc----ceeEEEEEeCCCCCE
Q psy17863 205 DY---------GQEPIVDACFTRDCQCILTCST-----DECLRLFDKATGELLEEYKGHKS----GDFRIECCLDSKDSQ 266 (341)
Q Consensus 205 ~~---------~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 266 (341)
.. +...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..+ +|+|+|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~spdg~~ 350 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL--RFLDDGSI 350 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC--EECTTSCE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce--EECCCCeE
Confidence 32 3456889999 99999987654 56799999999887766655442 22334 89999999
Q ss_pred EEEecCCCcEEEEeee-CCCceEEEEeeeeccceEEE-EEcCCCcEEEE-eC-CC--cEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSL-CSHPTRKHIMS-AC-GN--NVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~-d~--~i~vw~~~~ 326 (341)
+++++.||.++||.+. +++ ...+. .+...+..+ .|+|+++.|+. ++ ++ .++||+++.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALT--HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESC--CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEecCCCccEEEEEcCCCC-eeeee--ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999988888876 444 55665 567778887 59999987754 44 55 899999864
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=1.8e-24 Score=178.15 Aligned_cols=265 Identities=9% Similarity=0.075 Sum_probs=193.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeecc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
.++++++++++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999999888876443 2578899999998655 556789999999999988776653
Q ss_pred cC------ccEEEEEEcCCCcEEEEecCC------------CeEEEEEecCCCC----------cCeEEeecCCCceEEE
Q psy17863 96 HA------SKVTCVKFNEDSSVVISGSQD------------NTVMMWDVKSRSH----------HPIQCCLDSKDSQIFC 147 (341)
Q Consensus 96 ~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~ 147 (341)
+. ..+..++|+|+++++++++.+ +.|.+||+.+++. ..+..+...+++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE
Confidence 22 237789999999999998865 8999999987321 1122222344444665
Q ss_pred eeccCeEEEEEccCCcceeeeEeeec----------------------CceEEEEEECCCCce-----------E-EEeC
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVG----------------------KAVVNSLCSHPTRKH-----------I-MSAC 193 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~-----------~-~~~~ 193 (341)
++ +.|.+||..+++....+..... ......+++++++.. + +-..
T Consensus 164 ~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 43 4499999988876655432210 003445666655421 1 1222
Q ss_pred CCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 194 GNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 194 ~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
.+.+.+++... ....+..++++| ++++++++ ++.|.+||+.+++.+..+.... .+..+ +++|++++|++++.
T Consensus 242 ~~~~~~~~~~~--~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCV--AFDKKGDKLYLGGT 314 (349)
T ss_dssp TCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEE--EECSSSSCEEEESB
T ss_pred CCcEEeccccc--CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cccce--EECCCCCEEEEecC
Confidence 46677777743 456788999999 99999888 8899999999998877776433 34455 89999999888888
Q ss_pred CCcEEEEeeeCCCceEEEE
Q psy17863 273 DGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~ 291 (341)
++.|++||+.+++.+..+.
T Consensus 315 ~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEeccccceeeeee
Confidence 9999999999998888776
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=8.2e-24 Score=172.99 Aligned_cols=249 Identities=8% Similarity=0.092 Sum_probs=177.4
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeC-CCeEEEEcCCCcce-eeEecCcccceeEEEEecCCCEEEEecCCC---c
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLL-LKTYGGHAHEVNDATAACDSSQIASGASDK---S 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 78 (341)
+.+..+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN 109 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCccc
Confidence 4555666666777 9999999997776665 88999999999887 777776766666699999999999665553 8
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCe-EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNT-VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
|.+||+.+++.+..+..+ ....+++|+|++++++++ ..++. +.+|++..... +
T Consensus 110 i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~----------------------~-- 164 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV----------------------L-- 164 (331)
T ss_dssp EEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC----------------------E--
T ss_pred EEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCc----------------------E--
Confidence 999999999888877643 456899999999866555 44577 99999875320 0
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc---------CCCCeEEEEEccCCCEEEE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY---------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~ 225 (341)
.+.. . ..+ .....+..++++|++++++++. ++.+.+|++.... ....+..++|+|+|+++++
T Consensus 165 ~~~~-~---~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 165 FDTG-Q---EFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp EEEE-E---EEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred eecC-C---ccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEE
Confidence 0000 0 000 1223468899999999665554 5789999987543 2345678999999997765
Q ss_pred ee-cCCeEEEEeccccce--eeeecCc----ccceeE-EEEEeCCCCCEEEEe-cCCCcEEEEeeeCCC
Q psy17863 226 CS-TDECLRLFDKATGEL--LEEYKGH----KSGDFR-IECCLDSKDSQIFCG-SSDGKIYKWQLVDSS 285 (341)
Q Consensus 226 ~~-~d~~i~i~d~~~~~~--~~~~~~~----~~~~~~-~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 285 (341)
++ .++.|.+||+.+++. +..+..+ ...... ..++|+|++++|+++ ..++.|.+||+....
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 54 577899999998876 3333322 222211 123899999987655 456799999986543
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=5e-25 Score=193.81 Aligned_cols=261 Identities=11% Similarity=0.045 Sum_probs=186.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeC-CCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecC---CCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGAS---DKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~ 86 (341)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3578999999999999999887 99999999865554 4455455 68999999999 77777664 45566665533
Q ss_pred ---CceeeeecccCccEEEEEEcCCCc--EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 87 ---GQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 87 ---~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
+... .+.... .+...+|+|+++ .+++++.+ .+.+||+.+++
T Consensus 98 ~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~------------------------------- 143 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGG------------------------------- 143 (582)
T ss_dssp TSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTE-------------------------------
T ss_pred cCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCc-------------------------------
Confidence 2322 333222 234567777765 34444444 44488776543
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC-C----CceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
... +... .. .+++++|+|+.++.+. + ..|++||+.+.. +...+..++|+|||+.|+++..++
T Consensus 144 --~~~-l~~~--~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 144 --LRE-LARL--PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAR 216 (582)
T ss_dssp --EEE-EEEE--SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSS
T ss_pred --EEE-eecC--CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCC
Confidence 111 1111 11 6788999999998654 2 568899876543 556789999999999999888888
Q ss_pred --eEEEEeccccceeeeecCcccceeEEEEE--------eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 231 --CLRLFDKATGELLEEYKGHKSGDFRIECC--------LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 231 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
.|++||+.+++.. .+.+|...+..+ + |+|||.++++++.+|.+++|++ ++... ...+.+.
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~~~v~ 286 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSY--RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQGNHG 286 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHH--CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCSSEEE
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhh--hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCCCceE
Confidence 8999999988877 777776655544 4 9999988999999999999998 55433 2336788
Q ss_pred EEEEcCCCcEEEEeC-CC---cEEEEEccc
Q psy17863 301 SLCSHPTRKHIMSAC-GN---NVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~-d~---~i~vw~~~~ 326 (341)
+++|+ +++++++++ +. .+.+|+..+
T Consensus 287 ~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 999998887 64 366666543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.3e-24 Score=173.17 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=170.0
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-cceeeEecCc-ccceeEEEEecCCCEEEEec--CCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGH-AHEVNDATAACDSSQIASGA--SDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~i 81 (341)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...+
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 446677999999999999999999987 88999999998 7777666555 36789999999999999988 3345555
Q ss_pred EE--CCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WE--VTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|. ..+++ ...+..+ ..+..++|+|+++.|+ ++..++.+++|+++.....
T Consensus 113 ~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-------------------------- 164 (297)
T 2ojh_A 113 YLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-------------------------- 164 (297)
T ss_dssp EEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--------------------------
T ss_pred EEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--------------------------
Confidence 54 44444 3444433 3488999999999877 7778888888887532210
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeec
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
...+ ......+..++|+|+++.++... ++.+.+|++.... +...+..++|+|++++|++++.
T Consensus 165 ------~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 165 ------ETRL--THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp ------EEEC--CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred ------ceEc--ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 0000 11234578899999998777654 5778888876321 4557888999999999988876
Q ss_pred C-----------CeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 229 D-----------ECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 229 d-----------~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
+ +.|++||+.+++. +..+.+|...+..+ +|+|++++|++++.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP--NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC--CBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc--eECCCCCEEEEEEecc
Confidence 5 5699999988765 33444677777766 8999999998877653
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.94 E-value=7.8e-23 Score=169.23 Aligned_cols=275 Identities=9% Similarity=0.121 Sum_probs=180.7
Q ss_pred cCCCEEEEEe----CCCeEEEEcC--CCcceeeEecCcccceeEEEEecCCCEEEEecCC----CcEEEEECCC--Cce-
Q psy17863 23 VDGSYCLTCG----SDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTT--GQP- 89 (341)
Q Consensus 23 ~~~~~l~t~~----~dg~i~iw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~- 89 (341)
+...+++.|+ .++.|.+|.+ .+++.......+......++|+|++++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3445666664 3568999865 4454433222266778889999999999998875 7999999865 432
Q ss_pred -eeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCC-cCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 90 -VRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSH-HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 90 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
+.....+......+++ ++++|++++ .++.+.+|++..... ......... ......
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------------------~g~~~~- 148 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF-------------------KGSGPD- 148 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC-------------------CCCCSC-
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc-------------------cCCCCC-
Confidence 3333445566777888 677666665 578999999875321 010000000 000000
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------------------CCCCeEEEEEccCCCEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------------------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------------------~~~~i~~~~~~~~~~~l~ 224 (341)
........+.+++++|++++++++. ++.+.+|++.... .......++|+|+|++++
T Consensus 149 --~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 149 --KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp --TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred --ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 0000123468899999999776654 4789999876432 234567899999999887
Q ss_pred Eee-cCCeEEEEeccccce--eeeec---CcccceeEEEEEeCCCCCEEEEecC--CCcEEEEeee--CCCc--eEEEEe
Q psy17863 225 TCS-TDECLRLFDKATGEL--LEEYK---GHKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLV--DSSQ--ISTLIH 292 (341)
Q Consensus 225 ~~~-~d~~i~i~d~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~~--~~~~~~ 292 (341)
+++ .++.|.+|++.+++. +..+. .+......+ +++|+|++|+++.. ++.|.+|++. +++. +..+.
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i--~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~- 303 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI--HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL- 303 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE--EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE--EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-
Confidence 777 689999999987654 22232 222233344 89999999876655 4899999986 3442 22333
Q ss_pred eeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 293 SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 293 ~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
. ...+..++|+|||++|++++ ++.|.+|+++.
T Consensus 304 -~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 304 -T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp -C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred -C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 2 45788999999999888876 78999987763
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.94 E-value=1.9e-24 Score=180.71 Aligned_cols=306 Identities=12% Similarity=0.076 Sum_probs=199.3
Q ss_pred eeeeEEeeeCCcEEE-----EEEccCCCEEEEEeC-CC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRA-----VRFNVDGSYCLTCGS-DK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~-----~~~~~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+||++.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 345667777766666 889999999998887 66 4888899888877766667666667889999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCccEEEEE--EcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 76 DKSVILWEVTTGQPVRRWREHASKVTCVK--FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
++.|++||+.+++....+..+...+.... +++++.+++....++ ....+..... .-...+....+..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR---------EDWVPLTDWK--KFHEFYFTKPCCR 169 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG---------GGCCCCCSHH--HHHHHGGGCCCEE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC---------cccccccccc--hhhhhhccCCcce
Confidence 99999999999987776666666554444 478888776532110 0000000000 0000011223467
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECC-CCceEEEeCC-------CceEEEEccccc------CC--CCeEEEEEc
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAEEDY------GQ--EPIVDACFT 217 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~~~~------~~--~~i~~~~~~ 217 (341)
|.+||+.+++..... . ....+..+.|+| +++.++.... ..+.+++..... +. ..+....|+
T Consensus 170 l~~~d~~~g~~~~l~-~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 170 LMRVDLKTGESTVIL-Q--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEETTTCCEEEEE-E--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEEECCCCceEEee-c--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 888888876543332 2 234578999999 9998876553 257777765432 22 247788999
Q ss_pred cCCCEEEEeec-C----CeEEEEeccccce--eeeecCccccee-EEEEEeCCCCCEEEEe---------cCCCcEEEEe
Q psy17863 218 RDCQCILTCST-D----ECLRLFDKATGEL--LEEYKGHKSGDF-RIECCLDSKDSQIFCG---------SSDGKIYKWQ 280 (341)
Q Consensus 218 ~~~~~l~~~~~-d----~~i~i~d~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~---------~~dg~i~iwd 280 (341)
|||+.|+..+. + ..|++||+.+++. +..+.++..... .-...|+|+|+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99997765443 2 2499999998864 333333110000 0001588999887754 4567899999
Q ss_pred eeCCCceEEEEeeeecc-----------ceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 281 LVDSSQISTLIHSVGKA-----------VVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+.+++. ..+. .+.. .+.+++|+|||+.|+..+ ++...||.++-
T Consensus 327 ~~~~~~-~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 327 MKNGTQ-HRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTTTEE-EEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccCCce-EEec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 887654 4444 3443 578899999999888766 77777776653
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.3e-24 Score=194.35 Aligned_cols=304 Identities=8% Similarity=0.031 Sum_probs=206.7
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecCCCEEEEecC---------CCcEEEEECC
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGAS---------DKSVILWEVT 85 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~ 85 (341)
+++|+|||+++++ +.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965555 5699999999999988777765544 3999999999999998876 7899999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC---------------------------eEEee
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------------------------IQCCL 138 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------~~~~~ 138 (341)
+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.+++... .....
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 887631111 124688899999999999885 7899999997654211 12334
Q ss_pred cCCCceEEEeeccC----------------------------------eEEEEEccCCcce--eeeEe----eecCceEE
Q psy17863 139 DSKDSQIFCGSSDG----------------------------------KIYKWQLVDSSQI--STLIH----SVGKAVVN 178 (341)
Q Consensus 139 ~~~~~~~~~~~~~g----------------------------------~i~~~d~~~~~~~--~~~~~----~~~~~~~~ 178 (341)
.+++..|+.++.+. .|.+||+.+++.. ..+.. ..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 44556777776552 7889999887643 11110 12445689
Q ss_pred EEEECCCCceEEEeCC-----CceEEEE----cccc-----------cCCCCeE-----EEEEccCCCEEEE--eecCC-
Q psy17863 179 SLCSHPTRKHIMSACG-----NNVKLWT----AEED-----------YGQEPIV-----DACFTRDCQCILT--CSTDE- 230 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~-----~~i~~~~----~~~~-----------~~~~~i~-----~~~~~~~~~~l~~--~~~d~- 230 (341)
.++|+|++++++...+ ..|.+|+ ..+. .+...+. .+.|+|||+.++. ...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 9999999887766432 2488888 5432 1233444 7899999996654 44444
Q ss_pred -eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC-----CCcEEEEeeeC--CC-ceEEEEe--eeeccce
Q psy17863 231 -CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-----DGKIYKWQLVD--SS-QISTLIH--SVGKAVV 299 (341)
Q Consensus 231 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~--~~-~~~~~~~--~~~~~~v 299 (341)
.|.+||+.+++ ...+..+...+..+ .++ +++.++..+. ++..++|.+.. +. ....+.. .++...+
T Consensus 337 ~~l~~~~~~~~~-~~~lt~~~~~v~~~--~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 337 KHIHYIKDTVEN-AIQITSGKWEAINI--FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp EEEEEESSCSTT-CEECSCSSSCEEEE--EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred eEEEEEECCCCc-eEecccCceEEEEE--EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 57778887665 44555555555554 344 6666665554 48899998865 32 1233320 0145678
Q ss_pred EEEEEcCCCcEEEEe-C-C--CcEEEEEccccc
Q psy17863 300 NSLCSHPTRKHIMSA-C-G--NNVKLWTAEEDY 328 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~-~-d--~~i~vw~~~~~~ 328 (341)
..+.|+|++++++.. + . ..+.+|++.++.
T Consensus 413 ~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 413 YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 889999999877743 3 2 468888876543
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=9.3e-25 Score=197.04 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=188.2
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEEEcCCCcEEEEecCC---------CeEEEE
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVKFNEDSSVVISGSQD---------NTVMMW 124 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iw 124 (341)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999988877776664 48999999999999998764 788899
Q ss_pred EecCCCCcC----------eEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecC----------------ceE
Q psy17863 125 DVKSRSHHP----------IQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGK----------------AVV 177 (341)
Q Consensus 125 d~~~~~~~~----------~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~----------------~~~ 177 (341)
|+.+++... +....+++++ .++.++. +.|++||+.+++........... ..+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 998765311 2233344444 6666654 89999999887765443322111 123
Q ss_pred EEEEECCCCceEEEeCC-----------------------------------CceEEEEcccccC-------------CC
Q psy17863 178 NSLCSHPTRKHIMSACG-----------------------------------NNVKLWTAEEDYG-------------QE 209 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-----------------------------------~~i~~~~~~~~~~-------------~~ 209 (341)
..++|+|+|+.|+.+.. ..+.+||+..... ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 78999999999888752 1688999876541 34
Q ss_pred CeEEEEEccCCCEEEEeec----CCeEEEEeccccceeeeecCc-ccceeE--EEEEeCCCCCEEEE--ecCCC------
Q psy17863 210 PIVDACFTRDCQCILTCST----DECLRLFDKATGELLEEYKGH-KSGDFR--IECCLDSKDSQIFC--GSSDG------ 274 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~l~~--~~~dg------ 274 (341)
.+..++|+|||+++++... +..|++||+.+++....+..+ ...+.. ...+|+|+|+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 6788999999998876643 357999999988876655433 222220 12389999997775 45666
Q ss_pred cEEEEee-eCCCc--eEEEEeeeeccceEE-EEEcCCCcEEEEeC--C--CcEEEEEcccc
Q psy17863 275 KIYKWQL-VDSSQ--ISTLIHSVGKAVVNS-LCSHPTRKHIMSAC--G--NNVKLWTAEED 327 (341)
Q Consensus 275 ~i~iwd~-~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~--d--~~i~vw~~~~~ 327 (341)
.|++||+ ..++. ...+. .+...+.. ++|+|||+.|+..+ + +.+++|+++..
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5667773 33331 44444 23334444 69999999997665 4 78999998643
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=8.5e-24 Score=178.37 Aligned_cols=241 Identities=9% Similarity=0.117 Sum_probs=165.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc----------ee------eEecCcccceeEEEEecCCCEEE----E
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL----------LL------KTYGGHAHEVNDATAACDSSQIA----S 72 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~----------~~------~~~~~~~~~v~~~~~~~~~~~l~----~ 72 (341)
...++.+++++++.++++++.++ +++|+..... .+ ..+ .+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34689999999999999999888 8888643110 11 112 2556799999999999999 7
Q ss_pred ecCCCcEEEEECCCC--------ce---eeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecC
Q psy17863 73 GASDKSVILWEVTTG--------QP---VRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS 140 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 140 (341)
++.|+.|++||+.++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~---------- 183 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV---------- 183 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----------
Confidence 889999999998764 22 4556679999999999997 8899999999999999987532
Q ss_pred CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
...... .|...+.+++|+|+|
T Consensus 184 -----------------------~~~~~~------------------------------------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 184 -----------------------KVCATL------------------------------------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp -----------------------EEEEEE------------------------------------CGGGCEEEEEECTTS
T ss_pred -----------------------ceeecc------------------------------------CCCCceeEEEEcCCC
Confidence 000000 023467888999999
Q ss_pred CEEEEeecCCeEEEEeccccceeeeecCccc-----ceeEEEEEeCCCCCEEEEe-cCCC------cEEEEeeeCCCc--
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYKGHKS-----GDFRIECCLDSKDSQIFCG-SSDG------KIYKWQLVDSSQ-- 286 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~dg------~i~iwd~~~~~~-- 286 (341)
++|++|+.||.|++||.+ ++....+..|.. ......++|++++.++++. ..+| .+++|++.+.+.
T Consensus 205 ~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~ 283 (434)
T 2oit_A 205 KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKH 283 (434)
T ss_dssp SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCC
T ss_pred CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCC
Confidence 999999999999999998 555555544322 1233444788888777543 3343 389999976531
Q ss_pred eEEEE---ee-----eeccceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 287 ISTLI---HS-----VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 287 ~~~~~---~~-----~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
...+. .. ....+-..+.+-++.+++++++ .+.|.|....
T Consensus 284 ~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 284 PEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 11111 00 1122223344447777766665 6667776644
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.2e-21 Score=162.02 Aligned_cols=262 Identities=9% Similarity=0.095 Sum_probs=173.8
Q ss_pred eCCcEEEEEEccCCCEEEEEeCC----CeEEEEcCCC--cc--eeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSD----KKIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILW 82 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~d----g~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 82 (341)
|...+..++|+|||++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67778889999999999998875 7999998765 33 33334445556677777 788777765 57899999
Q ss_pred ECCCCceeeeec--------------ccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCC----cCeEEeecCCCc
Q psy17863 83 EVTTGQPVRRWR--------------EHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSH----HPIQCCLDSKDS 143 (341)
Q Consensus 83 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~ 143 (341)
++.....+..+. .+...+.+++|+|+++++++++ .++.|.+|++..... ..+...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~------ 199 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK------ 199 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE------
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec------
Confidence 997543332211 1223458899999999665554 578899998875431 000000
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------------CCC
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------GQE 209 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------~~~ 209 (341)
+.. ... .......+..++|+|+++++++.. ++.+.+|++.... +..
T Consensus 200 --------~~~-----------~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~ 259 (361)
T 3scy_A 200 --------GTP-----------EAF-KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ 259 (361)
T ss_dssp --------EEE-----------EEE-ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred --------ccc-----------cce-ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence 000 000 111223467899999999876665 5889999987431 223
Q ss_pred CeEEEEEccCCCEEEEeecC--CeEEEEecc--ccc--eeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee
Q psy17863 210 PIVDACFTRDCQCILTCSTD--ECLRLFDKA--TGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV 282 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 282 (341)
....++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..+ +|+|+|++|++++ .++.|.+|++.
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~--~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNF--IITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEE--EECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceE--EECCCCCEEEEEECCCCCEEEEEEE
Confidence 45799999999998776665 899999985 344 3444443 3344455 8999999888876 67899997654
Q ss_pred --CCCceEEEEeeeeccceEEEEEc
Q psy17863 283 --DSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 283 --~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
+++...... ..+...+.|+.|.
T Consensus 337 ~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 337 QATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp TTTCCEEECSC-CEECSSEEEEEEE
T ss_pred CCCCcEeecce-eeeCCCCeEEEEc
Confidence 555433321 1345578888886
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=4.4e-23 Score=168.98 Aligned_cols=243 Identities=11% Similarity=0.059 Sum_probs=180.6
Q ss_pred eeeeEEeeeCC--cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCc-----ccceeEEEEecCCCEEEEec-
Q psy17863 4 TCVQTIDCKQG--AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGH-----AHEVNDATAACDSSQIASGA- 74 (341)
Q Consensus 4 ~~~~~l~~h~~--~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~- 74 (341)
+.++++..... .+..++|+|+|++++ ++..++.|.+||+.+++.+..+... ...+..++|+|++++++++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence 44555553221 588999999998665 5556789999999999888776532 23678899999999998886
Q ss_pred -----------CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe--------E
Q psy17863 75 -----------SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI--------Q 135 (341)
Q Consensus 75 -----------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~ 135 (341)
.++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.... .
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC
Confidence 579999999999888777764 4567889999999988887 68899999987542100 0
Q ss_pred EeecCCCceEEEee-ccC-----------------------eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 136 CCLDSKDSQIFCGS-SDG-----------------------KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 136 ~~~~~~~~~~~~~~-~~g-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
....+++..++... .++ .+.+||+.+++.. ..........+..++++|+++++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEE
Confidence 01112222222222 111 5789999988765 4444445556889999999999988
Q ss_pred eCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc
Q psy17863 192 ACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS 251 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 251 (341)
+ ++.+.+||+.... ....+.+++|+|+|+++++++.++.|++||+.+++.+..+..+..
T Consensus 258 ~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 258 A-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp E-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred e-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 8 7899999987543 345678999999999999999999999999999998888765543
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.8e-22 Score=166.50 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=177.6
Q ss_pred cccceeEEEEecCCCEEEEecC-------CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEE
Q psy17863 54 HAHEVNDATAACDSSQIASGAS-------DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWD 125 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd 125 (341)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4456789999999998888774 56899999999998888764 34577899999998555 445578888888
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC---CCceEEEEc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTA 202 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~ 202 (341)
+.+++. +..+......... ......+..++++|+++.++++. ++.+.+||.
T Consensus 118 ~~~~~~----------------------~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 118 AKTGEV----------------------KGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp TTTCCE----------------------EEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred CCCCee----------------------EEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 876541 1111111000000 00112367899999999777765 477999998
Q ss_pred cccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC----cccceeEEEEEeCCCCCEEEEec
Q psy17863 203 EEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG----HKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 203 ~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.... ....+..++|+|+++++++++.++.|.+||..+++.+..+.. +...+..+ +++|++++++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINI--SLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEE--EEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceE--EECCCCCEEEEEe
Confidence 7543 344578899999999999999999999999999988877664 33333444 8999999777665
Q ss_pred C-CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE-eC-CCcEEEEEcccccCC
Q psy17863 272 S-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS-AC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 272 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~~i~vw~~~~~~~~ 330 (341)
. ++.|.+||..+++.+..+.. .. ...++|+|+++++++ .. ++.|.+||+.++...
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 4 59999999999998887772 22 256999999996554 44 899999999876543
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=3e-23 Score=175.02 Aligned_cols=225 Identities=8% Similarity=0.080 Sum_probs=161.0
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc----------eeee-----ecccCcc
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----------PVRR-----WREHASK 99 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~ 99 (341)
+.+++|+... . + ....++.+++++++.++++++.++ +++|+..... .+.. ...+...
T Consensus 23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688887531 1 1 334688999999999999999888 8998753210 0110 1125667
Q ss_pred EEEEEEcCCCcEEE----EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCc
Q psy17863 100 VTCVKFNEDSSVVI----SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175 (341)
Q Consensus 100 v~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 175 (341)
|.+++|+|++++|+ +++.|+.|++||+++...... ...+.+..+...
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~---- 145 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-------------------------QQKRPFAYHKLL---- 145 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-------------------------SSCCCSEEEECC----
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-------------------------CCcceeeeeecc----
Confidence 99999999999999 788899999999875310000 000000000000
Q ss_pred eEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCccccee
Q psy17863 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 254 (341)
..|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...+.
T Consensus 146 -----------------------------~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 146 -----------------------------KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp -----------------------------CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred -----------------------------CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence 013467888888887 78899999999999999998877767777888888
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-----eeccceEEEEEcCCCcEEEEeC--CCc------EEE
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----VGKAVVNSLCSHPTRKHIMSAC--GNN------VKL 321 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--d~~------i~v 321 (341)
++ +|+|+|++|++|+.||.|++||++ ++....+... .|...|.+++|++++.++++.+ +|. +++
T Consensus 197 ~v--~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 197 SV--CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EE--EECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred EE--EEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 87 899999999999999999999987 5555555411 1233899999999999887655 533 899
Q ss_pred EEccccc
Q psy17863 322 WTAEEDY 328 (341)
Q Consensus 322 w~~~~~~ 328 (341)
|++.+..
T Consensus 274 ~~l~~~~ 280 (434)
T 2oit_A 274 ALLPKKE 280 (434)
T ss_dssp EECCCTT
T ss_pred EEeccCC
Confidence 9998653
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=5.7e-22 Score=178.88 Aligned_cols=306 Identities=11% Similarity=0.082 Sum_probs=202.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-----eeEEEEecCCCEEEEecCC---------CcE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGASD---------KSV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i 79 (341)
....+++|+|||++++++ |+.|++||+.+++....+..|... ...++|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999887777776543 2447899999999998875 567
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC---------e----------------
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------I---------------- 134 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~---------------- 134 (341)
.+||+.+++.. .+..|...+...+|+|||+.|+.+ .++.|.+|++.++.... +
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998764 456677889999999999999988 47899999987654211 1
Q ss_pred --EEeecCCCceEEEeecc------------------------------------CeEEEEEccC---Ccc--eeeeEee
Q psy17863 135 --QCCLDSKDSQIFCGSSD------------------------------------GKIYKWQLVD---SSQ--ISTLIHS 171 (341)
Q Consensus 135 --~~~~~~~~~~~~~~~~~------------------------------------g~i~~~d~~~---~~~--~~~~~~~ 171 (341)
.....+++..|+..+.| .+|.+||+.+ ++. ...+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 02234444556665422 1578889887 632 2222211
Q ss_pred ----ecCceEEEEEECCCCceEEEeCC-----CceEEEEccccc---------------CCCCe-----EEEEEccCCCE
Q psy17863 172 ----VGKAVVNSLCSHPTRKHIMSACG-----NNVKLWTAEEDY---------------GQEPI-----VDACFTRDCQC 222 (341)
Q Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~---------------~~~~i-----~~~~~~~~~~~ 222 (341)
.+...+..++|+|+++.++.... ..|.+||+.+.. +...+ ....|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 14456889999999997665432 368999976543 22222 36889999998
Q ss_pred EE-Eeec-C--CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE-EEecC----CCcEEEEeeeCC--CceEEEE
Q psy17863 223 IL-TCST-D--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSS----DGKIYKWQLVDS--SQISTLI 291 (341)
Q Consensus 223 l~-~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~----dg~i~iwd~~~~--~~~~~~~ 291 (341)
++ ..+. + ..|++||...++... +......+..+. .++ ++.| +++.. .+...||.+... +....+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt 408 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred EEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence 76 5543 3 468888988665543 333333444331 344 5544 44443 344566655432 2221232
Q ss_pred ee--eeccceEEEEEcCCCcEEEEeC-C---CcEEEEEcccc
Q psy17863 292 HS--VGKAVVNSLCSHPTRKHIMSAC-G---NNVKLWTAEED 327 (341)
Q Consensus 292 ~~--~~~~~v~~~~~~~~~~~l~~~~-d---~~i~vw~~~~~ 327 (341)
.. ........+.|+|++++++... + ..+.+++..++
T Consensus 409 ~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 409 CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 10 1235688999999999876554 2 35777776644
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.91 E-value=2.7e-22 Score=165.37 Aligned_cols=276 Identities=9% Similarity=0.088 Sum_probs=194.7
Q ss_pred CCCEEEEEe------CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----------CCcEEEEECCCC
Q psy17863 24 DGSYCLTCG------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTG 87 (341)
Q Consensus 24 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~ 87 (341)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+||+++++++.. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666543 3779999999999998888877666 8999999999998862 577999999998
Q ss_pred ceeeeeccc------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCe-E-------EeecCC-CceEEEeec
Q psy17863 88 QPVRRWREH------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPI-Q-------CCLDSK-DSQIFCGSS 150 (341)
Q Consensus 88 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~-------~~~~~~-~~~~~~~~~ 150 (341)
+.+..+... ......++++|+|++|+++.. ++.|.+||+.+.+.... . ....+. ...+++.+.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence 888777532 234567999999999998864 58999999987652111 0 112222 247788899
Q ss_pred cCeEEEEEccCCccee-eeE----eeecCceEEEEEECCCCceE-EEeCCCceEEEEcccccC-----------------
Q psy17863 151 DGKIYKWQLVDSSQIS-TLI----HSVGKAVVNSLCSHPTRKHI-MSACGNNVKLWTAEEDYG----------------- 207 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~----------------- 207 (341)
||.+.+++........ ... ...... ...+..++++..+ +...++.+.++|+.....
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 9999999986532222 110 000000 1111223444333 333456777777643210
Q ss_pred --CCCeEEEEEccCCCEEEEeec-----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 208 --QEPIVDACFTRDCQCILTCST-----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 208 --~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
......++++|+++.++++.. .+.|.+||+.+++.+..+..+. ...+ +++|+|++|++++. +
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i--a~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM--TIDQQRNLMLTLDG-G 325 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE--EEETTTTEEEEECS-S
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE--EECCCCCEEEEeCC-C
Confidence 011123789999888877643 3589999999999999998776 5666 89999999998887 9
Q ss_pred cEEEEeeeCC--CceEEEEeeeeccceEEEEEcCCCc
Q psy17863 275 KIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 275 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.|.+||..++ +.+..+. ........++++|+|+
T Consensus 326 ~v~v~D~~t~~l~~~~~i~--~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTIE--GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEEEEEET--TSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcceeeEEec--cCCCCcEEEEecCCCC
Confidence 9999999999 8887764 4566778899999985
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.91 E-value=3.4e-22 Score=165.52 Aligned_cols=246 Identities=9% Similarity=0.052 Sum_probs=162.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCC-CcceeeEecCc-ccceeEEEEecCCCE--EEEec-------------CC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPY-RNLLLKTYGGH-AHEVNDATAACDSSQ--IASGA-------------SD 76 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d 76 (341)
..+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+|++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 468899999999999998887 99999987 67654433211 123556899999994 55554 68
Q ss_pred CcEEEEECC-CCceeeeec----ccCccEEEEEEcCCCcEEEEecC-CCeEEEEEec-CCCCcCeEEeecCCCceEEEee
Q psy17863 77 KSVILWEVT-TGQPVRRWR----EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVK-SRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 77 g~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
|.+.+|++. +++....+. .+...+.+++|+|+|++|+++.. ++.|.+|++. +++.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------------------ 180 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------------ 180 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------------
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------------------
Confidence 999999997 466544433 24567899999999998887653 5788888876 3320
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST- 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 228 (341)
.. ...+.... +...+..++|+|+|+++++++.
T Consensus 181 -----~~--------~~~~~~~~----------------------------------~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 181 -----EL--------VGSVDAPD----------------------------------PGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp -----EE--------EEEEECSS----------------------------------TTCCEEEEEECTTSSEEEEEETT
T ss_pred -----EE--------eeeEecCC----------------------------------CCCCCCEeEECCCCCEEEEEECC
Confidence 00 00000000 0223566777778777776654
Q ss_pred CCeEEEEecc--cccee---e---eecC----ccc------ceeEEEEE-eCCCCCEEEEecCCC------cEEEEeee-
Q psy17863 229 DECLRLFDKA--TGELL---E---EYKG----HKS------GDFRIECC-LDSKDSQIFCGSSDG------KIYKWQLV- 282 (341)
Q Consensus 229 d~~i~i~d~~--~~~~~---~---~~~~----~~~------~~~~~~~~-~~~~~~~l~~~~~dg------~i~iwd~~- 282 (341)
++.|.+|++. +++.. . .+.. |.. .+..+ + ++|+|++|+++..+. .|.+|++.
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i--~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV--CALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE--EEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE--EEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 6788888754 44432 1 1211 111 23344 8 999999988765432 89999996
Q ss_pred CCCceEEEE-eeeeccceEEEEEcC---CCcEEEEeC--CCcEEEEEcccc
Q psy17863 283 DSSQISTLI-HSVGKAVVNSLCSHP---TRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 283 ~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+++...... ...+...+..++|+| ||++|++++ ++.|++|+++.+
T Consensus 292 ~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 555433211 112444577899999 899999988 489999998765
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.91 E-value=6e-23 Score=172.01 Aligned_cols=286 Identities=11% Similarity=0.010 Sum_probs=193.1
Q ss_pred EEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 16 IRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
+..++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7888999999998877543 4788899888775444333333333478999999999999989999999998876655
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEe-----eccCeEEEEEccCCcceee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG-----SSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~i~~~d~~~~~~~~~ 167 (341)
...+.. |+++++.|+....+....+|... ....+.+..++.. ..+..|.+||+.+++....
T Consensus 118 ~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~--------~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 118 YTVDEE------WKGYGTWVANSDCTKLVGIEILK--------RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EECCTT------EEEEEEEEECTTSSEEEEEEEEG--------GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred Eecccc------cCCCCCEEEeccCCccccccccc--------cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 554433 66778888887777666666531 1112223333322 3566899999987665433
Q ss_pred eEeeecCceEEEEEECC-CCceEEEeCC-------CceEEEEccccc-----C---CCCeEEEEEccCCCEEEEeecC--
Q psy17863 168 LIHSVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAEEDY-----G---QEPIVDACFTRDCQCILTCSTD-- 229 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~~~~-----~---~~~i~~~~~~~~~~~l~~~~~d-- 229 (341)
. .....+..+.|+| +++.++...+ ..|.+|+..... . ...+..++|+|+|+.|+..+.+
T Consensus 184 ~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 184 H---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp E---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred c---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 3 2345688999999 7876655432 357888875432 1 2247778999999988776544
Q ss_pred ---CeEEEEeccccceeeeecCcccceeEEEEEeCC-CCCEEEEec----------------CCCcEEEEeeeCCCceEE
Q psy17863 230 ---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGS----------------SDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 230 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~ 289 (341)
+.|++||+.+++........ . .. ..++| +|++++.++ .++.|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~-~-~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP-P-CS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC-S-EE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-E
T ss_pred CccceEEEEECCCCCeEEeeeCC-C-CC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-E
Confidence 45999999887654332211 1 12 37889 999888754 3478999998877653 3
Q ss_pred EEeeeecc-----------ceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 290 LIHSVGKA-----------VVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 290 ~~~~~~~~-----------~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+. .+.. .+..++|+|||+.|+.++ ++...+|.++-
T Consensus 335 l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 335 LC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp EE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cc--CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 44 2333 256789999999887766 66667776653
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=7e-22 Score=162.62 Aligned_cols=263 Identities=7% Similarity=0.011 Sum_probs=173.7
Q ss_pred EEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCc-----
Q psy17863 60 DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHH----- 132 (341)
Q Consensus 60 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~----- 132 (341)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+++..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 34677888899999999999999999999888776443 2577899999998654 5567899999998875421
Q ss_pred ----------CeEEeecCCCceEEEeecc------------CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 133 ----------PIQCCLDSKDSQIFCGSSD------------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 133 ----------~~~~~~~~~~~~~~~~~~~------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
+......+++..+++++.+ +.|.+||+.+++.............+.+++++|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 1222344455578877765 899999998865444333323334578899999999 55
Q ss_pred EeCCCceEEEEcccccC------CC-------------------------CeEEEEEccCCCEEEEeecC-CeEEEEecc
Q psy17863 191 SACGNNVKLWTAEEDYG------QE-------------------------PIVDACFTRDCQCILTCSTD-ECLRLFDKA 238 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~------~~-------------------------~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~ 238 (341)
+. ++.+.+||...... .. ....+++++++......... ..+..+|..
T Consensus 163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 44599999865430 00 22334444433211000000 111223444
Q ss_pred cccee-eeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-
Q psy17863 239 TGELL-EEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 315 (341)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 315 (341)
+++.. ..+..+......+ +++| ++++++++ ++.|++||+.+++.+..+. ....+.+++|+|++++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTG--LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp TCCEEEEEEEECSSCEEEE--EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSSSSCEEEESB
T ss_pred CCcEEecccccCCCcceee--EecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccceEECCCCCEEEEecC
Confidence 33321 1111123333444 8999 99999988 8899999999988877776 234578999999999888888
Q ss_pred CCcEEEEEcccccCCc
Q psy17863 316 GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~ 331 (341)
++.|++||+.+.....
T Consensus 315 ~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVK 330 (349)
T ss_dssp SSEEEEEETTTTEEEE
T ss_pred CCeEEEEeccccceee
Confidence 9999999998765443
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1e-22 Score=179.13 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=165.8
Q ss_pred cccceeEEEEecCCCEEEEecC-CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC---CCeEEEEEecCC
Q psy17863 54 HAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSR 129 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~ 129 (341)
+..+|.+++|+|||++|++++. ||++.||+++.++..+....+...+..++|+|| +.+++++. +....+|.+...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999666654443333368999999999 77777664 444556554431
Q ss_pred CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc--eEEEeCCCceEEEEccccc-
Q psy17863 130 SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNNVKLWTAEEDY- 206 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~- 206 (341)
. . +... .+... . .....+++|+++ .+++...+.+.+|++.+..
T Consensus 99 ~-----------------------------~-g~~~-~l~~~-~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~ 144 (582)
T 3o4h_A 99 R-----------------------------P-GEEQ-RLEAV-K--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGL 144 (582)
T ss_dssp S-----------------------------T-TCCE-ECTTS-C--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred C-----------------------------C-Cccc-cccCC-C--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence 0 0 0000 11000 1 122345666664 4555566777799887643
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecC----CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC--cEE
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTD----ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--KIY 277 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~ 277 (341)
...+..+++|+|||++++.++.+ +.|++||+.+++.. .+..|...+... +|+|||+.|+++..++ .|+
T Consensus 145 ~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~--~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 145 RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSA--SISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEE--EECTTSCEEEEEECSSCEEEE
T ss_pred EEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccc--eECCCCCEEEEccCCCeeEEE
Confidence 11111789999999999988877 78999999887754 667777766655 8999999999888888 899
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEE--------EcCCCcEEEEeC-CCcEEEEEc
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLC--------SHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+||+.+++.. .+. .+...+..++ |+|||.++++++ ++.+++|++
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999888776 554 5666666666 999998888888 999999998
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=182.51 Aligned_cols=259 Identities=12% Similarity=0.078 Sum_probs=183.2
Q ss_pred eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEEEcCCCcEEEEecC---------CCeEEEEEe
Q psy17863 59 NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVKFNEDSSVVISGSQ---------DNTVMMWDV 126 (341)
Q Consensus 59 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~ 126 (341)
..++|+|+++++++ +.|++|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 36799999965555 4699999999999988777765543 3889999999999998876 789999999
Q ss_pred cCCCC---cC----eEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecCce-----------------EEEEE
Q psy17863 127 KSRSH---HP----IQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV-----------------VNSLC 181 (341)
Q Consensus 127 ~~~~~---~~----~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~ 181 (341)
.+++. .. +....+++++ .++.+ .++.|++|++.+++........ .... ...++
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcccEE
Confidence 87654 22 2333444444 55555 5889999999887664332111 1111 14899
Q ss_pred ECCCCceEEEeCCC-----------------------------------ceEEEEccccc---------------CCCCe
Q psy17863 182 SHPTRKHIMSACGN-----------------------------------NVKLWTAEEDY---------------GQEPI 211 (341)
Q Consensus 182 ~~~~~~~~~~~~~~-----------------------------------~i~~~~~~~~~---------------~~~~i 211 (341)
|+|+|+.|+.+..+ .+.+||+.... +...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 99999999886521 67899987543 45568
Q ss_pred EEEEEccCCCEEEEeecC----CeEEEEe----ccccceeeee----cCccccee-----EEEEEeCCCCCEEEE--ecC
Q psy17863 212 VDACFTRDCQCILTCSTD----ECLRLFD----KATGELLEEY----KGHKSGDF-----RIECCLDSKDSQIFC--GSS 272 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~l~~--~~~ 272 (341)
..++|+||++++++.... ..|.+|| ..+++....+ .+|...+. .. .|+|+|+.++. ...
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP--VFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC--EECTTSSCEEEEEECT
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc--EECCCCCeEEEEEEcc
Confidence 999999998877764432 3488899 8888766555 35665554 44 79999996554 445
Q ss_pred CC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C-----CcEEEEEccc
Q psy17863 273 DG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEE 326 (341)
Q Consensus 273 dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~ 326 (341)
+| .|++||+.+++ ...+. .+...+..+.++ +++.|+..+ + +..++|.++.
T Consensus 334 ~g~~~l~~~~~~~~~-~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 334 DGYKHIHYIKDTVEN-AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TSCEEEEEESSCSTT-CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCceEEEEEECCCCc-eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 55 57777876665 44454 445567777777 777777666 6 7789998764
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.89 E-value=1.2e-19 Score=145.16 Aligned_cols=242 Identities=12% Similarity=0.194 Sum_probs=173.3
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec------CcccceeEEEEe-cCCCEEEEecC-CCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAA-CDSSQIASGAS-DKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~iw~ 83 (341)
|-..+.+++++++++++++...++.|.+||.. ++.+..+. .+...+..+++. ++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44679999999999988888889999999976 66666553 234568899995 67766666533 78999999
Q ss_pred CCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+++.+..+.. +...+..++++++++++++...++.|.+||..... +..+...
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------~~~~~~~-- 160 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-----------------------LHKFGCS-- 160 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------------------EEEEECT--
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-----------------------EEEeCCC--
Confidence 56777666642 34578999999999888877777888888743210 0000000
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
.....+..++++|+|+++++...++.|++||.. ++.
T Consensus 161 -------------------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 196 (286)
T 1q7f_A 161 -------------------------------------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQY 196 (286)
T ss_dssp -------------------------------------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCE
T ss_pred -------------------------------------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCE
Confidence 012235677788888877777778899999974 555
Q ss_pred eeeecCc--ccceeEEEEEeCCCCCEEEEecCCC-cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcE
Q psy17863 243 LEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 319 (341)
Q Consensus 243 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 319 (341)
+..+..+ ...+..+ +++++|+++++...++ .|.+|+ .+++.+..+........+.+++++|+|+++++..+++|
T Consensus 197 ~~~~~~~g~~~~p~~i--~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v 273 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGV--GINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRL 273 (286)
T ss_dssp EEEESCTTTSCSEEEE--EECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEE
T ss_pred EEEEccCCccCCCcEE--EECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeE
Confidence 5666433 2344555 8999999888887776 999999 46777777763222335789999999998777449999
Q ss_pred EEEEcccc
Q psy17863 320 KLWTAEED 327 (341)
Q Consensus 320 ~vw~~~~~ 327 (341)
++|++...
T Consensus 274 ~v~~~~~~ 281 (286)
T 1q7f_A 274 YIYRYVQL 281 (286)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998653
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.89 E-value=6.9e-20 Score=149.34 Aligned_cols=254 Identities=12% Similarity=0.128 Sum_probs=179.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCC------------------------CeEEEEcCCCcceeeEec-CcccceeEEEEecCC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSD------------------------KKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDS 67 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 67 (341)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+-.....++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888776 479999998888876664 344578899999999
Q ss_pred CEEEEecCCCcEEEEECCCCc-eeeee---------cccCccEEEEEEcC-CCcEEEEec-CCCeEEEEEecCCCCcCeE
Q psy17863 68 SQIASGASDKSVILWEVTTGQ-PVRRW---------REHASKVTCVKFNE-DSSVVISGS-QDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 135 (341)
+++++...++.|++|+..... .+..+ ..+......++++| ++.++++.+ .++.|++|+... .
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~----- 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K----- 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-----
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-----
Confidence 988888889999999975432 44444 23444688999999 788877776 688888888322 1
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEE
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC 215 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 215 (341)
....+....... .+ ..........++
T Consensus 177 ----------------------------~~~~~~~~g~~~-------~~-------------------~~~~~~~p~gia 202 (329)
T 3fvz_A 177 ----------------------------FVTQWGEESSGS-------SP-------------------RPGQFSVPHSLA 202 (329)
T ss_dssp ----------------------------EEEEECEECCSS-------SC-------------------CTTEESCEEEEE
T ss_pred ----------------------------EEEEeccCCCCC-------CC-------------------CCcccCCCcEEE
Confidence 000000000000 00 000012356778
Q ss_pred EccC-CCEEEEeecCCeEEEEeccccceeeeecC--cccceeEEEEEeCC------CCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 216 FTRD-CQCILTCSTDECLRLFDKATGELLEEYKG--HKSGDFRIECCLDS------KDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 216 ~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
++|+ +.++++...++.|++||..+++.+..+.. +...+..+ +++| +++..++...+..|++|+..+++.
T Consensus 203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI--SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE--EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee--eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE
Confidence 8887 67777777889999999988888887743 34445544 6777 333333444566899999999998
Q ss_pred eEEEEe-eeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 287 ISTLIH-SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 287 ~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+..+.. ..+...+..++++|+|.++++.. +++|++|+++...
T Consensus 281 ~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 281 IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 887731 14556789999999998888888 9999999987654
No 167
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=8.1e-19 Score=144.29 Aligned_cols=222 Identities=9% Similarity=0.086 Sum_probs=145.9
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCC-c--ceeeEecC---------cccceeEEEEecCCCEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYR-N--LLLKTYGG---------HAHEVNDATAACDSSQIA 71 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~ 71 (341)
.+..+..|...+..++|+|||++|++++ .++.|.+|++.. + +.+..+.. +...+.+++|+|++++++
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 4455566888899999999999888887 689999999863 2 23333321 122488899999999666
Q ss_pred EecCCCcEEEEECC-CCceee--eecc-cCccEEEEEEcCCCcEEEE-ecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 72 SGASDKSVILWEVT-TGQPVR--RWRE-HASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 72 ~~~~dg~i~iw~~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+...++.|.+|++. +++... .+.. ....+..++|+|+|+++++ ...++.+.+|++....
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~---------------- 220 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT---------------- 220 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT----------------
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC----------------
Confidence 66778899999998 454322 2222 2336788999999996665 5667888888876421
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-E
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-T 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~ 225 (341)
+.+.. +..+...+.+ ......+..++|+|+|++|+ +
T Consensus 221 -----g~~~~--------------------~~~~~~~~~~------------------~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 221 -----GAFTQ--------------------LGIVKTIPAD------------------YTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp -----TEEEE--------------------EEEEESSCTT------------------CCSCCEEEEEEECTTSCEEEEE
T ss_pred -----CceEE--------------------eeeeeecCCC------------------CCCCCcceeEEECCCCCEEEEE
Confidence 01000 0000000000 00113466788888888774 4
Q ss_pred eecCCeEEEEecccc---ceeeeecCcccceeEEEEEeCCCCCEEEEecC-CCcEEEEee--eCCCce
Q psy17863 226 CSTDECLRLFDKATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQL--VDSSQI 287 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~ 287 (341)
...++.|.+|++... +.+..+..+...+..+ +|+|+|++|++++. ++.|.+|++ .+++..
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDF--DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeE--EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 556889999998632 4455555555555556 89999998887765 489999955 445543
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=2.7e-20 Score=166.30 Aligned_cols=286 Identities=11% Similarity=-0.006 Sum_probs=187.2
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEE--eCCCeEEEEcCCCcceeeEecCccccee---------EEEEe--cCCCE-EEEe
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTC--GSDKKIKLWNPYRNLLLKTYGGHAHEVN---------DATAA--CDSSQ-IASG 73 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~ 73 (341)
.+.+|...+..++|++++-++++. +.++...||....+.....+..+...+. ...|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456789999999999887677776 5588999998655555666766766666 66666 99998 7765
Q ss_pred cC-CCcEEEEECC--C-Cceeeeecc-----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCce
Q psy17863 74 AS-DKSVILWEVT--T-GQPVRRWRE-----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQ 144 (341)
Q Consensus 74 ~~-dg~i~iw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 144 (341)
+. +..|.++++. . ++ ...+.. |...+..++|+|||+.|++++.+.. ... +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~-------~~~----------~--- 156 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT-------GEG----------P--- 156 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC-------SSS----------T---
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEeccc-------CCC----------C---
Confidence 54 5667777765 2 33 444544 6678899999999999998876510 000 0
Q ss_pred EEEeeccCeEEEEEccC------CcceeeeEeeecCceEEEEEECCCCceEEEeC-C--------CceEEEEcc-cc---
Q psy17863 145 IFCGSSDGKIYKWQLVD------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G--------NNVKLWTAE-ED--- 205 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~i~~~~~~-~~--- 205 (341)
......|++||+.+ ++. ..+. ..+...+..++|+|+|+.|+... + ..|.+|++. ..
T Consensus 157 ---~~~~~~i~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 157 ---SDVRRFLAAVPLDGSAAADRSAV-RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp ---TCEEEEEEEEETTSTTTTCGGGS-EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred ---CCceeEEEEEECCCCccccCCce-eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 01113455555544 222 1221 01234567789999999988654 2 369999987 33
Q ss_pred c-------CCCCeEEEEEccCCCEEEEeecCC--eEEEEeccccceeeeecCcccc--------eeEEEEEeCCCCCEEE
Q psy17863 206 Y-------GQEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGELLEEYKGHKSG--------DFRIECCLDSKDSQIF 268 (341)
Q Consensus 206 ~-------~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~ 268 (341)
. +...+..+.|+|||++++++..++ .|.+||+.+++.......+... +.. +++++++++++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~--~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW--FAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS--EEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce--EeEeCCCEEEE
Confidence 1 357788999999999888888888 6777777666654433333221 222 37889999999
Q ss_pred EecCCCcEEEEeeeC-CCceEEEEeeeeccceEEE-EEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 269 CGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSL-CSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
++.. +.++||.+.. +..+..+. .+...+..+ +++++.-++++++ +....+|.+
T Consensus 310 ~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 9998 9999995542 33456665 566677777 5554444444445 554455543
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.87 E-value=4.8e-18 Score=146.87 Aligned_cols=306 Identities=11% Similarity=0.093 Sum_probs=212.2
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC--CCceeeeecccCccE
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--TGQPVRRWREHASKV 100 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v 100 (341)
|.+.++++...++.|.++|..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 44556677778999999999999999888743 356789999999999999999999999995 77888777653 346
Q ss_pred EEEEEc----CCCcEEEEecC-CCeEEEEEecCCCCcCeE-------------------EeecCC--CceEEEeeccCeE
Q psy17863 101 TCVKFN----EDSSVVISGSQ-DNTVMMWDVKSRSHHPIQ-------------------CCLDSK--DSQIFCGSSDGKI 154 (341)
Q Consensus 101 ~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~g~i 154 (341)
..++|+ |||++++++.. ++.+.++|..+.+..... .+..++ ...++.....|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69998887765 589999997765421111 111111 2244455567889
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------------CCCCeEEEEEccCC
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------GQEPIVDACFTRDC 220 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------~~~~i~~~~~~~~~ 220 (341)
.++|....+.+..... ........+.|+|++++++++. ++.|.++|..+.. |...-.. -++|++
T Consensus 323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~ 400 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTF 400 (567)
T ss_dssp EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTT
T ss_pred EEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCC
Confidence 9999877654332222 2234567889999999987765 4789999987643 1111111 257875
Q ss_pred CEE-EEee-cCCeEEEEeccc-------cceeeeecCcccceeEEEEEeCCCCCEEEEecC-------CCcEEEEeeeCC
Q psy17863 221 QCI-LTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-------DGKIYKWQLVDS 284 (341)
Q Consensus 221 ~~l-~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~ 284 (341)
..+ +++. .++.|.++|..+ .+.++++......-..+ ..+|+++++++... .++|.++|+.+.
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i--~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI--KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE--EeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 444 4443 468999999887 56777776543332223 68999999888653 459999999877
Q ss_pred -----Cce-EEEEee------eeccceEEEEEcCCCcEEEEe--C----CCcEEEEEcccccCCccce
Q psy17863 285 -----SQI-STLIHS------VGKAVVNSLCSHPTRKHIMSA--C----GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 285 -----~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~~--~----d~~i~vw~~~~~~~~~~~~ 334 (341)
... ..+... .....+..+.|+|+|+.+..+ + ++.|.|+|..+....+.+.
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 222 233210 123578899999999987766 2 5889999988876555544
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.87 E-value=2.4e-19 Score=146.57 Aligned_cols=271 Identities=10% Similarity=0.122 Sum_probs=187.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
...|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||.++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3567889999998888877888999999 4456666777777789999999999888888899999999988876554
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCC----CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
...+...+.+++++++++++++...+ +.|.+||.+++... ..+
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---------------------------------~~~ 128 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---------------------------------DII 128 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE---------------------------------EEE
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---------------------------------EEE
Confidence 44466789999999999888777665 57777776654311 000
Q ss_pred EeeecCceEEEEEECCCCceEEEeCC-------CceEEEEccccc------CCCCeEEEEEccCCCEEE-EeecCCeEEE
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACG-------NNVKLWTAEEDY------GQEPIVDACFTRDCQCIL-TCSTDECLRL 234 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~-~~~~d~~i~i 234 (341)
........+..++++|+++++++... +.+..++..... .......++|+|+++.++ +.+.++.|.+
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 00001234778889999888777653 345555443221 123467899999998665 4456789999
Q ss_pred Eeccc-cceeee--------ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc------ce
Q psy17863 235 FDKAT-GELLEE--------YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA------VV 299 (341)
Q Consensus 235 ~d~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~v 299 (341)
||..+ +..+.. +.++ ..+..+ +++++|+++++...++.|.+||. +++.+..+. .+.. .+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i--~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~--~~~~~~g~~~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSC--CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL--IPGRDEGHMLRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEE--EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE--CTTGGGTCSCBC
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCce--EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE--cCCCccccccCc
Confidence 99863 332221 1122 233344 88999988888777899999997 566666665 2222 68
Q ss_pred EEEEEcCCCcEEEEeC-CC----cEEEEEcc
Q psy17863 300 NSLCSHPTRKHIMSAC-GN----NVKLWTAE 325 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~----~i~vw~~~ 325 (341)
.+++|+||++.|+.++ ++ .-.||.++
T Consensus 283 ~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 283 THPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 9999999987776655 53 24455544
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.86 E-value=1.4e-18 Score=142.86 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=176.5
Q ss_pred CcEEEEEEccCCCEEEEEe---------CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---C--cE
Q psy17863 14 GAIRAVRFNVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---K--SV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i 79 (341)
..+..+++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+|||++|+..+.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 46778888 898887642 2578999999887643 33 568889999999999887653 2 48
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
.+|++.+++....... .. +..++|+|+++.|+.++.+.. .......+.......++.-........|.+||+
T Consensus 88 ~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRR------EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCC------C---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCC------CcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 8889888776554443 34 999999999999988765420 000000011111111111111123467889998
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-------C-ceEEEEccccc-----CCCCeEEEEEccCCCEEEEe
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-------N-NVKLWTAEEDY-----GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~ 226 (341)
.+++....+.. . .+..+.|+|++ +++++.. . ...+|.+.... ....+. .++|+|+.|+..
T Consensus 160 ~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~--~~spdg~~l~~~ 232 (347)
T 2gop_A 160 ESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFY--AVDSDGERILLY 232 (347)
T ss_dssp TTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEEESEE--EEEECSSCEEEE
T ss_pred CCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccCccee--eECCCCCEEEEE
Confidence 87765344433 2 57788999999 6666532 1 33555443211 012333 349999988877
Q ss_pred ecC--------CeEEEEeccccceeeeecCcccceeE-EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 227 STD--------ECLRLFDKATGELLEEYKGHKSGDFR-IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 227 ~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
+.+ ..|.+|| +++.......+...+.. + .|+ ++ ++++++.++.+++| +.+++. ..+. .+..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~--~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~--~~~~ 302 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAK--IKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIA--KGRH 302 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEE--EET-TE-EEEEEEETTEEEEE-EESSSE-EEEE--CSSS
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCcc--EEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEe--cCCC
Confidence 644 3688888 56555445555555553 4 688 88 88999999999999 886554 3443 4577
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcE-EEEEcc
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNV-KLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i-~vw~~~ 325 (341)
.|.+++|+| .++++++ ++.. .+|.++
T Consensus 303 ~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 303 WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 899999999 5666655 5554 788775
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=9.1e-19 Score=144.30 Aligned_cols=254 Identities=11% Similarity=0.111 Sum_probs=177.0
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeC----------CCeEEEEcCCCcceeeEecCc------ccceeEEEEecCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDS 67 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~ 67 (341)
+.+.++..+..+ .++|+|||+++++++. ++.|.+||..+++.+.++... ......++++|||
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg 119 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG 119 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC
Confidence 445666666655 8999999999998863 678999999998888877532 2456779999999
Q ss_pred CEEEEecC--CCcEEEEECCCCceeee-ecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecC-CCCc----------
Q psy17863 68 SQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKS-RSHH---------- 132 (341)
Q Consensus 68 ~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-~~~~---------- 132 (341)
++|+++.. +++|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++..
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 99998864 58899999999988877 6532 2 2335567754 6777888899999888864 2211
Q ss_pred ----CeEEeecCCCceEEEeeccCeEEEEEccCCccee--eeEeee----c----CceEEEEEECCCCceEEEeC-----
Q psy17863 133 ----PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--TLIHSV----G----KAVVNSLCSHPTRKHIMSAC----- 193 (341)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~~~----~----~~~~~~~~~~~~~~~~~~~~----- 193 (341)
+........+..++..+.++.+.++|+....... .+.... . ......++++|+++.+++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 0000111223355666678999999987544221 111000 0 00111368899988777653
Q ss_pred -------CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc--ceeeeecCcccceeEEEE
Q psy17863 194 -------GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 194 -------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~ 258 (341)
.+.+.+||..+.. ... ...++|+|+|++|++++. +.|.+||..++ +.+..+..+......+
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~-- 353 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV-- 353 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE--
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE--
Confidence 2479999987654 223 899999999999998887 99999999999 8888875555544555
Q ss_pred EeCCCCC
Q psy17863 259 CLDSKDS 265 (341)
Q Consensus 259 ~~~~~~~ 265 (341)
+++|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 7889875
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1e-19 Score=151.99 Aligned_cols=257 Identities=7% Similarity=0.004 Sum_probs=164.5
Q ss_pred EEEcCCCcceeeEecCcccceeE-----EEEecCCCEEEEecC-CC--cEEEEECCCCceeeeecccCccEEEEEEcCCC
Q psy17863 38 KLWNPYRNLLLKTYGGHAHEVND-----ATAACDSSQIASGAS-DK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (341)
..++..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+....|+||+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 44577788888888877766655 889999999998887 66 48889999988877776666666577899999
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.|+.++.++.|.+||+.+++...+. .. +..... .....++|+++.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~--~~-~~~~~~------------------------------~~~~~~~~dg~~l 139 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVY--QV-PAEWVG------------------------------YGTWVANSDCTKL 139 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEE--EC-CTTEEE------------------------------EEEEEECTTSSEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeee--ec-hhhccc------------------------------ccceeECCCCCee
Confidence 99999998999999999876522111 11 111000 0111123444443
Q ss_pred EEe-----------------------CCCceEEEEccccc------CCCCeEEEEEcc-CCCEEEEeecC------CeEE
Q psy17863 190 MSA-----------------------CGNNVKLWTAEEDY------GQEPIVDACFTR-DCQCILTCSTD------ECLR 233 (341)
Q Consensus 190 ~~~-----------------------~~~~i~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------~~i~ 233 (341)
+.. ....|.+|++.... +...+..+.|+| ||+.|+....+ ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 321 12456666665433 345678999999 99988877653 3688
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC-C----CcEEEEeeeCCCceEEEEeeeecc---ceEEEEEc
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-D----GKIYKWQLVDSSQISTLIHSVGKA---VVNSLCSH 305 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~ 305 (341)
++|...++. ..+..+.........+|+|+|+.|+..+. + +.|++||+.+++.........+.. ....++|+
T Consensus 220 ~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 220 LINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMV 298 (388)
T ss_dssp EEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEE
T ss_pred EEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEc
Confidence 888765543 34443432222233489999997765432 2 249999998887533222111111 01223799
Q ss_pred CCCcEEEEe---------C-CCcEEEEEccccc
Q psy17863 306 PTRKHIMSA---------C-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~~~l~~~---------~-d~~i~vw~~~~~~ 328 (341)
|||+.|+.. . +..|++|++.++.
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 999988853 4 6689999998754
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.84 E-value=1.2e-17 Score=134.11 Aligned_cols=262 Identities=8% Similarity=-0.001 Sum_probs=168.1
Q ss_pred eeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+++++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 3456666777889999999998 7788888999999998876 566766778899999999999888877778999999
Q ss_pred CCCCceeeeeccc----CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 84 VTTGQPVRRWREH----ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 84 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
..+++........ ...+..++++|+|+++++....|....+...... . ....+.|..++.
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~-------~---------~~~~~~l~~~~~ 160 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE-------M---------ELPGRWVFRLAP 160 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC-------C---------CSSSCEEEEECT
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc-------c---------cCCCcEEEEECC
Confidence 9888754433221 2345678999999887773321110000000000 0 000122222222
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc-
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA- 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~- 238 (341)
. + ....+.. .......++|+|+++.+++.+.++.|++|++.
T Consensus 161 ~-g-~~~~~~~------------------------------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 161 D-G-TLSAPIR------------------------------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp T-S-CEEEEEC------------------------------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred C-C-CEEEeec------------------------------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 2 1 1111100 12234567777888777666677888888876
Q ss_pred ccce---eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE-cCCCcEEEEe
Q psy17863 239 TGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS-HPTRKHIMSA 314 (341)
Q Consensus 239 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~ 314 (341)
+++. ...+..+...+..+ +++++|++.++. ++.|.+|+.. ++.+..+. .+.. +++++| +|+++.|+++
T Consensus 203 ~g~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 203 RGETEYQGVHFTVEPGKTDGL--RVDAGGLIWASA--GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp SSCEEEEEEEECCSSSCCCSE--EEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEE
T ss_pred CCcCcCCCeEeeCCCCCCCeE--EECCCCCEEEEc--CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEE
Confidence 4443 22332233333444 889999876666 7889999974 77777776 4555 899999 5899988888
Q ss_pred CCCcEEEEEcccccCC
Q psy17863 315 CGNNVKLWTAEEDYGQ 330 (341)
Q Consensus 315 ~d~~i~vw~~~~~~~~ 330 (341)
+.+.+.-++..++..+
T Consensus 275 t~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 275 VSTEFWSIETNVRGLE 290 (296)
T ss_dssp ETTEEEEEECSCCBCC
T ss_pred cCCeEEEEEccccccc
Confidence 8444555555554443
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=3.3e-19 Score=160.94 Aligned_cols=263 Identities=7% Similarity=-0.014 Sum_probs=176.8
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc-----EEEEEEcCCCcEEEEecCC---------CeE
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-----VTCVKFNEDSSVVISGSQD---------NTV 121 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i 121 (341)
....++.|+||+++++++ |++|++||+.+++....+..|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999987777766532 2447899999999998876 566
Q ss_pred EEEEecCCCC-------cCeEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecCc-----------------e
Q psy17863 122 MMWDVKSRSH-------HPIQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA-----------------V 176 (341)
Q Consensus 122 ~iwd~~~~~~-------~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~-----------------~ 176 (341)
.+||+.+++. .......+++++ .++.+ .++.|++|++.+++..+... ..... .
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCC
Confidence 7999987642 223444455554 55555 67999999998876543221 11111 1
Q ss_pred EEEEEECCCCceEEEeC--CCceEEEEccccc----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc---cc--eeee
Q psy17863 177 VNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY----GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT---GE--LLEE 245 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~--~~~~ 245 (341)
...+.|+|||+.|+... +..+.+|++.... +......+.+.+.|.. .....|++||+.+ ++ ....
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEE
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEE
Confidence 23589999999988875 3557888765432 3345667777776642 2233689999998 73 2223
Q ss_pred ec------CcccceeEEEEEeCCCCCEEEEec----CCCcEEEEeeeCCC----c--eEEEEeeeeccceE-----EEEE
Q psy17863 246 YK------GHKSGDFRIECCLDSKDSQIFCGS----SDGKIYKWQLVDSS----Q--ISTLIHSVGKAVVN-----SLCS 304 (341)
Q Consensus 246 ~~------~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~--~~~~~~~~~~~~v~-----~~~~ 304 (341)
+. ++...+..+ +|+|||+.++... .+..|++||+.+++ + +..+....+...|. .+.|
T Consensus 249 l~~~~~~~~~~~~~~~~--~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDV--TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp ECCCHHHHTSCEEEEEE--EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred ecCCccCCCCCeEEEEE--EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 33 255555555 8999999666543 34579999999987 1 22232124554444 7889
Q ss_pred cCCCcEEE-EeC--CC--cEEEEEccccc
Q psy17863 305 HPTRKHIM-SAC--GN--NVKLWTAEEDY 328 (341)
Q Consensus 305 ~~~~~~l~-~~~--d~--~i~vw~~~~~~ 328 (341)
+|||+.|+ ..+ +| .|++|++.++.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 99999877 554 44 57778876543
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.84 E-value=1.1e-17 Score=132.36 Aligned_cols=221 Identities=10% Similarity=0.067 Sum_probs=165.0
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc-CccEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVT 101 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~ 101 (341)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998766 4789999999999888 34678999998 89999988865 35788
Q ss_pred EEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
++.+.++|+.+++.+. ++.+..+|.. ++ .+.-+.+.....
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk----------------------~l~~~~~~~~~~---------------- 121 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMK-GE----------------------VLSKTEFETGIE---------------- 121 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTT-SC----------------------EEEEEEECCSCS----------------
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCC-CC----------------------EEEEEeccCCCC----------------
Confidence 9999999999998776 5555555532 11 011111110000
Q ss_pred EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe
Q psy17863 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 260 (341)
........+++.++|+++++...++.|..||.+ |+.+.++..... .... ..
T Consensus 122 -------------------------~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~--~~ 172 (276)
T 3no2_A 122 -------------------------RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-PFSS--AF 172 (276)
T ss_dssp -------------------------SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-CCEE--EE
T ss_pred -------------------------cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-ccce--eE
Confidence 001123344678889999999999999999998 999888876533 3334 67
Q ss_pred CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee----eccceEEEEEcCCCcEEEEeC
Q psy17863 261 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.++++.++++..++.|..+|..+++.+.++.... ....+..++..++|.++++..
T Consensus 173 ~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 173 LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 7899999999989999999998899999887211 112378888899999888873
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.83 E-value=9.3e-16 Score=123.17 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=188.3
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+..+...+.++++.++|+++++...++.|.+||.. ++.... +..+...+..+++.+++.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44556789999999999988776668899999987 543322 22345678999999999988887778889999976 4
Q ss_pred cee-eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 88 QPV-RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 88 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
+.. ..+......+..+++.+++.++++...++.|..||. +++ +..+...
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----------------------~~~~~~~------ 137 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----------------------IREYELP------ 137 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----------------------EEEEECS------
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----------------------EEEecCC------
Confidence 321 122224557889999999988887777788888876 322 1111100
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.....+..+++.+++...++... +.+..|+..... ....+..++++++|+++++...++.|.+||.
T Consensus 138 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 138 -----NKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred -----CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-
Confidence 01234677888888877776653 677777762211 2345788999999997777667889999998
Q ss_pred ccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCC
Q psy17863 239 TGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 317 (341)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 317 (341)
+++.... ...+...+..+ +++++|++.++...++.|..||. +++ +..+....+...+.++++ +++.++++...+
T Consensus 212 ~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~ 286 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAI--TAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECD 286 (299)
T ss_dssp TCCEEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTT
T ss_pred CCcEEEEECCCCCCCceeE--EECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCC
Confidence 6654322 22233445555 88999987777667889999997 443 334332234467899999 999888776666
Q ss_pred cEEEEEcccc
Q psy17863 318 NVKLWTAEED 327 (341)
Q Consensus 318 ~i~vw~~~~~ 327 (341)
.+..++.+++
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 6777776654
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.83 E-value=9e-18 Score=150.95 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=162.6
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCC-----eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||.+..++ .|++||+.+++...... ....+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334688999999999999776543 89999999988765432 2223678999999999999887765
Q ss_pred --------EEEEECCCCcee----eeecccCccEEEEEEcCCCcEEEEecC-----CCeEEEEEecCCCCcCeEEeecCC
Q psy17863 79 --------VILWEVTTGQPV----RRWREHASKVTCVKFNEDSSVVISGSQ-----DNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 79 --------i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
|++|++.+++.. .....|...+..+.|+|||++|+..+. +..|.+||+.+....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~--------- 272 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG--------- 272 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS---------
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc---------
Confidence 999999887632 222334566889999999999887764 345555555431000
Q ss_pred CceEEEeeccCeEEEEEccCCc-ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
..+. ....+... ...+.. .|+|+|
T Consensus 273 ------------------~~~~~~~~~l~~~------------------------------------~~~~~~-~~s~dg 297 (710)
T 2xdw_A 273 ------------------ITGILKWVKLIDN------------------------------------FEGEYD-YVTNEG 297 (710)
T ss_dssp ------------------SCSSCCCEEEECS------------------------------------SSSCEE-EEEEET
T ss_pred ------------------cCCccceEEeeCC------------------------------------CCcEEE-EEeccC
Confidence 0011 11111110 011111 356666
Q ss_pred CEEEEeec----CCeEEEEeccccc--eeeeecCccc--ceeEEEEEeCCCCCEEEEecCCCc--EEEEeeeCCCceEEE
Q psy17863 221 QCILTCST----DECLRLFDKATGE--LLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGK--IYKWQLVDSSQISTL 290 (341)
Q Consensus 221 ~~l~~~~~----d~~i~i~d~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~ 290 (341)
+.|+..+. ++.|.+||+.++. ....+..+.. .+..+ ++++++.++++...++. |++|++.+++.+..+
T Consensus 298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV--ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE--EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 66655444 3469999988764 2344544543 34444 66677778888888885 555666577777777
Q ss_pred EeeeeccceEEEEEcCCCcEEEEe--C---CCcEEEEEccccc
Q psy17863 291 IHSVGKAVVNSLCSHPTRKHIMSA--C---GNNVKLWTAEEDY 328 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~~l~~~--~---d~~i~vw~~~~~~ 328 (341)
. .+...+..+.++|++..++.. + .+.|+.|++.++.
T Consensus 376 ~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 P--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp C--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6 557788999999998766533 2 4789999987654
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=3.2e-16 Score=128.01 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=159.9
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC----CcEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVI 80 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~ 80 (341)
....+..+...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++|+++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445666677788999999999988888889999999998877655444566789999999999888877666 6899
Q ss_pred EEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCC------CeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 81 LWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 81 iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
+||.++++....+. .+...+.+++++|+++++++...+ +.|..+|..+
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~------------------------ 171 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF------------------------ 171 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS------------------------
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC------------------------
Confidence 99988776543332 244578999999999877765532 2233332221
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc---------------CCCCeEEEE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY---------------GQEPIVDAC 215 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~---------------~~~~i~~~~ 215 (341)
.+. ..+.. ....+..++++|+++.++.+. ++.|.+|+..... ....+..++
T Consensus 172 ---------~~~-~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 172 ---------RTV-TPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp ---------CCE-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred ---------CEE-EEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 111 11111 112367889999988655443 4788888874311 012567799
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCccc------ceeEEEEEeCCCCCEEEEecCCC
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS------GDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
++++|+++++...++.|.+||. +++.+..+..+.. .+..+ +++++++.|+.++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~--~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP--QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE--EECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceE--EECCCCCEEEEEeCcc
Confidence 9999998888777899999998 4666666654432 45555 7789987777665553
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.81 E-value=1.6e-17 Score=135.07 Aligned_cols=281 Identities=11% Similarity=0.075 Sum_probs=199.7
Q ss_pred EEEccCCCEEEEEeC-----CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEE
Q psy17863 19 VRFNVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWE 83 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~ 83 (341)
....|+++.+.+... ++.|.+.|..+++.+.++.....+ . ++++||+++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998887765 679999999999999998765555 4 99999999988775 357899999
Q ss_pred CCCCceeeeecccC-------ccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeE------EeecCCCceEEEe
Q psy17863 84 VTTGQPVRRWREHA-------SKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQ------CCLDSKDSQIFCG 148 (341)
Q Consensus 84 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~ 148 (341)
..+++.+..+.-.. .....++|+|||++++.+.. ++.|.++|+.+.+..... .........+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99999888775321 23457899999999988864 689999999987632111 1111223466788
Q ss_pred eccCeEEEEEccC-CcceeeeEee--ecCceE-EEEEE-CCCCceEEEeCCCceEEEEccccc-----------------
Q psy17863 149 SSDGKIYKWQLVD-SSQISTLIHS--VGKAVV-NSLCS-HPTRKHIMSACGNNVKLWTAEEDY----------------- 206 (341)
Q Consensus 149 ~~~g~i~~~d~~~-~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----------------- 206 (341)
+.||++.+.++.. ++........ .....+ ....| .++|++++...++.+.+.|.....
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 8999999999976 4432211100 011111 12344 478888888888999999986542
Q ss_pred --CCCCeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEe-cC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCG-SS 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~ 272 (341)
.......++++++++.+++... .+.|.++|+.+++.++.+.... .+..+ ++++|++ +|++. ..
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~l--avs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI--NVSQDEKPLLYALSTG 352 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECSSSSCEEEEEETT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceE--EECCCCCeEEEEEcCC
Confidence 1123345788999988887643 2579999999999988886432 44555 8999997 66664 56
Q ss_pred CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
++.|.++|..+++.+.++...+| -+.|.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence 89999999999999999874333 445566666
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.81 E-value=6.7e-17 Score=127.97 Aligned_cols=240 Identities=8% Similarity=0.032 Sum_probs=161.0
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 15 AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 678999999999777 546788999999765543322223345678899999998666655 88999999865543 333
Q ss_pred c-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 94 R-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 94 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
. .....+..++++++++++++...++.|.+|+..+... .... .
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------------------------------~~~~--~- 146 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---------------------------------TVLP--F- 146 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---------------------------------EECC--C-
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---------------------------------Eeec--c-
Confidence 2 2335688999999988777766677777775432210 0000 0
Q ss_pred cCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
. ....+..++++++|+++++...++.|.+||............+...
T Consensus 147 ~---------------------------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (270)
T 1rwi_B 147 T---------------------------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 193 (270)
T ss_dssp C---------------------------------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred c---------------------------------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCC
Confidence 0 0123455677888876666666788999998765543332223234
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
...+ +++++|.++++...++.|.+|+...... ..... .+...+.+++++++|+++++.. ++.|+++++.....
T Consensus 194 p~~i--~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 194 PWGI--AVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEE--EECTTCCEEEEETTTSCEEEECTTCSCC-EECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceEE--EECCCCCEEEEECCCCcEEEEcCCCCcc-eeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 4455 8899997777777889999999755433 22221 2335689999999999888888 99999999987654
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=6.2e-19 Score=147.58 Aligned_cols=266 Identities=9% Similarity=-0.026 Sum_probs=167.4
Q ss_pred EEEcCCCcceeeEecCcccc-----eeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCC
Q psy17863 38 KLWNPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (341)
...|..+++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 45577888777777655433 7788999999998776443 468889998887654433333223347899999
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeec---CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.|+.++.++.|.+||+.+++...+..... +.+..++....++...+|. ....++|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-------------------~~~~~spdg 153 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEI-------------------LKRDWQPLT 153 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE-------------------EGGGCCCCC
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccc-------------------cccccCCCC
Confidence 999999999999999998765322211110 0111122222222211111 123467887
Q ss_pred ceEEEe------CCCceEEEEccccc------CCCCeEEEEEcc-CCCEEEEeecC------CeEEEEeccccceeeeec
Q psy17863 187 KHIMSA------CGNNVKLWTAEEDY------GQEPIVDACFTR-DCQCILTCSTD------ECLRLFDKATGELLEEYK 247 (341)
Q Consensus 187 ~~~~~~------~~~~i~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~ 247 (341)
+.++.. ....+.+|++.... +...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~ 232 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIK 232 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESS
T ss_pred cceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eee
Confidence 766543 23568888876533 345678899999 78877765543 36888888755433 333
Q ss_pred CcccceeEEEEEeCCCCCEEEEecCC-----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC------
Q psy17863 248 GHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC------ 315 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 315 (341)
.+.........+|+|+|++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-SEE-EEEECSSSSEEEEEECCC---
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-CCC-CCccCCCCceEEEecCCccee
Confidence 23211122234899999987776543 459999998876543322 11 123 88999 999888742
Q ss_pred -----------CCcEEEEEccccc
Q psy17863 316 -----------GNNVKLWTAEEDY 328 (341)
Q Consensus 316 -----------d~~i~vw~~~~~~ 328 (341)
+..|++|++.++.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp -------CCCCCCEEEEEETTTTB
T ss_pred eccccccccCCCCcEEEEecccCc
Confidence 3679999987654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.80 E-value=5e-18 Score=152.18 Aligned_cols=241 Identities=7% Similarity=-0.053 Sum_probs=155.8
Q ss_pred eeCCcEEEEEEccCCCEEE-----EEeCCCeEEEEcCCCcceeeEecCcccce--eEEEEecCCCEEEEecCCCc-----
Q psy17863 11 CKQGAIRAVRFNVDGSYCL-----TCGSDKKIKLWNPYRNLLLKTYGGHAHEV--NDATAACDSSQIASGASDKS----- 78 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~----- 78 (341)
+|...+..++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 3555799999999999999 34445789999999988651 1122222 67899999999999988776
Q ss_pred --------EEEEECCCCc----eeeeecccCccEEEEEEcCCCcEEEEecCCC----eEEEEEecCCCCcCeEEeecCCC
Q psy17863 79 --------VILWEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRSHHPIQCCLDSKD 142 (341)
Q Consensus 79 --------i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~ 142 (341)
|++|++.+++ .+.....+...+..+.|+|||++|+..+.++ .|.+|+..+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------------- 261 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------------- 261 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--------------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--------------
Confidence 9999998876 3333344556789999999999988877654 333332211
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
++ ...+... ........+ ++|.+
T Consensus 262 -------------------~~-~~~l~~~------------------------------------~~~~~~~~~-~~g~l 284 (695)
T 2bkl_A 262 -------------------KD-FRLLVKG------------------------------------VGAKYEVHA-WKDRF 284 (695)
T ss_dssp -------------------SS-CEEEEEC------------------------------------SSCCEEEEE-ETTEE
T ss_pred -------------------Cc-eEEeecC------------------------------------CCceEEEEe-cCCcE
Confidence 11 1111110 011122223 34442
Q ss_pred EEEee---cCCeEEEEeccccce--eeeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeee
Q psy17863 223 ILTCS---TDECLRLFDKATGEL--LEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSV 294 (341)
Q Consensus 223 l~~~~---~d~~i~i~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~ 294 (341)
++... .++.|.+||+.+++. ...+..+ ...+..+ +++ ++.++++...|+..++|.+. +++....+.. .
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~ 360 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV--SIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL-P 360 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE--EEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC-S
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC-C
Confidence 33332 357899999877653 2333333 3334444 555 67788899999999988776 4555555541 2
Q ss_pred eccceEEEEEcCCCcEEEE----eC-CCcEEEEEccccc
Q psy17863 295 GKAVVNSLCSHPTRKHIMS----AC-GNNVKLWTAEEDY 328 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~----~~-d~~i~vw~~~~~~ 328 (341)
....+..+.++|+++.++. .. .+.|++|++.++.
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2567888899999987762 23 5789999987653
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.80 E-value=5.6e-17 Score=131.94 Aligned_cols=248 Identities=9% Similarity=0.065 Sum_probs=168.2
Q ss_pred CCCeEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEc
Q psy17863 33 SDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106 (341)
Q Consensus 33 ~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 106 (341)
.++.|.++|.++++....+. ........+.+. +++.+++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999888765441 122345677774 45556666678999999999999988885 34667899998
Q ss_pred CCCcEEEEecCCCeEEEEEecCCCCc--------------CeEEeecCCCceEEEee--ccCeEEEEEccCCcceeeeEe
Q psy17863 107 EDSSVVISGSQDNTVMMWDVKSRSHH--------------PIQCCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 107 ~~~~~l~~~~~d~~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~g~i~~~d~~~~~~~~~~~~ 170 (341)
++++..++...++.|.+||+.+.+.. +..... .++.++++. .++.|.++|+.+.+....+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 88855555447899999998875421 111111 233444444 367777777776655443321
Q ss_pred eecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC----------CeEEEEecccc
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD----------ECLRLFDKATG 240 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~ 240 (341)
......++++|+|++++++..+ +.|.++|..++
T Consensus 171 -------------------------------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 171 -------------------------------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp -------------------------------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred -------------------------------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 1123456677777766666554 78999999988
Q ss_pred ceeeeecCcc-cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEe----
Q psy17863 241 ELLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSA---- 314 (341)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---- 314 (341)
+....+.... .....+ +++|+++.++++.. .|.+||..+++................++++| ++.++++.
T Consensus 214 ~v~~~~~~~~g~~p~~l--a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y 289 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEV--QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY 289 (328)
T ss_dssp EEEEEEECCTTCCCEEE--EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred eEEEEEecCCCCCceeE--EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence 8776665322 234455 89999999888765 89999998877532111001245688999999 67777776
Q ss_pred C-CCcEEEEEcc
Q psy17863 315 C-GNNVKLWTAE 325 (341)
Q Consensus 315 ~-d~~i~vw~~~ 325 (341)
. ++.|.+|+.+
T Consensus 290 ~~~~~V~v~d~~ 301 (328)
T 3dsm_A 290 QQQGIVYRYSPQ 301 (328)
T ss_dssp SSEEEEEEECTT
T ss_pred ccCCEEEEECCC
Confidence 6 8899999987
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=3e-17 Score=146.65 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=172.1
Q ss_pred eeEEeeeCCcEE---------EEEEc--cCCCE-EEEEeC-CCeEEEEcCC--CcceeeEecC-----cccceeEEEEec
Q psy17863 6 VQTIDCKQGAIR---------AVRFN--VDGSY-CLTCGS-DKKIKLWNPY--RNLLLKTYGG-----HAHEVNDATAAC 65 (341)
Q Consensus 6 ~~~l~~h~~~v~---------~~~~~--~~~~~-l~t~~~-dg~i~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~ 65 (341)
.+.+..|...+. ...|+ |||++ |+.++. +..|.++++. .......+.. |...+..++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 345555665655 56665 99998 776554 5677777765 2033455555 677899999999
Q ss_pred CCCEEEEecCC----------CcEEEEECCC------Cceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 66 DSSQIASGASD----------KSVILWEVTT------GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 66 ~~~~l~~~~~d----------g~i~iw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
||+.|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++...-|
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~---- 214 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW---- 214 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT----
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCC----
Confidence 99999988876 5899999987 544 4444 556778889999999999987755310000
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEcc-CCc--ceeeeEeeecCceEEEEEECCCCceEEEeCC-C--ceEEEEc
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV-DSS--QISTLIHSVGKAVVNSLCSHPTRKHIMSACG-N--NVKLWTA 202 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~~~~~ 202 (341)
....|.+||+. ++. ....+.. .....+..+.|+|++++++++.. + .|.+|+.
T Consensus 215 ---------------------~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 215 ---------------------EGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp ---------------------TCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred ---------------------CCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 01234444444 221 1122221 12356889999999996666653 4 4566655
Q ss_pred cccc------CCCC---------eEEEEEccCCCEEEEeecCCeEEEE--eccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 203 EEDY------GQEP---------IVDACFTRDCQCILTCSTDECLRLF--DKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 203 ~~~~------~~~~---------i~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
.... +... +..++|+|++++++++.. +.+++| |+.+++ +..+..+...+..+. +++.+.-
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~ 349 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATL-TVSGTRA 349 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEE-EEETTEE
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEE-ecCCCEE
Confidence 3321 1111 467889999999999988 999999 555444 567777765554331 3333333
Q ss_pred EEEEecCCCc--EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 266 QIFCGSSDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 266 ~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
++++++.+.. |+++|+.+++.. .+.. .+...+....+.+.....+.+. +..|..|-.
T Consensus 350 ~~~~~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 350 VGVAASPRTAYEVVELDTVTGRAR-TIGA-RHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTEEEEEEEEETTTCCEE-EEES-CCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCCCEEEEEECCCCceE-Eeec-CCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 3444555544 555555566543 3321 2333333333444444444444 345655554
No 186
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=8.4e-17 Score=133.13 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=137.0
Q ss_pred cEEEEEEccCCCE--EEEEe-------------CCCeEEEEcCC-CcceeeEec----CcccceeEEEEecCCCEEEEec
Q psy17863 15 AIRAVRFNVDGSY--CLTCG-------------SDKKIKLWNPY-RNLLLKTYG----GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 15 ~v~~~~~~~~~~~--l~t~~-------------~dg~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.+.+++|+|||++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|||++|+++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3566899999994 55553 68999999987 465544443 2456789999999999888765
Q ss_pred -CCCcEEEEECC-CCcee--eeec--ccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEE
Q psy17863 75 -SDKSVILWEVT-TGQPV--RRWR--EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFC 147 (341)
Q Consensus 75 -~dg~i~iw~~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (341)
.++.|.+|++. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++....
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~----------------- 226 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT----------------- 226 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-----------------
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-----------------
Confidence 46789999998 67643 2333 23567899999999998887764 6788888875321
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC------CeEEEE-EccCC
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE------PIVDAC-FTRDC 220 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~i~~~~-~~~~~ 220 (341)
|.+.. .. ..+...|.+. ..+.. .+..++ |+|||
T Consensus 227 ----g~~~~----------~~---------~~~~~~~~~~-----------------~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 227 ----HMPVY----------TH---------HSFPLIPPGI-----------------PDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp ----CCEEE----------EE---------EEEESSCTTC-----------------CCBCTTTSSBSEEEEEEEECTTS
T ss_pred ----CcEEE----------cc---------ceEEcCCCCc-----------------CCcccccccccccccEEEECCCC
Confidence 00000 00 0000000000 00000 356677 88888
Q ss_pred CEEEEeecCC------eEEEEecc-ccceee---eecCcccceeEEEEEeCC---CCCEEEEecCC-CcEEEEeeeCC
Q psy17863 221 QCILTCSTDE------CLRLFDKA-TGELLE---EYKGHKSGDFRIECCLDS---KDSQIFCGSSD-GKIYKWQLVDS 284 (341)
Q Consensus 221 ~~l~~~~~d~------~i~i~d~~-~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d-g~i~iwd~~~~ 284 (341)
++|+++..+. .|.+|++. +++... ....+......+ +++| +|++|++++.+ +.|.+|++...
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~--a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc--eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8777665432 89999986 555433 133333334444 7888 89999988764 89999998765
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.79 E-value=3.2e-15 Score=123.23 Aligned_cols=264 Identities=8% Similarity=-0.007 Sum_probs=180.8
Q ss_pred EEccCCCEEEEEeC--CC---eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEEC
Q psy17863 20 RFNVDGSYCLTCGS--DK---KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEV 84 (341)
Q Consensus 20 ~~~~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~ 84 (341)
...|+++++.+... .. .|.++|..+++.+.++.....+ .++++||+++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578887777653 22 8899999999988888755444 899999999999886 3678999999
Q ss_pred CCCceeeeeccc-------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCe-EE------eecCCCceEEEe
Q psy17863 85 TTGQPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPI-QC------CLDSKDSQIFCG 148 (341)
Q Consensus 85 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~------~~~~~~~~~~~~ 148 (341)
.+.+.+..+... ......++|+|||++|+.+.. ++.|.++| .+++.... .. ........+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLL 183 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEE
Confidence 988887766432 123457999999999998874 57899999 87653211 10 011122355667
Q ss_pred eccCeEEEEEccCCcceeeeEe---eecCce-EEEEEECCCC-ceEEEeCCCceEEEEccccc-----------------
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIH---SVGKAV-VNSLCSHPTR-KHIMSACGNNVKLWTAEEDY----------------- 206 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------------- 206 (341)
+.||.+.++|. +++....... ...... .....+.+++ .+++....+.+.+.|+....
T Consensus 184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence 78999999999 7665532210 011111 1223344443 33444455677777764321
Q ss_pred --CCCCeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEec-C
Q psy17863 207 --GQEPIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-S 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ 272 (341)
.......+.++|+++.+++... ++.|.++|..+++.+..+.... ....+ +++|||+ +++++. .
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i--~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAI--SVAQDGGPDLYALSAG 339 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeE--EECCCCCeEEEEEcCC
Confidence 1122344788999988887653 3579999999999988886433 34455 8999999 777776 5
Q ss_pred CCcEEEEeeeCCCceEEE
Q psy17863 273 DGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~ 290 (341)
++.|.++|..+++.+..+
T Consensus 340 ~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEECCCCCEEeee
Confidence 899999999999988874
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=3.2e-15 Score=129.32 Aligned_cols=286 Identities=10% Similarity=0.111 Sum_probs=194.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEe----cCCCEEEEecC-C
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAA----CDSSQIASGAS-D 76 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d 76 (341)
+.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+.++.... ....++|+ |||+++++++. +
T Consensus 188 ~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~ 265 (567)
T 1qks_A 188 EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP 265 (567)
T ss_dssp CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence 34555553 3356799999999999999999999999996 788888887543 45789999 69999888765 5
Q ss_pred CcEEEEECCCCceeeeecc----------cCc-cEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCC----------cCe
Q psy17863 77 KSVILWEVTTGQPVRRWRE----------HAS-KVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH----------HPI 134 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~----------~~~ 134 (341)
+++.++|..+.+.+..+.. |.. .+..+..++++. +++....+|.|.++|...... .+.
T Consensus 266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 345 (567)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence 9999999999988876642 222 577888888654 455566779999999865421 111
Q ss_pred EEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEe-eecCceEEEE-EECCCCc-eEEEe--CCCceEEEEcccccCC
Q psy17863 135 QCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSL-CSHPTRK-HIMSA--CGNNVKLWTAEEDYGQ 208 (341)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~ 208 (341)
...+.+++.+++++ ..++.|.++|+.+++....+.. .....+-... .++|++. ..++. .++.|.+++.....+.
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 22344455555554 4688999999999887666543 1111110111 2578744 44444 2478999998763321
Q ss_pred --------------CCeEEEEEccCCCEEEEeec-------CCeEEEEecccc-----cee-eeec-----Cc-ccceeE
Q psy17863 209 --------------EPIVDACFTRDCQCILTCST-------DECLRLFDKATG-----ELL-EEYK-----GH-KSGDFR 255 (341)
Q Consensus 209 --------------~~i~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~-----~~~-~~~~-----~~-~~~~~~ 255 (341)
..-..+..+|+++++.+... .+.|.++|+.+. ... ..+. +. ...-..
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 11133667999999988663 358999999876 211 2221 00 112234
Q ss_pred EEEEeCCCCCEEEEec-----CCCcEEEEeeeCCCceEEEE
Q psy17863 256 IECCLDSKDSQIFCGS-----SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~ 291 (341)
..+.|+++|+++..+. .++.|.|+|..+++.+..++
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 4558999999877663 37999999999998877776
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.76 E-value=8.8e-15 Score=118.40 Aligned_cols=258 Identities=9% Similarity=0.065 Sum_probs=158.4
Q ss_pred EeeeCCcEEEEEEccCCCEEEE-------EeCCCeEEEEcCCCcceeeEec----CcccceeEEEEecC-CCEEEEecCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLT-------CGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACD-SSQIASGASD 76 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d 76 (341)
+...-....+++|+++|+++++ +..++.|.+||..+++...... ++...+..++++++ ++++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999988887 5678999999987776543221 25567899999999 76555544 4
Q ss_pred CcEEEEECCCCceeee-ecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 77 KSVILWEVTTGQPVRR-WRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
+.|.+||.+ ++.... ... ....+.++++++++++.++...++.... +..... ....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~-~~~~~~-----------------~~~~ 152 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA-DYTRSM-----------------QEKF 152 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS-CCCBTT-----------------SSSC
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccc-cccccc-----------------cCCC
Confidence 469999988 665433 221 1235789999999987776654421000 000000 0011
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEc----cCCCEEEEe-
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFT----RDCQCILTC- 226 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~- 226 (341)
+.|..++.. ++. ..+... ......++++ |+++.++++
T Consensus 153 ~~l~~~~~~-g~~-~~~~~~------------------------------------~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 153 GSIYCFTTD-GQM-IQVDTA------------------------------------FQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp EEEEEECTT-SCE-EEEEEE------------------------------------ESSEEEEEEEECTTSCEEEEEEEE
T ss_pred CeEEEECCC-CCE-EEeccC------------------------------------CCCcceEEEecccCCCCCEEEEEE
Confidence 223333322 111 111000 0123445666 666544443
Q ss_pred ecCCeEEEEecc-ccc-----eeeeecCcc-cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 227 STDECLRLFDKA-TGE-----LLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 227 ~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
..++.|.+||.. +++ ....+..+. .....+ +++++|++.++...++.|.+||..+++.+..+. .+...+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM--DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE--EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce--EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCc
Confidence 456778888865 332 222333332 333444 889999888887788899999987777777766 455789
Q ss_pred EEEEEcCCCcEEE-EeC-CCcEEEEEccccc
Q psy17863 300 NSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 300 ~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~~ 328 (341)
.+++|+|+++.|. +.. ++.|..|++....
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9999999999554 444 7799999987543
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.76 E-value=4.4e-14 Score=113.41 Aligned_cols=270 Identities=9% Similarity=-0.006 Sum_probs=182.7
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee-EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
....+.++++.++|+++++...++.|.+||.. ++... .+......+..+++.++++++++...++.|..+|.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45688999999999988877778999999987 54432 223334678999999999888877778889999987 5543
Q ss_pred e-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 91 R-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 91 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
. ........+..+++.+++++.++...++.|..+|.. ++ +..+...
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----------------------~~~~~~~--------- 142 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----------------------IYEYDLP--------- 142 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----------------------EEEEECS---------
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----------------------EEEccCC---------
Confidence 2 222234678899999999887777667788877765 22 1111110
Q ss_pred eeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
.....+..+++.+++++.++.. ++.+..++.... .....+..++++++|+++++....+.|.+||. +++
T Consensus 143 --~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 143 --NKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp --STTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred --CCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 0123467788888888666655 366777766321 12345788999999987777666788999998 454
Q ss_pred eeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEE
Q psy17863 242 LLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 320 (341)
.... +..+...+..+ +++++|++.++...++.|..++. +++. ..+........+.+++++++|+++++... .|.
T Consensus 220 ~~~~~~~~~~~~~~~i--~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAI--TAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEEECCCCCCCceEE--EECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCCEEEEccC-ceE
Confidence 4332 22233344455 88999987777767789999997 4443 33332123456889999999987666544 565
Q ss_pred EEEc
Q psy17863 321 LWTA 324 (341)
Q Consensus 321 vw~~ 324 (341)
.++.
T Consensus 295 ~~~p 298 (300)
T 2qc5_A 295 KLNL 298 (300)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 5554
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.3e-15 Score=125.14 Aligned_cols=230 Identities=10% Similarity=0.113 Sum_probs=147.6
Q ss_pred CcEEEEEEccCCCEEEEEeCC---C--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC------------
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSD---K--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------------ 76 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~d---g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 76 (341)
..+..++|+|||++|+.++.+ + .|.+|++.+++...... +.. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999987754 3 48888888777655444 334 9999999999998887632
Q ss_pred ---------------CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 ---------------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 ---------------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
..|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++. .... .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~-------~~~~--~------- 197 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI-------IPQY--F------- 197 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS-------SCCS--S-------
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccc-------cccc--c-------
Confidence 5699999988876455554 3 78899999999 7777654421 0000 0
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---------CceEEEEcccc------c
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---------NNVKLWTAEED------Y 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~------~ 206 (341)
....|..+| +++ ...+... ..+..+ +|+|+.++.... ..+.+|+ ... .
T Consensus 198 --------~~~~l~~~d--~~~-~~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 260 (347)
T 2gop_A 198 --------KFWDIYIWE--DGK-EEKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDE 260 (347)
T ss_dssp --------CCEEEEEEE--TTE-EEEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTT
T ss_pred --------ccccEEEeC--CCc-eEEeccC---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEecccc
Confidence 011222333 211 2222211 223333 888887766542 2566776 221 1
Q ss_pred CCCCeEE-EEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcE-EEEeeeCC
Q psy17863 207 GQEPIVD-ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI-YKWQLVDS 284 (341)
Q Consensus 207 ~~~~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~ 284 (341)
+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+...+..+ ++++ .++++++.++.. .+|.+. +
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~--~~s~--~~~~~~~~~~~~~~l~~~~-g 331 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGF--DVDE--IVVYLKETATRLRELFTWD-G 331 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEE--EESS--SEEEEEECSSSCCEEEEES-S
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEee--eeeC--cEEEEEcCCCChHHheEeC-C
Confidence 3456775 8999 88 88999999999999 8766553 333345556655 7888 677777777665 777776 4
Q ss_pred CceEEEE
Q psy17863 285 SQISTLI 291 (341)
Q Consensus 285 ~~~~~~~ 291 (341)
+ ...+.
T Consensus 332 ~-~~~lt 337 (347)
T 2gop_A 332 E-EKQLT 337 (347)
T ss_dssp S-EEECC
T ss_pred c-EEEec
Confidence 3 34443
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.9e-15 Score=119.62 Aligned_cols=202 Identities=14% Similarity=0.250 Sum_probs=141.0
Q ss_pred eCCcEEEEEE-ccCCCEEEEEeC-CCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 12 KQGAIRAVRF-NVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 12 h~~~v~~~~~-~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
|...+..+++ .++++++++... ++.|.+|| .+++.+..+. .+...+..++++|+++++++...++.|.+||. +++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence 4457899999 577776666643 78999999 5677666664 34457899999999998888788899999995 456
Q ss_pred eeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 89 PVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 89 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
.+..+. .+...+..++++++++++++...++.|.+||..... +..+. .
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------~~~~~--~----- 202 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-----------------------LRQIG--G----- 202 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-----------------------EEEES--C-----
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-----------------------EEEEc--c-----
Confidence 555553 344568999999999887777778888888853210 00000 0
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC-eEEEEeccccceeee
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEE 245 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~ 245 (341)
. . ....+..++++++|+++++...++ .|.+||. +++.+..
T Consensus 203 ----~-g---------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~ 243 (286)
T 1q7f_A 203 ----E-G---------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA 243 (286)
T ss_dssp ----T-T---------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred ----C-C---------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence 0 0 012356677888888777777775 9999995 4666666
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
+..+........++++|+|+++++ +.++.|++|++....
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 655443322334488999987777 579999999976543
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=1e-15 Score=138.20 Aligned_cols=243 Identities=14% Similarity=0.027 Sum_probs=153.0
Q ss_pred eCCcEEEEEEccCCCEEEEEeCC-----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33478899999999999987654 46999999998875532 12223467899999 98888876554
Q ss_pred ------EEEEECCCCce----eeeecccCccEEEEEEcCCCcEEEEecCCC-----eEEEEEecCCCCcCeEEeecCCCc
Q psy17863 79 ------VILWEVTTGQP----VRRWREHASKVTCVKFNEDSSVVISGSQDN-----TVMMWDVKSRSHHPIQCCLDSKDS 143 (341)
Q Consensus 79 ------i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~ 143 (341)
|++|++.+++. +.....+...+..+.|+|||++|+..+.++ .|.+||+.++..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------------ 306 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------------ 306 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------------
Confidence 88999987653 222223334588999999999888776543 455555443210
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
+....+... ....... ++|+|+.|
T Consensus 307 -------------------~~~~~l~~~------------------------------------~~~~~~~-~~~dg~~l 330 (741)
T 1yr2_A 307 -------------------GPVTALIPD------------------------------------LKAQWDF-VDGVGDQL 330 (741)
T ss_dssp -------------------CCCEEEECS------------------------------------SSSCEEE-EEEETTEE
T ss_pred -------------------cccEEecCC------------------------------------CCceEEE-EeccCCEE
Confidence 101111110 0011111 23566666
Q ss_pred EEeec----CCeEEEEecccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeeeec
Q psy17863 224 LTCST----DECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGK 296 (341)
Q Consensus 224 ~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 296 (341)
+..+. ++.|.+||+.++ +....+..+...+..+ +++ ++.++++...|+..+||.+. +++....+.. ...
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~ 406 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV--GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGI 406 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE--EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSS
T ss_pred EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCC
Confidence 55554 456999998774 2333334444433333 455 56678888899988888765 4555555541 235
Q ss_pred cceEEEEEcCCCcEEEE----eC-CCcEEEEEccccc
Q psy17863 297 AVVNSLCSHPTRKHIMS----AC-GNNVKLWTAEEDY 328 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~----~~-d~~i~vw~~~~~~ 328 (341)
..+..+.++|+++.|+. .. .++|++||+.++.
T Consensus 407 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 407 GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67889999999876652 22 5789999987643
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=1.6e-14 Score=117.52 Aligned_cols=244 Identities=7% Similarity=0.028 Sum_probs=156.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
....+.+. +++.+++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45677774 35556666668999999999999988886 34668899999998554554478999999999998877665
Q ss_pred ccC-----ccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCc--------CeEEeecCCCceEEEeecc---------
Q psy17863 95 EHA-----SKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSD--------- 151 (341)
Q Consensus 95 ~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------- 151 (341)
... .....+++ .++..+++.. .++.|.++|+.+++.. +......+.+..+++...+
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 332 14456777 3444444433 4889999998876421 1112222223333333333
Q ss_pred -CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 152 -GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 152 -g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+.|.++|..+.+....+.... ......++++|++++++++..
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~-----------------------------------g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKL-----------------------------------GDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCT-----------------------------------TCCCEEEEECTTSCEEEEESS--
T ss_pred CceEEEEECCCCeEEEEEecCC-----------------------------------CCCceeEEEecCCCEEEEEcc--
Confidence 678888877665443332110 124567778887777777654
Q ss_pred eEEEEeccccceeee--ecCcccceeEEEEEeCC-CCCEEEEe----cCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 231 CLRLFDKATGELLEE--YKGHKSGDFRIECCLDS-KDSQIFCG----SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
.|.+||..+++.... +.........+ +++| ++++.++. ..++.|.+||.. ++.+.++.. ......++
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi--~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~P~~~~ 318 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGL--TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GIIPGAFC 318 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEE--EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE---EESEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEE--EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe---ccCcceEE
Confidence 899999988775321 12112334445 8998 55555565 578999999987 888888872 22334555
Q ss_pred E
Q psy17863 304 S 304 (341)
Q Consensus 304 ~ 304 (341)
|
T Consensus 319 ~ 319 (328)
T 3dsm_A 319 W 319 (328)
T ss_dssp E
T ss_pred E
Confidence 5
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=6.5e-15 Score=119.94 Aligned_cols=207 Identities=12% Similarity=0.198 Sum_probs=144.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEe---------cCcccceeEEEEec-CCCEEEEec-CCCcEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTY---------GGHAHEVNDATAAC-DSSQIASGA-SDKSVI 80 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~ 80 (341)
-.....++++|+|+++++...++.|++|+..... .+..+ ..+......++++| ++.++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3578899999999988888889999999975442 45555 23445688999999 788888876 689999
Q ss_pred EEECCCCceeeeecccC----------ccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHA----------SKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+|+ .+++.+..+.... .....++++|+ +.++++...++.|++|+..+++
T Consensus 170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------------------- 229 (329)
T 3fvz_A 170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------------------- 229 (329)
T ss_dssp EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------------------
T ss_pred EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-------------------
Confidence 999 5677776664322 33788999998 7777777778888888876433
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
.+..+........+..++++| +.. +..+|+..++...+
T Consensus 230 --------------~~~~~~~~~~~~~~~~~~~~p-g~~---------------------------~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 230 --------------FVREIKHASFGRNVFAISYIP-GFL---------------------------FAVNGKPYFGDQEP 267 (329)
T ss_dssp --------------EEEEECCTTTTTCEEEEEEET-TEE---------------------------EEEECCCCTTCSCC
T ss_pred --------------EEEEEeccccCCCcceeeecC-CEE---------------------------EEeCCCEEeccCCC
Confidence 111111111112244455555 211 11234444555566
Q ss_pred CeEEEEeccccceeeeec---CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 230 ECLRLFDKATGELLEEYK---GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..|++||..+++.+..+. ++......+ +++|+|.++++...++.|++|++..
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i--a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDI--VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEE--EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEE--EECCCCCEEEEECCCCEEEEEeCCc
Confidence 789999999999888873 455555666 8999998888888999999999764
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.72 E-value=3.1e-15 Score=123.99 Aligned_cols=263 Identities=10% Similarity=0.076 Sum_probs=182.4
Q ss_pred cCCCEEEEEeCC-----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEECCCC
Q psy17863 23 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTG 87 (341)
Q Consensus 23 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~ 87 (341)
++++.+++.... +.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766665542 69999999999999999865555 899999999988876 3678999999999
Q ss_pred ceeeeeccc-------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEe-----ec-CCCceEEEeeccC
Q psy17863 88 QPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCC-----LD-SKDSQIFCGSSDG 152 (341)
Q Consensus 88 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~~~g 152 (341)
+.+..+.-. ......+.|+||+++++.+.. ++.|.+.|+.+.+....... .. .....+++.+.||
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 988776532 123457899999999998864 57899999988763211111 11 1124566777899
Q ss_pred eEEEEEccCCcceeeeE--eeecCc-eEEEEEECCCCceEEE-eCCCceEEEEccccc-------------------CCC
Q psy17863 153 KIYKWQLVDSSQISTLI--HSVGKA-VVNSLCSHPTRKHIMS-ACGNNVKLWTAEEDY-------------------GQE 209 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-------------------~~~ 209 (341)
++.+.+..+.+...... ...... ....+.+.+++..++. ...+.+.+.|..... ...
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 99888885544432110 000111 1123456777665444 445778888874321 011
Q ss_pred CeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEec-CCCcEE
Q psy17863 210 PIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIY 277 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~ 277 (341)
....++++|+++.+++... ++.|.++|..+.+.+..+.... ....+ .++|+++ ++++.. .++.|.
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gi--a~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSI--NVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECCSSSCEEEEEETTTTEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeE--EEccCCCEEEEEEcCCCCeEE
Confidence 1223789999888777643 3579999999999998886433 23444 8999999 888877 599999
Q ss_pred EEeeeCCCceEEE
Q psy17863 278 KWQLVDSSQISTL 290 (341)
Q Consensus 278 iwd~~~~~~~~~~ 290 (341)
++|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999887
No 197
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=7.8e-15 Score=131.91 Aligned_cols=250 Identities=10% Similarity=0.100 Sum_probs=152.5
Q ss_pred cCCCEEEEEeCC-----CeEEEEcCCCcceeeEe------cCcccceeEEEEecCCCEEEEecCCC-----cEEEEECCC
Q psy17863 23 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTY------GGHAHEVNDATAACDSSQIASGASDK-----SVILWEVTT 86 (341)
Q Consensus 23 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~ 86 (341)
|+|++++....+ +.+.+.+...++....+ .+|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889887755432 24555555444433222 13445688999999999998765433 899999999
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
++.......+ ..+..++|+|||+.|+.++.++. ....... .-.......|++|++.++....
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~------~~~~~~~-----------~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ------DGKSDGT-----------ETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC------SSCCSSS-----------CCCCCCCCEEEEEETTSCGGGC
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCc------ccccccc-----------ccccCCCCEEEEEECCCCcccc
Confidence 9876533222 23667999999999998877643 0000000 0000112446666665543221
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-----CCeEEEEeccc--
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-----DECLRLFDKAT-- 239 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-- 239 (341)
.+..... .+...+..+.|+|||++|+..+. +..|++||+.+
T Consensus 223 ~~v~~~~--------------------------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 223 ILCAEFP--------------------------------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp EEEECCT--------------------------------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred eEEeccC--------------------------------CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 1111100 01223456677777777776554 56899999986
Q ss_pred ----cc-eeeeecCcccceeEEEEEeCCCCCEEEEecC----CCcEEEEeeeCCCc--eEEEEeeeec--cceEEEEEcC
Q psy17863 240 ----GE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSSQ--ISTLIHSVGK--AVVNSLCSHP 306 (341)
Q Consensus 240 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~--~~v~~~~~~~ 306 (341)
+. ....+..+...+.. .++++|+.|+..+. .+.|.+||+.+++. ...+. .+. ..+..++|++
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~---~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD---YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVR 345 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE---EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCEEEEEEEET
T ss_pred cccCCccceEEeeCCCCcEEE---EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCCCeEEEEEEEc
Confidence 43 35566666555443 46788887776554 34699999887752 34554 333 3688899998
Q ss_pred CCcEEEEeC-CCc--EEEEEcccc
Q psy17863 307 TRKHIMSAC-GNN--VKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~-d~~--i~vw~~~~~ 327 (341)
++.++++.. ++. |.+|++.++
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCEEEEEEEECCEEEEEEEECCCC
Confidence 888888888 875 555665333
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.70 E-value=1.6e-13 Score=114.76 Aligned_cols=240 Identities=11% Similarity=0.084 Sum_probs=152.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~ 91 (341)
.....|+|+++++++++...++.|++||..+++........ .... ++|+|+++.|+++..++ .|.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999998888777899999999877765555443 2334 99999999998888766 78888887665433
Q ss_pred ee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 92 RW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 92 ~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
.+ ......+.+++++|++..|+.+..++.|..||..+... .++....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-----------------------~~~~~~~------ 259 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-----------------------TLIKQLE------ 259 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-----------------------EEEEECC------
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-----------------------EEEeccc------
Confidence 33 22445678899999544555566678888888765430 0000000
Q ss_pred eEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeee
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
...... ..|...++|+|+ +.++++-..++.|+.|+.... +..+
T Consensus 260 --~~g~~~--------------------------------~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~ 303 (409)
T 3hrp_A 260 --LSGSLG--------------------------------TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWF 303 (409)
T ss_dssp --CCSCCC--------------------------------CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEE
T ss_pred --ccCCCC--------------------------------CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEE
Confidence 000000 001114555553 344444444556666664422 1122
Q ss_pred cCcc---------------cceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEEEEeeee---------------
Q psy17863 247 KGHK---------------SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVG--------------- 295 (341)
Q Consensus 247 ~~~~---------------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--------------- 295 (341)
.++. .....+ +++++|+++++-. .++.|+.|++.+++. ..+. ++
T Consensus 304 ~g~~~~~g~~dg~~~~~~~~~P~gi--a~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~--g~~~~~g~~~g~~~~~~ 378 (409)
T 3hrp_A 304 CGSATQKTVQDGLREEALFAQPNGM--TVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA--GQVDVASQIDGTPLEAT 378 (409)
T ss_dssp EECTTCCSCBCEEGGGCBCSSEEEE--EECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE--ECTTCBSCCCBSTTTCC
T ss_pred EeCCCCCCcCCCcccccEeCCCeEE--EEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe--CCCCCCCcCCCChhceE
Confidence 1111 123344 8999999888877 889999999777653 3343 22
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
-.....+++++++.++++-. +++|+.++++
T Consensus 379 ~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 379 FNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 24588999999998888887 8889888763
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=3.6e-14 Score=112.10 Aligned_cols=226 Identities=11% Similarity=0.129 Sum_probs=153.5
Q ss_pred ceeeeEEeeeC-CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecC-CCcE
Q psy17863 3 YTCVQTIDCKQ-GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGAS-DKSV 79 (341)
Q Consensus 3 ~~~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg~i 79 (341)
.+.+.++..+. ..+.+++++|+|++++ +.++.|..||. +++.+.++..+. ..+.++.+.++|+++++.+. ++.+
T Consensus 25 G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v 101 (276)
T 3no2_A 25 KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTI 101 (276)
T ss_dssp TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEE
T ss_pred CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEE
Confidence 35566777666 4789999999999888 34778999998 899999988653 57889999999999999877 7778
Q ss_pred EEEECCCCceeeeecc------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 80 ILWEVTTGQPVRRWRE------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
..+|. +|+.+..+.. +......+++.++++++++...++.|..||.+ ++
T Consensus 102 ~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~----------------------- 156 (276)
T 3no2_A 102 LEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ----------------------- 156 (276)
T ss_dssp EEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----------------------
T ss_pred EEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----------------------
Confidence 88885 6777666542 11234455677888888888878887777765 33
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
.+|..... .....+...++|+.++++..++.|.
T Consensus 157 -~~w~~~~~----------------------------------------------~~~~~~~~~~~g~~~v~~~~~~~v~ 189 (276)
T 3no2_A 157 -LLNSVKLS----------------------------------------------GTPFSSAFLDNGDCLVACGDAHCFV 189 (276)
T ss_dssp -EEEEEECS----------------------------------------------SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred -EEEEEECC----------------------------------------------CCccceeEcCCCCEEEEeCCCCeEE
Confidence 12222211 1123455677888888888888999
Q ss_pred EEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEec--CC------CcEEEEee-eCCCceEEEEeeeeccceE
Q psy17863 234 LFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGS--SD------GKIYKWQL-VDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~--~d------g~i~iwd~-~~~~~~~~~~~~~~~~~v~ 300 (341)
.+|..+|+.+.++..+..+ .........++|+.+++.. .. +..+++++ .+++.+..+.....-+.+.
T Consensus 190 ~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 190 QLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIS 269 (276)
T ss_dssp EECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCC
T ss_pred EEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCccccccee
Confidence 9999999998888643211 1122236778888877763 21 23455555 5677776666333334455
Q ss_pred EEE
Q psy17863 301 SLC 303 (341)
Q Consensus 301 ~~~ 303 (341)
+++
T Consensus 270 ~~~ 272 (276)
T 3no2_A 270 TIC 272 (276)
T ss_dssp EEE
T ss_pred eee
Confidence 543
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=3.6e-14 Score=113.78 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=140.7
Q ss_pred cceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
+..+..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555656667788999999998 7788888999999999877 5666667778999999999998888777788888
Q ss_pred EEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 124 WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 124 wd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
||..+++... +......
T Consensus 95 ~d~~~g~~~~----------------------------------~~~~~~~----------------------------- 111 (296)
T 3e5z_A 95 QREPGGEWES----------------------------------IADSFEG----------------------------- 111 (296)
T ss_dssp ECSTTCCEEE----------------------------------EECEETT-----------------------------
T ss_pred EcCCCCcEEE----------------------------------EeeccCC-----------------------------
Confidence 8876543100 0000000
Q ss_pred cccCCCCeEEEEEccCCCEEEE----ee-------------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 204 EDYGQEPIVDACFTRDCQCILT----CS-------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~l~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
.....+..++++|+|+++++ ++ ..+.|..++.. ++. ..+..+......+ +++|+++.
T Consensus 112 --~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi--~~s~dg~~ 185 (296)
T 3e5z_A 112 --KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGL--AFLPSGNL 185 (296)
T ss_dssp --EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEE--EECTTSCE
T ss_pred --CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccE--EECCCCCE
Confidence 00112344566666665555 22 13456666654 433 3333344444555 89999998
Q ss_pred EEEecCCCcEEEEeee-CCCc---eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLV-DSSQ---ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++.+.++.|++|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+|+.+.
T Consensus 186 lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g 246 (296)
T 3e5z_A 186 LVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG 246 (296)
T ss_dssp EEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS
T ss_pred EEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC
Confidence 8888888999999987 4544 2223 1345567789999999988877 88899999764
No 201
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.69 E-value=1.1e-13 Score=114.99 Aligned_cols=288 Identities=9% Similarity=0.035 Sum_probs=180.8
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcc---------cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA---------HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
++..+++++.++.|..+|..+++.+..+.... ..+.+. ...++..+++++.++.|..+|.++|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 35678888889999999999999887765421 222222 22245678888899999999999999887765
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------EeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------CCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
............ +..++.++.++.+..+|.++++..-.. ......++.+++++.++.+..+|..++
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence 433221112222 347788888999999998876521110 111112457888999999999999998
Q ss_pred cceeeeEeeecCce--EEE---EEEC---CCCceEEEeCCCceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecC
Q psy17863 163 SQISTLIHSVGKAV--VNS---LCSH---PTRKHIMSACGNNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 163 ~~~~~~~~~~~~~~--~~~---~~~~---~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
+............. +.. +... .++..++...++.+..+|..+.. .......+.. ++..+++++.+
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~ 286 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQN 286 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETT
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCC
Confidence 87766543211000 000 0011 13444444456788888876543 1222333333 45678888889
Q ss_pred CeEEEEeccccceeeeecCccc-ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
+.+..+|..+++.+........ ..... .. .+..|+.++.+|.++.+|..+++.+.... .....+.......++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~ 360 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSP--VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADG 360 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCC--EE--ETTEEEEECTTSEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETT
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCC--EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCcceeCCEEECC
Confidence 9999999999988776652211 11112 11 25688889999999999999999887776 322223221112244
Q ss_pred cEEEEeC-CCcEEEEE
Q psy17863 309 KHIMSAC-GNNVKLWT 323 (341)
Q Consensus 309 ~~l~~~~-d~~i~vw~ 323 (341)
.|+.++ +|.|..|+
T Consensus 361 -~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 -KLLIQAKDGTVYSIT 375 (376)
T ss_dssp -EEEEEBTTSCEEEEE
T ss_pred -EEEEEeCCCEEEEEe
Confidence 555666 99999886
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.68 E-value=4.6e-14 Score=114.92 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=161.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCcc-------cceeEEEEec
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHA-------HEVNDATAAC 65 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~ 65 (341)
++.+.++..-..+ .++++|||+++++++ .++.|.+||..+++.+.++.... ..-..++|+|
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 3556667655555 499999999888765 36789999999999888875321 2456789999
Q ss_pred CCCEEEEecC--CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC-CCC-----c-----
Q psy17863 66 DSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-RSH-----H----- 132 (341)
Q Consensus 66 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~-----~----- 132 (341)
||++++++.. ++.|.++|+.+++.+.++..... ...+....+.+++.+.||.+.+.++.. ++. .
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999988864 68999999999999888853221 122222334555666666666666654 221 0
Q ss_pred --CeE--EeecCCCceEEEeeccCeEEEEEccCCcc--eeeeEe--------eecCceEEEEEECCCCceEEEeC-----
Q psy17863 133 --PIQ--CCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIH--------SVGKAVVNSLCSHPTRKHIMSAC----- 193 (341)
Q Consensus 133 --~~~--~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----- 193 (341)
++. ..+...++.++..+.+|++++.|...... ...+.. .........++++++++.+....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 000 01112455565677789999999876542 222210 00011223467788888877753
Q ss_pred ------CCceEEEEccccc------CCCCeEEEEEccCCC-EEEEee-cCCeEEEEeccccceeeeecCc
Q psy17863 194 ------GNNVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCS-TDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 194 ------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
.+.|.++|..+.. -..++..+++++|++ +|++.. .++.|.++|..+++.++++...
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 2568888887755 234677899999997 666654 4899999999999998888644
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=1.4e-14 Score=129.83 Aligned_cols=247 Identities=9% Similarity=0.031 Sum_probs=146.4
Q ss_pred ccCCCEEEEEeCCC-----eEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEE-----EecCCCcEEEEECC
Q psy17863 22 NVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIA-----SGASDKSVILWEVT 85 (341)
Q Consensus 22 ~~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~-----~~~~dg~i~iw~~~ 85 (341)
+|+|++++....++ .+.+.+...++....+. +|...+..++|+|||++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888766543 34444444444333322 3555799999999999998 44456789999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++.+..-.........++|+|||+.|+.++.|.. ..+.. . .......|++|++.++...
T Consensus 156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~------~~~~~----------~----~~~~~~~v~~~~l~t~~~~ 215 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTD------PSIKV----------D----ERPGYTTIRYHTLGTEPSK 215 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCC------TTSCG----------G----GGGGGCEEEEEETTSCGGG
T ss_pred CCCCcCCcccCcccccceEEecCCCEEEEEEecCC------CCCcc----------c----cCCCCCEEEEEECCCCchh
Confidence 98865111111111267899999999998887653 00000 0 0011234555555544321
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC----eEEEEeccccc
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE----CLRLFDKATGE 241 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~ 241 (341)
..+..... .+...+..+.|+|||++|+..+.++ .|++++..+++
T Consensus 216 ~~lv~~~~--------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 216 DTVVHERT--------------------------------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp CEEEECCC--------------------------------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred ceEEEecC--------------------------------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 11111000 0123456677888888777766655 67777765554
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEec---CCCcEEEEeeeCCCc--eEEEEeeeeccceEEEEEcCCCcEEEEeC-
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGS---SDGKIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 315 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 315 (341)
. ..+..+....... .+ ++|.+++... .++.|.+||+.+++. ...+........+..++|+ ++.++++..
T Consensus 264 ~-~~l~~~~~~~~~~--~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEV--HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEE--EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEE--Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 3 4444444444433 33 5666444443 358899999887764 3444421224568889998 677888888
Q ss_pred CCcEEEEEcc
Q psy17863 316 GNNVKLWTAE 325 (341)
Q Consensus 316 d~~i~vw~~~ 325 (341)
|+..++|.++
T Consensus 339 dg~~~l~~~~ 348 (695)
T 2bkl_A 339 DATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9988888765
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=6.8e-13 Score=109.38 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=158.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCc-------ccceeEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AHEVNDATAACD 66 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~ 66 (341)
+.+.++..-..+ .++++|||++++++. .++.|.+||..+.+.+.++... ...-..+.|+||
T Consensus 58 ~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD 135 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence 344455543344 999999999999886 3678999999988887776432 123457899999
Q ss_pred CCEEEEecC--CCcEEEEECCCCceeee-ecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEE------
Q psy17863 67 SSQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQC------ 136 (341)
Q Consensus 67 ~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~------ 136 (341)
|++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ ..+++.+.||.+.++|. +++......
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~ 209 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT 209 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence 999998874 57899999 99988877 6532 2 23444543 45666778899999988 554221100
Q ss_pred ---------eecCCCceEEEeeccCeEEEEEccCCcce--eeeEeee--------cCceEEEEEECCCCceEEEeC----
Q psy17863 137 ---------CLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STLIHSV--------GKAVVNSLCSHPTRKHIMSAC---- 193 (341)
Q Consensus 137 ---------~~~~~~~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---- 193 (341)
.....++.++..+..+.+.+.|+...... ..+.... .......+.++|+++.+.+..
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 01112334444446788999998654321 1111100 112234478899988877753
Q ss_pred -------CCceEEEEccccc------CCCCeEEEEEccCCC-EEEEee-cCCeEEEEeccccceeeee
Q psy17863 194 -------GNNVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCS-TDECLRLFDKATGELLEEY 246 (341)
Q Consensus 194 -------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~ 246 (341)
++.|.++|..+.. .......++|+|||+ +++++. .++.|.++|..+++.+..+
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 2468889987654 344578999999999 777777 5899999999999988774
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.6e-12 Score=104.16 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=163.4
Q ss_pred cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee-ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
..+...+.++++.++++.+++...++.|.+||.. ++.... ...+...+..+++.+++.+.++...++.|..||... +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c
Confidence 3445678999999999987777668899999987 554322 223456789999999998888777678888887541 1
Q ss_pred CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc---
Q psy17863 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--- 206 (341)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--- 206 (341)
+..+... .....+..+++.+++.++++.. ++.+..|+.....
T Consensus 89 -----------------------~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~ 134 (299)
T 2z2n_A 89 -----------------------IKEYTLP-----------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREY 134 (299)
T ss_dssp -----------------------EEEEECS-----------STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred -----------------------EEEEeCC-----------CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence 1111110 0123467888888888777765 4678888763211
Q ss_pred ----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 207 ----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 207 ----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
....+..++++++|+++++...++.|..||. +++.... +......+..+ ++++++++.++...++.|.+|+.
T Consensus 135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI--TKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECTTSSEEEEETTTTEEEEECT
T ss_pred cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE--EECCCCCEEEEccCCceEEEECC
Confidence 2356789999999988877777789999998 6655432 22233334444 88999987777777889999998
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+++.. .+....+...+.+++++++|+++++.. ++.|..|+..
T Consensus 212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 212 -SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 66543 333213446789999999999888776 8899999974
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=3.5e-14 Score=116.22 Aligned_cols=265 Identities=10% Similarity=-0.013 Sum_probs=152.7
Q ss_pred CcEEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEe-------cCcccceeEEEEecCCCEEEEecC-----CCcE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTY-------GGHAHEVNDATAACDSSQIASGAS-----DKSV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 79 (341)
..+..++++|+|+++++... ++.++||.+.+++. ..+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 78999999999999888642 34355555544443 222 134567899999999876665433 5789
Q ss_pred EEEECCCCceeeeeccc------CccEEEEEEcCCCcEE-EEec---CCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 80 ILWEVTTGQPVRRWREH------ASKVTCVKFNEDSSVV-ISGS---QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
.+||+.+++.+..+... ...+..+++++++..+ ++-. .++.|.+||+.+++. ......+..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~--~r~~~~~~~------- 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA--ARVLQGYPG------- 166 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE--EEECTTCTT-------
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE--EEEecCCCc-------
Confidence 99999999876665432 2346789998754444 4444 567888888765441 110000000
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe-CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
. .... ..+.+++..+... .++.+..|. ..+..++++|+++.|+.+..
T Consensus 167 --------------~--------~~~~---~~~~~~g~~~~~~~~~g~~~~~~-------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 167 --------------I--------APED---IDLVIDGVPVQIGQPDGTVIRPH-------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp --------------T--------SCCS---CCCEETTEECBEECTTSCEECCC-------CCEEEEEECTTSCEEEEEES
T ss_pred --------------c--------cccc---cceeECCEEEEeccCCCceecee-------cccceeEeccCCCEEEEEeC
Confidence 0 0000 0011112111111 112222221 23566888888887777766
Q ss_pred CC-eEEEEeccc---c-----ceee--eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 229 DE-CLRLFDKAT---G-----ELLE--EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 229 d~-~i~i~d~~~---~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
.+ .+..++... + +... ...++......+ +++++|+++++...++.|.+||..+++. ..+.......
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi--a~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~ 291 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI--SIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLS 291 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE--EECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGS
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE--EECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCcee
Confidence 55 454444321 0 1011 111222222334 7899999999998999999999756653 3333112245
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
.+.+++|.++++++++.+ .+.+.+|.
T Consensus 292 ~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred cCCeeEECCCCcEEEEeCccccccccc
Confidence 689999999999888877 54544433
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.66 E-value=1.1e-12 Score=105.19 Aligned_cols=240 Identities=11% Similarity=0.136 Sum_probs=145.0
Q ss_pred EEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 8 TIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.+..+..---+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||.++
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 344455566789999964 4566666789999999887654 3333 4567899999999995554 3 46799999987
Q ss_pred Cceeeeecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 87 GQPVRRWRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 87 ~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
++....... ....+..++++|+|++.++...+... .. ... ...+.|..++..
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-----~~--------~~~---------~~~~~l~~~d~~-- 138 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-----PA--------VLE---------RHQGALYSLFPD-- 138 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB-----TT--------BCC---------TTCEEEEEECTT--
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc-----cc--------ccc---------CCCcEEEEEECC--
Confidence 765332221 22457889999999866644222110 00 000 001122222211
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-EeecCCeEEEEec--cc
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-TCSTDECLRLFDK--AT 239 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~ 239 (341)
.....+.. .. .....++|+|+++.++ +.+.++.|.+|++ .+
T Consensus 139 g~~~~~~~--~~----------------------------------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 139 HHVKKYFD--QV----------------------------------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp SCEEEEEE--EE----------------------------------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCEEEEee--cc----------------------------------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 11111110 01 1123456666665443 4445667777775 34
Q ss_pred cce-----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEE
Q psy17863 240 GEL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMS 313 (341)
Q Consensus 240 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 313 (341)
+.. ...+..+......+ +++++|++.++....+.|..||..+++.+..+. .+...+++++|. |+++.|..
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~--~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGM--CIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEE--EEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEE
T ss_pred CcccCcEEEEECCCCCCCCCee--EECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEE
Confidence 432 22222222334444 789999888877778899999988899888887 555679999998 88876655
Q ss_pred eC
Q psy17863 314 AC 315 (341)
Q Consensus 314 ~~ 315 (341)
++
T Consensus 259 t~ 260 (297)
T 3g4e_A 259 TC 260 (297)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 208
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.66 E-value=8.3e-15 Score=119.49 Aligned_cols=257 Identities=9% Similarity=-0.005 Sum_probs=173.3
Q ss_pred eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEECCCCceeeeeccc-------Cc
Q psy17863 36 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTGQPVRRWREH-------AS 98 (341)
Q Consensus 36 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~ 98 (341)
.|.+.|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999766566 799999999998886 3688999999999999888643 12
Q ss_pred cEEEEEEcCCCcEEEEecC--CCeEEE--EEecCCCCcCeEE-----eecCCCceEEEeeccCeEEEEEccC-----Ccc
Q psy17863 99 KVTCVKFNEDSSVVISGSQ--DNTVMM--WDVKSRSHHPIQC-----CLDSKDSQIFCGSSDGKIYKWQLVD-----SSQ 164 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~i~~~d~~~-----~~~ 164 (341)
....++++|||++++.+.. +..+.+ +|+.+ ...+.. ........+++.+.||.+.+.++.+ ++.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 3467999999999998864 467888 88876 111100 1111222455667788888888876 322
Q ss_pred eeee--EeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------------------CCCCeEEEEEccCCCEE
Q psy17863 165 ISTL--IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 165 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l 223 (341)
.... ....+..+. .....+.++++.. +.+.+.|..... .......++++|+++.+
T Consensus 203 ~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred EEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 2100 011122222 3444445555555 888888875321 00112227899999988
Q ss_pred EEeec-C--------CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEec-CCCcEEEEeeeCCCceEEEEe
Q psy17863 224 LTCST-D--------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGS-SDGKIYKWQLVDSSQISTLIH 292 (341)
Q Consensus 224 ~~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~ 292 (341)
+++.. . +.+.++|+.+++.+..+.... ....+ ++++++++ +++.. .++.|.++|+.+++.+.++.
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi--~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~- 354 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAI--IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE- 354 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEE--EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC-
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceE--EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE-
Confidence 87643 2 356699999999988887544 33445 89999984 55666 59999999999999998887
Q ss_pred eeeccceEEEEEcC
Q psy17863 293 SVGKAVVNSLCSHP 306 (341)
Q Consensus 293 ~~~~~~v~~~~~~~ 306 (341)
.. .....+++.+
T Consensus 355 -vg-~~P~~i~~~~ 366 (368)
T 1mda_H 355 -LD-KGPESLSVQN 366 (368)
T ss_dssp -CC-SCCCEEECCC
T ss_pred -CC-CCCCEEEeec
Confidence 22 3344555543
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.62 E-value=6.7e-12 Score=101.88 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=137.0
Q ss_pred CcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 14 GAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 14 ~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.-..+.+|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+++++++++. .++ |.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEE
Confidence 3456889999754 5566667889999998876543 333 34679999999999877764 444 99999988775332
Q ss_pred ecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 93 WRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 93 ~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
... ....+.+++++|+|+++++...+.. . ...+.|..++ +++ ...+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~------~---------------------~~~~~l~~~~--~g~-~~~~ 174 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKA------E---------------------TGAGSIYHVA--KGK-VTKL 174 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTC------C---------------------TTCEEEEEEE--TTE-EEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC------C---------------------CCceEEEEEe--CCc-EEEe
Confidence 211 1246889999999986654432100 0 0011222222 111 1111
Q ss_pred EeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe-ecCCeEEEEecc--cc-ce--
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC-STDECLRLFDKA--TG-EL-- 242 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~-~~-- 242 (341)
.. .. .....++|+|+++.++.+ +.++.|.+|++. ++ +.
T Consensus 175 ~~--~~----------------------------------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 175 FA--DI----------------------------------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp EE--EE----------------------------------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred eC--CC----------------------------------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 10 00 112345566666554433 345678888764 44 21
Q ss_pred ---eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEEeC
Q psy17863 243 ---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMSAC 315 (341)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 315 (341)
...+.........+ +++++|++.++...++.|..|+. +++.+..+. .+...+++++|+ |+++.|..++
T Consensus 219 ~~~~~~~~~~~~~p~gi--~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGS--VCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CEEEEECTTSSSEEEEE--EECTTSCEEEEEETTTEEEEECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEE
T ss_pred ceEEEECCCCCCCCCee--EECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEe
Confidence 11222222233334 78899987777766788999997 677777766 455679999998 8887665554
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.62 E-value=2.1e-12 Score=103.92 Aligned_cols=249 Identities=9% Similarity=0.054 Sum_probs=144.3
Q ss_pred eeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+..+..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 445555666778999999998 5667777899999997 444 4455556677899999999997776666688999997
Q ss_pred CCCceeeeeccc----CccEEEEEEcCCCcEEEE----ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 85 TTGQPVRRWREH----ASKVTCVKFNEDSSVVIS----GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 85 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
+ ++........ ...+..+++.++|++.++ +..+. .+.... ......+.|..
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~------~~~~~~--------------~~~~~~~~v~~ 173 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKP------SQGCPA--------------DPELAHHSVYR 173 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCG------GGSCCC--------------CCSSSCEEEEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccc------cccccc--------------ccccCCCeEEE
Confidence 5 5532221111 123567888888887765 22110 000000 00001123444
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC------C
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD------E 230 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~ 230 (341)
+|..+++..... . .. ....++|+|+++.|+.+... +
T Consensus 174 ~d~~~g~~~~~~--~--~~----------------------------------~p~gl~~spdg~~lyv~~~~~~~~~~~ 215 (305)
T 3dr2_A 174 LPPDGSPLQRMA--D--LD----------------------------------HPNGLAFSPDEQTLYVSQTPEQGHGSV 215 (305)
T ss_dssp ECSSSCCCEEEE--E--ES----------------------------------SEEEEEECTTSSEEEEEECCC---CCC
T ss_pred EcCCCCcEEEEe--c--CC----------------------------------CCcceEEcCCCCEEEEEecCCcCCCCC
Confidence 444333221111 1 01 12345556666555554443 5
Q ss_pred eEEEEeccccce--eeee-cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 231 CLRLFDKATGEL--LEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 231 ~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|++|++..+.. ...+ .........+ +++++|++.+ +..+| |.+|+. +++.+..+. ... .+..++|+|+
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~pdgi--~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~~--~~~-~~~~~~f~~d 287 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGLPDGF--CVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHIP--TPG-TASNCTFDQA 287 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSCCCSE--EECTTSCEEE-CCSSE-EEEECT-TSCEEEEEE--CSS-CCCEEEECTT
T ss_pred EEEEEEecCCCccCCeEEEECCCCCCCeE--EECCCCCEEE-ecCCc-EEEECC-CCCEEEEEE--CCC-ceeEEEEeCC
Confidence 677777654321 0111 1111122234 7889998444 44454 999996 677777776 333 5889999999
Q ss_pred CcEEEEeCCCcEEEEE
Q psy17863 308 RKHIMSACGNNVKLWT 323 (341)
Q Consensus 308 ~~~l~~~~d~~i~vw~ 323 (341)
++.|..++.+.+..++
T Consensus 288 ~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 288 QQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCEEEEEETTEEEEEE
T ss_pred CCEEEEEcCCeEEEEE
Confidence 9888877744444433
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=4.8e-14 Score=115.29 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=124.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----------eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+++.+++++...++++|+.++ +++|++.+.. ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6669865433 11223 3556 999999 88999998 889999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+.+.........|...+.++.+.+.. +++++.||.+.+||+.++.
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~--------------------------------- 157 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS--------------------------------- 157 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------------------------------
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------------------------------
Confidence 98877666666777778877776542 7777777887777776543
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce-
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL- 242 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 242 (341)
... . ...+++++|+|+| ++.|..||.+++|+...++.
T Consensus 158 ~~~-~---------------------------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 158 TKQ-L---------------------------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EEE-E---------------------------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred ccc-c---------------------------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 100 0 1246778888888 67788999999998876664
Q ss_pred -eeee------c---CcccceeEEEEEeCCCCCEEEEe
Q psy17863 243 -LEEY------K---GHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 243 -~~~~------~---~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
.+++ . +|...+..+ .|.+++.++++-
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI--~wl~~~~flv~y 231 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSV--TILSPQDFLAVF 231 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEE--EESSSSEEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEE--EEecCCeEEEEE
Confidence 4555 2 355556666 888999888863
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=5.2e-13 Score=105.48 Aligned_cols=200 Identities=7% Similarity=0.006 Sum_probs=134.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
..+.+++++++|+++++.. ++.|.+||...... ..+. .....+..+++.++++++++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 4678899999999666655 88999999766543 3332 2335688999999999877777788999997655443332
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
.......+..++++++++++++...++.|.+||...... .... .
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------------------------------~~~~--~- 188 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------------------------------VVLP--F- 188 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE---------------------------------EECC--C-
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce---------------------------------Eeec--c-
Confidence 222334567899999888777766677788887654320 0000 0
Q ss_pred cCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
. ....+..++++++|.++++...++.|.+|+............+...
T Consensus 189 ~---------------------------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 189 T---------------------------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT 235 (270)
T ss_dssp S---------------------------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred c---------------------------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC
Confidence 0 0123456777777766666666788999998654332222222233
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+..+ +++++|+++++...++.|+++++...+.
T Consensus 236 p~~i--~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 236 PLAV--AVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEE--EECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceeE--EECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 4555 8899999888888999999999876544
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.59 E-value=3.1e-13 Score=121.00 Aligned_cols=239 Identities=12% Similarity=0.123 Sum_probs=147.2
Q ss_pred eCCcEEEEEEccCCCEEEEE-----eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTC-----GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||-+ +....|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 55578899999999999843 33357999999998865431 111123678999 9999998877743
Q ss_pred -----EEEEECCCCce----eeeecc-cCccEEEEEEcCCCcEEEEecCC----CeEEEEEecCCCCcCeEEeecCCCce
Q psy17863 79 -----VILWEVTTGQP----VRRWRE-HASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQCCLDSKDSQ 144 (341)
Q Consensus 79 -----i~iw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~ 144 (341)
|++|++.++.. +..... |......+.|+||+++|+..... ..|.++|+.++..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------------- 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------------- 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------------
Confidence 99999987643 333333 44557889999999988654322 3555555543320
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
....+... ....... ++++|..|+
T Consensus 272 -------------------~~~~l~~~------------------------------------~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 272 -------------------PLLTVQGD------------------------------------LDADVSL-VDNKGSTLY 295 (693)
T ss_dssp -------------------CCEEEECS------------------------------------SSSCEEE-EEEETTEEE
T ss_pred -------------------ceEEEeCC------------------------------------CCceEEE-EeccCCEEE
Confidence 11111110 0011111 333333333
Q ss_pred -Eeec---CCeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecC-CC--cEEEEeeeCCCceEEEEeeee
Q psy17863 225 -TCST---DECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DG--KIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 225 -~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 295 (341)
.... .+.|..+|+.++.. ...+..|...+. .++++++.|+.... ++ .|++|++. +.....+.. ..
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~----~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~-p~ 369 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL----TVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVAL-PG 369 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE----EEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECC-SS
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE----EEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeec-CC
Confidence 3322 35788899887654 345555655443 56777887776654 43 68889876 444444431 23
Q ss_pred ccceEEEEEcCCCcEEEEeC-C----CcEEEEEcccc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEED 327 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d----~~i~vw~~~~~ 327 (341)
...+..+.+++++..|+... + +.+..|++.++
T Consensus 370 ~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 370 LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 45677888888887666554 4 78999988654
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.58 E-value=1.6e-13 Score=111.74 Aligned_cols=289 Identities=14% Similarity=0.141 Sum_probs=183.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA 97 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 97 (341)
++....++. +..++.++.|..|| .+++....+......+.++...+++. |..++.+ +..+|. +++.+..+....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence 344545554 66667788899999 88887766665555567777766664 5555555 888885 666655554333
Q ss_pred ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 98 SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.......+. +..+..++.++.+..+|.. ++. .........+++.+..++.++.+..+|.. ++......
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence 322333333 4467778888889988876 331 11122233346678888889999999988 66554443
Q ss_pred eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
. ....+.++...+++...+.. +.+..++..... ....+.++...++|. +.+++.++.+..+|. +++.+
T Consensus 174 ~--~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 174 T--NDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp C--SSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEE
T ss_pred c--CCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEe
Confidence 2 23345667777777766655 788888832211 234577778888876 556667788888884 56665
Q ss_pred eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEE
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~ 323 (341)
..+.........+ ...+++ .|..++.+|.|..+|. +++.+..+. .....+.++...+++++.+.+.+|.+++..
T Consensus 248 ~~~~~~~~~~~~~--~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 248 WRFKTGKRIESSP--VIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--TGSWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp EEEECSSCCCSCC--EECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--CSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred EEeeCCCCccccc--eEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--cCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 5555433323333 445455 6777888889999995 777776665 445667788888888866655499999887
Q ss_pred ccccc
Q psy17863 324 AEEDY 328 (341)
Q Consensus 324 ~~~~~ 328 (341)
.+...
T Consensus 322 ~~~~~ 326 (330)
T 3hxj_A 322 NLEHH 326 (330)
T ss_dssp C----
T ss_pred ccccc
Confidence 76544
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=5.2e-13 Score=120.62 Aligned_cols=246 Identities=11% Similarity=0.097 Sum_probs=145.0
Q ss_pred ccCCCEEEEEeCCCe---EEEEc--CC---CcceeeEe------cCcccceeEEEEecCCCEEEEecCC-----CcEEEE
Q psy17863 22 NVDGSYCLTCGSDKK---IKLWN--PY---RNLLLKTY------GGHAHEVNDATAACDSSQIASGASD-----KSVILW 82 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~---i~iw~--~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 82 (341)
+|+|++++....++. -.+|- .. .++....+ .+|...+..++|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998886654432 44554 33 33322221 2233478899999999999876543 469999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
|+.+++.+.. ..+...+..++|+|| +.|+.++.++... .+ .+........|++|++.+.
T Consensus 195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~-----~~--------------~~~~~~~~~~v~~~~lgt~ 253 (741)
T 1yr2_A 195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKE-----GQ--------------AFQALNYNQTVWLHRLGTP 253 (741)
T ss_dssp ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---------------------------CCCCCEEEEEETTSC
T ss_pred ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccc-----cc--------------ccccCCCCCEEEEEECCCC
Confidence 9999987543 112222357899999 8888887665310 00 0000111345666666544
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC-----CeEEEEec
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD-----ECLRLFDK 237 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~ 237 (341)
.....+..... .+...+..+.|+|||++|+..+.+ ..|++||+
T Consensus 254 ~~~~~lv~~~~--------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 254 QSADQPVFATP--------------------------------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp GGGCEEEECCT--------------------------------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred chhCEEEeccC--------------------------------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 32111111100 011235667788888877766654 37999999
Q ss_pred ccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecC----CCcEEEEeeeCCC-ceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 238 ATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 238 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.++ +....+..+....... ++++|+.|+..+. ++.|.+||+.++. ....+.. .+...+..+.|+ ++.+
T Consensus 302 ~~~~~~~~~~l~~~~~~~~~~---~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 302 TNGKIGPVTALIPDLKAQWDF---VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRL 376 (741)
T ss_dssp ETTEECCCEEEECSSSSCEEE---EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEE
T ss_pred CCCCCcccEEecCCCCceEEE---EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEE
Confidence 876 3145555554444333 3478888877665 4559999987752 3344432 445567788887 5667
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
+++.. |+..+||.++
T Consensus 377 v~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 377 FASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEe
Confidence 77777 8888777665
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.58 E-value=2.2e-12 Score=107.04 Aligned_cols=258 Identities=9% Similarity=0.003 Sum_probs=171.6
Q ss_pred cCCCEEEEecCC-----CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec----------CCCeEEEEEecCC
Q psy17863 65 CDSSQIASGASD-----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS----------QDNTVMMWDVKSR 129 (341)
Q Consensus 65 ~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~ 129 (341)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++++.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666542 68999999999999988765555 899999999888876 3678999999886
Q ss_pred CCcC----------------eEEeecCCCceEEEeec--cCeEEEEEccCCcceeeeEeeecC-----ceEEEEEECCCC
Q psy17863 130 SHHP----------------IQCCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGK-----AVVNSLCSHPTR 186 (341)
Q Consensus 130 ~~~~----------------~~~~~~~~~~~~~~~~~--~g~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 186 (341)
+... ......+++.+++++.. ++.|.+.|+.+.+.+..+...... ..-.-+.+++++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 5321 12233445557777653 578999999999887776542110 001124555666
Q ss_pred ceEEEeCC-CceEE-----EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce--eeeecC----------
Q psy17863 187 KHIMSACG-NNVKL-----WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKG---------- 248 (341)
Q Consensus 187 ~~~~~~~~-~~i~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~---------- 248 (341)
+.++.... +.+.. ++... ......+.+.+++..++..+..+.+.+.|...... +..+..
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~---~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTED---ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTT---SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred CEEEEECCCCcEEEEeeeeeccCC---CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence 66555442 22221 11111 11112356788888877777889999999865432 111110
Q ss_pred cccceeEEEEEeCCCCCEEEEecC----------CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc-EEEEeC--
Q psy17863 249 HKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-- 315 (341)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-- 315 (341)
.......+ +++++++.++.... ++.|.++|..+.+.+.++.. ......+.|+||++ +++++.
T Consensus 317 ~p~g~~~v--a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 317 RPGGWQQT--AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp EECSSSCE--EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETT
T ss_pred ccCCceee--EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCC
Confidence 00111123 78899887776542 35799999999999999873 23588999999998 777776
Q ss_pred CCcEEEEEcccccCCcc
Q psy17863 316 GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~~ 332 (341)
++.|.++|+.+....+.
T Consensus 392 s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 392 TQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCCEEEE
Confidence 89999999988765544
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=6.2e-11 Score=94.91 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=157.7
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 132 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 132 (341)
....+.++++.++++..++...++.|.+||.. ++... .+......+..+++.+++++.++...++.|..+|.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-- 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-- 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC--
Confidence 45678899999999988877778999999987 55433 222234678899999999877777667778888765 22
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-----
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----- 206 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----- 206 (341)
+..+... .....+..+++.++++++++.. ++.+..++.....
T Consensus 94 ---------------------~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~ 141 (300)
T 2qc5_A 94 ---------------------FTEYPLP-----------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL 141 (300)
T ss_dssp ---------------------EEEEECS-----------STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEEC
T ss_pred ---------------------eEEecCC-----------CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccC
Confidence 1111110 0113467778888887777665 4667777654211
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
....+..+++.++++++++...++.|..+|. +++.... ...+...+..+ ++++++++.++....+.|.+|+. +
T Consensus 142 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~d~~g~l~v~~~~~~~i~~~~~-~ 217 (300)
T 2qc5_A 142 PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGI--TSGNDGALWFVEIMGNKIGRITT-T 217 (300)
T ss_dssp SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceE--EECCCCCEEEEccCCCEEEEEcC-C
Confidence 2356789999999997776666788999998 5554331 12223334445 78899987777777788999997 5
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
++... +........+.+++++++|+++++.. ++.|..|+..
T Consensus 218 g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 218 GEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 54433 22113456788999999999777776 7899999874
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=3e-13 Score=110.64 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=123.5
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCc---------eee-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQ---------PVR-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
+++.+++++...++++|+.++ +.+|++++.+ ... ....+.. |+.++| +++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999986 6679875433 111 1223566 999999 88888888 7888999988
Q ss_pred cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc
Q psy17863 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 206 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (341)
.+..... .... .
T Consensus 114 ~sl~~~~---------------------------------~~~~--~--------------------------------- 125 (388)
T 1xip_A 114 EELSEFR---------------------------------TVTS--F--------------------------------- 125 (388)
T ss_dssp SSTTCEE---------------------------------EEEE--C---------------------------------
T ss_pred hhhhccC---------------------------------ccce--e---------------------------------
Confidence 7644100 0000 0
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
..++.++.+.+. .+++++.||.|.+||+.++.... +...+.++ +|+|+| ++.|..||++++|+...++.
T Consensus 126 -~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v--~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 126 -EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF--DVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp -SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE--EECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred -ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE--EEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 111223333322 27888999999999999776643 34567766 999999 67888999999999877664
Q ss_pred --eEEEEe----e---eeccceEEEEEcCCCcEEEEeC
Q psy17863 287 --ISTLIH----S---VGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 287 --~~~~~~----~---~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
...+.. . +|...|.++.|.+++.++++-.
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 445521 0 2567899999999999998743
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.55 E-value=1.8e-12 Score=115.24 Aligned_cols=294 Identities=13% Similarity=0.093 Sum_probs=187.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-----------eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----------VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|.-+|..+|+.+.++...... ...+++ ++..+++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 446777777899999999999998887643211 112333 4668888899999999999999998877
Q ss_pred ccc-C----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCCCcCe---------------------------
Q psy17863 94 REH-A----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRSHHPI--------------------------- 134 (341)
Q Consensus 94 ~~~-~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~--------------------------- 134 (341)
..+ . ..+.. ... .+..++.++. ++.|..+|.++++..-.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 1 11111 111 1334555543 68999999887652100
Q ss_pred --------------EEeecCCCceEEEeeccC-------------------eEEEEEccCCcceeeeEeeecC-------
Q psy17863 135 --------------QCCLDSKDSQIFCGSSDG-------------------KIYKWQLVDSSQISTLIHSVGK------- 174 (341)
Q Consensus 135 --------------~~~~~~~~~~~~~~~~~g-------------------~i~~~d~~~~~~~~~~~~~~~~------- 174 (341)
.....+..+.++.++.++ .|..+|..+++....+....+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 012233456777776654 5999999999888776643221
Q ss_pred ceEEEEEECCCC---ceEEEeC-CCceEEEEcccccC-------C-----------CCe---------------------
Q psy17863 175 AVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEEDYG-------Q-----------EPI--------------------- 211 (341)
Q Consensus 175 ~~~~~~~~~~~~---~~~~~~~-~~~i~~~~~~~~~~-------~-----------~~i--------------------- 211 (341)
.....+....+| ..++.+. ++.++++|..+... . .++
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 112222222355 3444444 47777777665430 0 011
Q ss_pred ---EEEEEccCCCEEEEeec-------------------------------------------CCeEEEEeccccceeee
Q psy17863 212 ---VDACFTRDCQCILTCST-------------------------------------------DECLRLFDKATGELLEE 245 (341)
Q Consensus 212 ---~~~~~~~~~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~ 245 (341)
..++++|++.++++... .+.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 14688898888877543 27899999999998877
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C--------
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-------- 316 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------- 316 (341)
+... .+.... .+...+..++.++.||.+++||..+++.+..+.. ++.....-+.|.++|+.+++.. .
T Consensus 473 ~~~~-~~~~~g--~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~ 548 (677)
T 1kb0_A 473 VEHV-SPWNGG--TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLA 548 (677)
T ss_dssp EEES-SSCCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEECCCHHHHHH
T ss_pred cCCC-CCCcCc--ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccCCEEEEeCCEEEEEEeccCCcccccc
Confidence 7532 222222 3445677888899999999999999999999873 2222334455678887554432 2
Q ss_pred ---------CcEEEEEccc
Q psy17863 317 ---------NNVKLWTAEE 326 (341)
Q Consensus 317 ---------~~i~vw~~~~ 326 (341)
+.+.+|.+..
T Consensus 549 ~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 549 ARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCSCSCCCCCEEEEEEETC
T ss_pred ccccccCCCCeEEEEeccc
Confidence 5788888874
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.54 E-value=7.1e-12 Score=111.62 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=177.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc----------e-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|..+|..+|+.+.++...... + ..+.. ++..+++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777788899999999999999887643221 0 11222 3567888899999999999999988776
Q ss_pred ccc--CccEEEEEEcC---CCcEEEEec------CCCeEEEEEecCCCCcCe----------------------------
Q psy17863 94 REH--ASKVTCVKFNE---DSSVVISGS------QDNTVMMWDVKSRSHHPI---------------------------- 134 (341)
Q Consensus 94 ~~~--~~~v~~~~~~~---~~~~l~~~~------~d~~i~iwd~~~~~~~~~---------------------------- 134 (341)
... ......+..+| ++. ++.++ .+|.|..||.++++..-.
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111122 444 44443 368899999887762110
Q ss_pred ------------EEeecCCCceEEEeeccCe-------------------EEEEEccCCcceeeeEeeecC-------ce
Q psy17863 135 ------------QCCLDSKDSQIFCGSSDGK-------------------IYKWQLVDSSQISTLIHSVGK-------AV 176 (341)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~g~-------------------i~~~d~~~~~~~~~~~~~~~~-------~~ 176 (341)
.....+..+.++.++.++. |..+|..+++....+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0122334567778777764 999999999988777643211 11
Q ss_pred EEEEEECCCCc---eEEEeC-CCceEEEEcccccCC--------------------------------------------
Q psy17863 177 VNSLCSHPTRK---HIMSAC-GNNVKLWTAEEDYGQ-------------------------------------------- 208 (341)
Q Consensus 177 ~~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~-------------------------------------------- 208 (341)
........+++ .++.+. ++.++++|..+...-
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 11112222443 444443 477777776543310
Q ss_pred --CCeEEEEEccCCCEEEEeec---------------------------------------------CCeEEEEeccccc
Q psy17863 209 --EPIVDACFTRDCQCILTCST---------------------------------------------DECLRLFDKATGE 241 (341)
Q Consensus 209 --~~i~~~~~~~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~ 241 (341)
.....++++|+..++++... +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00112678888777776532 3789999999999
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
.+..+..+... ..- .+...+.+++.|+.||.++.||.++|+.+.++.. +......-+.|..+|+..++
T Consensus 467 ~~W~~~~~~~~-~~g--~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 467 AAWEVPYVTIF-NGG--TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA-ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEESSSC-CCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEE
T ss_pred eEeEccCCCCc-cCc--cceECCCEEEEECCCCcEEEEECCCCccceeeeC-CCCcccCceEEEECCEEEEE
Confidence 88877654322 211 3445677999999999999999999999998873 22222234567788874443
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=120.59 Aligned_cols=203 Identities=9% Similarity=0.047 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc-EEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-VTC 102 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~ 102 (341)
++..+++++.||.|+.||..+|+.+.+++. +.+.+..+..++..+++++.||.|+.||.++|+.+..++.+... +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 55666566667878888899999999999999887665433211 100
Q ss_pred -EEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEE
Q psy17863 103 -VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 103 -~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
..+. ++..+++++.++.+..||. .+++....+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~---------------------------------~tG~~~w~~~~~~--------- 122 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDL---------------------------------LTGEKQQTLSSAF--------- 122 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECC---------------------------------C---------------------
T ss_pred CceEe-cCCEEEEEeCCCEEEEEEC---------------------------------CCCcEEEEecCCC---------
Confidence 0000 1223444444445555554 4444333221110
Q ss_pred ECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeC
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (341)
...++|++..+++++.|+.|+.||.++++.+..+..+.. ... ++.
T Consensus 123 -------------------------------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--~~~--~~~ 167 (369)
T 2hz6_A 123 -------------------------------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY--AAS--LPE 167 (369)
T ss_dssp -----------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--CCB--CCC
T ss_pred -------------------------------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc--cCc--ccc
Confidence 011234566788888999999999999988776653221 111 333
Q ss_pred CCC---CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce-EEEEEcCCCc
Q psy17863 262 SKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV-NSLCSHPTRK 309 (341)
Q Consensus 262 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~ 309 (341)
.+. ..+++++.||.++.||..+++.+.... ...++ ....+++++.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---YASPVVAFYVWQREGL 216 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---CSSCEEEEEECTTSSC
T ss_pred CCccccceEEEECCCCEEEEEECCCCcEEEEec---CCCceEEEEEecCCce
Confidence 322 467778899999999999999887776 23344 3345556664
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.45 E-value=5.8e-12 Score=102.80 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=155.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCc-------ccceeEEEEec
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AHEVNDATAAC 65 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~ 65 (341)
++.+.++..-..+ .+.++||+++++++. .++.|.+||+.+++.+.++... ......++++|
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 4566777766666 799999999998886 3689999999999999998643 12456789999
Q ss_pred CCCEEEEecC--CCcEEE--EECCCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecC-----CCC----
Q psy17863 66 DSSQIASGAS--DKSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKS-----RSH---- 131 (341)
Q Consensus 66 ~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-----~~~---- 131 (341)
||++++++.. +..+.+ +|..+ +..+... +. ..+.|++ ..+++.+.||.+.+.++.+ ++.
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 9999998875 466888 88876 3444311 11 1122332 3444556677777777765 111
Q ss_pred --------cCeEEeecCCCceEEEeeccCeEEEEEccCCcc--eeeeEeee-----cC---ceEEEEEECCCCceEEEeC
Q psy17863 132 --------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSV-----GK---AVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~ 193 (341)
.+. . ...++.++..+. +.+.+.|...... ...+.... .. .....++++|+++.++++.
T Consensus 207 t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 207 TGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 111 1 444555555556 8999999865321 11111100 00 0011267999988877642
Q ss_pred ----------CCceEEEEccccc------CCCCeEEEEEccCCCE-EEEee-cCCeEEEEeccccceeeeecCcccc
Q psy17863 194 ----------GNNVKLWTAEEDY------GQEPIVDACFTRDCQC-ILTCS-TDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 194 ----------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
++.+.++|..+.. .......++|+|||+. +++.. .++.|.++|+.+++.+..+.....+
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 2466799987765 2235678999999984 55555 5899999999999999988765543
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.44 E-value=6.2e-09 Score=94.92 Aligned_cols=302 Identities=8% Similarity=0.128 Sum_probs=194.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
|.++...+++++.+ ++.++-|..|+..+++..... ......|.++...+++.+.+....+| +..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeec
Confidence 88888888886555 555545888987766543221 12345688888887776554433445 8899987765432221
Q ss_pred c-------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------------CcCeEEeecCCCceEEEeeccC
Q psy17863 95 E-------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 95 ~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g 152 (341)
. ....|.++...+++.+.+ |+.+ -|.+||..+.. ...+..+....++.+..|+.++
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~ 330 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG 330 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence 1 235699999998887554 4444 57788765432 1335556666677888899888
Q ss_pred eEEEEEccCCcceeeeE----eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc---------------CCCCeEE
Q psy17863 153 KIYKWQLVDSSQISTLI----HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY---------------GQEPIVD 213 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~i~~ 213 (341)
-|..++..+........ .......|.++...+++.+.+.+.++.+..|+..... ....|.+
T Consensus 331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 410 (795)
T 4a2l_A 331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKA 410 (795)
T ss_dssp CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEE
T ss_pred CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEE
Confidence 89999876543221111 0112346899999999998888877788888765421 1356888
Q ss_pred EEEccCCCEEEEeecCCeEEEEeccccceeeeec----CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYK----GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 214 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+...++++.|.+|+.++-|.+||..+++...... .....+..+ ..+++|++.+. +. +-+.+|+..+++.. .
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lwig-t~-~Gl~~~~~~~~~~~-~ 485 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI--LPDGEGNLWLG-TL-SALVRFNPEQRSFT-T 485 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE--EECSSSCEEEE-ES-SCEEEEETTTTEEE-E
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE--EECCCCCEEEE-ec-CceeEEeCCCCeEE-E
Confidence 9888898866777777779999988765432211 123345555 67777765544 44 45888987665432 2
Q ss_pred EEe-----eeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 290 LIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 290 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
+.. ......|.++...++|++.+... +.+..|+..++
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~ 527 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL 527 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC
Confidence 221 01236789999999998777665 55778876543
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=1.4e-10 Score=96.25 Aligned_cols=243 Identities=9% Similarity=0.072 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccE---
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV--- 100 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--- 100 (341)
++..++.++.++.|..+|..+++.+................ +..+++++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 35577788889999999999999887776443322222232 4578888889999999999999887765432211
Q ss_pred --EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------------EeecCCCceEEEeeccCeEEEEEcc
Q psy17863 101 --TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------------CCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 101 --~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
...... +..++.++.++.+..+|..+++..-.. ......++.++.++.++.+..+|..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 111222 346778888999999998876531111 1111124578888889999999999
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
+++........ ....+... ++..++...++.+..+|..+.. .......... .+..+++++.+|.+
T Consensus 258 tG~~~w~~~~~----~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp TCCEEEEECCC----CEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred CCcEEeeccCC----CCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 88876554321 12333332 4455555556788888876543 1111222222 24568888899999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
.++|..+++.+..+......+.... .. .+..|+.++.+|.|+.|+
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~-~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEP-VA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCC-EE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCcceeCC-EE--ECCEEEEEeCCCEEEEEe
Confidence 9999999998877765333332210 11 245788889999999987
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=2e-11 Score=99.87 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=135.9
Q ss_pred eeCCcEEEEEEccCCCEEEEEeC-----CCeEEEEcCCCcceeeEecCc------ccceeEEEEecCCCEE-EEec---C
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDSSQI-ASGA---S 75 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~ 75 (341)
.|-..+..++++++++++++-.. ++.|.+||+.+++.+..+... ...+..+++++++..+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35578999999999986665433 578999999988877766432 2356899999865444 5544 5
Q ss_pred CCcEEEEECCCCceeeeecccCccEE-EEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 76 DKSVILWEVTTGQPVRRWREHASKVT-CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
++.|.+||+.+++..+.+..|..... ...+.+++..+.+.+.++.++.|..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~---------------------------- 195 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL---------------------------- 195 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------------
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------------
Confidence 78899999998887776655422110 0233445655655566665544321
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc-------------------cCCCCeEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED-------------------YGQEPIVDAC 215 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~i~~~~ 215 (341)
.+..++++|+++.++.+....-++|.+... .+......++
T Consensus 196 ---------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 196 ---------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp ---------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred ---------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 134566666665555543222233332210 0112345688
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCc-ccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
++++|+++++...++.|.+||..+++........ ......+ ++.++++++++.+..+.+.+|
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~v--a~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSF--NFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEE--EECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCee--EECCCCcEEEEeCcccccccc
Confidence 9999999999888999999998556543333221 2223344 888888887777665555444
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=4e-11 Score=106.63 Aligned_cols=259 Identities=12% Similarity=0.133 Sum_probs=171.2
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccCcc-----------EEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASK-----------VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 135 (341)
+..|++++.++.|..+|..+|+.+.++...... ...+++ ++..++.++.|+.|..+|.++++..-..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777777899999999999998877543210 112233 3567888888999999998887632111
Q ss_pred Ee-------------ecCCCceEEEeec------cCeEEEEEccCCcceeeeEeeecC----------------------
Q psy17863 136 CC-------------LDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVGK---------------------- 174 (341)
Q Consensus 136 ~~-------------~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~---------------------- 174 (341)
.. ....++.+++++. ++.|+.+|..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 11 1112456666664 799999999999988776532211
Q ss_pred --------ceEEEEEECCCCceEEEeCCC--------------------ceEEEEccccc---------C-------CCC
Q psy17863 175 --------AVVNSLCSHPTRKHIMSACGN--------------------NVKLWTAEEDY---------G-------QEP 210 (341)
Q Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~---------~-------~~~ 210 (341)
.....++++|++..++.+..+ .+..+|..+.. + ...
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 111356778888777766542 36666655432 1 112
Q ss_pred eEEEEEccCC---CEEEEeecCCeEEEEeccccceeeeecCcccc-----------ee-----------E----------
Q psy17863 211 IVDACFTRDC---QCILTCSTDECLRLFDKATGELLEEYKGHKSG-----------DF-----------R---------- 255 (341)
Q Consensus 211 i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~-----------~---------- 255 (341)
..-+....+| +.++.++.+|.++++|..+|+.+..+...... +. .
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2223334477 67899999999999999999987665422100 00 0
Q ss_pred -EEEEeCCCCCEEEEecC-------------------------------------------CCcEEEEeeeCCCceEEEE
Q psy17863 256 -IECCLDSKDSQIFCGSS-------------------------------------------DGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 -~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~ 291 (341)
-..+++|++.++++... .|.|..||+.+++.+....
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 01267888888877532 2789999999999888876
Q ss_pred eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+..++....+..++..++.++ |+.+++||..++...
T Consensus 475 ---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 475 ---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp ---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 334455556677788888888 999999999877544
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.42 E-value=6.4e-11 Score=100.71 Aligned_cols=249 Identities=8% Similarity=-0.003 Sum_probs=171.2
Q ss_pred cCCCEEEEEeC-CCeEEEEcCCCcceeeEecC-cccceeEEEE-e-cCCCEEEEec------------------CCCcEE
Q psy17863 23 VDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDATA-A-CDSSQIASGA------------------SDKSVI 80 (341)
Q Consensus 23 ~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~ 80 (341)
+||+++..... ++.|.+.|+.+.+....+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38888877665 56799999999998774432 2245778887 5 8999998884 346799
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC---------------eEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN---------------TVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+.|.++.+...++.-.. ....++++|+|+++++.+.+. .+.+.|...... ....+...
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------~v~~Gk~~ 251 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------AIAAGDYQ 251 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH------HHHHTCSE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE------eccCCCee
Confidence 99999998888776433 346688999999999988663 355555433210 00011111
Q ss_pred EEeeccCeEEEEEccC--Ccc-eeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc--------------
Q psy17863 146 FCGSSDGKIYKWQLVD--SSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------------- 206 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------------- 206 (341)
.. +.+.+.|.++ .+. +..+... ....++.++|||++++++.. +.+.++|+.+..
T Consensus 252 ~i----~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp EE----TTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred EE----CcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 11 5599999988 433 3333322 24678999999999999874 789999998541
Q ss_pred ----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc----------cceeeeecCcccceeE---EEEEeCCCCCEEEE
Q psy17863 207 ----GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT----------GELLEEYKGHKSGDFR---IECCLDSKDSQIFC 269 (341)
Q Consensus 207 ----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 269 (341)
.......++|+|+|...++...|+.|.+||+.+ .+.+.++..|-.+... .....+|||++|++
T Consensus 325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 335678899999995556777899999999887 4566677666543211 11246899999998
Q ss_pred ecC---CCc----------EEEEeeeCCC
Q psy17863 270 GSS---DGK----------IYKWQLVDSS 285 (341)
Q Consensus 270 ~~~---dg~----------i~iwd~~~~~ 285 (341)
... |.. -.++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 743 432 1889985444
No 228
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=3.9e-10 Score=90.94 Aligned_cols=203 Identities=10% Similarity=0.105 Sum_probs=130.2
Q ss_pred eCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeE-ecC----cccceeEEEEecCCCEEEEecCC---------
Q psy17863 12 KQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKT-YGG----HAHEVNDATAACDSSQIASGASD--------- 76 (341)
Q Consensus 12 h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 76 (341)
+...+.+++++++ |+++++.. .+.|.+||.. ++.... ... ....+.+++++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 5567899999999 76555544 4479999987 654332 211 12458899999999887776554
Q ss_pred ------CcEEEEECCCCceeeeecccCccEEEEEEc----CCCcEEEEe-cCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 77 ------KSVILWEVTTGQPVRRWREHASKVTCVKFN----EDSSVVISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 77 ------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+.|..|+.. ++.... ..+......++++ |+++.++.+ ..++.|.+|++....
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g--------------- 209 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--------------- 209 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT---------------
T ss_pred cccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC---------------
Confidence 567777765 544332 2233456788999 888655544 556788888765210
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCC-CCeEEEEEccCCCEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ-EPIVDACFTRDCQCIL 224 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 224 (341)
.+.. ...+.. .+. +. .....++++++|++++
T Consensus 210 -------~~~~--------~~~~~~------------~~~---------------------~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 210 -------KIEN--------KKVWGH------------IPG---------------------THEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp -------EEEE--------EEEEEE------------CCC---------------------CSSCEEEEEEEBTTCCEEE
T ss_pred -------cccc--------ceEEEE------------CCC---------------------CCCCCCCceEECCCCCEEE
Confidence 0000 000000 000 01 2345677888888777
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE-EEecCCCcEEEEeeeC
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVD 283 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 283 (341)
+...++.|.+||..+++.+..+..+...+..+ +++++++.| ++...++.|..|++..
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i--~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEEECSSSCEEEE--EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE--EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 77778899999988787777776665556666 789999855 4555678899998764
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=3.7e-10 Score=90.40 Aligned_cols=194 Identities=13% Similarity=0.173 Sum_probs=121.5
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecC---------CCc
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGAS---------DKS 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---------dg~ 78 (341)
+...+.+++++|+|+++++ . ++.|.+||..+++....... ....++.++++|+|+++++... ...
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 4577999999999995554 4 56799999887764332221 2345889999999997665422 123
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
-.+|.+........+..+......++|+|+++.|+ +.+.++.|..|++.... |.+.
T Consensus 130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~---------------------G~~~-- 186 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT---------------------GQIS-- 186 (297)
T ss_dssp EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT---------------------CCEE--
T ss_pred cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC---------------------Cccc--
Confidence 45555543322222333344568899999998664 45556788888874211 0000
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
....+..... .......++++++|++.++....+.|.+||.
T Consensus 187 ------~~~~~~~~~~---------------------------------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 187 ------NRRSVYKLEK---------------------------------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp ------EEEEEEECCG---------------------------------GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ------CcEEEEECCC---------------------------------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 0000000000 0122455677888887777777888999999
Q ss_pred cccceeeeecCcccceeEEEEEeC-CCCCEEEEec
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLD-SKDSQIFCGS 271 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 271 (341)
.+++.+..+..+...++++ +|. |+++.|+.++
T Consensus 228 ~tG~~~~~i~~p~~~~t~~--~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 228 VTGKRLQTVKLPVDKTTSC--CFGGKNYSEMYVTC 260 (297)
T ss_dssp TTCCEEEEEECSSSBEEEE--EEESGGGCEEEEEE
T ss_pred CCceEEEEEECCCCCceEE--EEeCCCCCEEEEEc
Confidence 9899988888776666666 787 7777665544
No 230
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.40 E-value=2.2e-08 Score=91.25 Aligned_cols=302 Identities=9% Similarity=0.109 Sum_probs=194.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-------cccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-------HAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...|.++...+++.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+| |.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcCC
Confidence 45688888888886555 44444488899876554332211 135699999888886544 44555 8999987
Q ss_pred CCceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------------CcCeEEeecCCCce
Q psy17863 86 TGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------------HHPIQCCLDSKDSQ 144 (341)
Q Consensus 86 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~ 144 (341)
+++...... .....|.++...++|. |..|+.++-|..++..... ...+.++....++.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 765433211 1235799999998886 5566666778888765422 12345555566778
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEe------eecCceEEEEEECCCCc-eEEEeCCCceEEEEccccc-----------
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIH------SVGKAVVNSLCSHPTRK-HIMSACGNNVKLWTAEEDY----------- 206 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~----------- 206 (341)
+..|+.++-|..|+..+......... ......|.++...+++. +.+.+.++.+..++..+..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l 449 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL 449 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence 88899888899999876543322111 11235688999999999 6776666788888876432
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC------cccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
....|.++...++|++.+. +.+ -+.+||..+++....... ....+..+ ..+++|++.+.. . +-+..|+
T Consensus 450 ~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~d~~g~lWigt-~-~Gl~~~~ 523 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL--FRDSHKRLWIGG-E-EGLSVFK 523 (795)
T ss_dssp SCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEE--EECTTCCEEEEE-S-SCEEEEE
T ss_pred CCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEE--EECCCCCEEEEe-C-CceEEEe
Confidence 2356888988888885554 444 488899876654322111 12345555 677888655544 4 5688899
Q ss_pred eeCCCceEEEEe-----eeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 281 LVDSSQISTLIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 281 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
..+++. .+.. ......|.++...++|.+.++... .+..|+..++
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDK 572 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCC
Confidence 877654 2220 123457999999999987665545 5777776543
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=8.7e-11 Score=104.67 Aligned_cols=259 Identities=13% Similarity=0.172 Sum_probs=167.6
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccCcc----------E-EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASK----------V-TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 135 (341)
+..|++++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|.++++..-..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777788899999999999998877543211 0 11222 3557888889999999999887632111
Q ss_pred Ee----------ecC---CCceEEEeec------cCeEEEEEccCCcceeeeEeeec-----------------------
Q psy17863 136 CC----------LDS---KDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVG----------------------- 173 (341)
Q Consensus 136 ~~----------~~~---~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~----------------------- 173 (341)
.. ... .++.++++.. +|.|..||..+++.+..+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 11 111 1456666653 68999999999998877653110
Q ss_pred ------CceEEEEEECCCCceEEEeCCC--------------------ceEEEEccccc---------CC-------CCe
Q psy17863 174 ------KAVVNSLCSHPTRKHIMSACGN--------------------NVKLWTAEEDY---------GQ-------EPI 211 (341)
Q Consensus 174 ------~~~~~~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~---------~~-------~~i 211 (341)
......++++|+...++.+..+ .+..+|..+.. +. .+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 0111256778877777776643 27777766543 11 122
Q ss_pred EEEEEccCCC---EEEEeecCCeEEEEeccccceeeeecCccc-cee-------------------------E-------
Q psy17863 212 VDACFTRDCQ---CILTCSTDECLRLFDKATGELLEEYKGHKS-GDF-------------------------R------- 255 (341)
Q Consensus 212 ~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~-------------------------~------- 255 (341)
.......+|+ .++.++.+|.++++|.++|+.+...+.... ... .
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2222333565 788999999999999999988743321110 000 0
Q ss_pred ----EEEEeCCCCCEEEEecC---------------------------------------------CCcEEEEeeeCCCc
Q psy17863 256 ----IECCLDSKDSQIFCGSS---------------------------------------------DGKIYKWQLVDSSQ 286 (341)
Q Consensus 256 ----~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~ 286 (341)
-..+++|+..++++... +|.|+.||+.+++.
T Consensus 388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~ 467 (689)
T 1yiq_A 388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA 467 (689)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence 01367787777776421 47899999999999
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+.... . ..+...-.+...+.+++.++ |+.++.||.+++...
T Consensus 468 ~W~~~--~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 468 AWEVP--Y-VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEE--E-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EeEcc--C-CCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 88887 2 23344445666788888999 999999999887544
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.38 E-value=3.3e-11 Score=98.05 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=158.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+...+.++...+++. +..++.+ |..+|. +++.+..+...........+. +..+..++.++.+..+|.. ++...
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 334556777777775 4444544 888886 666655554333333334443 5567778888999999988 77776
Q ss_pred eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
....+...+.++...+++. ++.++.++.+..+|.. ++. ..+.......++.+..++ +.+..+| .+++
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc
Confidence 6665555566677777776 5667778899999877 331 111222233455666666 8889999 5655
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
....... ....+.++...+++...+.+.++.+..++..... ....+..+.+.+++. |.+++.+|.|..+|.
T Consensus 206 ~~~~~~~--~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 206 EKWNFYA--GYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEECC--SSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EEEEEcc--CCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 5444332 2345777888888888887777777777643221 122233445555565 667778888999996
Q ss_pred cccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++.+..+......+..+ ..++++ .|..++.+|.+++...+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~--~~d~~g-~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATP--VIDENG-TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -TSCEEEEEECSSCCCSCC--EECTTC-CEEEECTTSCEEEEEC--
T ss_pred -CCcEEEEEEcCCccccce--EEcCCC-EEEEEcCCCeEEEEeccc
Confidence 677666665444444444 555666 466688999999877543
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.35 E-value=2.4e-09 Score=88.06 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=65.9
Q ss_pred cCCCEEEE-EeCCCeEEEEcCCCc----ceeeEec-------CcccceeEEEEecCCCEEEEecCC------CcEEEEEC
Q psy17863 23 VDGSYCLT-CGSDKKIKLWNPYRN----LLLKTYG-------GHAHEVNDATAACDSSQIASGASD------KSVILWEV 84 (341)
Q Consensus 23 ~~~~~l~t-~~~dg~i~iw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~ 84 (341)
+++++|+. +..++.|.++|+.+. +..+++. .....-..+...|++ .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887775 455789999998755 5556552 111234567788999 76666555 78999999
Q ss_pred CCCceeeeecccCc---cEEEEEEcCCCcEEEEec
Q psy17863 85 TTGQPVRRWREHAS---KVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 85 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~ 116 (341)
++.+.+.++..... .-..+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 99999988863222 234578899999888874
No 234
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=9.3e-11 Score=105.04 Aligned_cols=215 Identities=15% Similarity=0.197 Sum_probs=124.4
Q ss_pred CcccceeEEEEecCCCEEEEe-----cCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 53 GHAHEVNDATAACDSSQIASG-----ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
++...+..++|+|||++|+.+ +....|++||+++++.+... .+......++|+ |++.|+.++.+.. .
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~------~ 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKP------D 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCC------C
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCc------c
Confidence 355578889999999998843 33467999999999865431 111113567899 9998888876632 0
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
. ..+........|++|++.+............. .+
T Consensus 198 ~--------------~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~-------------------------------~~ 232 (693)
T 3iuj_A 198 G--------------SELSARTDQHKVYFHRLGTAQEDDRLVFGAIP-------------------------------AQ 232 (693)
T ss_dssp ---------------------CCCCEEEEEETTSCGGGCEEEESCSG-------------------------------GG
T ss_pred c--------------ccccccCCCcEEEEEECCCCcccceEEEecCC-------------------------------CC
Confidence 0 00000011234666666554322111111000 00
Q ss_pred CCCeEEEEEccCCCEEEEee----cCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEE-EecC---CCcEEE
Q psy17863 208 QEPIVDACFTRDCQCILTCS----TDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIF-CGSS---DGKIYK 278 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---dg~i~i 278 (341)
......+.++|||++|+... ..+.|+++|+.++. ....+..+....... +++++..|+ .... .+.|..
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~---~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL---VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE---EEEETTEEEEEECTTCTTCEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE---EeccCCEEEEEECCCCCCCEEEE
Confidence 11234555666666654332 23589999987763 345555555444332 445555544 4433 367999
Q ss_pred EeeeCCCc--eEEEEeeeeccceEEEEEcCCCcEEEEeC--CC--cEEEEEcccc
Q psy17863 279 WQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GN--NVKLWTAEED 327 (341)
Q Consensus 279 wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~vw~~~~~ 327 (341)
+++.++.. ...+. .+...+. .|+++++.|+... ++ .|++|++.++
T Consensus 310 ~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 310 VDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 99887755 34555 4544454 8899999888777 54 6888888643
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=1.3e-09 Score=87.52 Aligned_cols=207 Identities=11% Similarity=0.058 Sum_probs=125.7
Q ss_pred ceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
..+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34455555556678899999998 5667777899999997 454 34555566778999999999977766666778877
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
+.. ++ +..+ .......
T Consensus 113 ~~~-g~-----------------------~~~~-----------~~~~~~~----------------------------- 128 (305)
T 3dr2_A 113 DAD-GQ-----------------------AHLL-----------VGRYAGK----------------------------- 128 (305)
T ss_dssp CTT-SC-----------------------EEEE-----------ECEETTE-----------------------------
T ss_pred CCC-CC-----------------------EEEE-----------EeccCCC-----------------------------
Confidence 754 22 0000 0000000
Q ss_pred ccCCCCeEEEEEccCCCEEEE----eec-------------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 205 DYGQEPIVDACFTRDCQCILT----CST-------------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
....+..++++|+|+++++ |.. .+.|..+|..+++..... .......+ +++|+++.|
T Consensus 129 --~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl--~~spdg~~l 202 (305)
T 3dr2_A 129 --RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL--AFSPDEQTL 202 (305)
T ss_dssp --ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE--EECTTSSEE
T ss_pred --ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce--EEcCCCCEE
Confidence 0112334455555555554 221 246777777666543322 22223344 899999988
Q ss_pred EEecCC------CcEEEEeeeCCCceEEEE--eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 268 FCGSSD------GKIYKWQLVDSSQISTLI--HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 268 ~~~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+.+... +.|++|++..+. +.... ..........++++++|++.++..+ .|.+|+.+.
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDG 267 (305)
T ss_dssp EEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTS
T ss_pred EEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCC
Confidence 777654 789999987654 22111 0012334567899999995554434 488888754
No 236
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.7e-07 Score=85.37 Aligned_cols=304 Identities=11% Similarity=0.112 Sum_probs=189.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+ ++.++-+..||..+++...... -....|.++...+++.+.+. +.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 4578888877776544 5556468889977654332111 01346888888887765554 444 489999876
Q ss_pred Cceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------------------cCeEEe
Q psy17863 87 GQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------------------HPIQCC 137 (341)
Q Consensus 87 ~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------~~~~~~ 137 (341)
++...... .....|.++...+++. |..|+..+-|.++|..+... ..+..+
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 65432211 1245689999888876 45555545677777654321 223444
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeE-------eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc----
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY---- 206 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 206 (341)
....++.+..|+.++-|..++........... .......|.++...+++.+.+.+.++.+..++.....
T Consensus 319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC
T ss_pred EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEc
Confidence 55556678888888888888876544322211 1112356899999999988887767778888765421
Q ss_pred ------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec--CcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 207 ------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 207 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
....|.++...+++.+ .+|+.++-+..+|..+++...... .....+..+ ..+++++ |..|+. +-+..
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF--YEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp -----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE--EECTTSE-EEEEET-TEEEE
T ss_pred cCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE--EECCCCC-EEEEEC-CceEE
Confidence 2356888888888874 456766778999987665432211 123445555 6677775 444555 55888
Q ss_pred EeeeCCCceEEEEee---eeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 279 WQLVDSSQISTLIHS---VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 279 wd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+|..+++........ .....|.++...++|.+.+...++-+..|+..+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 474 IDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp EESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred EeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 997766543322210 113579999999999887766534466677654
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.31 E-value=6.1e-10 Score=94.80 Aligned_cols=275 Identities=11% Similarity=0.084 Sum_probs=163.0
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecCc---------------------------------------ccceeEEEEec---
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGGH---------------------------------------AHEVNDATAAC--- 65 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~--- 65 (341)
|.+|+..|.++|+-+.+++.++.+... .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 668888999999987777666554210 01122244444
Q ss_pred --CCCEEEEecC-CCcEEEEECCCCceeeeecc-cCccEEEEEE-c-CCCcEEEEecC------------------CCeE
Q psy17863 66 --DSSQIASGAS-DKSVILWEVTTGQPVRRWRE-HASKVTCVKF-N-EDSSVVISGSQ------------------DNTV 121 (341)
Q Consensus 66 --~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i 121 (341)
||++++.... ++.|.+.|+.+.++...+.- .......+++ + |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888777655 56799999999998774432 2345788888 5 89999998852 3456
Q ss_pred EEEEecCCCCc--------CeEEeecCCCceEEEeeccC---------------eEEEEEccCCcceeeeEeeecCceEE
Q psy17863 122 MMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSDG---------------KIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 122 ~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~g---------------~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
.+.|..+.+.. +-.....+++.++++.+.+. .+.++|.....
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--------------- 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--------------- 242 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH---------------
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee---------------
Confidence 66666653311 11111222223333333221 12222211110
Q ss_pred EEEECCCCceEEEeCCCceEEEEcccccC---------CCCeEEEEEccCCCEEEEee-cCCeEEEEeccccc-------
Q psy17863 179 SLCSHPTRKHIMSACGNNVKLWTAEEDYG---------QEPIVDACFTRDCQCILTCS-TDECLRLFDKATGE------- 241 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------- 241 (341)
...++|+.... +.+.+.|...... ......+.++|||+++++++ .+.+|.++|+.+.+
T Consensus 243 --~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 243 --KAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp --HHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred --EeccCCCeeEE---CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 01122322222 3477777766211 12345689999999877655 57889999998653
Q ss_pred -----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC----------CCceEEEEeeeeccc-----eEE
Q psy17863 242 -----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD----------SSQISTLIHSVGKAV-----VNS 301 (341)
Q Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~-----v~~ 301 (341)
...+...-.+ . ...+|+++|...++...|+.|.+||+.+ .+.+.++. .|..+ -..
T Consensus 318 ~~~~~v~~~v~vG~g-P--~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid--V~yqpGh~~~~~g 392 (595)
T 1fwx_A 318 DPRSAVVAEPELGLG-P--LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD--VHYQPGHLKTVMG 392 (595)
T ss_dssp CGGGGEEECCBCCSC-E--EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE--CSSCEEEEEETTT
T ss_pred CcccceEEEcCCCCC-c--ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee--cccccccceeccc
Confidence 2333332222 2 3348999995455677899999999987 45666666 33222 223
Q ss_pred EEEcCCCcEEEEeC--C-CcE-----------EEEEcccc
Q psy17863 302 LCSHPTRKHIMSAC--G-NNV-----------KLWTAEED 327 (341)
Q Consensus 302 ~~~~~~~~~l~~~~--d-~~i-----------~vw~~~~~ 327 (341)
+.++|||++|+++. . .++ .++|+.++
T Consensus 393 ~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 393 ETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred eEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 35689999999987 3 445 88998544
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=2e-09 Score=95.64 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc----------e-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|.-+|..+|+.+.++...... + ..+++ .+..+++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777788999999999999998887533211 0 11222 3557888889999999999999988776
Q ss_pred cccC----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCC
Q psy17863 94 REHA----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRS 130 (341)
Q Consensus 94 ~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 130 (341)
.... ..+.. .... ++ .++.+.. +|.|..+|.++++
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 5421 11111 0111 34 4555443 5889999988776
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=7.8e-09 Score=85.09 Aligned_cols=202 Identities=10% Similarity=0.117 Sum_probs=124.8
Q ss_pred cCCCEEEE-ecCCCcEEEEECCCC----ceeeeec------c-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc
Q psy17863 65 CDSSQIAS-GASDKSVILWEVTTG----QPVRRWR------E-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 132 (341)
Q Consensus 65 ~~~~~l~~-~~~dg~i~iw~~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 132 (341)
+++++|++ +..++.|.++|+.+. +...+++ . ....-..+..+|++ .++++..+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~------------- 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE------------- 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------------
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------------
Confidence 77777665 556789999998755 4455542 1 11244567778888 555544331
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeE
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 212 (341)
.|...|.+.++|..+.+.+......... ..--.
T Consensus 159 --------------~g~~~g~v~vlD~~T~~v~~~~~~~~~~---------------------------------~~~~Y 191 (462)
T 2ece_A 159 --------------EGEGPGGILMLDHYSFEPLGKWEIDRGD---------------------------------QYLAY 191 (462)
T ss_dssp --------------TSCSCCEEEEECTTTCCEEEECCSBCTT---------------------------------CCCCC
T ss_pred --------------CCCCCCeEEEEECCCCeEEEEEccCCCC---------------------------------ccccc
Confidence 0122355666666665555544322111 01112
Q ss_pred EEEEccCCCEEEEee-------------------cCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEec
Q psy17863 213 DACFTRDCQCILTCS-------------------TDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 213 ~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.+-|+|+++.+++.. .+.+|.+||+.+++.+.++.... .....+.++++|++++++.++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 344566666666653 36789999999888888776532 223345456799999988776
Q ss_pred ------CCCcEEEEeeeCCCce--EEEEeeee----------------ccceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 272 ------SDGKIYKWQLVDSSQI--STLIHSVG----------------KAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 272 ------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
.+++|.+|....++.. ..+..... ......+.+||||++|.++. .+.|.+|++.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 5678988887654321 11110010 24578899999999999888 8899999997
Q ss_pred cc
Q psy17863 326 ED 327 (341)
Q Consensus 326 ~~ 327 (341)
..
T Consensus 352 d~ 353 (462)
T 2ece_A 352 NP 353 (462)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 240
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=4.9e-09 Score=87.59 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=75.7
Q ss_pred EEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEe----cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 19 VRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTY----GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
++|+|+++.|+++..++ .|.+++...+.....+ ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999988888766 7999987765544444 22456678899999555566677788999999987653222
Q ss_pred ----ecccCccE--EEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 93 ----WREHASKV--TCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 93 ----~~~~~~~v--~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
..++...- ..++|+| ++.++++-..++.|+.|+..
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 12222222 2899999 46666666667788888754
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=5.2e-09 Score=80.85 Aligned_cols=207 Identities=12% Similarity=-0.021 Sum_probs=129.0
Q ss_pred cceeeEecCccc--ceeEEEEecCCCEEEEecC--CCcEEEEECCCCceeeeecccCc-cEEEEEEcCCCcEEEEe-cCC
Q psy17863 45 NLLLKTYGGHAH--EVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISG-SQD 118 (341)
Q Consensus 45 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d 118 (341)
.+.+.++. |.. ....+.|++++.+.++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.|+.+ -.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34556665 443 3578999998755444443 57899999999998887652221 12234443 2233332 233
Q ss_pred CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceE
Q psy17863 119 NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198 (341)
Q Consensus 119 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (341)
+ .+.++|..+.+.+..+... . |.+
T Consensus 86 ~---------------------------------~v~viD~~t~~v~~~i~~g-~----------~~g------------ 109 (266)
T 2iwa_A 86 N---------------------------------IGFIYDRRTLSNIKNFTHQ-M----------KDG------------ 109 (266)
T ss_dssp S---------------------------------EEEEEETTTTEEEEEEECC-S----------SSC------------
T ss_pred C---------------------------------EEEEEECCCCcEEEEEECC-C----------CCe------------
Confidence 4 4455555554444443221 0 111
Q ss_pred EEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc--c---eeEEEEEeCCCCCEEEEecCC
Q psy17863 199 LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS--G---DFRIECCLDSKDSQIFCGSSD 273 (341)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~~d 273 (341)
..+++||+.++++..++.|.++|..+.+.+..+..... + ...+ .+. ++...+....+
T Consensus 110 ---------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel--e~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 110 ---------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL--EYI-NGEVWANIWQT 171 (266)
T ss_dssp ---------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTS
T ss_pred ---------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE--EEE-CCEEEEecCCC
Confidence 22455666677777788999999999888777763321 1 2334 444 66555555568
Q ss_pred CcEEEEeeeCCCceEEEEeeee-----------ccceEEEEEcCCCcEEE-EeC-CCcEEEEEccccc
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVG-----------KAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~~ 328 (341)
+.|.+.|..+++.+..+...+. ....+.++|+|+++.|. ++. .+.+.+.++.+..
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 8999999999999998873211 13568999999986555 454 8889888887643
No 242
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=9.1e-09 Score=83.40 Aligned_cols=188 Identities=10% Similarity=0.020 Sum_probs=115.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecC------CCcEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGAS------DKSVIL 81 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 81 (341)
+...+.+++|+|+|+++++. .+ .|.+||..+++....... ....+..++++|+|+++++... .+.|..
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 35679999999999877764 44 499999887765332221 1246889999999987665432 234555
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEec--CC-CCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVK--SR-SHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
++ +++.. .+..+......++|+|+++.++.+ +.++.|.+|++. ++ ..... .+ +.
T Consensus 166 ~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~------------------~~-~~ 223 (326)
T 2ghs_A 166 VA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA------------------EV-FI 223 (326)
T ss_dssp EE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC------------------EE-EE
T ss_pred Ee--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc------------------eE-EE
Confidence 55 44433 332333456789999999866544 456788888875 22 10000 00 00
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
+... .......++++++|+++++...++.|.+||.
T Consensus 224 ~~~~---------------------------------------------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 224 DSTG---------------------------------------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp ECTT---------------------------------------------SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ECCC---------------------------------------------CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 0000 0112345667777776666666788999998
Q ss_pred cccceeeeecCcccceeEEEEEeC-CCCCEEEEec
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLD-SKDSQIFCGS 271 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 271 (341)
+++.+..+..+...+..+ +|+ ++++.|+.++
T Consensus 259 -~g~~~~~i~~~~~~~~~~--af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 259 -DGNHIARYEVPGKQTTCP--AFIGPDASRLLVTS 290 (326)
T ss_dssp -TCCEEEEEECSCSBEEEE--EEESTTSCEEEEEE
T ss_pred -CCCEEEEEECCCCCcEEE--EEecCCCCEEEEEe
Confidence 577777776665556666 777 7777665544
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=105.24 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 66 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++..+++++.||.|+.||..+|+.+..++. +.+.+..+..++..+++++.||.|..||.++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------------- 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------------- 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC--------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce--------------
Confidence 577899999999999999999999888775 4444444555666677777788888887765441
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
+......... .+ ...++ +. ++..+++
T Consensus 72 -------------------~w~~~~~~~~-~~-----------------------------~~sp~----~~-~~~~v~~ 97 (369)
T 2hz6_A 72 -------------------LTKLPFTIPE-LV-----------------------------QASPC----RS-SDGILYM 97 (369)
T ss_dssp -------------------SEECSCCHHH-HH-----------------------------TTCSC----C------CCC
T ss_pred -------------------eeeeeccCcc-cc-----------------------------ccCce----Ee-cCCEEEE
Confidence 1111000000 00 00000 01 2334777
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
++.++.++.||.++|+.+..+..+.. . ..+|++..+++++.|+.|+.||..+++.+..+..... ...++.
T Consensus 98 g~~dg~v~a~D~~tG~~~w~~~~~~~----~--~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~ 167 (369)
T 2hz6_A 98 GKKQDIWYVIDLLTGEKQQTLSSAFA----D--SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPE 167 (369)
T ss_dssp CEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCC
T ss_pred EeCCCEEEEEECCCCcEEEEecCCCc----c--cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCcccc
Confidence 88899999999999999887765542 1 3445788999999999999999999998877762121 223344
Q ss_pred CCC---cEEEEeC-CCcEEEEEccccc
Q psy17863 306 PTR---KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~---~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++. ..+++++ ||.|+.||..++.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCccccceEEEECCCCEEEEEECCCCc
Confidence 432 3455556 9999999987664
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=7.4e-08 Score=75.68 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=140.1
Q ss_pred CEEEEEeCCCeEEEEcCCCccee-----eEecCcccceeEEEEecCCCEEEE-ecCCCcEEEEECCCCceeeeecccCcc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLL-----KTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASK 99 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~ 99 (341)
++|+.+. .+.|+.+++...... ..+.........++|++++..|+. -..++.|..++...+.....+......
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 4455554 347888887654321 122222345789999997665554 455789999998765543333322346
Q ss_pred EEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEE
Q psy17863 100 VTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 100 v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
...+++++++..|+ +-...+.|.++++....... .. ........
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~---~~--------------------------------~~~~~~P~ 125 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---LF--------------------------------DTGLVNPR 125 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE--------------------------------CSSCSSEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE---EE--------------------------------ECCCCCcc
Confidence 78899998654444 44556778777765422100 00 00112345
Q ss_pred EEEECCCCceEEEeC-C---CceEEEEccccc-------CCCCeEEEEEccCCCEEE-EeecCCeEEEEeccccceeeee
Q psy17863 179 SLCSHPTRKHIMSAC-G---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~-~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
.++++|++..+..+. . +.|..++++... .......++++|++..|+ +-...+.|.++|.........+
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence 666776444333322 1 345555544321 123567899999876555 4445678999998755443333
Q ss_pred cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
..... ...+ +.. ++..+++....+.|..+|..+++.+..+.. +.......+++.|++.
T Consensus 206 ~~~~~-P~gi--~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~-g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 206 EGLQY-PFAV--TSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALSQC 263 (267)
T ss_dssp ECCCS-EEEE--EEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC-SSCCCCCCEEEECSCC
T ss_pred cCCCC-ceEE--EEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc-ccccccceeeecCccC
Confidence 32222 2334 444 344455555678999999988988888762 1122467788888764
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=2e-07 Score=84.88 Aligned_cols=303 Identities=9% Similarity=0.076 Sum_probs=186.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+. +.+ -+.+||..+++...... .....|.++...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 56889988888875554 444 58899977655432211 1235688998887775 55556544588899876
Q ss_pred Cceeeeec--------------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------------CcCeE
Q psy17863 87 GQPVRRWR--------------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------------HHPIQ 135 (341)
Q Consensus 87 ~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~ 135 (341)
++...... .....|.++...++|. |..|+.++-|..++..... ...+.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 64322111 1345789999988876 5666666677777765432 12244
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeE-eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------- 206 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 206 (341)
.+....++.+..|+.++-|..++..+........ .......|.++...+++.+.+...++.+..++.....
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTT
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCC
Confidence 4455556778888877788888876543221110 1123356889999999988887777778888765321
Q ss_pred -CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc-----ccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 207 -GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-----KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 207 -~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
....|.++...+++.+.+ |+. +-|..||..+++........ ...+..+ ..+++|++.+ |+.++-+..+|
T Consensus 447 ~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI--AQDSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp TCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE--EECTTCCEEE-EESSSCEEEEC
T ss_pred CCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEE--EEcCCCCEEE-EEcCCCEEEEe
Confidence 235688888888887544 455 45888998766543322211 2345555 6778776544 55544477788
Q ss_pred eeCCCceEEEEe--eeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 281 LVDSSQISTLIH--SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 281 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
..+++ ...+.. ......|.++...++|.+.++..+|-+..|+..+
T Consensus 522 ~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 522 PDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp TTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 65543 333321 0123578999999999877765555436676554
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.23 E-value=8e-09 Score=79.82 Aligned_cols=161 Identities=4% Similarity=0.003 Sum_probs=106.9
Q ss_pred ceeeeEEeeeCCc--EEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEecCccc-ceeEEEEecCCCEEE-EecCC
Q psy17863 3 YTCVQTIDCKQGA--IRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQIA-SGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d 76 (341)
++.++++. |... ...++|+|++.++++.+. ++.|.+.|+.+++.+..+.-... ....+++. ++.|+ +.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 45666775 6543 689999998765555543 57999999999999888753221 22344554 44554 44568
Q ss_pred CcEEEEECCCCceeeeeccc-CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCC
Q psy17863 77 KSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKD 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~ 142 (341)
+.+.++|..+.+.+.++... ... ..+++|++.++.+..++.|.++|..+.+.... ..+... +
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 99999999999998888633 222 33555777777777789999999887552111 111222 3
Q ss_pred ceEEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 143 SQIFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 143 ~~~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+.+++.. .++.|.+.|..+++....+..
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 3444444 578899999988887776654
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.22 E-value=2.6e-08 Score=86.77 Aligned_cols=281 Identities=11% Similarity=0.052 Sum_probs=165.3
Q ss_pred CCEEEEEeC-CCeEEEEcC-CCcceeeEecCcccc-----------eeEEEEecCCCE----EEEecCCCcEEEEECCCC
Q psy17863 25 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAHE-----------VNDATAACDSSQ----IASGASDKSVILWEVTTG 87 (341)
Q Consensus 25 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~ 87 (341)
+..+++++. ++.|.-+|. .+++.+.++...... ...+++.|.+.. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446667777 889999999 899998887533211 123455444444 888889999999999999
Q ss_pred ceeeeecccCc----cEEE-EEEcCCCcEEEEec------CCCeEEEEEecCCCCcCeE---------------------
Q psy17863 88 QPVRRWREHAS----KVTC-VKFNEDSSVVISGS------QDNTVMMWDVKSRSHHPIQ--------------------- 135 (341)
Q Consensus 88 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~--------------------- 135 (341)
+.+........ .+.+ .... ++ .++.++ .++.|..+|.++++..-..
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98876543210 1111 1111 34 455554 3789999998887621000
Q ss_pred --------------------------EeecCCCceEEEeecc----------------CeEEEEEccCCcceeeeEeeec
Q psy17863 136 --------------------------CCLDSKDSQIFCGSSD----------------GKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 136 --------------------------~~~~~~~~~~~~~~~~----------------g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
.......+.++.++.+ +.|..+|.++++....+....+
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0112344566666654 4899999999988877665432
Q ss_pred Cc-------eEEEEEEC-CCC---ceEEEe-CCCceEEEEccccc--------------------CCCCe----------
Q psy17863 174 KA-------VVNSLCSH-PTR---KHIMSA-CGNNVKLWTAEEDY--------------------GQEPI---------- 211 (341)
Q Consensus 174 ~~-------~~~~~~~~-~~~---~~~~~~-~~~~i~~~~~~~~~--------------------~~~~i---------- 211 (341)
.. ...-+... .++ +.++.+ .++.+.++|..+.. ...++
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 10 11111111 345 334433 34666666654422 00111
Q ss_pred ----------------EEEEEccCCCEEEEee---------------------------------------cCCeEEEEe
Q psy17863 212 ----------------VDACFTRDCQCILTCS---------------------------------------TDECLRLFD 236 (341)
Q Consensus 212 ----------------~~~~~~~~~~~l~~~~---------------------------------------~d~~i~i~d 236 (341)
..++++|+..++++.. ..|.|..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 2356666655554421 347899999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEE
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 311 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 311 (341)
+.+++.+.+.+... +...- .+...+.+++.++.||.++.||.++|+.+.++... ......-+.+..+|+..
T Consensus 460 ~~tG~~~W~~~~~~-~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~-~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 460 AITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP-SGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp TTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEE
T ss_pred CCCCCEEeEecCCC-CccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC-CCcEeccEEEEeCCEEE
Confidence 99998876664211 11110 12234668888999999999999999999888731 11112234556677643
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=4.1e-09 Score=93.72 Aligned_cols=261 Identities=8% Similarity=0.073 Sum_probs=148.0
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcc----cceeE-EEEecCCCEEEEecC------CCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA----HEVND-ATAACDSSQIASGAS------DKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 93 (341)
+..++.++.|+.|..+|..+|+.+.++.... ..+.+ .... ++ .++++.. +|.|..+|.++|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567888889999999999999988876421 11111 1111 34 5555543 589999999999988776
Q ss_pred cccC-------------------------------ccEEEEEEcCCCcEEEEecCCCe-------------------EEE
Q psy17863 94 REHA-------------------------------SKVTCVKFNEDSSVVISGSQDNT-------------------VMM 123 (341)
Q Consensus 94 ~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~-------------------i~i 123 (341)
.... .....+++.|+...++.+..++. |..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 01124678887788888877663 888
Q ss_pred EEecCCCCcCeE-----------------Eee-cCCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecC--------
Q psy17863 124 WDVKSRSHHPIQ-----------------CCL-DSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-------- 174 (341)
Q Consensus 124 wd~~~~~~~~~~-----------------~~~-~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------- 174 (341)
+|.++++..-.. ... ...+ ..++.++.+|.++++|..+++.+.........
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 888776521111 000 0112 15888899999999999999887544321100
Q ss_pred --ceE------------------------EEEEECCCCceEEEeCCCceEEEEccccc-CC-CCeEEEEEccCCCEEE-E
Q psy17863 175 --AVV------------------------NSLCSHPTRKHIMSACGNNVKLWTAEEDY-GQ-EPIVDACFTRDCQCIL-T 225 (341)
Q Consensus 175 --~~~------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~i~~~~~~~~~~~l~-~ 225 (341)
.++ ..++++|+...+.+........+...... .. ..+ .+.....+...+ .
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF-NTAAGFADATDVPA 433 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC-CCSSCGGGCCCCCG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc-ccCccccccCCCCC
Confidence 000 00222333222222211111111110000 00 000 000000000011 2
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
...+|.|..||+.+++.+.+...+.. .... .+...+.+++.++.||.++.||.++++.+..+.
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~--~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPTH-WNGG--TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSS-CCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccceEEEEeCCCCcEEEEccCCCC-CcCc--eeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 22458899999999998777654322 2211 233457789999999999999999999998887
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.20 E-value=9e-09 Score=78.57 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=106.8
Q ss_pred ceeeeEEeeeCCc--EEEEEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCC
Q psy17863 3 YTCVQTIDCKQGA--IRAVRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDK 77 (341)
Q Consensus 3 ~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 77 (341)
++.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+++++.+.++... .........++++.|... -.++
T Consensus 31 ~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 45667774 6543 4789998 677777777766 8999999999998888643 333333333345555544 4588
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCCce
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKDSQ 144 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~ 144 (341)
.+.+||.++.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+.... ..+.... +.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~-G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD-GE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET-TE
T ss_pred EEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC-CE
Confidence 9999999999999888753322 2333 5677777777688899999887552111 1122223 34
Q ss_pred EEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 145 IFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 145 ~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+.+.. .++.|.+.|..+++....+..
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 44444 577888888888887766654
No 250
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.16 E-value=1.9e-08 Score=89.57 Aligned_cols=269 Identities=8% Similarity=0.020 Sum_probs=144.8
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------eEEEEcCCCccee--eEec-CcccceeEEEEecCCCEEEEecC-CCcEEE
Q psy17863 18 AVRFNV-DGSYCLTCGSDK-----------KIKLWNPYRNLLL--KTYG-GHAHEVNDATAACDSSQIASGAS-DKSVIL 81 (341)
Q Consensus 18 ~~~~~~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 81 (341)
+.++.+ ++++++.|+.+. .+.+||+.+++.. ..+. .+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 6889998876532 2222 12333445777889999999884 468999
Q ss_pred EECCCCceeeeecccC-ccEEEEEEcCCCcEEEEec-CC-----CeEEEEEecCCCCcCe--------E-----EeecCC
Q psy17863 82 WEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGS-QD-----NTVMMWDVKSRSHHPI--------Q-----CCLDSK 141 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~--------~-----~~~~~~ 141 (341)
||..+++....-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+..-..+ . ......
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998765433211111 1123455667899999988 34 5688999876542111 0 011122
Q ss_pred CceEEEeeccCe---------EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeE
Q psy17863 142 DSQIFCGSSDGK---------IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212 (341)
Q Consensus 142 ~~~~~~~~~~g~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 212 (341)
+...+.++.+|. +..||..+............ +.. .......-.
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~------------~~~---------------~~~~~~~~~ 402 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS------------NRG---------------VAPDAMCGN 402 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE------------TTE---------------ECCCCBTCE
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc------------ccc---------------cCCCCCCCc
Confidence 333444544443 44555544332211110000 000 000001112
Q ss_pred EEEEc-cCCCEEEEeecCC-----------eEEEEeccccceeeee--cCcccceeEEEEEeCCCCCEEEEecCC-----
Q psy17863 213 DACFT-RDCQCILTCSTDE-----------CLRLFDKATGELLEEY--KGHKSGDFRIECCLDSKDSQIFCGSSD----- 273 (341)
Q Consensus 213 ~~~~~-~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d----- 273 (341)
++.+. .++++++.|+.++ .+.+||..+.+-.... ..+..... ...+..++++.++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-HTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-CEEEECTTSCEEEECCBSBCCTT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-CCeEECCCCCEEEECCcccCcCc
Confidence 23332 3566677776432 6788887765433222 11222111 122566789999998854
Q ss_pred ------CcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeC
Q psy17863 274 ------GKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 274 ------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
..+.+||..+.+.. .+... ..........+.|++++++.|+
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCcccceEEEcCCCCcee-ecCCCCCccccccHhhcCCCcEEEecCC
Confidence 46899998775432 22210 1122223455679999999988
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.15 E-value=1.8e-08 Score=87.86 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccc----ceeE-EEEecCCCEEEEecC------CCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----EVND-ATAACDSSQIASGAS------DKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 93 (341)
+..++.++.|+.+..+|..+++.+.+...... .+.+ .... ++ .+++++. ++.|..+|.++|+.+.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45777888899999999999998877653220 2221 1111 44 4555544 789999999999988766
Q ss_pred cccCcc-------------------------------------E-EEEEEcCCCcEEEEecCC----------------C
Q psy17863 94 REHASK-------------------------------------V-TCVKFNEDSSVVISGSQD----------------N 119 (341)
Q Consensus 94 ~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d----------------~ 119 (341)
...... + ..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0 124566655566655432 2
Q ss_pred eEEEEEecCCCCc------------------CeEEeecCCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecC----
Q psy17863 120 TVMMWDVKSRSHH------------------PIQCCLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK---- 174 (341)
Q Consensus 120 ~i~iwd~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~---- 174 (341)
.|..+|.++++.. ++..-...++ ..++.++.+|.++++|..+++.+.........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5777777765421 1110000122 24667888999999999998877665432100
Q ss_pred -------ceE--------------------------EEEEECCCCceEEEeCCC-ceEEEEcccccCCCCe-----EEEE
Q psy17863 175 -------AVV--------------------------NSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQEPI-----VDAC 215 (341)
Q Consensus 175 -------~~~--------------------------~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i-----~~~~ 215 (341)
.++ ..++++|+...+++.... ...++..........+ ..+.
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 011 123445554444444321 1111111111000000 0011
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (341)
.+|.+. ....++.|..||+.+++.+.++.... .+... .+...+..++.++.||.++.+|.++++.+.++... .
T Consensus 433 ~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~--~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~ 505 (571)
T 2ad6_A 433 PGPNGP---TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGG--TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP-S 505 (571)
T ss_dssp ECTTST---TSCCCEEEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S
T ss_pred cCcccc---CCCCCCeEEEEECCCCCEEEEecCCC-Cccce--eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC-C
Confidence 111110 00246889999999999877765322 11111 12223567888999999999999999999988732 1
Q ss_pred ccceEEEEEcCCCcEEEEeC
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~ 315 (341)
...-.-+.+..+|+.++...
T Consensus 506 ~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcEeeeEEEEECCEEEEEEE
Confidence 11112233557777555443
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.15 E-value=1.8e-08 Score=87.75 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCEEEEEeC-CCeEEEEcC-CCcceeeEecCccc-ce----------eEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 25 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAH-EV----------NDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 25 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+..++.++. ++.|.-+|. .+++.+.++..... .+ ..++. ++..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666676 899999999 89998887753221 00 11233 35678888889999999999999887
Q ss_pred eecccC----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCC
Q psy17863 92 RWREHA----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRS 130 (341)
Q Consensus 92 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 130 (341)
...... ..+.+ .... ++ .++.++. ++.|..+|.++++
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 654321 01111 1111 34 4555544 7899999988876
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.14 E-value=3.6e-08 Score=75.24 Aligned_cols=192 Identities=9% Similarity=0.053 Sum_probs=119.5
Q ss_pred ceeeEecCcccc--eeEEEEecCCCEEEEecCCC--cEEEEECCCCceeeeecccCccE-EEEEEcCCCcEEEEecCCCe
Q psy17863 46 LLLKTYGGHAHE--VNDATAACDSSQIASGASDK--SVILWEVTTGQPVRRWREHASKV-TCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 46 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~ 120 (341)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+....... ..++.. ++.|+....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw--- 104 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTW--- 104 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES---
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEe---
Confidence 4455664 4433 4778888 676666666665 89999999999888775432211 123332 223332221
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
.++.+.++|..+.+.+..+.... .|
T Consensus 105 -----------------------------~~~~v~v~D~~t~~~~~ti~~~~------------eG-------------- 129 (262)
T 3nol_A 105 -----------------------------KNGLGFVWNIRNLRQVRSFNYDG------------EG-------------- 129 (262)
T ss_dssp -----------------------------SSSEEEEEETTTCCEEEEEECSS------------CC--------------
T ss_pred -----------------------------eCCEEEEEECccCcEEEEEECCC------------Cc--------------
Confidence 23455556665555555543321 10
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc--cc---eeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG---DFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
..++++++.|+.+..++.|.++|..+.+.+..+.... .+ +.-+ .+. +|+..+..-.++.
T Consensus 130 -------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL--e~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 130 -------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL--EWV-DGEIFANVWQTNK 193 (262)
T ss_dssp -------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTSSE
T ss_pred -------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee--EEE-CCEEEEEEccCCe
Confidence 1233566667777667889999999988887776432 22 2224 333 6765555557889
Q ss_pred EEEEeeeCCCceEEEEeeee----------ccceEEEEEcCCCcEEEEeC
Q psy17863 276 IYKWQLVDSSQISTLIHSVG----------KAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~ 315 (341)
|.+.|..+++.+..+...+- ....+.++|+|+++.|...+
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988873211 23569999999877666665
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.12 E-value=3.3e-07 Score=74.12 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=135.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC--------------------cccceeEEEEec-CCCEEEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG--------------------HAHEVNDATAAC-DSSQIAS 72 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~ 72 (341)
....++++.++|+++.++..++.|..|+..+++.. .+.. .......+++.+ +++ |++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 45678999999987888888999999998765432 2210 113578899997 555 555
Q ss_pred ecCCCcEEEEECCCCceeeeecc-----cCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 73 GASDKSVILWEVTTGQPVRRWRE-----HASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+...+.+..+|..+++. ..+.. .......+++.+ +|++.++-.... +... . .. ..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~--~--~~--------~~~~ 159 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDR--G--VQ--------QIMD 159 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTT--C--HH--------HHHH
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccc----cccc--c--cc--------eehc
Confidence 54445588888765532 22211 112356677777 665444432210 0000 0 00 0000
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 226 (341)
.+..++.+..+|..+++...... . . .....++++|+++.|+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~-~--~----------------------------------~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK-E--L----------------------------------HVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE-E--E----------------------------------SCCCEEEECTTSSEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc-C--C----------------------------------ccCcceEECCCCCEEEEE
Confidence 11223556666654433211110 0 0 112345667776654444
Q ss_pred -ecCCeEEEEeccccc--eeeeecCcccceeEEEEEeCCCCCEEEEecC----------CCcEEEEeeeCCCceEEEEee
Q psy17863 227 -STDECLRLFDKATGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHS 293 (341)
Q Consensus 227 -~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 293 (341)
..++.|.+|++.... ....+..... ...+ +++++|++.++... .+.|..+|. +++.+..+...
T Consensus 203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi--~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI--KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE--EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred eCCCCeEEEEECCCCcCCccceEEeCCC-CCCe--EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 445678888766321 1111111111 3334 78899986666544 467888885 57777666521
Q ss_pred ee--ccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 294 VG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 294 ~~--~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
.. ...++.+++ .+++++++.. .+.|..+++....+
T Consensus 279 ~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~ 316 (322)
T 2fp8_A 279 PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGN 316 (322)
T ss_dssp TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-----
T ss_pred CCCccccceEEEE-eCCEEEEeecCCCceEEEecccccC
Confidence 11 235667776 4666666665 88999999875543
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.11 E-value=4.3e-08 Score=74.83 Aligned_cols=181 Identities=9% Similarity=0.081 Sum_probs=115.6
Q ss_pred eeeeEEeeeCCc--EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEE
Q psy17863 4 TCVQTIDCKQGA--IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVI 80 (341)
Q Consensus 4 ~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~ 80 (341)
+.++++. |... ...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -..........++++.|. ..-.++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence 4555663 5533 4788887 4667778888899999999999988887 223333322333444444 445689999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCCceEEE
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKDSQIFC 147 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~ 147 (341)
+||.++.+.+.++..... -+.++ ++++.|+.+..++.|.++|.++.+.... ..+.... +.+.+
T Consensus 120 V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d-G~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN-GVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-TEEEE
T ss_pred EEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC-CEEEE
Confidence 999999999988875332 23444 4677777777789999999887652111 1112223 34544
Q ss_pred ee-ccCeEEEEEccCCcceeeeEeee-----------cCceEEEEEECCCCceEEEe
Q psy17863 148 GS-SDGKIYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 148 ~~-~~g~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 192 (341)
.. .++.|.+.|..+++.+..+.... .....+.++++|+++.|+++
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 44 57788899988888777765431 11244556666555444443
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.10 E-value=1.2e-07 Score=82.78 Aligned_cols=279 Identities=13% Similarity=0.145 Sum_probs=153.0
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccc----cee-EEEEecC---CC-EEEEec------CCCcEEEEECCCCce
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----EVN-DATAACD---SS-QIASGA------SDKSVILWEVTTGQP 89 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~l~~~~------~dg~i~iw~~~~~~~ 89 (341)
+..++.++.|+.|.-+|..+|+.+.+.+.... .+. ......+ ++ .+++++ .++.|..+|.++|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677888899999999999998877653321 111 1111212 22 566654 378999999999988
Q ss_pred eeeecccCccE-----------------------------------------EEEEEcCCCcEEEEecC-----------
Q psy17863 90 VRRWREHASKV-----------------------------------------TCVKFNEDSSVVISGSQ----------- 117 (341)
Q Consensus 90 ~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~~~~~----------- 117 (341)
+.........+ ..+++.|+..+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 76553211000 12456666666665542
Q ss_pred ---------C----CeEEEEEecCCCCc------------------CeEEeec-CCC---ceEEEeeccCeEEEEEccCC
Q psy17863 118 ---------D----NTVMMWDVKSRSHH------------------PIQCCLD-SKD---SQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 118 ---------d----~~i~iwd~~~~~~~------------------~~~~~~~-~~~---~~~~~~~~~g~i~~~d~~~~ 162 (341)
| +.|..+|.++++.. ++..-.. .++ ..++.++.+|.++++|..++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 57888887776521 1111110 122 36778899999999999999
Q ss_pred cceeeeEeeecCceEE-------------------------------------------EEEECCCCceEEEeCC-CceE
Q psy17863 163 SQISTLIHSVGKAVVN-------------------------------------------SLCSHPTRKHIMSACG-NNVK 198 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~-~~i~ 198 (341)
+.+............. .++++|+...+++... -.+.
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 8876654332100011 1223333222222211 1111
Q ss_pred EEEcccccCCC-Ce--EEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 199 LWTAEEDYGQE-PI--VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 199 ~~~~~~~~~~~-~i--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
++......... +. ..+...|.+ ...+|.|..||+.+++.+.+..... +...- .+...+.+++.|+.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~-----~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagglvf~g~~dg~ 508 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMY-----DDHVGSLRAMDPVSGKVVWEHKEHL-PLWAG--VLATAGNLVFTGTGDGY 508 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESC-----SSCSEEEEEECTTTCCEEEEEEESS-CCCSC--CEEETTTEEEEECTTSE
T ss_pred eecccccccCCCceeccceeecCCC-----CCCcceEEEEECCCCCEEEEecCCC-CCccc--ceEeCCCEEEEECCCCc
Confidence 11111000000 00 001111110 1246889999999999876665332 11111 11223668888999999
Q ss_pred EEEEeeeCCCceEEEEeeeecc-ceEEEEEcCCCcEEEE
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKA-VVNSLCSHPTRKHIMS 313 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~ 313 (341)
++.||.++|+.+.++.. ... ...-+.|..+|+..++
T Consensus 509 l~A~D~~tG~~lW~~~~--~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 509 FKAFDAKSGKELWKFQT--GSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEETTTCCEEEEEEC--SSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEecC--CCCcccCceEEEECCEEEEE
Confidence 99999999999999873 221 1122556678774433
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.10 E-value=8.4e-07 Score=69.59 Aligned_cols=213 Identities=8% Similarity=-0.040 Sum_probs=124.5
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+..++|+++++.|..+ ..++.|..++.........+.........+++++++..|+ +-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 456789999976555544 4578999999876554333333335678999999765555 44557889999986433222
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC---CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
...........++++|++..|+.+.. .+.|..+++..... ..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------------------------------~~~ 161 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------------------------------RIL 161 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------------------------------EEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------------------------------EEE
Confidence 22222245688999996555554443 24555555442210 000
Q ss_pred EeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
. .........++++|++..+..+. .+.|..++..... .......++.. ++..+++....+.|..+|..++
T Consensus 162 ~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 162 A-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp E-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred E-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 0 00123467788888766555444 3677777765432 11223455544 3444444445689999999988
Q ss_pred ceeeeecCccc-ceeEEEEEeCCCC
Q psy17863 241 ELLEEYKGHKS-GDFRIECCLDSKD 264 (341)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~ 264 (341)
+.+..+..... ....+ ++.|++
T Consensus 240 ~~~~~i~~g~~~~p~gi--~~~~~~ 262 (267)
T 1npe_A 240 KEMDTFHPHKQTRLYGI--TIALSQ 262 (267)
T ss_dssp EEEEEECCSSCCCCCCE--EEECSC
T ss_pred CceEEEcccccccccee--eecCcc
Confidence 88887754321 23344 455554
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.09 E-value=1.2e-07 Score=71.79 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=106.3
Q ss_pred CceeeeEEeeeCC--cEEEEEEccCCCEEEEEeCC--CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCC
Q psy17863 2 EYTCVQTIDCKQG--AIRAVRFNVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASD 76 (341)
Q Consensus 2 ~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d 76 (341)
.++.++++ .|.. -...+.|++ +.++.+.+.+ ..|+.+|+.+++.+.++.... ........+.++.| ...-.+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeC
Confidence 45677777 4764 466899987 5566666665 489999999999988876333 22222222334444 444568
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE-------------EeecCCCc
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ-------------CCLDSKDS 143 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~~~ 143 (341)
+.+.+||..+.+.+.+++..... ..++ ++++.|+.+..++.|.++|..+.+..... .+... ++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 99999999999999988754332 3444 45666777677899999998876521111 11112 33
Q ss_pred eEEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 144 QIFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 144 ~~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
.+.+.. .+..|.+.|..+++....+..
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 444444 577888888888887766653
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=9.9e-08 Score=72.87 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=117.4
Q ss_pred ceeeEecCcccc--eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccE--EEEEEcCCCcEEEEecCCCeE
Q psy17863 46 LLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV--TCVKFNEDSSVVISGSQDNTV 121 (341)
Q Consensus 46 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~i 121 (341)
+.+.++. |... ...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -.. .. ..+++. ++.|+...
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~lt----- 112 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLT----- 112 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEE-----
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEE-----
Confidence 4455554 4433 3678887 4666777788889999999999988776 222 22 223333 22222221
Q ss_pred EEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEE
Q psy17863 122 MMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 201 (341)
Q Consensus 122 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (341)
-.++.+.+||..+.+.+.++... +.+
T Consensus 113 ---------------------------w~~~~v~V~D~~Tl~~~~ti~~~------------~eG--------------- 138 (268)
T 3nok_A 113 ---------------------------WTEGLLFTWSGMPPQRERTTRYS------------GEG--------------- 138 (268)
T ss_dssp ---------------------------SSSCEEEEEETTTTEEEEEEECS------------SCC---------------
T ss_pred ---------------------------ccCCEEEEEECCcCcEEEEEeCC------------Cce---------------
Confidence 12345556666665555554321 111
Q ss_pred cccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc--cc---eeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG---DFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
..++++++.|+.+..++.|.++|..+.+.+..+.... .+ ..-+ .+. +|+..+....+..|
T Consensus 139 ------------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL--e~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 139 ------------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL--ECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp ------------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTCSEE
T ss_pred ------------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc--EEe-CCEEEEEECCCCeE
Confidence 1233556777777778899999999998887776432 12 2233 333 67655555568899
Q ss_pred EEEeeeCCCceEEEEeee-----------eccceEEEEEcCCCcEEEEeC
Q psy17863 277 YKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+.|..+++.+..+...+ .....+.++++|+++.|...+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999998887321 123679999999765554443
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.03 E-value=1.9e-07 Score=81.44 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=153.5
Q ss_pred CCEEEEecC-CCcEEEEEC-CCCceeeeecccCcc-----------EEEEEEcCCCcE----EEEecCCCeEEEEEecCC
Q psy17863 67 SSQIASGAS-DKSVILWEV-TTGQPVRRWREHASK-----------VTCVKFNEDSSV----VISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 67 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~ 129 (341)
+..|++++. ++.|..+|. .+|+.+.++...... ...+++.|.+.. ++.++.|+.+..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666676 889999999 899988776532210 123455433333 788888999999998877
Q ss_pred CCcCeEE------------eecCCCceEEEeec------cCeEEEEEccCCcceeeeEeeecCc----------------
Q psy17863 130 SHHPIQC------------CLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVGKA---------------- 175 (341)
Q Consensus 130 ~~~~~~~------------~~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~~---------------- 175 (341)
+..-... .....++.+++++. +|.|+.+|.++++.+..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 6311110 00112456777663 7999999999999887665332110
Q ss_pred --------------------eEEEEEECCCCceEEEeCCC-----------------ceEEEEccccc---------CC-
Q psy17863 176 --------------------VVNSLCSHPTRKHIMSACGN-----------------NVKLWTAEEDY---------GQ- 208 (341)
Q Consensus 176 --------------------~~~~~~~~~~~~~~~~~~~~-----------------~i~~~~~~~~~---------~~- 208 (341)
.-..+++.+....++.+..+ .+..+|.++.. +.
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00123444555555554432 45555554332 21
Q ss_pred -------CCeEEEEEc-cCC---CEEEEeecCCeEEEEeccccceeeeecCcc-------------ccee----------
Q psy17863 209 -------EPIVDACFT-RDC---QCILTCSTDECLRLFDKATGELLEEYKGHK-------------SGDF---------- 254 (341)
Q Consensus 209 -------~~i~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~---------- 254 (341)
.++. +... .+| +.++.++.+|.++++|.++|+.+....... .++.
T Consensus 302 wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 380 (599)
T 1w6s_A 302 WDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH 380 (599)
T ss_dssp SCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred ccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence 1121 2222 567 567778999999999999998876554211 0000
Q ss_pred ---E-----------EEEEeCCCCCEEEEe---------------------------------c------CCCcEEEEee
Q psy17863 255 ---R-----------IECCLDSKDSQIFCG---------------------------------S------SDGKIYKWQL 281 (341)
Q Consensus 255 ---~-----------~~~~~~~~~~~l~~~---------------------------------~------~dg~i~iwd~ 281 (341)
. -..+++|+.+++++. + .+|.|.-||+
T Consensus 381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~ 460 (599)
T 1w6s_A 381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA 460 (599)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence 0 012455555544332 1 4578999999
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
.+++.+.+... ..+...-.....+.+++.++ |+.++.||.+++...
T Consensus 461 ~tG~~~W~~~~---~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 461 ITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCEEeEecC---CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 99998887762 12222111223456666788 999999998876543
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.03 E-value=6.6e-07 Score=78.11 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=64.2
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccce---------eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV---------NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
..++.++.++.|.-+|..+|+.+.++....... ..++. .+..++.++.|+.|..+|..+|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 345555554459999999999988876432210 11222 3557888888999999999999988766432
Q ss_pred Cc----cEE-EEEEcC---CCc-EEEEec------CCCeEEEEEecCCC
Q psy17863 97 AS----KVT-CVKFNE---DSS-VVISGS------QDNTVMMWDVKSRS 130 (341)
Q Consensus 97 ~~----~v~-~~~~~~---~~~-~l~~~~------~d~~i~iwd~~~~~ 130 (341)
.. .+. ...... +++ .++.++ .++.|..+|.++++
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 21 111 011111 222 555554 37889999988776
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.00 E-value=4.6e-06 Score=66.80 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=76.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILW 82 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw 82 (341)
.+..+... .....++|+++|+++++-..++.|..||... +....+. .......+++.++++++++..... .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34444322 5678999999999777766789999999765 3333333 335688999999998666554322 46667
Q ss_pred ECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 83 EVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..+++....... .......++..+++..+++-..++.|..+|...
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 7777765332221 122234555555555555555678888887654
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.00 E-value=4.6e-07 Score=68.59 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=116.8
Q ss_pred ceeeEecCccc--ceeEEEEecCCCEEEEecCC--CcEEEEECCCCceeeeecccCccE-EEEEEcCCCcEEEEecCCCe
Q psy17863 46 LLLKTYGGHAH--EVNDATAACDSSQIASGASD--KSVILWEVTTGQPVRRWREHASKV-TCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~ 120 (341)
+.+.++. |.. -...+.|++ +.++.+.+.+ ..|+.+|+++++.+.......... ..+++. ++.|+...
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~lt---- 81 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLT---- 81 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE----
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEE----
Confidence 4555664 543 356888885 5555665654 489999999999988775332211 122322 22222221
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
-.++.+.++|..+.+.+.++..... |
T Consensus 82 ----------------------------w~~~~v~v~D~~tl~~~~ti~~~~~------------G-------------- 107 (243)
T 3mbr_X 82 ----------------------------WRNHEGFVYDLATLTPRARFRYPGE------------G-------------- 107 (243)
T ss_dssp ----------------------------SSSSEEEEEETTTTEEEEEEECSSC------------C--------------
T ss_pred ----------------------------eeCCEEEEEECCcCcEEEEEeCCCC------------c--------------
Confidence 1234566666666655555543210 0
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc-----ceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS-----GDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
..+.+++..|+.+..++.|.++|..+.+.+..+..... .+.-+. +. +|+..+..-.+..
T Consensus 108 -------------wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe--~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 108 -------------WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE--WV-NGELLANVWLTSR 171 (243)
T ss_dssp -------------CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EE-TTEEEEEETTTTE
T ss_pred -------------eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE--Ee-CCEEEEEECCCCe
Confidence 12334566666666788999999999888877764321 222332 22 5665555556789
Q ss_pred EEEEeeeCCCceEEEEeee-----------eccceEEEEEcCCCcEEEEeC
Q psy17863 276 IYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 315 (341)
|.+.|..+++.+..+...+ .....+.++++|+++.|...+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999998887321 124679999999876655554
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.90 E-value=8.4e-06 Score=65.28 Aligned_cols=228 Identities=8% Similarity=0.027 Sum_probs=123.2
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC--eEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVM 122 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~ 122 (341)
.+.+..+... .....++|+++++++++-..++.|..||... +....+. .......+++.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555432 4567899999998777776789999999764 3333333 345688999999998665543322 355
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 201 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 201 (341)
.++..+++...+.. .+.. .....++..+++..+++.. .+.+..++
T Consensus 99 ~~d~~~g~~~~~~~---~~~~-------------------------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 99 SLVKSDGTVETLLT---LPDA-------------------------------IFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEECTTSCEEEEEE---CTTC-------------------------------SCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCeEEEEEe---CCCc-------------------------------cccCcccccCCCcEEEEECCCCeEEEEe
Confidence 55554443111100 0000 0011122222222222221 23333333
Q ss_pred cccc--------------c---CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccc-cce--eeeecCcccceeEEEEEe
Q psy17863 202 AEED--------------Y---GQEPIVDACFTRDCQCILTC-STDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCL 260 (341)
Q Consensus 202 ~~~~--------------~---~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~ 260 (341)
.... . .......+ +|+++.|+++ ...+.|..|++.. ++. ...+... .....+ ++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi--~v 219 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDF--AF 219 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSE--EE
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCe--EE
Confidence 3210 0 11123344 7888766544 4567899999864 321 1111111 112234 78
Q ss_pred CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc---CCCcEEEEeC
Q psy17863 261 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH---PTRKHIMSAC 315 (341)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~ 315 (341)
+++|++.++....+.|.+++. .++..............++++|. |+++.|..++
T Consensus 220 d~dG~l~va~~~~~~V~~~~~-~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEECC-CCCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 899988777777889999995 46543221111223568999998 8877666655
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.85 E-value=2.1e-06 Score=77.59 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=68.4
Q ss_pred cEEEEEEc-cCCCEEEEEeC-C----CeEEEEcCCCc-ceeeEecCcccceeEEEEecCCCEEEEecCC-----CcEEEE
Q psy17863 15 AIRAVRFN-VDGSYCLTCGS-D----KKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASD-----KSVILW 82 (341)
Q Consensus 15 ~v~~~~~~-~~~~~l~t~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 82 (341)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .-......++|+||++.|+....+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 99998885543 2 35999999988 63221 011224578999999888876654 358888
Q ss_pred ECCCCcee--eeec-ccCccEEEEEEcCCCcEEEEec
Q psy17863 83 EVTTGQPV--RRWR-EHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 83 ~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
++.+++.. ..+. ........+.|+||+++|+...
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 88776432 2222 2234466789999999888765
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.76 E-value=0.00014 Score=68.40 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=165.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEecC------CCEEEEecC-CCcEEEEECC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAACD------SSQIASGAS-DKSVILWEVT 85 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iw~~~ 85 (341)
.|...+.+ +++++.+. .+.+.++.+.+++.. ... .-...|.|+++.|. ++++++|.. |++++|+++.
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 34444433 23555554 577878776654322 222 23567999999763 368999986 9999999998
Q ss_pred CCceeeeecc-cCccEEEEEEc--CCCcEEEEecCCCeEEEEEecC--CCC----------cCeEE--eecCCCceEEEe
Q psy17863 86 TGQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKS--RSH----------HPIQC--CLDSKDSQIFCG 148 (341)
Q Consensus 86 ~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~--~~~----------~~~~~--~~~~~~~~~~~~ 148 (341)
+.+.+....- ......++.+. ....+|..|-.||.+..+.+.. +.. .++.. +.......+++.
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 7665543221 11233344333 2456788999999987766543 211 11111 111222233333
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceE-EEEEECCC--CceEEEeCCCceEEEEccccc--------CCCCeEEEEEc
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVV-NSLCSHPT--RKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFT 217 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~ 217 (341)
+ +....++..+. + +. +. ......+ ....|+.. ..-++...++.+++..++... -...+..++++
T Consensus 671 s-~rp~liy~~~~-~-l~-~s-~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~ 745 (1158)
T 3ei3_A 671 S-DRPTVIYSSNH-K-LV-FS-NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQ 745 (1158)
T ss_dssp S-SSCEEEEESSS-S-EE-EE-EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEE
T ss_pred C-CCCEEEEEcCC-c-eE-Ee-ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEc
Confidence 3 33333333222 1 11 11 1111112 22223322 344556666778887764322 34567788888
Q ss_pred cCCCEEEEeecC-------------------------------------------------CeEEEEeccccceeeeecC
Q psy17863 218 RDCQCILTCSTD-------------------------------------------------ECLRLFDKATGELLEEYKG 248 (341)
Q Consensus 218 ~~~~~l~~~~~d-------------------------------------------------~~i~i~d~~~~~~~~~~~~ 248 (341)
|+.+.++++..+ +.|++.|..+.+.+..++-
T Consensus 746 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l 825 (1158)
T 3ei3_A 746 EVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF 825 (1158)
T ss_dssp GGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC
Confidence 877765543311 2366777666666554432
Q ss_pred cc-cceeEEEE-EeCCC-CCEEEEec----------CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 249 HK-SGDFRIEC-CLDSK-DSQIFCGS----------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 249 ~~-~~~~~~~~-~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.. ..+.++.. .+..+ ..+++.|+ ..|.|++|++.++ .+..+.....+++|++++-- +|+ |+++-
T Consensus 826 ~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~~-~g~-Lla~i 902 (1158)
T 3ei3_A 826 LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVEF-NGK-LLASI 902 (1158)
T ss_dssp CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEEESSCEEEEEEE-TTE-EEEEE
T ss_pred CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEEcCCcCEEEeee-CCE-EEEEc
Confidence 22 22333332 23322 46788775 3588999999854 33333333557889998744 354 44444
Q ss_pred CCcEEEEEccccc
Q psy17863 316 GNNVKLWTAEEDY 328 (341)
Q Consensus 316 d~~i~vw~~~~~~ 328 (341)
..+|++|++..+.
T Consensus 903 g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 903 NSTVRLYEWTTEK 915 (1158)
T ss_dssp TTEEEEEEECTTS
T ss_pred CCEEEEEECCCCc
Confidence 7899999998654
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.76 E-value=2.4e-05 Score=60.15 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=84.6
Q ss_pred EEeeeCCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445557899999999866554 56778899999987 887777642 22567788888888877776667889999876
Q ss_pred CCcee---eeec------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 86 TGQPV---RRWR------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 86 ~~~~~---~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
....+ .... ..+.....++|+|.++.|+++.......+|.+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 54421 2221 234557899999998888887776666676665
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=3.1e-05 Score=65.06 Aligned_cols=110 Identities=6% Similarity=0.098 Sum_probs=65.4
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CC----cEEEEECCCCc
Q psy17863 15 AIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DK----SVILWEVTTGQ 88 (341)
Q Consensus 15 ~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~ 88 (341)
....|+++| ++..|..+...+.|+.+|+.++....... .......++|++++++|+++.. ++ .+...+ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 457899998 45556665555889999987765443333 4556789999999996666554 22 233333 3332
Q ss_pred ee--eeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 89 PV--RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 89 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
.. ..+.. ......++++| ++.++++-..++.|..++..
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 22 22221 22345677787 56555555555666666654
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.74 E-value=5.3e-05 Score=61.76 Aligned_cols=238 Identities=6% Similarity=-0.067 Sum_probs=134.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCceee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 91 (341)
.+..+|.+..+++ +|+.+. ...|+..++........+. .......++|++.+..|+.+ ...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445666666643 444433 4568888876655443343 33457899999866555544 567889999987665433
Q ss_pred eecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 92 RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
.+.........+++.+. +.+.++-...+.|.+.++...... .+ .
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~----------------------------------~l-~ 154 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK----------------------------------VL-L 154 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------------------------------EE-E
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE----------------------------------EE-E
Confidence 33322334567888864 444455555567777666532210 00 0
Q ss_pred eecCceEEEEEECCCCceEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccc
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC-STDECLRLFDKAT 239 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~ 239 (341)
.........++++|.+..+..+.. +.|..++++... .......++++|++..|+.+ ...+.|..+|+..
T Consensus 155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 011223567777775555544432 345555554322 22346789999866655544 4567899999764
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
......+.........+ ++ .++...++-...+.|..++..+++....+.
T Consensus 235 ~~~~~~~~~~~~~P~gi--av-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 235 SHRKAVISQGLPHPFAI--TV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSCEEEECSSCSSEEEE--EE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEEeCCCCCceEE--EE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 33222222222233445 44 345566666677888888866777666655
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.72 E-value=5.5e-05 Score=61.12 Aligned_cols=265 Identities=9% Similarity=0.034 Sum_probs=141.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec----CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
...+.++.|.+++..+++ +.+|.|... ...++.-.... .....+..+.+.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 457999999888877775 557765333 23333222221 1244688999986 44444 455564433 333343
Q ss_pred eeeeec---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 89 PVRRWR---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 89 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.-.... .+...+..+.+.+++..++.+. +|.| |....+ ++.-
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~Dg--------------------------------G~tW 154 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDS--------------------------------GKNW 154 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESST--------------------------------TSSE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCC--------------------------------CCCC
Confidence 322221 2334566777666665555443 3432 111110 0000
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEE-c-------ccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT-A-------EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.... ......+..+.+.+++.+++.+..+.+..-. - ........+..+.+.++++.+ +.+.+|.+++.+.
T Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~ 232 (327)
T 2xbg_A 155 QALV-QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDP 232 (327)
T ss_dssp EEEE-CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEET
T ss_pred EEee-cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecC
Confidence 0110 0112246677888888888777665544322 1 111234578889999998755 4456788777643
Q ss_pred cccceeeeecC----cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEE
Q psy17863 238 ATGELLEEYKG----HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 238 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 312 (341)
..++.-..+.. ....+..+ ++.+++..++++ .+|.+ .+....++....+... .....+.++.|.+++..++
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v--~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDL--AYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEE--EESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred CCCCeeEeccCCcccCCcceEEE--EecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 33443333221 11234444 677777666655 46766 3444556555544311 1235678898987777666
Q ss_pred EeCCCcEEEEE
Q psy17863 313 SACGNNVKLWT 323 (341)
Q Consensus 313 ~~~d~~i~vw~ 323 (341)
++.+|.|.-++
T Consensus 309 ~G~~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQKGILLRYV 319 (327)
T ss_dssp ECSTTEEEEEC
T ss_pred EcCCceEEEEc
Confidence 66688766554
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.70 E-value=7.7e-05 Score=61.76 Aligned_cols=235 Identities=6% Similarity=-0.064 Sum_probs=132.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeec
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
-+|.+..++ .+|+.+. ...|+..++.......... .......++|.+.+..|+ +-...+.|..+++..+.....+.
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 345555553 3444443 4578888887665444444 344578999998655555 44567889999987665433333
Q ss_pred ccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 95 EHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 95 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
........+++.+. +.+.++-...+.|.+.++....... + ....
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~----------------------------------l-~~~~ 200 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV----------------------------------L-LWQS 200 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE----------------------------------E-ECSS
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE----------------------------------e-ecCC
Confidence 22234466788764 4444444455666666654322100 0 0011
Q ss_pred CceEEEEEECCCCceEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEEEE-eecCCeEEEEeccccce
Q psy17863 174 KAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILT-CSTDECLRLFDKATGEL 242 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~ 242 (341)
......++++|.+..+..+.. +.|..++++... .......++++|++..|+. -...+.|..+|+.....
T Consensus 201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence 123566777766555444432 345555544321 1234678999986655554 44567899999764332
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
...+.........+ ++ ..+..+++-...+.|..++..+++....+.
T Consensus 281 ~~~~~~~~~~P~gi--av-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 281 KAVISQGLPHPFAI--TV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEECSSCSSEEEE--EE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCCceEE--EE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22222222233444 45 345566666778889888877787777766
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.62 E-value=5.9e-06 Score=74.72 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=41.2
Q ss_pred ceeEEEEe-cCCCEEEEecC-C----CcEEEEECCCC-ceeee-ecccCccEEEEEEcCCCcEEEEecCC
Q psy17863 57 EVNDATAA-CDSSQIASGAS-D----KSVILWEVTTG-QPVRR-WREHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 57 ~v~~~~~~-~~~~~l~~~~~-d----g~i~iw~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
.+...+|+ |||++|+.+.. + ..|+++|+.++ +.+.. +. .....++|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence 67889999 99998875432 2 35999999988 63221 11 123467899999888776654
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.61 E-value=8.4e-05 Score=57.10 Aligned_cols=200 Identities=13% Similarity=0.227 Sum_probs=124.4
Q ss_pred EecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 50 TYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
.+.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555666899999999876555 46778889999987 887777642 22567889999988877776667788888876
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc--
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE-- 204 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-- 204 (341)
.... +.. +....+. +...........++++|.++.+.++.+ ....+|.+..
T Consensus 100 ~~~~--i~~-----------------~~~~~~~-------~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~ 153 (255)
T 3qqz_A 100 PNSE--VKI-----------------LKKIKIP-------LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL 153 (255)
T ss_dssp TTCC--EEE-----------------EEEEECC-------CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred CCCe--eee-----------------eeeeccc-------cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc
Confidence 5431 000 0000000 000112334678999998866666554 3344554431
Q ss_pred ---------------ccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcc---------cceeEEEEE
Q psy17863 205 ---------------DYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHK---------SGDFRIECC 259 (341)
Q Consensus 205 ---------------~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~ 259 (341)
......+..++++|. +++++....++.+..+|.. ++.+..+.-.. .....+ +
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGi--a 230 (255)
T 3qqz_A 154 SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGV--A 230 (255)
T ss_dssp CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEE--E
T ss_pred cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCee--E
Confidence 112335678999995 5566667777889999966 55544443221 123445 8
Q ss_pred eCCCCCEEEEecCCCcEEEEe
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd 280 (341)
++++|++.++ ++.+.++.+.
T Consensus 231 ~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 231 MDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp ECTTCCEEEE-ETTTEEEEEE
T ss_pred ECCCCCEEEE-cCCceEEEEE
Confidence 9999975554 6666666665
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.59 E-value=0.00015 Score=60.93 Aligned_cols=183 Identities=9% Similarity=0.088 Sum_probs=107.2
Q ss_pred ceeEEEEecC--CCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC---C-eEEEEEecCCC
Q psy17863 57 EVNDATAACD--SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD---N-TVMMWDVKSRS 130 (341)
Q Consensus 57 ~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~ 130 (341)
....++|+|+ +..|+.+...+.|+.++..+++...... .......++++++++++++-... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3568899984 4455555444889999987776554433 44567899999999944443311 1 23333322221
Q ss_pred C---------cCeEEeecCCCceEE-EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceE
Q psy17863 131 H---------HPIQCCLDSKDSQIF-CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVK 198 (341)
Q Consensus 131 ~---------~~~~~~~~~~~~~~~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 198 (341)
. .+......+.++.++ +-..++.|+.++..++.....+...........++++|+++.+..+. .+.|.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 1 112223333244454 44456789999887665423332222222335799999998555544 36777
Q ss_pred EEEcccccC--------------------------CCCeEEEEE---------ccCCCEEEEeecCCeEEEEeccccc
Q psy17863 199 LWTAEEDYG--------------------------QEPIVDACF---------TRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 199 ~~~~~~~~~--------------------------~~~i~~~~~---------~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
.++...... -.....+++ .++|.++++-...+.|+.++. ++.
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 777542110 112456888 777887777777788999985 453
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=8.4e-05 Score=59.90 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=69.4
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecC-----cccceeEEEEec-CCCEEEEecC------------
Q psy17863 15 AIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAAC-DSSQIASGAS------------ 75 (341)
Q Consensus 15 ~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------ 75 (341)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 578899998 665 45444455588899775542 22211 112467899999 8877666432
Q ss_pred -----CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecC
Q psy17863 76 -----DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKS 128 (341)
Q Consensus 76 -----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 128 (341)
++.|..+|..+++....... ......++++++++.|+.+ ...+.|..+++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 36688888766654322221 1234568899988865554 4557788887764
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.55 E-value=0.00018 Score=59.51 Aligned_cols=199 Identities=7% Similarity=-0.041 Sum_probs=113.5
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCE-EEEecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
.....++|.+.+..|. +-...+.|..+++........+.........+++.+.+.. +++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4567899997555444 4455788999998765544434333345577889875544 4555567788888876544333
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC-C-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ-D-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.+.........+++.|.+..|+.+.. . +.|..+++..... ..+.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 241 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------RIIA 241 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------------------EEEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----------------------------------EEEE
Confidence 33333355688999986555554432 2 4555555433210 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.........++++|++..|..+.. +.|..+++.... .......+++ .++..+++-...+.|..++..++
T Consensus 242 -~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 242 -DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp -CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 011223567777776655555442 556666654322 1223455666 34455556666777888886667
Q ss_pred ceeeeecC
Q psy17863 241 ELLEEYKG 248 (341)
Q Consensus 241 ~~~~~~~~ 248 (341)
+.+..+..
T Consensus 320 ~~~~~i~~ 327 (386)
T 3v65_B 320 KNQEIIRN 327 (386)
T ss_dssp CSCEEEEC
T ss_pred cceEEEcc
Confidence 66665543
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.00028 Score=57.50 Aligned_cols=198 Identities=7% Similarity=-0.044 Sum_probs=113.7
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+..++|++....|. +-...+.|..+++........+.........+++.+.+. +.++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3467899997655555 444578899999876554443433334567889987554 44555667889999986544333
Q ss_pred eecccCccEEEEEEcCCCcEEEEec-CC-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGS-QD-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.+...-.....+++.|.+..|+... .. +.|...++..... ..+.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 198 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------RIIA 198 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------------------EESC
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----------------------------------EEEE
Confidence 3333334568899998555554443 33 4555555443210 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.......+.++++|++..+..+.. +.|..+++.... .......+++ .++..+++-...+.|..++..++
T Consensus 199 -~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 199 -DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 011234677888876665555442 556666665422 1223455666 34455555556677777776666
Q ss_pred ceeeeec
Q psy17863 241 ELLEEYK 247 (341)
Q Consensus 241 ~~~~~~~ 247 (341)
+.+..+.
T Consensus 277 ~~~~~i~ 283 (349)
T 3v64_C 277 KNQEIIR 283 (349)
T ss_dssp CSCEEEE
T ss_pred CccEEec
Confidence 6555554
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.45 E-value=9e-06 Score=72.42 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEcCCCcceeeEecCccc-ceeEEEEecCCCEEEEec-CC-----CcEEEEECCCCc
Q psy17863 17 RAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQIASGA-SD-----KSVILWEVTTGQ 88 (341)
Q Consensus 17 ~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----g~i~iw~~~~~~ 88 (341)
.++++.+++++++.|+. +..+.+||..+.+....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+++
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 35677889999999984 56899999877653322221222 223455667899999988 34 569999998765
Q ss_pred e
Q psy17863 89 P 89 (341)
Q Consensus 89 ~ 89 (341)
.
T Consensus 326 W 326 (656)
T 1k3i_A 326 W 326 (656)
T ss_dssp E
T ss_pred c
Confidence 4
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.43 E-value=0.00049 Score=57.19 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=128.7
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCC----ceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTG----QPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~----~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..++.......... ....+..++|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444444 5689999987665444443 45678899999866655554 45688988988652 22222332344567
Q ss_pred EEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
.+++.+ .+++.++-...+.|.+.+++..... .+. .........+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~----------------------------------~l~-~~~~~~P~~i 207 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK----------------------------------TLF-RENGSKPRAI 207 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEE----------------------------------EEE-ECSSCCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceE----------------------------------EEE-eCCCCCcceE
Confidence 888887 4444455455666666665533210 000 0112235667
Q ss_pred EECCCCceEEEeC-C--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEee-cCCeEEEEeccccceeeeecCc
Q psy17863 181 CSHPTRKHIMSAC-G--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 181 ~~~~~~~~~~~~~-~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
+++|.+..+..+. + +.|...+++... .-.....+++++++..|+.+. ..+.|..+|+............
T Consensus 208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 7777554444433 1 445555554322 124567899998776666554 4678999998643322222221
Q ss_pred --ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 250 --KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 250 --~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
......+ ++. .+.++++-...+.|..++..+++.+..+.
T Consensus 288 ~~l~~P~gl--~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 KRLAHPFSL--AVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp STTSSEEEE--EEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCCCEEE--EEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1222334 443 34456666677889999988887777765
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.42 E-value=0.00041 Score=55.67 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=122.9
Q ss_pred EEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCcee-eeecccCccEEEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPV-RRWREHASKVTCV 103 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~ 103 (341)
+|+.+. ...|+..++.... ....+-........++|.+.+..| ++-...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 4678999887653 122222223456789999865554 45456788999998765322 1222222345678
Q ss_pred EEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE
Q psy17863 104 KFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 182 (341)
Q Consensus 104 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 182 (341)
++.+ ++.+.++-...+.|.++++.......+ . .........+++
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l---~--------------------------------~~~~~~P~giav 129 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL---F--------------------------------WQELDQPRAIAL 129 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEE---E--------------------------------CSSCSSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEE---E--------------------------------eCCCCCccEEEE
Confidence 8876 444555555566777777654321100 0 001122455556
Q ss_pred CCCCceEEEeC---CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeee-cCcc
Q psy17863 183 HPTRKHIMSAC---GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEY-KGHK 250 (341)
Q Consensus 183 ~~~~~~~~~~~---~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~-~~~~ 250 (341)
.|.+..+..+. .+.|...+++... .-.....++++|++..|+.+ +..+.|..+|+.. .....+ .+..
T Consensus 130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~ 208 (318)
T 3sov_A 130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSL 208 (318)
T ss_dssp EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCC
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCC
Confidence 55444333332 1344444443211 12345789999866655544 4567899999863 332322 2222
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.....+ ++.. +..+++-...+.|..++..+++....+.
T Consensus 209 ~~P~gl--av~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 209 PHPFAL--TLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp SCEEEE--EEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCceEE--EEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 233444 4443 4456666677889999987887766665
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.41 E-value=0.00054 Score=56.92 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=118.0
Q ss_pred eCCcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCc----ceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVT 85 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 85 (341)
....+..++|++.+..|..+ ...+.|+.+++... .....+.........+++.+. +++.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567899999865555544 45678888887652 223333334456778999874 4455555667889999987
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
.......+.........+++.|.+..|+.... .+.|...++.....
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-------------------------------- 237 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------------------------- 237 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--------------------------------
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--------------------------------
Confidence 55443334334445788999986555554432 24455555443210
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
..+. .........+++++++..|..+.. +.|..++++... .......+++. .+.++++-...+.|
T Consensus 238 --~~~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 238 --YSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp --EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred --EEEE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 0000 011234677888876666655542 556666655422 11233455552 33445555566778
Q ss_pred EEEeccccceeeeecCcccceeEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRI 256 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~ 256 (341)
..+|..+++.+..+.........+
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceE
Confidence 888877777766665433333344
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.39 E-value=0.00048 Score=55.27 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=65.9
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEecCCCE-EEEecCCCcEEEEECCCC
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTG 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~ 87 (341)
.....++|+++++.|. +-...+.|..+++.. ......+.........+++.+.+.. .++-...+.|.+.+++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4567899998665554 445568999999875 2222223323345678899875544 455566788999998654
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEe
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDV 126 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~ 126 (341)
.....+.........+++.|.+..|+.+... +.|...++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 3332333233456888888855555544332 34444443
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.37 E-value=0.0011 Score=58.47 Aligned_cols=308 Identities=9% Similarity=-0.023 Sum_probs=169.3
Q ss_pred CcEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC--CCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~ 90 (341)
.....+++.+.++.| ++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 467789999865544 45455789999998654332333334455778999997666655543 456777776533332
Q ss_pred eeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecCCCCc---------CeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHH---------PIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
......-.....+++++++..|+.+ ...+.|...|+...... +..... ..+...++-...+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~-~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-FEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE-SSSEEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE-eCCEEEEecCCCCEEEEEECC
Confidence 2222234457899999865555554 45677888887653221 111111 223344444456677777776
Q ss_pred CCcceeeeEee-----------e-----c--C-----ceEEEE-----------EECCC---------------CceEEE
Q psy17863 161 DSSQISTLIHS-----------V-----G--K-----AVVNSL-----------CSHPT---------------RKHIMS 191 (341)
Q Consensus 161 ~~~~~~~~~~~-----------~-----~--~-----~~~~~~-----------~~~~~---------------~~~~~~ 191 (341)
+++....+... . . . .....+ +..|. ..+|+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 55433221100 0 0 0 000001 11121 124555
Q ss_pred eCCCceEEEEcccccC---------CCCeEEEEEccCCCEEE-EeecCCeEEEEeccccceeeeecCcccceeEEEEEeC
Q psy17863 192 ACGNNVKLWTAEEDYG---------QEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~~---------~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (341)
+..+.|+..++..... -.....+++.+.+..|+ +-...+.|+.+++........+...-.....+ +++
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl--AvD 400 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI--AVD 400 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEE
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce--EEe
Confidence 5556666666654431 23467888988554444 44457789989886543322332222334455 666
Q ss_pred CC-CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC---CCcEEEEEccc
Q psy17863 262 SK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEE 326 (341)
Q Consensus 262 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~vw~~~~ 326 (341)
.. +++.++-...+.|.+.++.. +....+.. ..-....++++.|....|..+. ...|...+++.
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G-~~~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG 467 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNG-TMRKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG 467 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-CSCEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cccCcEEEEeCCCCcEEEEeCCC-CeEEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC
Confidence 54 44555556678899998754 44444431 2345678999999744444433 24555555543
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.34 E-value=0.0009 Score=56.20 Aligned_cols=222 Identities=7% Similarity=0.012 Sum_probs=122.6
Q ss_pred cEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---Cc-EEEEECCCCc
Q psy17863 15 AIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KS-VILWEVTTGQ 88 (341)
Q Consensus 15 ~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~-i~iw~~~~~~ 88 (341)
....++|+|+ ...|..+...+.|+.+++.+++..... ........++++++++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 344555544488999998777654433 344568899999999944443321 11 3333322211
Q ss_pred e-eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC-----------cCeEEeecCCCceE-EEeeccCeE
Q psy17863 89 P-VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH-----------HPIQCCLDSKDSQI-FCGSSDGKI 154 (341)
Q Consensus 89 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~g~i 154 (341)
. ...+. .......++++| ++.+.++-..++.|..++..++.. ........+.++.+ ++-...+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 01111 223346688899 676666666678888888774432 11123344445534 444456788
Q ss_pred EEEEccC--Ccc--eeeeEeee-------------cCceEEEEEE---------CCCCceEEEeCC-CceEEEEccccc-
Q psy17863 155 YKWQLVD--SSQ--ISTLIHSV-------------GKAVVNSLCS---------HPTRKHIMSACG-NNVKLWTAEEDY- 206 (341)
Q Consensus 155 ~~~d~~~--~~~--~~~~~~~~-------------~~~~~~~~~~---------~~~~~~~~~~~~-~~i~~~~~~~~~- 206 (341)
..++... ... ...+.... .-.....+++ .+++.+.++-.. +.|+.++.....
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT 377 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEE
Confidence 8877653 211 11111110 1123667888 677776666554 567777643210
Q ss_pred ----------------------CCCCeEEEEEc-cCCCEEEEeecCCeEEEEecc
Q psy17863 207 ----------------------GQEPIVDACFT-RDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 207 ----------------------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.-.....++++ ++|.++++-..++.|+.++++
T Consensus 378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 01124567777 556555555556666666543
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.33 E-value=0.00065 Score=54.39 Aligned_cols=201 Identities=9% Similarity=0.212 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC----CC---EEEEe-cC--CCcEEEEECC--CCceee
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD----SS---QIASG-AS--DKSVILWEVT--TGQPVR 91 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~-~~--dg~i~iw~~~--~~~~~~ 91 (341)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++. -. +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666677888999999 8888888864 56777776663 22 22333 33 5789999773 333 43
Q ss_pred eecc------cC-ccEEEEEE--cCC-Cc-EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 92 RWRE------HA-SKVTCVKF--NED-SS-VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 92 ~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
.+.. .. ..+..+++ +|. +. +++....+|.+..|++.... +|.+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~--------------------~g~~------ 168 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK--------------------NGYI------ 168 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT--------------------TSCE------
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC--------------------CCcc------
Confidence 3311 11 34555666 553 32 56667777777777764321 0000
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc--
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA-- 238 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-- 238 (341)
+.+.++.+.. ...+..+...+....|+.+-++.-|..|+.+
T Consensus 169 ~~~lVR~f~l-------------------------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~ 211 (355)
T 3amr_A 169 SGKKVRAFKM-------------------------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD 211 (355)
T ss_dssp EEEEEEEEEC-------------------------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTT
T ss_pred cceEEEEecC-------------------------------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcC
Confidence 0111111111 2235566677777778888887667777744
Q ss_pred ---ccceeeeec-C-cccceeEEEEEeCCCCC-EEEEec-CCCcEEEEeee-CCCceEEEE
Q psy17863 239 ---TGELLEEYK-G-HKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLV-DSSQISTLI 291 (341)
Q Consensus 239 ---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~ 291 (341)
+++.+..+. + -...+..+.+...++++ +|++.+ .+.+..+||.. +.+.+..+.
T Consensus 212 ~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 212 GGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp SCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 234444432 2 22346666444466655 555554 67799999986 566677775
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.0011 Score=56.13 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=66.4
Q ss_pred cEEEEEEccC-C-CEEEEEeCCCeEEEEcCCCcceeeEecCc---ccceeEEEE-------ecCCCEEEEecCCC-c---
Q psy17863 15 AIRAVRFNVD-G-SYCLTCGSDKKIKLWNPYRNLLLKTYGGH---AHEVNDATA-------ACDSSQIASGASDK-S--- 78 (341)
Q Consensus 15 ~v~~~~~~~~-~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-~--- 78 (341)
....|+|+|. . +++++-...+.|++.|+.++......... ......++| ++++++|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999983 4 44444444467999998876655444322 235789999 99999666665543 2
Q ss_pred ---EEEEECCC-Ccee-----eeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 79 ---VILWEVTT-GQPV-----RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 79 ---i~iw~~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
|.+.+... ++.. ..+... .....++++| ++.++++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 55665333 2221 122211 1234567777 44555555566777777776
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.30 E-value=0.00043 Score=55.38 Aligned_cols=101 Identities=10% Similarity=0.206 Sum_probs=65.5
Q ss_pred EEEEeecCCeEEEEecc-------ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-----CCCceEE
Q psy17863 222 CILTCSTDECLRLFDKA-------TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-----DSSQIST 289 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~ 289 (341)
++++...+|.+..|++. +.+.+++|..... +..+ ..++....|+.+-++..|..++.+ +++.+..
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq-~Egc--vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~ 221 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ-TEGM--AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR 221 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC-EEEE--EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC-cceE--EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE
Confidence 56777778888888873 3466777765443 3333 678888899999988666555543 2233433
Q ss_pred EEeeeeccceEEEEE--cCCCc-EEEEeC--CCcEEEEEcc
Q psy17863 290 LIHSVGKAVVNSLCS--HPTRK-HIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~--~~~~~-~l~~~~--d~~i~vw~~~ 325 (341)
+....-...+..|++ .++++ +|++++ +++..+|+.+
T Consensus 222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 321122246788887 45555 666666 8899999986
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.28 E-value=0.0022 Score=58.00 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=68.7
Q ss_pred eCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECC
Q psy17863 12 KQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVT 85 (341)
Q Consensus 12 h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~ 85 (341)
....+..|+|.+... ++++-...+.|+.+++... .....+.........|++.+.++.| ++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899988544 4445455678888887642 2233333344567789998876544 455567889999987
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEec
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVK 127 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~ 127 (341)
.......+.........|++.|.+..|+.+... +.|...++.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 544333333334457889998865555554321 445444443
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.21 E-value=0.0025 Score=56.15 Aligned_cols=308 Identities=9% Similarity=0.005 Sum_probs=164.0
Q ss_pred CcEEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 90 (341)
.....|++.|.+.+|..... .+.|...++............-...+.+++++++..|..+ ...+.|...+++.....
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence 44668888886555544432 4567666664333322233334457889999876666655 45678988888654332
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCe--------------------------E
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPI--------------------------Q 135 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~--------------------------~ 135 (341)
............+++.++ ...++-...+.|...|..+++. .+. .
T Consensus 207 ~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~l 285 (619)
T 3s94_A 207 AVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 285 (619)
T ss_dssp ---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSE
T ss_pred EEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccce
Confidence 222211122245666654 3444444556677776544321 000 0
Q ss_pred EeecCC------------------------CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 136 CCLDSK------------------------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 136 ~~~~~~------------------------~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
|+..+. ...++.-+..+.|+..++.................+..+++.+.+..+..
T Consensus 286 Cl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~ 365 (619)
T 3s94_A 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365 (619)
T ss_dssp EEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEE
T ss_pred EECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEE
Confidence 110000 01122222344555556554432211111112334678899986655555
Q ss_pred eC--CCceEEEEccccc-------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEEEe
Q psy17863 192 AC--GNNVKLWTAEEDY-------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCL 260 (341)
Q Consensus 192 ~~--~~~i~~~~~~~~~-------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 260 (341)
+. .+.|..++..... .......+++.+. +++.++-+..+.|.+.++... ....+. ..-.....+ ++
T Consensus 366 sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~i--av 442 (619)
T 3s94_A 366 TDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAI--VL 442 (619)
T ss_dssp EETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEE--EE
T ss_pred EeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeE--EE
Confidence 43 4677777766432 1235668888874 455555556788999988643 333332 222233444 78
Q ss_pred CCCCCEEEEec--CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccc
Q psy17863 261 DSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 261 ~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+|...+|+... ..+.|...++ +|.....+.. ..-...+.+++++++..|..+. .+.|...+++..
T Consensus 443 dp~~G~ly~tD~g~~~~I~r~~~-dG~~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 443 DPMVGYMYWTDWGEIPKIERAAL-DGSDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp ETTTTEEEEEECSSSCEEEEEET-TSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EcCCCcEEEecCCCCCEEEEEcc-CCCccEEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 88644555443 2356666665 3444444431 2345678999998777666665 677888887654
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.21 E-value=0.0013 Score=52.98 Aligned_cols=218 Identities=9% Similarity=0.007 Sum_probs=118.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec---CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
...+.++.|.+ +..++ ++.++.|..-. ..++.-.... .+...+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLHTT-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEEES-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEEEC-CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44444 45567554432 2333322222 233457788887777666655 4554422 2233433
Q ss_pred eee-ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC--------CCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 90 VRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS--------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 90 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
-.. .......+..+.+.+++.+++.+...+..+-.|-.. .....+..+...+++.++..+.+|.++..+..
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD 233 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCC
Confidence 222 233456788999999888777765443333333211 11122333333445566677778887766422
Q ss_pred CCcceeeeEee--ecCceEEEEEECCCCceEEEeCCCceEEEEccccc----------CCCCeEEEEEccCCCEEEEeec
Q psy17863 161 DSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY----------GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 161 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
.++.-..+... .....+..+.+.+++..++++.++.+.. ..+... ....+..+.|.+++. +++++.
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 22222222111 1123478888888888888877776632 222111 235678888876665 555567
Q ss_pred CCeEEEEec
Q psy17863 229 DECLRLFDK 237 (341)
Q Consensus 229 d~~i~i~d~ 237 (341)
+|.|..++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 887776653
No 291
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.16 E-value=0.0017 Score=52.07 Aligned_cols=226 Identities=12% Similarity=-0.018 Sum_probs=116.7
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCC----CceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTT----GQPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..|+.+.+....+. .......++|++++..|+ +-..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344444 3568888988766555444 345678899998665555 445568899999875 222222222223346
Q ss_pred EEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
.+++.+. +++.++-...+.|.+.++.... ...+.. ......
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~----------------------------------~~~~~~-~~~~~P--- 122 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------------------------------RKTLFR-ENGSKP--- 122 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS----------------------------------EEEEEE-CTTCCE---
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCc----------------------------------eEEEEE-CCCCCc---
Confidence 6777753 3333444445566665544211 000000 011123
Q ss_pred EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-C-CeEEEEeccccceeeeec-CcccceeEEE
Q psy17863 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-D-ECLRLFDKATGELLEEYK-GHKSGDFRIE 257 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 257 (341)
..++++|.+..|+.... . +.|..+++. ++....+. ..-.....+
T Consensus 123 -------------------------------~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gl- 169 (316)
T 1ijq_A 123 -------------------------------RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGI- 169 (316)
T ss_dssp -------------------------------EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEE-
T ss_pred -------------------------------ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEE-
Confidence 34445543333333222 2 466666654 33322221 111223344
Q ss_pred EEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 258 CCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 258 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++++++..|+.+ ...+.|..+|+. +.....+... ........+++. .+.++++-. .+.|..++..++.
T Consensus 170 -a~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 -TLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp -EEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred -EEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 788876666554 456789999975 4444444311 112345677775 355555555 7888888865443
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.15 E-value=0.0016 Score=51.30 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=142.4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc-
Q psy17863 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH- 96 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~- 96 (341)
.-.+|..+.+|.-. ..++.++|+++.+.++.+.- ...|.-=.|-.+. .|+-.+. ..|.-|+++. ..+.+.+..|
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecch
Confidence 34578788777655 67899999999998888874 3456555665443 4444433 5699999975 3555555544
Q ss_pred ---CccEEEEEEcCCCcEEEEecC-------CCeEEEEEecCCCCcCeE-------Eee---cCCCceEEE-eec---cC
Q psy17863 97 ---ASKVTCVKFNEDSSVVISGSQ-------DNTVMMWDVKSRSHHPIQ-------CCL---DSKDSQIFC-GSS---DG 152 (341)
Q Consensus 97 ---~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~-------~~~---~~~~~~~~~-~~~---~g 152 (341)
...|..-..+++.++++..+- .|.+.+|..+.+....+. ... ......+++ +.. .+
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 227 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 227 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 356777788888887765442 367778887765422211 000 011112222 221 25
Q ss_pred eEEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 153 KIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
++++.++... .....+. .....+-+.|+. ..+-..++..++....++.-+.-|.
T Consensus 228 kLhIiEi~~~~~~~~~f~-----kk~vdi~fppea--------------------~~DFPVamqvs~kygviyviTK~G~ 282 (365)
T 2xzh_A 228 KLHIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYGY 282 (365)
T ss_dssp EEEEEECSSCCTTCCCCC-----CEEEEECCCTTC--------------------TTCCEEEEEEETTTTEEEEEETTSE
T ss_pred EEEEEEcCCCCCCCCCcc-----cccceeeCCccc--------------------cCCceEEEEecccCCEEEEEeCCcE
Confidence 6666666432 1111110 112222333321 2344567788888888999999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+++||++++.++..-+-....+... +.+....=++.-...|.|.--.+++...
T Consensus 283 ihlyDleTgt~i~~nrIS~d~iF~t--a~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 283 IHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEE--EEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEEEcccCcEEEEeccCCCceEEe--cccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 9999999999988777666666554 4443333455555777776666655443
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.14 E-value=0.002 Score=52.45 Aligned_cols=101 Identities=9% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEec---CcccceeEEEEecC---CCEEEEecC-C-----Cc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYG---GHAHEVNDATAACD---SSQIASGAS-D-----KS 78 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 78 (341)
-..-..++|.|+|+++++ ..+|.|.+++ +++ .+..+. ........++++|+ +..|.++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985555 5679999998 333 222221 12356789999998 555554433 2 56
Q ss_pred EEEEECCCCc-----e-eeeec---ccCccEEEEEEcCCCcEEEEec
Q psy17863 79 VILWEVTTGQ-----P-VRRWR---EHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 79 i~iw~~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
|..++...++ . +..+. ........++|.|+|.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7788876432 1 11122 1111235789999997666544
No 294
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.10 E-value=0.0053 Score=55.75 Aligned_cols=301 Identities=8% Similarity=0.054 Sum_probs=168.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|.++...+++..|..|.. +-+..+|..+++...........|.++...+++.+.+ |+.+| +.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEEEc
Confidence 4888888777775555554 4588888776543222111234688888777776544 44444 8888876654322111
Q ss_pred -------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------------CCcCeEEeecCCCceEEEeeccCeE
Q psy17863 95 -------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------------SHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 95 -------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
-....|.++....++. |..|+..| +.++..... ....+..+....++.+..|+.+| +
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l 345 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-L 345 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-E
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-c
Confidence 1234588888887776 44455556 443322110 11234445555566777777554 6
Q ss_pred EEEEccCCcc--eeeeEe-----eecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------------CCCCeEEE
Q psy17863 155 YKWQLVDSSQ--ISTLIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------GQEPIVDA 214 (341)
Q Consensus 155 ~~~d~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~i~~~ 214 (341)
..++..+++. ...+.. ......|.++...+++.+.+.+ .+.+..++..+.. ....|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 424 (758)
T 3ott_A 346 IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI 424 (758)
T ss_dssp EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEE
T ss_pred eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE
Confidence 6666554221 111110 1123458889888888877766 5578888765421 12346777
Q ss_pred EEccCCCEEEEeecCCeEEEEecccc-----cee---eeec---C-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDKATG-----ELL---EEYK---G-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~---~~~~---~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
...++|+ |..|+..+-|.++|..+. ... ..+. + ....+..+ ..+++|++-+.++..+-+..+|..
T Consensus 425 ~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i--~~d~~g~lWi~~~t~~Gl~~~d~~ 501 (758)
T 3ott_A 425 FEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI--IPDNEGNVWVLLYNNKGIDKINPR 501 (758)
T ss_dssp EECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE--EECTTSCEEEEETTCSSEEEEETT
T ss_pred EEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE--EEcCCCCEEEEccCCCCcEEEeCC
Confidence 7777776 555666556888886531 111 1111 1 11235555 677888766533334558888876
Q ss_pred CCCceEEEEee--eeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 283 DSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 283 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
+++.. .+... .....+.++....+|.+.+.... -+..++..++
T Consensus 502 ~~~~~-~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 546 (758)
T 3ott_A 502 TREVT-KLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDE 546 (758)
T ss_dssp TTEEE-EECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--C
T ss_pred CCceE-EecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCC
Confidence 55432 22210 11346788888888887766544 4777776544
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0031 Score=52.95 Aligned_cols=119 Identities=8% Similarity=0.089 Sum_probs=74.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCC-C----eEEEEcCCCccee--eEecCcccceeEEEEec-CCCEEEEecCCCcE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSD-K----KIKLWNPYRNLLL--KTYGGHAHEVNDATAAC-DSSQIASGASDKSV 79 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~d-g----~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 79 (341)
.+.........++|+++|++|+.+... + .+...+ ..+... ..+. .......++++| ++.++++-..++.|
T Consensus 173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 333344567899999999966665541 1 233344 233222 2222 123456788999 67766666677899
Q ss_pred EEEECCCCceeeeecc-cCccEEEEEEcCCCcEE-EEecCCCeEEEEEecC
Q psy17863 80 ILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKS 128 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 128 (341)
..++...+........ .......++|+|++++| ++-...+.|..++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999876654222221 12346789999999954 4555678899988764
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.10 E-value=0.0021 Score=50.98 Aligned_cols=118 Identities=9% Similarity=0.112 Sum_probs=76.8
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCCcceeeE-ecC----c--ccceeEEEE---ecCCCEEEEec--
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYRNLLLKT-YGG----H--AHEVNDATA---ACDSSQIASGA-- 74 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~-- 74 (341)
.++...---.+++|.+....|..++ ..++|..|+...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3444444556889988655666555 689999999875543332 222 1 124688999 68877776543
Q ss_pred -----------CCCcEEEEECC---CCceeeeec--c-----------cCccEEEEEEcCCCcEEEEecCC-CeEEEEE
Q psy17863 75 -----------SDKSVILWEVT---TGQPVRRWR--E-----------HASKVTCVKFNEDSSVVISGSQD-NTVMMWD 125 (341)
Q Consensus 75 -----------~dg~i~iw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd 125 (341)
.+..|..+|+. +++.+.... . -......++..++|+..++++.. +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 25779999998 777665432 1 11347889999999888887766 5544443
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.10 E-value=3.4e-05 Score=68.98 Aligned_cols=218 Identities=9% Similarity=-0.003 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEECCC----CceeeeecccCccEEEEEEcC-
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTT----GQPVRRWREHASKVTCVKFNE- 107 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~- 107 (341)
.+.|+..++.+.+....+. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888877655444333 234567889998776666654 467899999875 222222221112334567764
Q ss_pred CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc
Q psy17863 108 DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 108 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
.++++++-...+.|.++++...... .+. .........++++|.+.
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~---~l~--------------------------------~~~~~~P~giavDp~~g 508 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRK---TLF--------------------------------REQGSKPRAIVVDPVHG 508 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEE---EEC--------------------------------CCSSCCCCCEECCSSSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceE---EEE--------------------------------eCCCCCcceEEEccCCC
Confidence 3444444344566666665533210 000 00111234556666544
Q ss_pred eEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEE-EEeecCCeEEEEeccccceeeeecC---cccce
Q psy17863 188 HIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYKG---HKSGD 253 (341)
Q Consensus 188 ~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~ 253 (341)
.|+.+.. +.|..+++.... .......++++|++..| ++-...+.|..+++... ....+.. .....
T Consensus 509 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P 587 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP 587 (699)
T ss_dssp CCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSC
T ss_pred cEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCc
Confidence 4444331 344444443221 12334578999875544 44455678999998643 2222221 11112
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
..+ ++..+ .++++....+.|..++..+++.+..+.
T Consensus 588 ~gl--avd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 588 FSL--AVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CCC--EEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred eEe--EEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 223 44443 455666677889999877777666554
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.04 E-value=0.0094 Score=56.41 Aligned_cols=303 Identities=9% Similarity=0.052 Sum_probs=153.1
Q ss_pred CCcEEEEEEccC------CCEEEEEeC-CCeEEEEcCCCcceeeEecC-cccceeEEEEe--cCCCEEEEecCCCcEEEE
Q psy17863 13 QGAIRAVRFNVD------GSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDATAA--CDSSQIASGASDKSVILW 82 (341)
Q Consensus 13 ~~~v~~~~~~~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 82 (341)
...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 468999999863 368999996 99999999987665543321 11233333332 234578899999988666
Q ss_pred ECC--CCceeee--ecccCccEEEEEEcCCCc-EEEEecCC--------CeEEEEEecCCCCcCeEEeec--CCCceEEE
Q psy17863 83 EVT--TGQPVRR--WREHASKVTCVKFNEDSS-VVISGSQD--------NTVMMWDVKSRSHHPIQCCLD--SKDSQIFC 147 (341)
Q Consensus 83 ~~~--~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 147 (341)
.++ +|+.... ..-...++.-..+...+. .+++.+.. +.+.+-.+.-........+.. .++ -++.
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~-g~v~ 711 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD-SLAL 711 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTT-EEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCC-cEEE
Confidence 553 4433211 111123443333332222 22222221 222222222211111111111 122 3333
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---------------------------------
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--------------------------------- 194 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 194 (341)
..++.+++..+.+.........+ -...+..++++|..+.++....
T Consensus 712 -~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1158)
T 3ei3_A 712 -ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLF 789 (1158)
T ss_dssp -ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC
T ss_pred -EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccc
Confidence 33455888887655433322222 2345677777776665443321
Q ss_pred -----------------CceEEEEccccc--------CCCCeEEEE---EccC-CCEEEEee----------cCCeEEEE
Q psy17863 195 -----------------NNVKLWTAEEDY--------GQEPIVDAC---FTRD-CQCILTCS----------TDECLRLF 235 (341)
Q Consensus 195 -----------------~~i~~~~~~~~~--------~~~~i~~~~---~~~~-~~~l~~~~----------~d~~i~i~ 235 (341)
..+++.|..+.. ....+.+++ |..+ ..++++|+ ..|.|.+|
T Consensus 790 ~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf 869 (1158)
T 3ei3_A 790 SSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVF 869 (1158)
T ss_dssp ----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEE
T ss_pred cccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEE
Confidence 123444433211 222334443 3322 46788776 35789999
Q ss_pred eccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE
Q psy17863 236 DKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 236 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
++..++. +.+.. ..++++++. .+ +|+++++. ..++++|++...+.+. ... .+-..|..+.....+.+++.
T Consensus 870 ~v~~~kL~lv~~~~-v~g~v~al~-~~--~g~Lla~i--g~~l~vy~l~~~~~L~-~~~-~~~~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 870 QYSDGKLQTVAEKE-VKGAVYSMV-EF--NGKLLASI--NSTVRLYEWTTEKELR-TEC-NHYNNIMALYLKTKGDFILV 941 (1158)
T ss_dssp EEETTEEEEEEEEE-ESSCEEEEE-EE--TTEEEEEE--TTEEEEEEECTTSCEE-EEE-EECCCSCEEEEEEETTEEEE
T ss_pred EEECCEEEEEEEEE-cCCcCEEEe-ee--CCEEEEEc--CCEEEEEECCCCceEE-EEe-eccccEEEEEEeccCCEEEE
Confidence 9874432 22222 345566653 23 35444433 4689999998766544 221 12222333333335678888
Q ss_pred eC-CCcEEEEEccc
Q psy17863 314 AC-GNNVKLWTAEE 326 (341)
Q Consensus 314 ~~-d~~i~vw~~~~ 326 (341)
|. -..|.+...+.
T Consensus 942 gD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 942 GDLMRSVLLLAYKP 955 (1158)
T ss_dssp EESSBCEEEEEEET
T ss_pred EEhhheEEEEEEEc
Confidence 88 66677665443
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.04 E-value=0.003 Score=50.62 Aligned_cols=197 Identities=10% Similarity=-0.023 Sum_probs=111.8
Q ss_pred cEEEEEEccCCC-EEEEEeCCCeEEEEcCCCccee-eEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCCceee
Q psy17863 15 AIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 15 ~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
....++|.+.+. ++.+-...+.|..+++...... ..+...-.....+++.+.+ +++++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 466888988544 4445555788999987765322 2222223456778998744 445555567889999986543322
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
...........+++.|.+..|+.+.. .+.|...++..... ..+.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 161 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----------------------------------FIII 161 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----------------------------------EEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----------------------------------EEEE
Confidence 23233455688999886555555442 34555555432110 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
...-...+.++++|++..+..+.. +.|..++++... .......+++.. +..+++-...+.|..++..++
T Consensus 162 -~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 -NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 011233677888876665555442 566666665322 123344566643 344555556678888888777
Q ss_pred ceeeeec
Q psy17863 241 ELLEEYK 247 (341)
Q Consensus 241 ~~~~~~~ 247 (341)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 7655554
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.96 E-value=9.3e-05 Score=66.19 Aligned_cols=199 Identities=9% Similarity=-0.021 Sum_probs=105.8
Q ss_pred CcEEEEEEccCCCEEEEEe-CCCeEEEEcCCC----cceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~ 87 (341)
..+..++|.+.+..|..+. ..+.|+.+++.. ......+.........+++.+.+ +++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456788988666665543 457888888764 22222222222335567887544 44455456788999998654
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.....+.........+++.|.+..|+.+... +.|..+++.......
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-------------------------------- 533 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-------------------------------- 533 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--------------------------------
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--------------------------------
Confidence 4333333223345677888865555544321 445544443221000
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
+. .......+.++++|++..|+.+.. +.|..+++.... .......+++..+ .++++....+.|..
T Consensus 534 --l~-~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 --LV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp --ES-CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred --EE-eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 00 001123456777776555444432 456666654321 0112234444443 44555566788999
Q ss_pred EeccccceeeeecC
Q psy17863 235 FDKATGELLEEYKG 248 (341)
Q Consensus 235 ~d~~~~~~~~~~~~ 248 (341)
++..+++.+..+..
T Consensus 610 ~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 610 ANRLTGSDVNLLAE 623 (699)
T ss_dssp EETTTEEEEECCCT
T ss_pred EEccCCCceEEeec
Confidence 99888887776653
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.95 E-value=0.0043 Score=49.23 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=36.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-----CcEEEEECCCCc
Q psy17863 24 DGSYCLTCG-SD-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-----KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~ 88 (341)
++.+++.|+ .+ ..+.+||+.+.+-... +...... .++ ...++..++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VAS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEE-EEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccE-EEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 456677777 33 3688999877653221 2111111 122 22366777777754 468899988766
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.89 E-value=0.0025 Score=50.63 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCEEEEecCC-----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC-----cEEEEEcccc
Q psy17863 263 KDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN-----NVKLWTAEED 327 (341)
Q Consensus 263 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~vw~~~~~ 327 (341)
++++++.|+.+ ..+.+||+.+.+-. .+........-.+++ .-++++++.|+ ++ .+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 56777777764 36888988765432 222101111111122 23677888877 53 4788888754
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.89 E-value=0.0048 Score=49.13 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=35.1
Q ss_pred CCEEEEEeC--CCeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC----CcEEEEECCCCce
Q psy17863 25 GSYCLTCGS--DKKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTTGQP 89 (341)
Q Consensus 25 ~~~l~t~~~--dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~ 89 (341)
+.+++.|+. ...+.+||..+.+-... +......-..+ .-++..++.|+.+ ..+.+||..+++-
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 335556664 35788999877653221 21111111222 2366677777754 5688888877653
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0028 Score=50.33 Aligned_cols=97 Identities=7% Similarity=0.062 Sum_probs=65.1
Q ss_pred CCeEEEEecc---ccceeeeec--Cccc---------ceeEEEEEeCCCCCEEEEecCC-CcEEEEeeeCCCceEEEEee
Q psy17863 229 DECLRLFDKA---TGELLEEYK--GHKS---------GDFRIECCLDSKDSQIFCGSSD-GKIYKWQLVDSSQISTLIHS 293 (341)
Q Consensus 229 d~~i~i~d~~---~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~ 293 (341)
+..|..||+. +++.+.... .... .-....++.+++|+..++++.. +.|...+. +++.+..+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-dG~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-DGKTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT-TSCCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC-CCCEEeeeeec
Confidence 5678888888 676654433 1111 1124455899999999988887 88777774 34444333210
Q ss_pred ----eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 294 ----VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 294 ----~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
......+.++++|+|..|++.. ++.+..+|+..
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1122367999999999999998 99999999773
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.83 E-value=0.0084 Score=48.83 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=34.8
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceE---EEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQIS---TLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+|.++++....+.|...++.....+. .+.. .....+..+++.|||.++++..
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 467777777777888888877532222 2210 1235789999999998777664
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.80 E-value=0.01 Score=48.82 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=142.0
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH 96 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~ 96 (341)
+.-.+|..+.+|.=. ..++.|+|+++.+.++.+.-.. .|.-=.|-.+. .|+..+ +..|+-|+++. ..+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 344577777777654 6799999999999888887444 55555665443 444443 35699999974 3455555544
Q ss_pred ----CccEEEEEEcCCCcEEEEecC-------CCeEEEEEecCCCCcCeEE-------eecC---CCceEEE-eec---c
Q psy17863 97 ----ASKVTCVKFNEDSSVVISGSQ-------DNTVMMWDVKSRSHHPIQC-------CLDS---KDSQIFC-GSS---D 151 (341)
Q Consensus 97 ----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~-------~~~~---~~~~~~~-~~~---~ 151 (341)
...|..-..+++.++++..+- .|.+.+|..+.+....+.. .... ....+++ +.. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777788888888775442 3677788877654322110 0000 0111222 111 2
Q ss_pred CeEEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 152 GKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+++++.++... .....+. .....+-+.|+. ..+-..++..++....++.-+.-|
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fppe~--------------------~~DFPvamqvs~kygviyviTK~G 280 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYG 280 (494)
T ss_dssp CEEEEEECSCCCTTCCCCC-----CEEEECCCCTTS--------------------TTCCEEEEEEETTTTEEEEEETTS
T ss_pred cEEEEEEcCCCccCCCCcc-----ceeeeeeCCccc--------------------ccCceeEEEecccCCEEEEEecCc
Confidence 45665555332 0000010 001222222221 234456778888888899999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
.+++||++++.++..-+-....+... +......=++.....|.|.--.+.+...
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t--~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEE--EEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred eEEEEecccceeeeeecccCCceEEe--cccCCCCcEEEEccCceEEEEEEccccc
Confidence 99999999999988777666666554 4444444555556777777766655543
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.78 E-value=0.017 Score=50.98 Aligned_cols=306 Identities=10% Similarity=0.028 Sum_probs=167.5
Q ss_pred CcEEEEEEccCCCEEEEEe--CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYCLTCG--SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 90 (341)
.....|++.|...+|.... ..+.|...++..... ..+-..-.....++++++++.|..+ ...+.|...++.....
T Consensus 123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~- 200 (628)
T 4a0p_A 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR- 200 (628)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence 4567899998554555443 256787777654433 3332344567899999977766655 4567899999865433
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc---------C------------------------e-EE
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH---------P------------------------I-QC 136 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~------------------------~-~~ 136 (341)
..+.........+++.. +..+++-...+.|...|..+++.. + . .|
T Consensus 201 ~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C 279 (628)
T 4a0p_A 201 EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLC 279 (628)
T ss_dssp EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEE
T ss_pred EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhh
Confidence 33333333455777765 444455445677777775443210 0 0 01
Q ss_pred eecCCCce----------------------EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-
Q psy17863 137 CLDSKDSQ----------------------IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 193 (341)
Q Consensus 137 ~~~~~~~~----------------------~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 193 (341)
...+.+.+ ++.-+....|+-..+.................+..+.+.+.+..+..+.
T Consensus 280 ~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~ 359 (628)
T 4a0p_A 280 LAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS 359 (628)
T ss_dssp EEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET
T ss_pred hcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEec
Confidence 11110110 1111112233333332211111111111224477889988776666554
Q ss_pred -CCceEEEEccccc-------------CCCCeEEEEEccCCCEE-EEeecCCeEEEEeccccceeeeec-CcccceeEEE
Q psy17863 194 -GNNVKLWTAEEDY-------------GQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIE 257 (341)
Q Consensus 194 -~~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 257 (341)
.+.|..++..... .......+++.+.++.| ++-+..+.|.+.++. |+....+. ........+
T Consensus 360 ~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~i- 437 (628)
T 4a0p_A 360 RQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAV- 437 (628)
T ss_dssp TTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEE-
T ss_pred CcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeE-
Confidence 3566666654322 12356789999876544 566667889999986 55444432 222334455
Q ss_pred EEeCC-CCCEEEEecCCC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccc
Q psy17863 258 CCLDS-KDSQIFCGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 258 ~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+++| .|.++++-.... .|...++ +|.....+.. ..-...+.+++++++..|..+. .+.|...+++..
T Consensus 438 -avdp~~g~ly~tD~g~~~~~I~r~~~-dG~~~~~l~~-~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 438 -VVNPEKGYMYFTNLQERSPKIERAAL-DGTEREVLFF-SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp -EEETTTTEEEEEEEETTEEEEEEEET-TSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -EEecCCCeEEEeecCCCCCeEEEEeC-CCCCcEEEEe-ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 7888 454444432222 5666554 3544444442 2334578999999877776665 678888888654
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.76 E-value=0.0072 Score=47.92 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCCEEEEeecC-----CeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCC-----CcEEEEeeeCCCc
Q psy17863 219 DCQCILTCSTD-----ECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQ 286 (341)
Q Consensus 219 ~~~~l~~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 286 (341)
++++++.|+.+ ..+.+||+.+.+- +..+....... .+ + ..++++++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~--~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GV--A-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE--E-EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eE--E-EECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 67777777654 3588899876543 22222111111 11 1 1256677777764 4688999876543
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC-C-----CcEEEEEcccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED 327 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~~ 327 (341)
...-...........+. -++++++.|+ + ..+.+||+++.
T Consensus 235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 22211101111122222 3677888877 5 35778887654
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.74 E-value=0.0097 Score=47.00 Aligned_cols=255 Identities=14% Similarity=0.156 Sum_probs=147.7
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
+.+|.|-|+.++....+-.- ..-+.-.+|..+.+|.-. ..++.++|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 121 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEE
Confidence 34788888877655433221 122344688888777665 57899999999888877764 4567777776544 344
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|++.... .| ++++|.... .....|.....+++.++++..+
T Consensus 122 lVT-~taVyHWs~~~~s-~P--------------------~kvFdR~~~---------L~~~QIInY~~d~~~kW~~l~G 170 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGES-QP--------------------VKMFDRHSS---------LAGCQIINYRTDAKQKWLLLTG 170 (365)
T ss_dssp EEE-SSEEEEEESSTTC-CC--------------------EEEEECCGG---------GTTCEEEEEEECTTSCEEEEEE
T ss_pred EEc-CCcEEEEcccCCC-CC--------------------ceeeecchh---------cccceEEEEEECCCCCEEEEEe
Confidence 443 3578889886522 12 233332111 1234566667777777665543
Q ss_pred --------CCceEEEEccccc---CCCCeEEE-EEccCC-----CEEEEeec---CCeEEEEecccc---ce------ee
Q psy17863 194 --------GNNVKLWTAEEDY---GQEPIVDA-CFTRDC-----QCILTCST---DECLRLFDKATG---EL------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~---~~~~i~~~-~~~~~~-----~~l~~~~~---d~~i~i~d~~~~---~~------~~ 244 (341)
.|.+.+|..+... .++..-+. .+-.+| ..++.+.. .+.+++.++... .+ +.
T Consensus 171 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vd 250 (365)
T 2xzh_A 171 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 250 (365)
T ss_dssp EEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEE
T ss_pred EeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccce
Confidence 2568888877654 11111111 111111 22332222 257888887432 11 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
. +......-..+.+..++.-..++.-+.-|.|++||++++.++..-+ -...+|-..+-+....-++... .|.|.--
T Consensus 251 i~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr--IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 251 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp ECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred eeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec--cCCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 1 1111122344555677777889999999999999999999998877 4556665555544433344444 7776666
Q ss_pred Ecccc
Q psy17863 323 TAEED 327 (341)
Q Consensus 323 ~~~~~ 327 (341)
.+++.
T Consensus 329 ~v~~~ 333 (365)
T 2xzh_A 329 CVEEE 333 (365)
T ss_dssp EECTT
T ss_pred EECcc
Confidence 55543
No 310
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.03 Score=50.80 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=54.2
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCC----ceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTG----QPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..++.......... ....+..++|.+....|+ +-...+.|+.+++... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444433 4568888876655444333 445678899998555544 5455678888888642 22222222334455
Q ss_pred EEEEcCCCcEE-EEecCCCeEEEEEec
Q psy17863 102 CVKFNEDSSVV-ISGSQDNTVMMWDVK 127 (341)
Q Consensus 102 ~~~~~~~~~~l-~~~~~d~~i~iwd~~ 127 (341)
.|++.+.+..| ++-...+.|.+.++.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 67777655333 343444555555544
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.66 E-value=0.011 Score=47.01 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred cCCCEEEEEeCC----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecC----C-----CcEEEEECCCC
Q psy17863 23 VDGSYCLTCGSD----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGAS----D-----KSVILWEVTTG 87 (341)
Q Consensus 23 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~ 87 (341)
-++.+++.|+.+ ..+.+||+.+.+-... +...... .+++. .++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356777777742 3688999876653221 1111111 12222 26667777765 2 45888888776
Q ss_pred c
Q psy17863 88 Q 88 (341)
Q Consensus 88 ~ 88 (341)
+
T Consensus 101 ~ 101 (308)
T 1zgk_A 101 Q 101 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.62 E-value=0.012 Score=48.30 Aligned_cols=101 Identities=13% Similarity=0.240 Sum_probs=71.6
Q ss_pred eEEEEEECCCCceEEEeCCCceEEEEccccc-------------------------CCCCeEEEEEccC---CCEEEEee
Q psy17863 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------------------GQEPIVDACFTRD---CQCILTCS 227 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------~~~~i~~~~~~~~---~~~l~~~~ 227 (341)
.+..+..+|+|.+++..+...+.+..+.... ...+|..+.|+|- +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 4677999999999999988888887766211 2467999999994 56899999
Q ss_pred cCCeEEEEeccccc--eeeeecC---------cccceeEEEEEeCCCCCEEEE--ecCCCcEEEE
Q psy17863 228 TDECLRLFDKATGE--LLEEYKG---------HKSGDFRIECCLDSKDSQIFC--GSSDGKIYKW 279 (341)
Q Consensus 228 ~d~~i~i~d~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iw 279 (341)
.|+.|++||+.... +. .+.. ....+.. ++|.+++-.|+. .+..|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S--~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD--LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE--EEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE--EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999987521 22 2221 1133444 488887776666 4478888754
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.61 E-value=0.02 Score=47.06 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=74.6
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCcceeeEecCc----ccceeEEEEecCCCEEEEecCCCcEEEEECCCCce--------
Q psy17863 22 NVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH----AHEVNDATAACDSSQIASGASDKSVILWEVTTGQP-------- 89 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------- 89 (341)
..+|..++.+- ++.||.-++......+.++.. -..|..+..+|+|++||..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34566566544 577888777654445555432 236888999999999998765 5699988873321
Q ss_pred ----eeeecc------cCccEEEEEEcC---CCcEEEEecCCCeEEEEEecCCCCcC
Q psy17863 90 ----VRRWRE------HASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 90 ----~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~ 133 (341)
.+.++- ...+|..+.|+| .+..|++-..|+.|++||+......+
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 112221 246799999999 45678888889999999988744333
No 314
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.0052 Score=52.06 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=85.2
Q ss_pred EEEEEECCC-CceEEEeCC--CceEEEEccccc----------CCCCeEEEEE-------ccCCCEEEEeecCC------
Q psy17863 177 VNSLCSHPT-RKHIMSACG--NNVKLWTAEEDY----------GQEPIVDACF-------TRDCQCILTCSTDE------ 230 (341)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~----------~~~~i~~~~~-------~~~~~~l~~~~~d~------ 230 (341)
...++++|. +..|.++.. +.|++.|+.... .......++| +++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 567777773 443433332 456666655532 1234788999 99999666665543
Q ss_pred -eEEEEeccc-ccee-----eeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeee-------CCCc---------
Q psy17863 231 -CLRLFDKAT-GELL-----EEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLV-------DSSQ--------- 286 (341)
Q Consensus 231 -~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~--------- 286 (341)
.+.+++... +... ..+.... ....+ +++|+ +.++++-..++.|+.+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~gi--avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGA--TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCE--EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEE--EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665333 1221 1221111 11233 67884 4555566678889999987 5553
Q ss_pred --eEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 287 --ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 287 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
...+...+.......++|+|+|++|..+. ...|+.++.+.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 22322112334568999999999655544 77888866543
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.56 E-value=0.025 Score=46.67 Aligned_cols=255 Identities=13% Similarity=0.148 Sum_probs=149.2
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
+.+|.|-|+.++..+.+-. -.--+.-.+|..+.++.-. ..++.++|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEE
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEE
Confidence 3478888887765543222 1123445688888777655 67899999999888877764 3456556665433 444
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|++.... .-++++|.... .....|.....+++.++++..+
T Consensus 121 lVT-~taVyHWsi~~~s---------------------~P~kvFdR~~~---------L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGES---------------------QPVKMFDRHSS---------LAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp EEC-SSEEEEEESSSSC---------------------CCEEEEECCGG---------GTTCEEEEEEECTTSSEEEEEE
T ss_pred EEc-CCeeEEecccCCC---------------------Cchhheecchh---------cccceEEEEEECCCCCeEEEEe
Confidence 444 4578889886522 12333332211 1234566777777777766543
Q ss_pred --------CCceEEEEccccc------CCCCeEEEEEccC---CCEEEEeec---CCeEEEEecccc---ce------ee
Q psy17863 194 --------GNNVKLWTAEEDY------GQEPIVDACFTRD---CQCILTCST---DECLRLFDKATG---EL------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~---d~~i~i~d~~~~---~~------~~ 244 (341)
.|.+.+|..+... |......+.+..+ ...++.+.. .+.+++.++... .. +.
T Consensus 170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd 249 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE
T ss_pred ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee
Confidence 2578888887654 2122222222111 122333332 268888887432 11 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
. +......-..+.+..++.-..++.-+.-|.|++||++++.++..-+ -...+|...+-+....-++... .|.|.--
T Consensus 250 v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr--Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec--ccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 1 1111122344555778888889999999999999999999988877 4556666555555444444444 7776665
Q ss_pred Ecccc
Q psy17863 323 TAEED 327 (341)
Q Consensus 323 ~~~~~ 327 (341)
.+++.
T Consensus 328 ~v~e~ 332 (494)
T 1bpo_A 328 CVEEE 332 (494)
T ss_dssp EECTT
T ss_pred EEccc
Confidence 55543
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.55 E-value=0.02 Score=54.45 Aligned_cols=235 Identities=12% Similarity=0.160 Sum_probs=134.5
Q ss_pred EccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc---
Q psy17863 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH--- 96 (341)
Q Consensus 21 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~--- 96 (341)
.+|..+.+|.=. ..++.|+|+++...++.+.-. .+|.-=.|-.+. .|+..+. ..|.-|++.. ..+.+.+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchhc
Confidence 466666666544 678999999988888777643 445555565333 4443333 4699999964 3455555544
Q ss_pred -CccEEEEEEcCCCcEEEEec-------CCCeEEEEEecCCCCcCeEE----------eecCCCceEEEeec----cCeE
Q psy17863 97 -ASKVTCVKFNEDSSVVISGS-------QDNTVMMWDVKSRSHHPIQC----------CLDSKDSQIFCGSS----DGKI 154 (341)
Q Consensus 97 -~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~----~g~i 154 (341)
...|..-..+++.++++..| -.|.+.+|..+.+....+.. -.......+++-.. .+++
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 45677777788888777543 34788888887654322211 00111122322211 2566
Q ss_pred EEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 155 YKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 155 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
++.++... .....+. .....+-+.|+. ...-..++..++....+..-+.-|.+.
T Consensus 229 hi~Ei~~~~~~~~~f~-----kk~~~~~~~~~~--------------------~~Dfpv~~~vs~k~g~iy~itk~G~~~ 283 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYGYIH 283 (1630)
T ss_pred EEEecCCCccCCCCCc-----cccccccCCccc--------------------ccCcceEEEeccccCEEEEEecCceEE
Confidence 66666432 1101110 001222222221 123345677788778888889999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+||+.++.++..-+-....+... +......-++.....|.|.--.+.....
T Consensus 284 ~~d~~t~~~i~~~ris~~~iF~~--~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 284 LYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEecccchhhhhccccCCceEEe--ccCCCCCceEEEcCCceEEEEEEccchh
Confidence 99999999877666555555544 3333333344444666666665554443
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.55 E-value=0.023 Score=46.03 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=62.7
Q ss_pred CCCeEEEEEccCCCEEEEee-----------------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 208 QEPIVDACFTRDCQCILTCS-----------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
-...+.+.+.++|.+.++.. ..|.|..+|. ++. ..+...-.....+ +++||++.|+.+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGi--a~spDg~~lYva 238 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGI--NISPDGKYVYIA 238 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEE--EECTTSSEEEEE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcc--eECCCCCEEEEE
Confidence 34678899999999777654 1245555554 222 2221111222344 899999877765
Q ss_pred -cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC
Q psy17863 271 -SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC 315 (341)
Q Consensus 271 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 315 (341)
+..+.|+.|++.....+............-.+++.+ +|.+.+++.
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred eCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 457889999986432222211112245678889999 599888665
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.45 E-value=0.033 Score=45.36 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEec---CcccceeEEEEecC---CCEEEEecC----C----C
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYG---GHAHEVNDATAACD---SSQIASGAS----D----K 77 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 77 (341)
-.....++|.|+|+++++ ..+|.|++++. +++ .+..+. ........++++|+ +..|.++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 355789999999985554 66799999973 444 222221 12346789999997 445554432 2 5
Q ss_pred cEEEEECCCC--c-----ee-eeecc-cCccEEEEEEcCCCcEEEEecC
Q psy17863 78 SVILWEVTTG--Q-----PV-RRWRE-HASKVTCVKFNEDSSVVISGSQ 117 (341)
Q Consensus 78 ~i~iw~~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 117 (341)
.|..|+.... . .+ ..+.. .......++|.|||.+.++.+.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 6777776543 1 11 11221 1112356899999986666543
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.021 Score=45.80 Aligned_cols=103 Identities=10% Similarity=0.174 Sum_probs=67.6
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeeccc-CccEEEEEEc--C-CCcEEEEe-cCCCeEEEEEecCCCCc----------
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFN--E-DSSVVISG-SQDNTVMMWDVKSRSHH---------- 132 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~i~iwd~~~~~~~---------- 132 (341)
..+++++.||.|.-.|.++|+...+++.. ..++....-. + ++..++.. +.||.+..++..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887653 1222221100 1 22333333 57888888876654311
Q ss_pred --CeEE--eec-------CCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 133 --PIQC--CLD-------SKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 133 --~~~~--~~~-------~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+... ... ..++.+++|+.+|++...|+.+++.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1110 000 1677899999999999999999999887754
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.38 E-value=0.077 Score=48.17 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=161.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+ |+.+ -+.+++..+++...... -....|.++....++. |..|+..| +.++...
T Consensus 232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~- 306 (758)
T 3ott_A 232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN- 306 (758)
T ss_dssp EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-
T ss_pred CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-
Confidence 4588888887887554 4444 47888876654322111 1224588888777765 44555556 5554332
Q ss_pred Cceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------------CcCeEEeecCCC
Q psy17863 87 GQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------------HHPIQCCLDSKD 142 (341)
Q Consensus 87 ~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~ 142 (341)
.. ...+. .....|.++.-..+|.+-+ |+.+| +..++..++. ...+.++....+
T Consensus 307 ~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 383 (758)
T 3ott_A 307 SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE 383 (758)
T ss_dssp C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT
T ss_pred Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC
Confidence 21 11111 1234688888887776544 44454 5555543211 112344444556
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeee----cCceEEEEEECCCCceEEEeCCCceEEEEcccc-------------
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED------------- 205 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------- 205 (341)
+.+..|+ ++-+..+|..+.+......... ....+.++...+++.+.+.+.++.+..++....
T Consensus 384 g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~ 462 (758)
T 3ott_A 384 QQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQN 462 (758)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEE
T ss_pred CCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccc
Confidence 6677777 4578889987654332211111 224578888888888888777777888875420
Q ss_pred ------cCCCCeEEEEEccCCCEEEE-eecCCeEEEEeccccceeeeecC-c--ccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 206 ------YGQEPIVDACFTRDCQCILT-CSTDECLRLFDKATGELLEEYKG-H--KSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 206 ------~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
.....|.++...++|++.+. ++.+ -|..+|..+++....... . ...+.++ ..+.+|.+.+ |+..|
T Consensus 463 ~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~-Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i--~~d~~g~lWi-gt~~G- 537 (758)
T 3ott_A 463 YSVHNGLSGMFINQIIPDNEGNVWVLLYNNK-GIDKINPRTREVTKLFADELTGEKSPNYL--LCDEDGLLWV-GFHGG- 537 (758)
T ss_dssp ECGGGTCSCSCEEEEEECTTSCEEEEETTCS-SEEEEETTTTEEEEECTTTSCGGGCEEEE--EECTTSCEEE-EETTE-
T ss_pred cccccccccceeeeEEEcCCCCEEEEccCCC-CcEEEeCCCCceEEecCCCcCCCcccceE--EECCCCCEEE-EecCc-
Confidence 12235888888999987663 4444 488889876654332111 1 1233444 5667775554 44444
Q ss_pred EEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 276 IYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+..++..+++... +. .......|.++... +|.+.+++..| +..++..+
T Consensus 538 l~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi~t~~G-l~~~~~~~ 586 (758)
T 3ott_A 538 VMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWVSTTNG-LWIIDRKT 586 (758)
T ss_dssp EEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEEEESSC-EEEEETTT
T ss_pred eEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEEECCCC-eEEEcCCC
Confidence 7788865543221 11 00112456666653 55544444343 55555543
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.37 E-value=0.036 Score=44.20 Aligned_cols=61 Identities=7% Similarity=0.084 Sum_probs=33.8
Q ss_pred EEEEEeCCCeEEEEcCCCcceee-EecCcccceeEEEEecCCCEEEEecC----C-------CcEEEEECCCCce
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGAS----D-------KSVILWEVTTGQP 89 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~ 89 (341)
+++.|+ ..+.+||+.+++-.. .+..............++..++.|+. + ..+..||..+++-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 344555 579999988876432 12211122233333457777777773 1 1267788877653
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.34 E-value=0.0085 Score=44.42 Aligned_cols=104 Identities=11% Similarity=-0.028 Sum_probs=65.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee------eEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL------KTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..+..++|+|+|.+.++ .+|.+.-.+..+.+.. ..+- .--....++.|.|+|.+.++ .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999986666 6787777776552211 1111 01112578999999988777 569888777533
Q ss_pred Cceee------ee-cccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 87 GQPVR------RW-REHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 87 ~~~~~------~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
..... .+ ..--..+..+.+.|+|.+.+.. |+.+.-
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 21111 00 1112567999999999876666 777543
No 323
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.32 E-value=0.076 Score=46.88 Aligned_cols=305 Identities=6% Similarity=0.013 Sum_probs=164.2
Q ss_pred cEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec--CCCcEEEEECCCCceee
Q psy17863 15 AIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA--SDKSVILWEVTTGQPVR 91 (341)
Q Consensus 15 ~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~ 91 (341)
....+++.+.+..| ++-...+.|.+.++........+...-.....+++.|....|+... ..+.|...+++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 45678887655444 4545567889988765433222323345568999998655665554 25678888875443332
Q ss_pred eecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecCCCCc--------CeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
... .-.....++++++++.|+.+ ...+.|...|+...... +...... .+...++-...+.|...|..++
T Consensus 161 l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~-~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 161 LVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY-QDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEE-CCEEEEecCCCCEEEEEECCCC
Confidence 232 34567899999976666555 45678888888764431 1111111 2333334444677777776555
Q ss_pred cceeeeEeeec-----------------C-----ceEEEE----------EECC-------CC-------ceEEEeCCCc
Q psy17863 163 SQISTLIHSVG-----------------K-----AVVNSL----------CSHP-------TR-------KHIMSACGNN 196 (341)
Q Consensus 163 ~~~~~~~~~~~-----------------~-----~~~~~~----------~~~~-------~~-------~~~~~~~~~~ 196 (341)
+....+..... . .....+ +..| ++ .+++.+....
T Consensus 239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~ 318 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA 318 (628)
T ss_dssp CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTE
T ss_pred CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccce
Confidence 43322211000 0 000001 1111 11 2333333444
Q ss_pred eEEEEccccc---------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeeecC------cccceeEEEEEe
Q psy17863 197 VKLWTAEEDY---------GQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKG------HKSGDFRIECCL 260 (341)
Q Consensus 197 i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~ 260 (341)
|+-..+.... .-..+..++|.+....|+.. ...+.|+.+++........+.. .......+ ++
T Consensus 319 i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl--Av 396 (628)
T 4a0p_A 319 INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL--SI 396 (628)
T ss_dssp EEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE--EE
T ss_pred EEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE--Ee
Confidence 5444443221 12446788898865555544 3467788887654332222321 11234455 77
Q ss_pred CCCCCEE-EEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC-CC--cEEEEEcc
Q psy17863 261 DSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GN--NVKLWTAE 325 (341)
Q Consensus 261 ~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~--~i~vw~~~ 325 (341)
+..++.| ++-+..+.|.+.++ +|+....+.. .......++++.| .|.++.+-. .. .|...+++
T Consensus 397 D~~~~nLY~td~~~~~I~v~~~-~G~~~~~l~~-~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 397 DIYSRYIYWTCEATNVINVTRL-DGRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEET-TSCEEEEEEE-CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred eccCCeEEEEcCCCCEEEEEEC-CCCeEEEEEe-CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 7765544 46667788999986 4555555542 2345689999999 455444433 33 34444444
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.29 E-value=0.043 Score=43.49 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCEEEEEeCC----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC------CcEEEEECCCCce
Q psy17863 24 DGSYCLTCGSD----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------KSVILWEVTTGQP 89 (341)
Q Consensus 24 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~ 89 (341)
++.+++.|+.+ ..+.+||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||..+.+-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56677777754 678889987765332211111111111112267777777654 4588899887653
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.28 E-value=0.018 Score=45.60 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCCC-----cEEEEECCCCce
Q psy17863 24 DGSYCLTCGSD-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASDK-----SVILWEVTTGQP 89 (341)
Q Consensus 24 ~~~~l~t~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~ 89 (341)
++.+++.|+.+ ..+.+||+.+.+-... +...... .+++. -+++.++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 56677777754 3588888876543222 1111111 12222 2667777776543 477788776643
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.22 E-value=0.059 Score=43.80 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred CCCEEEEEeC-CCeEEEEcCCC--cc--eeeEecCcccceeEEEEecCCCEEEEecC-C---------CcEEEEECCCCc
Q psy17863 24 DGSYCLTCGS-DKKIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGAS-D---------KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~~-dg~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~~ 88 (341)
++++++.|+. ...+.+||+.+ .+ .+..+......-.+++. -++++++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 6667777765 34688888864 22 22222211111122222 25677777765 2 468899988765
Q ss_pred eee--eec-ccCccEEEEEEcCCCcEEEEecCC
Q psy17863 89 PVR--RWR-EHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 89 ~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
-.. .+. .....-..+. .++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 322 121 1111122222 456777777754
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.03 E-value=0.096 Score=42.56 Aligned_cols=63 Identities=5% Similarity=-0.058 Sum_probs=40.4
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
++.++++.-..+.|...++..++........ .....+..+++.|||.++++..+..=+||.+.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 5677777777888888888765433322210 12347899999999987776442333566654
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.99 E-value=0.094 Score=41.83 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=32.0
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecC----CC-------cEEEEECCCCce
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGAS----DK-------SVILWEVTTGQP 89 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~ 89 (341)
+++.|+. .+..||+.+.+-... +..............++..++.|+. ++ .+..||..+++-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4445543 488999887764331 1111112222233456777777773 12 166778776543
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.98 E-value=0.066 Score=39.77 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=74.6
Q ss_pred CCEEEEEeCCCeEEEEcCCCcc------eeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNL------LLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA 97 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 97 (341)
...|++...| +++.=...++. ...++-. .=..+..++|+|++.+.++ .+|.+.-.+..+.+.. .+.+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccc
Confidence 4456666666 66555544433 1122211 1246889999999986666 6676666555442221 111112
Q ss_pred cc--------EEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 98 SK--------VTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 98 ~~--------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.. ..++.|.|+|.+.++ .||.|.-++..+.. -..+..+...+++.|.+.. ++.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 22 378899999987777 56988877753321 1345667777777777777 7775
Q ss_pred EE
Q psy17863 155 YK 156 (341)
Q Consensus 155 ~~ 156 (341)
+-
T Consensus 157 yr 158 (236)
T 1tl2_A 157 YK 158 (236)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.89 E-value=0.1 Score=41.54 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=35.9
Q ss_pred EccCCCEEEEEeC-----C------CeEEEEcCCCcceee--EecCcccceeEEEEecCCCEEEEecCC--------CcE
Q psy17863 21 FNVDGSYCLTCGS-----D------KKIKLWNPYRNLLLK--TYGGHAHEVNDATAACDSSQIASGASD--------KSV 79 (341)
Q Consensus 21 ~~~~~~~l~t~~~-----d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i 79 (341)
...+++.++.|+. . ..+.+||+.+.+-.. .+...... .+++.. +++.++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 3457778888873 1 137788887765322 11111111 122222 56667777632 458
Q ss_pred EEEECCCCc
Q psy17863 80 ILWEVTTGQ 88 (341)
Q Consensus 80 ~iw~~~~~~ 88 (341)
.+||..+++
T Consensus 120 ~~~d~~~~~ 128 (315)
T 4asc_A 120 MCYDRLSFK 128 (315)
T ss_dssp EEEETTTTE
T ss_pred EEECCCCCc
Confidence 888987764
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.35 Score=46.44 Aligned_cols=254 Identities=13% Similarity=0.159 Sum_probs=134.3
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
..+|.|-|+.++..+.+-. -.--+.-.+|..+.++.-. ..++.|+|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeE
Confidence 3478888877765442211 1122344677777666654 67899999998877776653 4456666665433 344
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|++.... .|. +++|.. .......|..-..+++.++++..+
T Consensus 121 lVT-~~aVyHW~~~~~s-~P~--------------------k~fdR~---------~~L~~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGES-QPV--------------------KMFDRH---------SSLAGCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred EEc-CCeEEEeccCCCC-ccH--------------------HHHhcc---------hhcccCeeEEeeeCCCCCeEEEEe
Confidence 443 3578888886421 111 111110 001123456666667777665433
Q ss_pred --------CCceEEEEccccc------CCCCeEEEEEc--c-CCCEEEEeec---CCeEEEEecccc---ce------ee
Q psy17863 194 --------GNNVKLWTAEEDY------GQEPIVDACFT--R-DCQCILTCST---DECLRLFDKATG---EL------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~------~~~~i~~~~~~--~-~~~~l~~~~~---d~~i~i~d~~~~---~~------~~ 244 (341)
.|.+.+|..+... |......+.+. + ....++.+.. .+.+++.++... .+ +.
T Consensus 170 i~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred eccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 2678888877643 11111111111 1 1122222211 267888887432 11 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
. +......-..+.+..++.-..++.-+.-|.|.++|+.++.++..-+ -...+|...+-++...-++... .|.|.--
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 1 1111112233444677777788888999999999999998876655 3344444444333322233333 5555444
Q ss_pred Eccc
Q psy17863 323 TAEE 326 (341)
Q Consensus 323 ~~~~ 326 (341)
.+++
T Consensus 328 ~v~~ 331 (1630)
T 1xi4_A 328 CVEE 331 (1630)
T ss_pred EEcc
Confidence 4443
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.77 E-value=0.065 Score=42.54 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCCEEEEEeC----C-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-----CcEEEEECCCC
Q psy17863 24 DGSYCLTCGS----D-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-----KSVILWEVTTG 87 (341)
Q Consensus 24 ~~~~l~t~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 87 (341)
++++++.|+. + ..+.+||+.+.+-... +.........+. -+++.++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666777765 2 3588888876543221 111111112222 266777777643 45888888776
Q ss_pred ce
Q psy17863 88 QP 89 (341)
Q Consensus 88 ~~ 89 (341)
+-
T Consensus 148 ~W 149 (308)
T 1zgk_A 148 EW 149 (308)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.76 E-value=0.16 Score=41.06 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=40.8
Q ss_pred CeEEEEEccCCCEEEEee-cCCeEEEEeccc-cce--eeeecCcccceeEEEEEeCC-CCCEEEEecCC-CcEEEEe
Q psy17863 210 PIVDACFTRDCQCILTCS-TDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCLDS-KDSQIFCGSSD-GKIYKWQ 280 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d-g~i~iwd 280 (341)
..+.++|+||++.++.+. ..+.|..|++.. ++. .+.+. .....-.+ ++++ +|++.+++..+ +.|..|+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi--~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNI--SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEE--EECTTTCCEEEEEESCHHHHHSCC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceE--EEeCCCCcEEEEecCCceEEEEEC
Confidence 456799999998777654 567899999853 322 22332 12223334 7888 58877766433 3444444
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.021 Score=45.81 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccc-------eeEEEE-Ee--CCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-------DFRIEC-CL--DSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~-~~--~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
.+..+++|+.+|.+...|+.+|+.+.++...... ..+... .+ ...+..++.+..+..+.+.+ ++|+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence 4556899999999999999999999888643211 001100 00 01235677777777777766 4554
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.53 E-value=0.23 Score=40.01 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=40.3
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee--eee----cccCccEEEEEEcCC
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RRW----REHASKVTCVKFNED 108 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~----~~~~~~v~~~~~~~~ 108 (341)
.+...-..-..++|.|++.++++--..|.|++++..+++.. ..+ .........|+++|+
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 34334456689999999997777665899999986655432 111 123456789999985
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.52 E-value=0.22 Score=39.63 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=35.2
Q ss_pred EccCCCEEEEEeC----CC-------eEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-------CcEE
Q psy17863 21 FNVDGSYCLTCGS----DK-------KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-------KSVI 80 (341)
Q Consensus 21 ~~~~~~~l~t~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~ 80 (341)
...++..++.|+. ++ .+.+||..+.+-... +...... .+++.. +++.++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 3456778888873 12 277788776543221 1111111 122222 56677777653 3477
Q ss_pred EEECCCCce
Q psy17863 81 LWEVTTGQP 89 (341)
Q Consensus 81 iw~~~~~~~ 89 (341)
+||..+.+-
T Consensus 131 ~yd~~~~~W 139 (318)
T 2woz_A 131 CYDPVAAKW 139 (318)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCE
Confidence 888876643
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.23 E-value=0.36 Score=38.95 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=67.7
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce--eeEe----cCcccceeEEEEecC---CCEEEEe---
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL--LKTY----GGHAHEVNDATAACD---SSQIASG--- 73 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~--- 73 (341)
+..+-..-..-..|+|.|||+++++--..|.|++++..+++. +..+ .........++++|+ +..|...
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 344444456678999999999777755589999998665543 2222 123456789999995 3444432
Q ss_pred cCCCcEEEEECCCCc--------e--e-eeec-ccCccEEEEEEcCCCcEEEEecCC
Q psy17863 74 ASDKSVILWEVTTGQ--------P--V-RRWR-EHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~--------~--~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
..++.|.-|.+..+. . + ..+. .....-..|+|.|||.+.++.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 234556666665421 1 1 1121 111233568999999877776543
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.12 E-value=0.42 Score=38.74 Aligned_cols=61 Identities=7% Similarity=0.051 Sum_probs=36.7
Q ss_pred CcEEEEEEccC---CCEEEEEeC-C-----CeEEEEcCCCcc-----e-eeEec---CcccceeEEEEecCCCEEEEec
Q psy17863 14 GAIRAVRFNVD---GSYCLTCGS-D-----KKIKLWNPYRNL-----L-LKTYG---GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 14 ~~v~~~~~~~~---~~~l~t~~~-d-----g~i~iw~~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.....|+|+|+ +..|..+.. . +.|..++...+. . +..+. ........++|.|||.+.++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 46789999998 445544433 2 678888776431 1 11232 1112346899999997766643
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.90 E-value=0.54 Score=38.13 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=74.2
Q ss_pred eEEEEEECCCCc-eEEEeCCCceEEEEccccc-------------CCCCeEEEEEccC---CCEEEEe-ec-------CC
Q psy17863 176 VVNSLCSHPTRK-HIMSACGNNVKLWTAEEDY-------------GQEPIVDACFTRD---CQCILTC-ST-------DE 230 (341)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-------------~~~~i~~~~~~~~---~~~l~~~-~~-------d~ 230 (341)
....+++.|+++ ++++...+.|++++..... .......++++|+ +..|++. +. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 478999999999 8877777888888743321 1234578999995 4444433 22 23
Q ss_pred eEEEEecccc-------cee-eeec-----CcccceeEEEEEeCCCCCEEEEecC-------------CCcEEEEeeeCC
Q psy17863 231 CLRLFDKATG-------ELL-EEYK-----GHKSGDFRIECCLDSKDSQIFCGSS-------------DGKIYKWQLVDS 284 (341)
Q Consensus 231 ~i~i~d~~~~-------~~~-~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 284 (341)
.|..|+.... +.+ ..+. .|. ...+ +|.|+|.+.++-+. .|.|.-++.. +
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l--~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G 173 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRL--VFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-G 173 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCE--EECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-S
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccE--EECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-C
Confidence 5666665422 111 1111 121 1234 89999966555433 2456555543 2
Q ss_pred C-------------ceEEEEeeeeccceEEEEEcC-CCcEEEEe
Q psy17863 285 S-------------QISTLIHSVGKAVVNSLCSHP-TRKHIMSA 314 (341)
Q Consensus 285 ~-------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 314 (341)
+ ....+.. ++ .....++|+| +++++++-
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEe
Confidence 2 1222221 23 3477899999 56655543
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.85 E-value=0.77 Score=39.42 Aligned_cols=267 Identities=7% Similarity=-0.013 Sum_probs=146.9
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcc-------------------------cce--eEEEEe---cCCCEEEEec-C
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHA-------------------------HEV--NDATAA---CDSSQIASGA-S 75 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------~~v--~~~~~~---~~~~~l~~~~-~ 75 (341)
.|.+|+..|.|+|+-+.+++.++.+...+ +.. ..+++. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36788999999999999888877764211 001 123332 2577787765 4
Q ss_pred CCcEEEEECCCCceeeeecc-cCccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 76 DKSVILWEVTTGQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
+..|...+++..++-+.+.- ....+..++|- |+..+++.+++... -+ .+.+...++ ..+..+ +
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~-P~--pndg~~~~~----~~~~~y-------~ 217 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFII-PH--PNDGKVFDL----QDENSY-------T 217 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCE-ES--SCSSSCCCT----TSTTEE-------E
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeec-cC--CCCCccccc----CChhhc-------e
Confidence 67788888888777655543 45678888886 68889988876421 11 011110000 111121 1
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCc----------------eEEEEcccccCCCCeEEEEE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN----------------VKLWTAEEDYGQEPIVDACF 216 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~~~i~~~~~ 216 (341)
.....|..+.+...++... .........+++++.++.+-++ +.+++...-. ..
T Consensus 218 ~f~~iD~~tm~v~~Qv~v~---gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie--------~~ 286 (638)
T 3sbq_A 218 MYNAIDAETMEMAFQVIVD---GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE--------AA 286 (638)
T ss_dssp EEEEEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH--------HH
T ss_pred EEEEEcCCccEEEEEEEcC---CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH--------HH
Confidence 1223344443333333221 1234455677888877765321 2233322110 00
Q ss_pred ccCCCEEEEeecCC-eEEEEeccc----cc-eeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCC-----
Q psy17863 217 TRDCQCILTCSTDE-CLRLFDKAT----GE-LLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDS----- 284 (341)
Q Consensus 217 ~~~~~~l~~~~~d~-~i~i~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~----- 284 (341)
-.+|++-.. +| .+.+.|.+. +. .+..+....++ ..+ ..+|||++++.+ -.+.++.++|+...
T Consensus 287 vk~G~~~~~---~g~gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv--~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~ 360 (638)
T 3sbq_A 287 VKAGDFITL---GDSKTPVLDGRKKDGKDSKFTRYVPVPKNP-HGC--NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA 360 (638)
T ss_dssp HHTTCCBCC---TTCCCCEEECSCBTTBCCSSEEEEEESSSC-CCE--EECTTSCEEEEECTTSSBEEEEEGGGHHHHHT
T ss_pred HhcCCeEEE---CCCCeeEEccccccccCCceEEEEeCCCCC-cce--eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh
Confidence 113332211 21 367777654 22 22223322222 223 688999997765 46889999998742
Q ss_pred -Cc-------eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 285 -SQ-------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 285 -~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+. .... .-.-.....+|.++|....+-. |..|.-|+++..
T Consensus 361 ~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 361 GKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp TCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 11 1112 1234567789999996666666 999999999864
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.80 E-value=1 Score=40.44 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=59.5
Q ss_pred cCCCEEEEEeCC----CeEEEEcCCCcceeeEe-c------CcccceeEEEEec-CCCEEEEecCC------CcEEEEEC
Q psy17863 23 VDGSYCLTCGSD----KKIKLWNPYRNLLLKTY-G------GHAHEVNDATAAC-DSSQIASGASD------KSVILWEV 84 (341)
Q Consensus 23 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iw~~ 84 (341)
.++..++.||.+ ..+.+||+.+++....- . .....-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46888888776533222 1 1111122333343 67777777643 35788998
Q ss_pred CCCceee--eecccCccEEEEEEcCCCcEEEEecCCC--eEEEEEecCC
Q psy17863 85 TTGQPVR--RWREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSR 129 (341)
Q Consensus 85 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 129 (341)
.+.+-.. .+...... .+++...++..++.|+.++ .+.+||+.+.
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 8754322 22211111 2233323778888887655 6888887764
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.46 E-value=0.81 Score=37.02 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCEEEEEeC-C---------CeEEEEcCCCcceeeEecCc-ccceeEEEEecCCCEEEEecCC
Q psy17863 24 DGSYCLTCGS-D---------KKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 24 ~~~~l~t~~~-d---------g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 76 (341)
++++++.|+. + ..+.+||+.+.+-...-... .......+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 5667777775 2 46888998776432211111 1111111222467777887754
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.41 E-value=1 Score=37.95 Aligned_cols=60 Identities=8% Similarity=0.042 Sum_probs=38.3
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCcee--eeecc------cCccEEEEEEcCC---CcEEEEe
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RRWRE------HASKVTCVKFNED---SSVVISG 115 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~ 115 (341)
.....++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+.+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 45679999999987776554457888876555432 22221 2456779999995 4444443
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.19 E-value=1.2 Score=37.51 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=80.6
Q ss_pred ceEEEEEECCCCceEEEeCCC-ceEEEEccccc---------------CCCCeEEEEEccC---CCEEEEeec-------
Q psy17863 175 AVVNSLCSHPTRKHIMSACGN-NVKLWTAEEDY---------------GQEPIVDACFTRD---CQCILTCST------- 228 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~---------------~~~~i~~~~~~~~---~~~l~~~~~------- 228 (341)
.....+++.|+++++++...+ .|.+++..... .......++|+|+ +..|.+...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 346799999999988887764 57777643211 1345568999995 444444332
Q ss_pred ------CCeEEEEecccc-------ceee-eecCcccceeEEEEEeCCCCCEEEEecCC---------------------
Q psy17863 229 ------DECLRLFDKATG-------ELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSD--------------------- 273 (341)
Q Consensus 229 ------d~~i~i~d~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------------- 273 (341)
...|..++.... +.+. .+.. ...-..-.++|.|+|.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 234666654321 1111 1221 111112234899999877764431
Q ss_pred -----------CcEEEEeeeCCC-----------ceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 274 -----------GKIYKWQLVDSS-----------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 274 -----------g~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
|.|.-.+. ++. ....+. .+| .....++|+|+|++.++-. ++.-.|..+..
T Consensus 186 ~~~aq~~~~~~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a-~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNL-DGSIPKDNPSFNGVVSHIYT-LGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHTTCCTTCSSEEEEECT-TSCCCTTCCEETTEECSEEE-BCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred cccccCCCCCCeeEEEEeC-CCCCCCCCCCCCCCcceEEE-ECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 33333332 232 112222 133 3577899999888666654 55555555554
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.83 E-value=1.7 Score=37.36 Aligned_cols=117 Identities=8% Similarity=-0.050 Sum_probs=78.2
Q ss_pred eEEEEEccC----CcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------------------C
Q psy17863 153 KIYKWQLVD----SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------------------G 207 (341)
Q Consensus 153 ~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------------------~ 207 (341)
.+.+.|.+. ......+.. .......+..+|+|+++++++. .++.+++++.-. .
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP--~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP--VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE--ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CeeEEccccccccCCceEEEEe--CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 366777765 222222222 2334678899999999999984 789999988421 2
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEecccc----------ceeeeecCcccceeEEE---EEeCCCCCEEEEec
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATG----------ELLEEYKGHKSGDFRIE---CCLDSKDSQIFCGS 271 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 271 (341)
.......+|.++|....+-.-|..|..|++... ..+.++..|-++..... -.-.++|++|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 334567899999976667778999999998764 34556665654433221 02367889988874
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.86 E-value=1.2 Score=37.53 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCcEEEEeCC
Q psy17863 297 AVVNSLCSHPTRKHIMSACG 316 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~d 316 (341)
.....|+|.|||.+.++.+|
T Consensus 139 H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 139 HLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp SCEEEEEECTTSCEEEEECC
T ss_pred ccCCcEeECCCCcEEEEeCC
Confidence 45688999999988877773
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.44 E-value=3.1 Score=32.41 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=86.4
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|..++....- .++. . ||.|..|-.....++..-......|..++...+. .++. . ||.|..|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56666664432 2233 4 8999999754432222111123457777665332 3333 4 8999999765432221111
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
.-...|..++...+...+ -. ||.|..|-...... ..+..+.......++ -. +|.++.|-.....++.
T Consensus 99 ~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp GGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTSTTS
T ss_pred ccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCCCCC
Confidence 123467777776543333 34 89999997654221 122222222222233 23 7888888766543332
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
.... ....+..++.......++ .++.+..|-..
T Consensus 174 ~p~~--~~~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 174 VPAE--AQSGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp CCGG--GGSSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred Ccee--cCCCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 1100 112355555544443333 35666666543
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.63 E-value=4.7 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=30.3
Q ss_pred EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+..+..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 334667788899999999999999999999888764
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.95 E-value=7 Score=31.92 Aligned_cols=208 Identities=9% Similarity=0.123 Sum_probs=114.2
Q ss_pred cEEEEEE-ccCCCEEEEEeC--C---CeEEEEcCC--------CcceeeEecC-----cccceeEEEEecCCCEEEE--e
Q psy17863 15 AIRAVRF-NVDGSYCLTCGS--D---KKIKLWNPY--------RNLLLKTYGG-----HAHEVNDATAACDSSQIAS--G 73 (341)
Q Consensus 15 ~v~~~~~-~~~~~~l~t~~~--d---g~i~iw~~~--------~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~--~ 73 (341)
-.+.++. +.+++.+++-=. + -++-..+.. ++.++.-+.. +--.|..+...+++++-+. |
T Consensus 27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG 106 (381)
T 3q6k_A 27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIG 106 (381)
T ss_dssp CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECS
T ss_pred ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCC
Confidence 3456777 677877776533 2 234444322 1122144432 2235777777776654332 2
Q ss_pred cC-------------CCcEEEEECCCC--ceeeeeccc------CccEEEEEEc---CC----CcEEEEec-CCCeEEEE
Q psy17863 74 AS-------------DKSVILWEVTTG--QPVRRWREH------ASKVTCVKFN---ED----SSVVISGS-QDNTVMMW 124 (341)
Q Consensus 74 ~~-------------dg~i~iw~~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~~~~-~d~~i~iw 124 (341)
-. --.|.+||+.++ +.++++.-. .+.+..+++. |+ +.+++.+. ..+.|.++
T Consensus 107 ~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVy 186 (381)
T 3q6k_A 107 SVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIY 186 (381)
T ss_dssp SCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEE
T ss_pred CcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEE
Confidence 11 125889999999 888776432 3457788887 22 33444443 46778888
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC----CceEEEeCCCceEEE
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT----RKHIMSACGNNVKLW 200 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~ 200 (341)
|+.+++...+..-.+.++.. ..-.-+|.-..| ...+..++++|+ ++.|....-.+-++|
T Consensus 187 dl~~~~swRv~~~~~~pd~~-~~~~i~G~~~~~----------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 187 DHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEF----------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp ETTTTEEEEEECGGGSCCSC-EEEEETTEEEEE----------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred ECCCCcEEEEccCCCccccC-cceEECCEEeEe----------------ccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 88887643333211222210 011112221111 234889999998 777777665555555
Q ss_pred Eccccc---------------C--CCCeEEEEEc-cCCCEEEEeecCCeEEEEeccc
Q psy17863 201 TAEEDY---------------G--QEPIVDACFT-RDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 201 ~~~~~~---------------~--~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
.+.+.. . ...-..+++. .+|.++++--....|..|+..+
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 554311 1 1223345665 5777777777788899998764
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.84 E-value=11 Score=33.89 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=92.0
Q ss_pred CCceEEEeecc----CeEEEEEccCCcceeee-Ee----eecCceEEEEEECC-CCceEEEeCC-------CceEEEEcc
Q psy17863 141 KDSQIFCGSSD----GKIYKWQLVDSSQISTL-IH----SVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAE 203 (341)
Q Consensus 141 ~~~~~~~~~~~----g~i~~~d~~~~~~~~~~-~~----~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~ 203 (341)
.+..++.|+.+ ..+.+||..+.+-.... .. ......-.+++..+ +++.++.++. +.+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 34455555532 35777777765433222 10 01111122333333 6666666542 357778776
Q ss_pred ccc-------C-CCCeEEEEEccCCCEEEEeecCC--eEEEEecccccee--ee---ecCcccceeEEEEEeCCC-CCEE
Q psy17863 204 EDY-------G-QEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGELL--EE---YKGHKSGDFRIECCLDSK-DSQI 267 (341)
Q Consensus 204 ~~~-------~-~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~-~~~l 267 (341)
+.. . ...-.+++.-.++++++.|+.++ .+.+||..+.+-. .. +.........+ .+..+ ++.+
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~--v~~~~~~~iy 554 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL--EFDPVSKQGI 554 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE--EEETTTTEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE--EEeCCCCEEE
Confidence 633 1 11112333334888888887755 6899998765422 11 11111111112 34444 6677
Q ss_pred EEecC--C-----CcEEEEeeeCCCc-----eEEEEeee-eccceEEEEEcCCCcEEEEeC-C--------CcEEEEEcc
Q psy17863 268 FCGSS--D-----GKIYKWQLVDSSQ-----ISTLIHSV-GKAVVNSLCSHPTRKHIMSAC-G--------NNVKLWTAE 325 (341)
Q Consensus 268 ~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d--------~~i~vw~~~ 325 (341)
+.|+. + ..+.+||+.+... ...+.... ....-.+++...++++++.|+ + ..+.+||+.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77765 2 4588999888762 23332100 111111233334477777777 4 247888877
Q ss_pred cc
Q psy17863 326 ED 327 (341)
Q Consensus 326 ~~ 327 (341)
+.
T Consensus 635 t~ 636 (695)
T 2zwa_A 635 SE 636 (695)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.02 E-value=15 Score=31.07 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=34.2
Q ss_pred cceeEEEEecCCC-EEEEecCCCcEEEEECCCCc---eeeeec---------ccCccEEEEEEcCC
Q psy17863 56 HEVNDATAACDSS-QIASGASDKSVILWEVTTGQ---PVRRWR---------EHASKVTCVKFNED 108 (341)
Q Consensus 56 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~ 108 (341)
..-..|+|.|++. .|+++...|.|++++..... .+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999996 55666778999999753221 122111 11356788999985
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.89 E-value=15 Score=29.32 Aligned_cols=115 Identities=13% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCCeEEEEEcc---CCCEEEEeecCCeEEEEecccccee-------eeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 208 QEPIVDACFTR---DCQCILTCSTDECLRLFDKATGELL-------EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 208 ~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
...|..+..-+ +..+++..+.+|.++.-.+...... ..+... ..+..+ ........++..+..|.+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~--~~~~~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGA--VLCSAGDDLLLVSANGQSI 170 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEE--EEECTTCEEEEEETTSEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEE--EEecCCCEEEEEECCCeEE
Confidence 34455554333 5778999999999999887653321 122222 223222 2223445778888899988
Q ss_pred EEeee--CCCc-------eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 278 KWQLV--DSSQ-------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 278 iwd~~--~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.+... .-.. +..+.. .....|.++...+++.+|+..+ .|.++.-.+.+
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 88776 2111 110111 2345677776666666777777 99888877654
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.76 E-value=17 Score=29.77 Aligned_cols=162 Identities=7% Similarity=0.113 Sum_probs=90.2
Q ss_pred eEEEEEccCC--cceeeeEeeec----CceEEEEEEC---CC----CceEEEeC--CCceEEEEccccc----------C
Q psy17863 153 KIYKWQLVDS--SQISTLIHSVG----KAVVNSLCSH---PT----RKHIMSAC--GNNVKLWTAEEDY----------G 207 (341)
Q Consensus 153 ~i~~~d~~~~--~~~~~~~~~~~----~~~~~~~~~~---~~----~~~~~~~~--~~~i~~~~~~~~~----------~ 207 (341)
+|.+||+.+. +.++.+..... ...+..+.+. |. +.++..+. ...|.++|+.++. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888887 66666654321 2456777776 22 23333332 3678888876533 0
Q ss_pred ---------------CCCeEEEEEccC----CCEEEEeecCCeEEEEeccc-----cceee--eecCcccc-eeEEEEEe
Q psy17863 208 ---------------QEPIVDACFTRD----CQCILTCSTDECLRLFDKAT-----GELLE--EYKGHKSG-DFRIECCL 260 (341)
Q Consensus 208 ---------------~~~i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~--~~~~~~~~-~~~~~~~~ 260 (341)
...+..++++|+ ++.|.-....+ -++|.+.+ ..... +..+...+ ......++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 236778888987 67776655443 23343322 11111 11112211 12333367
Q ss_pred C-CCCCEEEEecCCCcEEEEeeeC-C---CceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 261 D-SKDSQIFCGSSDGKIYKWQLVD-S---SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 261 ~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
+ .+|.++++--....|..|+..+ . +....+.....-..+..+.+.++|.+.+.+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5 6787778878889999999764 1 2334444212223577788877877666653
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.57 E-value=14 Score=28.96 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=56.3
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----CCCcEE
Q psy17863 19 VRFNVDGSYCLTCGSD--------------KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----SDKSVI 80 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~ 80 (341)
--++++|++|+-+... ..|+..++...+.. .+.... ...|++++++|+-.. .+..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPDP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888866542 36777777655432 232221 236778888888665 334555
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecC
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKS 128 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 128 (341)
..++.. .....+..+.. .+++++++.|+-.+. ...|...++..
T Consensus 133 ~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 133 RIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 566653 33344433322 345666777765544 45565555544
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.47 E-value=30 Score=32.46 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.0
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45677788888999999999999999999999887765
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.17 E-value=20 Score=28.20 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=49.2
Q ss_pred EccCCCEEEEeecC--CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeeeCCCceEEEE
Q psy17863 216 FTRDCQCILTCSTD--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 216 ~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 291 (341)
+.|++.+|+-...+ ..|..-++.... ...+... .+ . .++|++++|+-+. ..+.|..-++ +|.....+.
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~--~~--~--~~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~ 262 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTEA--NI--E--HYNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELA 262 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSCS--CE--E--EEEEETTEEEEEECSSSCEEEEEET-TSCCCEEEE
T ss_pred eeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeCC--Cc--c--eEEECCCEEEEEECCCCcEEEEEEC-CCCccEEee
Confidence 45777777655443 356666665433 3333321 12 1 3677788877653 2355666664 444445554
Q ss_pred eeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEc
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTA 324 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~ 324 (341)
. . .+.. +++.+.+|.-.. .+.|..-++
T Consensus 263 ~--~--~~~~--i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 263 K--G--EFCN--INVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp E--S--CEEE--EEECSSEEEEEETTTCCEEEEES
T ss_pred C--C--ccce--EEEeCCEEEEEECCCCeEEEEEC
Confidence 1 1 2333 445566666555 555544443
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.96 E-value=11 Score=33.04 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=41.6
Q ss_pred EEEEEEccCCCEEEEEeCC------------CeEEEEcCCCcceeeEecCc-ccceeEEEEecCCCEEEEe
Q psy17863 16 IRAVRFNVDGSYCLTCGSD------------KKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASG 73 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~d------------g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 73 (341)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+.+. ..+++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 24666677777776666544 4679999999999888765
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.45 E-value=8.9 Score=36.73 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.6
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 247 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 247 (341)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556677888999999999999999999998877643
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.90 E-value=18 Score=31.46 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=43.9
Q ss_pred CcEEEEEEccCCCEEEEEeC------------CCeEEEEcCCCcceeeEecCc-ccceeEEEEecCCCEEEEec
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS------------DKKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~------------dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 74 (341)
.....|.|.++|.+.+.... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773221 126777788778766655543 35789999999999888763
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.51 E-value=23 Score=27.46 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=105.2
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----- 131 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----- 131 (341)
.|..++.... ..++. . ||.|..|-....-.+..-......|..++...+.. ++. . ||.|..|-......
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5777766532 22333 4 89999997654322211111233577777664433 333 4 89999997654221
Q ss_pred ---cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--
Q psy17863 132 ---HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-- 206 (341)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 206 (341)
..+..+..... ..++-+ +|.++.|-.....++.... .....+..++.......++. ++.+..|-.....
T Consensus 99 ~~~~~v~~ia~G~~-hs~al~-~G~v~~wG~n~~gqlg~~~--~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW-ASYALK-DGKVIAWGDDSDGQTTVPA--EAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT-EEEEEE-TTEEEEEECCTTSTTSCCG--GGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC-EEEEEe-CCeEEEecCCCCCcCCCCc--cCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCC
Confidence 12222222222 333445 9999999876544332111 11234666655554444333 6777777654322
Q ss_pred -----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 207 -----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 207 -----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
....|..++...+... +. .||.++.|-......+..-......+..+ +.... ..++.. ||.++.|-.
T Consensus 173 g~p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i--~~G~~-h~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTVPTEALSGVSAI--ASGEW-YSLALK--NGKVIAWGS 244 (282)
T ss_dssp SCCGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEE--EECSS-CEEEEE--TTEEEEEST
T ss_pred CCceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCCCcccCCCceEE--EcCCC-EEEEEE--CCEEEEecC
Confidence 1245666665554433 33 58999999754332221111111234444 32222 233333 899999975
Q ss_pred eCC
Q psy17863 282 VDS 284 (341)
Q Consensus 282 ~~~ 284 (341)
...
T Consensus 245 n~~ 247 (282)
T 3qhy_B 245 SRT 247 (282)
T ss_dssp TCC
T ss_pred CCC
Confidence 443
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.69 E-value=24 Score=27.28 Aligned_cols=119 Identities=6% Similarity=0.026 Sum_probs=69.5
Q ss_pred eEEeeeC---CcEEEEEEccCCCEEEEEeCCCeEEEE---cCCCcceeeEecCcccceeEEEEec--CCCEEEEecCCCc
Q psy17863 7 QTIDCKQ---GAIRAVRFNVDGSYCLTCGSDKKIKLW---NPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKS 78 (341)
Q Consensus 7 ~~l~~h~---~~v~~~~~~~~~~~l~t~~~dg~i~iw---~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 78 (341)
+..++|. +.+..+.-.....+|+.-+..|.++-- ++........+. ....|..+.. + +..+++..+.+|.
T Consensus 14 r~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 14 IPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGY 91 (276)
T ss_dssp EEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSE
T ss_pred eeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCE
Confidence 3444553 355555555555566666777876653 332221111133 3455666544 4 5678999999999
Q ss_pred EEEEECCCCc------eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 79 VILWEVTTGQ------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 79 i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
++-..+..-. ....++ ..+.+..+....+...++..+..|.+..+....
T Consensus 92 iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 92 VKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp EEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 9999875532 122233 234565655555566788888889888877543
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.66 E-value=29 Score=28.27 Aligned_cols=97 Identities=7% Similarity=-0.040 Sum_probs=48.0
Q ss_pred CEEEEEeCCCeEEEEcCCC-cceeeEe--cCcccceeEEEEec-CCCEEEEecCCC----cEEEEECCCCceeeeec---
Q psy17863 26 SYCLTCGSDKKIKLWNPYR-NLLLKTY--GGHAHEVNDATAAC-DSSQIASGASDK----SVILWEVTTGQPVRRWR--- 94 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~--- 94 (341)
..|..|...| +.+++... ++....+ ......|.+|++.| +...|.++...| .|... .+.++.-..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 3677777777 55554332 2222221 12345799999998 333444444444 33332 23333222111
Q ss_pred ---c--------cCccEEEEEEcC-C-CcEEEEecCCCeEEEE
Q psy17863 95 ---E--------HASKVTCVKFNE-D-SSVVISGSQDNTVMMW 124 (341)
Q Consensus 95 ---~--------~~~~v~~~~~~~-~-~~~l~~~~~d~~i~iw 124 (341)
. ....|.++++.| + ...++.++..+.|...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 0 112577899986 2 4556666555555443
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.63 E-value=2.2 Score=40.80 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=32.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 52 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 52 (341)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999887754
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=73.89 E-value=13 Score=32.42 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=36.5
Q ss_pred EeCCCCCEEEEecCC------------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe
Q psy17863 259 CLDSKDSQIFCGSSD------------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 259 ~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
+|++.|+++++-..+ ..+.+.+..+++.. .+........++.++|+||++.|.+.
T Consensus 482 ~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~-rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 482 GFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE-EEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred EECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE-EEEeCCCCccCcCeeECCCCCEEEEE
Confidence 789999866654322 23445555555544 44333456899999999999988765
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.63 E-value=8.1 Score=34.48 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=30.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 53 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 53 (341)
..|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666655 467999999999999999999998877654
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=70.08 E-value=31 Score=29.98 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=42.1
Q ss_pred ceeEEEEecCCCEEEEecC------------CCcEEEEECCCCceeeeeccc-CccEEEEEEcCCCcEEEEec
Q psy17863 57 EVNDATAACDSSQIASGAS------------DKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 116 (341)
....|.|.++|.+.+.... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899999987773321 125667777777766655433 46789999999999887763
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.12 E-value=45 Score=27.13 Aligned_cols=64 Identities=8% Similarity=-0.047 Sum_probs=34.0
Q ss_pred cCceEEEEEECC--CCceEEEeCCC----ceEEEEccc-------cc---C----------CCCeEEEEEccC--CCEEE
Q psy17863 173 GKAVVNSLCSHP--TRKHIMSACGN----NVKLWTAEE-------DY---G----------QEPIVDACFTRD--CQCIL 224 (341)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~~~~~~----~i~~~~~~~-------~~---~----------~~~i~~~~~~~~--~~~l~ 224 (341)
....+.++++.| .+.+.+.+..+ .|...+-.. .. . ...|.++++.|. ...+.
T Consensus 53 ~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 53 LGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 345688999998 55566555443 333321100 00 0 014667888872 45566
Q ss_pred EeecCCeEEEEe
Q psy17863 225 TCSTDECLRLFD 236 (341)
Q Consensus 225 ~~~~d~~i~i~d 236 (341)
++...+.|...+
T Consensus 133 ~g~~~ggl~~S~ 144 (394)
T 3b7f_A 133 AGTSPQGLFRST 144 (394)
T ss_dssp EEEETTEEEEES
T ss_pred EEecCCcEEEEc
Confidence 666666555543
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.01 E-value=42 Score=26.38 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=92.3
Q ss_pred cCCCEEEEecCCCcEEEEECCCCceee---------eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec---CCC--
Q psy17863 65 CDSSQIASGASDKSVILWEVTTGQPVR---------RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK---SRS-- 130 (341)
Q Consensus 65 ~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~-- 130 (341)
|+...+++.+.+|.|+--.+.+-+..+ .++. .+.+..+........|+..+..|.+.-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345667788888888776664322111 1222 2333333333344556666667776555432 211
Q ss_pred --------------CcCeEEe-e---cCCCceEEEeeccCeEEEEEccCCcce-----eeeEeeecCceEEEEEECCCCc
Q psy17863 131 --------------HHPIQCC-L---DSKDSQIFCGSSDGKIYKWQLVDSSQI-----STLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 131 --------------~~~~~~~-~---~~~~~~~~~~~~~g~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
...+..+ . ..++..++..+..|.++...+...... ..+....+...+.......+..
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 0112111 1 234557888999999988876532221 1122222333344444455566
Q ss_pred eEEEeCCCceEEEEccccc---------------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 188 HIMSACGNNVKLWTAEEDY---------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 188 ~~~~~~~~~i~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.++.+..|.+..+....-. ....+..+...+++..+++.+..|..+..++.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 7777777777777654311 23456666555556678888889988888764
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=66.12 E-value=47 Score=26.20 Aligned_cols=174 Identities=7% Similarity=0.044 Sum_probs=100.8
Q ss_pred cCCCEEEEecCCCcEEEEECCCCceee---------eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----
Q psy17863 65 CDSSQIASGASDKSVILWEVTTGQPVR---------RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS----- 130 (341)
Q Consensus 65 ~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----- 130 (341)
++..++++.+.+|.|+--.+..-+... .++ ..+.+..+........++..+..|.++-+....-.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 466778888999999888764332111 122 23344454444455567777788887766643210
Q ss_pred --------------CcCeE-Eeec---CCCceEEEeeccCeEEEEEccCCcce-----eeeEeeecCceEEEEEECCCCc
Q psy17863 131 --------------HHPIQ-CCLD---SKDSQIFCGSSDGKIYKWQLVDSSQI-----STLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 131 --------------~~~~~-~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
...+. .... ..+..++..+..|.++...+...... ..+........+......++..
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK 164 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence 01111 1111 24567888899999988877543221 1122222233344444455666
Q ss_pred eEEEeCCCceEEEEccccc---------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 188 HIMSACGNNVKLWTAEEDY---------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 188 ~~~~~~~~~i~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
.++.+..|....+....-. ....+..+..-+++..+++.+..|..+..++..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 7777777888777765411 234556665555566788888899988888754
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.65 E-value=52 Score=26.19 Aligned_cols=141 Identities=9% Similarity=0.092 Sum_probs=81.0
Q ss_pred CCceEEEeeccCeEEEEEccCCcce-----eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc--ccc-------
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQI-----STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE--EDY------- 206 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~------- 206 (341)
++..++..+.+|.++...+...... ..+....+...+.....+.....++.+..|.+..+... .-.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 4668999999999998876553321 11222223334444455556666777777877777665 211
Q ss_pred --------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce-------eeeec--CcccceeEEEEEeCCCCCEEEE
Q psy17863 207 --------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL-------LEEYK--GHKSGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 207 --------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 269 (341)
....|..+...+++..++..+..|.++.-.+..... +..++ .....+..+ ....+...++.
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~--~~~~~~~~i~l 265 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA--LIVDDDSELYA 265 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEE--EEECTTCEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEE--EEeCCCccEEE
Confidence 234566666666667889999999998887654322 11121 112222222 22233445666
Q ss_pred ecCCCcEEEEeeeC
Q psy17863 270 GSSDGKIYKWQLVD 283 (341)
Q Consensus 270 ~~~dg~i~iwd~~~ 283 (341)
.+.+|.+.-++...
T Consensus 266 ~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VTSGGGVIRTAARQ 279 (327)
T ss_dssp EEGGGCEEEEEGGG
T ss_pred EcCCCeEEEEehhh
Confidence 66777777776543
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.72 E-value=82 Score=25.60 Aligned_cols=175 Identities=12% Similarity=0.110 Sum_probs=96.8
Q ss_pred ecCCCEEEEecCCCcEEEEECCC---------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe---cCCC-
Q psy17863 64 ACDSSQIASGASDKSVILWEVTT---------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV---KSRS- 130 (341)
Q Consensus 64 ~~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~~~- 130 (341)
-|+..++++.+.+|.|+--.+.+ +..-..++ ..+.+..+........|+..+..|.+.-+.. ....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 35677888888899888765432 11122233 3445555555555556666666777665543 2211
Q ss_pred ---------------CcCeEE-eec---CCCceEEEeeccCeEEEEEccCCcc-----eeeeEeeecCceEEEEEECCCC
Q psy17863 131 ---------------HHPIQC-CLD---SKDSQIFCGSSDGKIYKWQLVDSSQ-----ISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 131 ---------------~~~~~~-~~~---~~~~~~~~~~~~g~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
...+.. ... ..+..++.++..|.++...+..... ...+........+.......+.
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 011111 111 2445889999999998887654322 1122222223334444445555
Q ss_pred ceEEEeCCCceEEEEccccc---------------CCCCeEEEEEcc---------------------------------
Q psy17863 187 KHIMSACGNNVKLWTAEEDY---------------GQEPIVDACFTR--------------------------------- 218 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~---------------~~~~i~~~~~~~--------------------------------- 218 (341)
..++.+..|.+..+....-. ....|..+...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 66666777776666654311 234555555444
Q ss_pred --CCCEEEEeecCCeEEEEeccc
Q psy17863 219 --DCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 219 --~~~~l~~~~~d~~i~i~d~~~ 239 (341)
++..+++.+..|..+...+..
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGG
T ss_pred ccCCceEEEeeCCCCEEEEEHHH
Confidence 446788889999988887654
No 372
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=52.68 E-value=78 Score=26.98 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEecCCCcEEEEeeeCCC--------ceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 266 QIFCGSSDGKIYKWQLVDSS--------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 266 ~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
.++.|+.+|.|.-.-+.... .+..+.......+|..|.++++..+|.+++ ++-++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 47789999987554332211 223333212357899999999999999999 554443
No 373
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=50.12 E-value=45 Score=28.81 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=41.4
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC----ceEEEEeeeeccceE-EEEEcCCCcEEEEeCCCcEE
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS----QISTLIHSVGKAVVN-SLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~ 320 (341)
.+.+......+-..++.|+.+|.|.-..+.... ....+.......+|. .|.+++++.+|.++++..|.
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~ 474 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVT 474 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccc
Confidence 334433333334457889999988766665332 222333212246785 89999999999999944433
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=50.00 E-value=1e+02 Score=25.05 Aligned_cols=211 Identities=13% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCEEEEecCCCcEEEEECCCC-c----------eeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC----
Q psy17863 67 SSQIASGASDKSVILWEVTTG-Q----------PVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---- 130 (341)
....+.-..||.|..|-.... + ....+.. ....+..++++......+.-..||.|..|-.....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445556677899999864321 1 0111111 22345556666655666667789999999643310
Q ss_pred --Cc----CeE---------EeecCCCceEEEeeccCeEEEEEccCCcce----------eeeEeeecCceEEEEEECC-
Q psy17863 131 --HH----PIQ---------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQI----------STLIHSVGKAVVNSLCSHP- 184 (341)
Q Consensus 131 --~~----~~~---------~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~- 184 (341)
.. +.. ..........++...+|.|+.|-.....++ ...........+..++...
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 00 000 011112234455667899999975432111 0111111123455666554
Q ss_pred CCceEEEeCCCceEEEEccccc-------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce---
Q psy17863 185 TRKHIMSACGNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--- 242 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--- 242 (341)
+...++...++.+..|-..... ....|..++... ...++-..+|.|+.|-....-.
T Consensus 222 ~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG~ 299 (389)
T 3kci_A 222 DAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLGH 299 (389)
T ss_dssp SCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCCC
Confidence 3455666667888888643311 112344444332 3344446788999996532111
Q ss_pred --------eeeecCc-ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 243 --------LEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 243 --------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
...+... ...+..+ +. .....++-..||.|+.|=...
T Consensus 300 g~~~~~~~P~~v~~l~~~~v~~i--a~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 300 GSDDHVRRPRQVQGLQGKKVIAI--AT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSCCCEEEEEECGGGTTCCEEEE--EE--CSSEEEEEETTCCEEEEECCT
T ss_pred CCCccccCCeEeccCCCCCEEEE--Ee--ccCeEEEECCCCCEEEeeCCC
Confidence 0111111 1123333 22 233445557899999997543
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.72 E-value=1.3e+02 Score=23.84 Aligned_cols=174 Identities=9% Similarity=0.054 Sum_probs=94.7
Q ss_pred cCCCEEEEecCCCcEEEEECCCC----ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec---CCC-------
Q psy17863 65 CDSSQIASGASDKSVILWEVTTG----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK---SRS------- 130 (341)
Q Consensus 65 ~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~------- 130 (341)
|+...+++.+.+|.|+--.+..- .....++. .+.+..+........|+..+..|.+.-+... ...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 45667888888888887654321 11112332 3344444444444556666667776555432 211
Q ss_pred ---------CcCeE-EeecC---CCceEEEeeccCeEEEEEccCCcc------eeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 131 ---------HHPIQ-CCLDS---KDSQIFCGSSDGKIYKWQLVDSSQ------ISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 131 ---------~~~~~-~~~~~---~~~~~~~~~~~g~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
...+. ..... .+..++..+..|.++...+..... ...+........+......++...++.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 01122 12222 245788899999999887753322 222222222233333444556667777
Q ss_pred eCCCceEEEEccccc---------------CCCCeEEEEEccCCC-EEEEeecCCeEEEEeccc
Q psy17863 192 ACGNNVKLWTAEEDY---------------GQEPIVDACFTRDCQ-CILTCSTDECLRLFDKAT 239 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~---------------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 239 (341)
+..|.+..+....-. ....+..+..-+++. .+++.+..|..+..++..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 777877777664311 234466665444444 688888888888777654
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=39.69 E-value=2.1e+02 Score=25.75 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCCcEEEEeeeCC-------CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCc--EEEEEcccc
Q psy17863 272 SDGKIYKWQLVDS-------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN--VKLWTAEED 327 (341)
Q Consensus 272 ~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~--i~vw~~~~~ 327 (341)
..+.|...++.++ .....+........+..+.|..+ .++++.. ++. +.++++.++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 4677999998764 22333332234557888999876 4555555 664 666666443
No 377
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=38.62 E-value=1.1e+02 Score=27.34 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=35.1
Q ss_pred EEEEecCCCcEEEE-eeeCCC-------ceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 266 QIFCGSSDGKIYKW-QLVDSS-------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 266 ~l~~~~~dg~i~iw-d~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
.++.|+.+|.|.-. ...... .+..+.......+|..|.++++.++|.+++ ++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 47788999987532 222111 122233223567899999999999999999 554443
No 378
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.15 E-value=85 Score=20.10 Aligned_cols=47 Identities=4% Similarity=0.145 Sum_probs=28.1
Q ss_pred EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 101 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 101 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
..+.+..+|++++.-. ++.+ +|...+... .....+.-..||.+.+|+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~---------~~~~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNTVGQ---------EGDYVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSCCCS---------SSCCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCCcCC---------CCCEEEEEcCCceEEEec
Confidence 3567778888777643 4443 787655321 122455666777777775
No 379
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=36.11 E-value=2e+02 Score=24.48 Aligned_cols=67 Identities=7% Similarity=0.138 Sum_probs=41.8
Q ss_pred ceeEEEEec----CCC--EEEEecCCCcEEEEECC-CCc-------eeeeec--ccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 57 EVNDATAAC----DSS--QIASGASDKSVILWEVT-TGQ-------PVRRWR--EHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 57 ~v~~~~~~~----~~~--~l~~~~~dg~i~iw~~~-~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
..++|+... +++ .++.|+.+|.|.=.-+. .+. .+..+. ....+|..+.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666643 243 47788889987543332 211 222222 23578899999999999999988776
Q ss_pred EEE
Q psy17863 121 VMM 123 (341)
Q Consensus 121 i~i 123 (341)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 380
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=33.90 E-value=1.1e+02 Score=26.74 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=35.2
Q ss_pred EEEEecCCCcEEEEeeeCCC----c--eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 266 QIFCGSSDGKIYKWQLVDSS----Q--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 266 ~l~~~~~dg~i~iwd~~~~~----~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
.++.|+.+|.|.-.-..... . +..+.......+|..+.++++...|..++ ++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 57788899987644332221 1 11222112456899999999999999988 544443
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=33.66 E-value=94 Score=19.88 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=14.5
Q ss_pred EEEECCCCceEEEeCCCceEEEEccc
Q psy17863 179 SLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
.+.+..+|.+++....+. .+|....
T Consensus 60 ~l~l~~dGNLVl~d~~~~-~iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLN-TVFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECTTSC-EEEECSC
T ss_pred EEEEeCCCcEEEECCCCC-EEEECCC
Confidence 455666777766654443 3666544
No 382
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=33.40 E-value=62 Score=23.58 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=40.3
Q ss_pred EEEE-eecCCeEEEEeccccceeeeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 222 CILT-CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 222 ~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+-+. ...+|.+++-+..++.++..+.. .+....|.-+. ...+=+.-..+|.+.|=++.+++++....
T Consensus 99 W~i~~~~p~G~VqFvN~~TgtCL~ay~n---Gvv~~~C~~s~~~Q~wsiiPttnGAVQIKnvatg~CL~t~~ 167 (206)
T 1sr4_A 99 WKMEPGKHREYFRFVNQSLGTCVEAYGN---GLIHDICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNP 167 (206)
T ss_dssp EEEEECSSTTCEEEEETTTCCEEEEETT---EEEEECCCTTCGGGCEEEEEBTTSCEEEEETTTCCEEEECS
T ss_pred eEEEeecCCCEEEEEECCCCceeeeccC---CeEEecCCCCCcccEEEEecCCCccEEEEECCCCccCCccC
Confidence 3444 56788899999998888877543 23222122111 11233333457788888888888887643
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.50 E-value=2.8e+02 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.6
Q ss_pred ccCCCEEEEeecCCeEEEEeccccceeeeecC
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKG 248 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 248 (341)
..+..++++-+.|.++|+|++++++++.+..-
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 33578999999999999999999988776543
No 384
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.19 E-value=2.1e+02 Score=24.73 Aligned_cols=68 Identities=9% Similarity=0.006 Sum_probs=43.1
Q ss_pred CcEEEEEEccCC--CEEEEEeCCCeEEEEcCCCc----ceeeEec--Cccccee-EEEEecCCCEEEEecCCCcEEE
Q psy17863 14 GAIRAVRFNVDG--SYCLTCGSDKKIKLWNPYRN----LLLKTYG--GHAHEVN-DATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 14 ~~v~~~~~~~~~--~~l~t~~~dg~i~iw~~~~~----~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 81 (341)
...++|+....+ ..+..|..+|.|.=..+... ..+.++. ....+|. .+.+++++.+|++++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 457777766544 35668888987755544322 1233332 2245775 8999999999999888765444
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=30.53 E-value=1.8e+02 Score=22.28 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccccce-------eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE--E
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL-------LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK--W 279 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i--w 279 (341)
..+..+...+++..++..+..|.++...+..... +..+ .....+..+ ....++..++..+.+|.+.. +
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~--~~~~~~~~i~~~t~~G~~ir~~~ 242 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDL--IPIKEEVELLITTKNGKAFYDKI 242 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEE--EEESSEEEEEEEETTSCEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEE--EEeCCCCEEEEEcCCCeEEEeee
Confidence 4556655556667888889999988887654321 2222 112222222 11123335566666777666 6
Q ss_pred eee
Q psy17863 280 QLV 282 (341)
Q Consensus 280 d~~ 282 (341)
+..
T Consensus 243 ~~~ 245 (276)
T 3no0_A 243 NQK 245 (276)
T ss_dssp EGG
T ss_pred CHH
Confidence 654
No 386
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=30.49 E-value=1.5e+02 Score=25.48 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=41.0
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeee-CC--CceEEEEeeeeccce-EEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DS--SQISTLIHSVGKAVV-NSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~--~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
.+.+.+....+-..++.|+.+|.|.-.-+. ++ ..+..+.. ....+| ..+.++++..+|..++ .+.++|
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 344433333333456788899998755443 21 23344432 345677 4899999999999998 655554
No 387
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=30.20 E-value=2e+02 Score=22.58 Aligned_cols=179 Identities=9% Similarity=0.071 Sum_probs=98.5
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCccee---------eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-------
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLL---------KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT------- 86 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------- 86 (341)
++..++++.+.+|.|+--.+...+.. ..++.. ..+..+........++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678889999999998765432211 122333 3344444444556677778888877666532
Q ss_pred --Ccee---eeecccCccEEEEEEcC---CCcEEEEecCCCeEEEEEecCCC---------------CcCeEEeecCCCc
Q psy17863 87 --GQPV---RRWREHASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCLDSKDS 143 (341)
Q Consensus 87 --~~~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~ 143 (341)
|.++ -.+. ....|..+...+ +..+++..+..|.++...+..-. ...+......++.
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 1111 1122 233455543332 45678888899999888764321 1122223334456
Q ss_pred eEEEeeccCeEEEEEccCCcce-------eeeEeeecCceEEEEEEC-CCCceEEEeCCCceEEEEccc
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQI-------STLIHSVGKAVVNSLCSH-PTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 204 (341)
.++..+.+|.+..+....-... ..+... ....+..+..- ++...++.+..+......+..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 7888999999988887642211 111112 23345555443 444455666667777777654
No 388
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.77 E-value=1.1e+02 Score=19.48 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=13.3
Q ss_pred EEEECCCCceEEEeCCCceEEEEcc
Q psy17863 179 SLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
.+.+..+|.+++....+...+|...
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S~ 77 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVYP 77 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEES
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEec
Confidence 4455666666665544444455433
No 389
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.42 E-value=3.2e+02 Score=24.67 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=53.5
Q ss_pred CcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEecCc-------ccceeEEEEec-CCCEEEEecCC-------C
Q psy17863 14 GAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGH-------AHEVNDATAAC-DSSQIASGASD-------K 77 (341)
Q Consensus 14 ~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~d-------g 77 (341)
+.|..|+++|.. ..+.++...+.|..++- .++.-..+..+ ...|.+++++| +.+.++++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 389999999963 45666665666666542 23332223221 24589999998 33444444321 1
Q ss_pred cEEEEECCC-Cceeeeecc-c--------CccEEEEEEcC-CCcEEEEec
Q psy17863 78 SVILWEVTT-GQPVRRWRE-H--------ASKVTCVKFNE-DSSVVISGS 116 (341)
Q Consensus 78 ~i~iw~~~~-~~~~~~~~~-~--------~~~v~~~~~~~-~~~~l~~~~ 116 (341)
...||.-.+ |+.-..... . ...+..++++| +.+.++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 244555433 332111110 0 01246788988 445666665
No 390
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=27.82 E-value=1.3e+02 Score=19.67 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=27.9
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
|.....-......|..+.|.|.+..++.|. .++.|.++..++
T Consensus 72 GTwTe~E~DGdqEikqV~iD~~NQ~m~IGD---Dvk~Y~lnGnQL 113 (130)
T 3ge2_A 72 GTWTELESDGDQKVKQVTFDSANQRMIIGD---DVKIYTVNGNQI 113 (130)
T ss_dssp EEEEEECTTSCEEEEEEEEETTTTEEEETT---EEEEEEEETTEE
T ss_pred ceeEEEccCCCeeeEEEEEccCcCEEEecC---cceEEEecCCEE
Confidence 333333344556789999999999998874 366777654443
No 391
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=27.18 E-value=2.8e+02 Score=23.30 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=45.2
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccccee
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 254 (341)
..+..+.-.....++++.+.+.+....++ ....+..-.+.+.+.+ +.|-....-.++-.... ...+.
T Consensus 143 E~vt~l~n~epaGfIlaTStgrl~~lsir---Gkp~l~~~~l~~~~G~-l~gi~~~~sSl~G~~s~---------~~~ia 209 (450)
T 1xks_A 143 KTYSFLTAVQGGSFILSSSGSQLIRLIPE---SSGKIHQHILPQGQGM-LSGIGRKVSSLFGILSP---------SSDLT 209 (450)
T ss_dssp CCEEEEEEETTTEEEEEETTCCEEEEEEC---TTSCEEEEECTTCCCC----------------------------CCCC
T ss_pred ceEEEEeecCCceEEEEeccceEEEEEec---CCceEEEEEecCCCcc-cccccccccccccccCC---------CcceE
Confidence 44555555555567777777777777765 3345555555544322 21111100001100000 01122
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
.+.......++.+++.+.. .+..|++.++
T Consensus 210 ~v~~~~~~g~r~v~ilT~~-~lq~W~l~~~ 238 (450)
T 1xks_A 210 LSSVLWDRERSSFYSLTSS-NISKWELDDS 238 (450)
T ss_dssp EEEEEEETTTTEEEEEESS-EEEEEEECSS
T ss_pred EEEeccCCCcEEEEEEcCC-ceEEEEecCC
Confidence 3333455566677766664 4999999555
No 392
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.00 E-value=2.5e+02 Score=21.96 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=93.1
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceee---------EecCcccceeEEEEecCCCEEEEecCCCcEEEEEC---CC----
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLK---------TYGGHAHEVNDATAACDSSQIASGASDKSVILWEV---TT---- 86 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~---~~---- 86 (341)
|+..++++.+.+|.|+--.+.+.+... .++.. ..+..+........|+..+..|.+.-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455678888999999877654422111 12322 23334444444556666677787665544 22
Q ss_pred --Cceee---eecccCccEEEEEEc---CCCcEEEEecCCCeEEEEEecCCC---C------------cCeEEeecCCCc
Q psy17863 87 --GQPVR---RWREHASKVTCVKFN---EDSSVVISGSQDNTVMMWDVKSRS---H------------HPIQCCLDSKDS 143 (341)
Q Consensus 87 --~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~---~------------~~~~~~~~~~~~ 143 (341)
|.++. .+. ....|..+... +++.+++..+.+|.++.-.+..-. . ..+.......+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 22222 122 33456555432 355678889999999988764311 1 111222234455
Q ss_pred eEEEeeccCeEEEEEccCCccee-------eeEeeecCceEEEEEECCCCc-eEEEeCCCceEEEEcc
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQIS-------TLIHSVGKAVVNSLCSHPTRK-HIMSACGNNVKLWTAE 203 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ 203 (341)
.++..+.+|.+..++...-.... .+... ....+.++...+++. .++.+..|..+-.++.
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 78888888888888765432221 11111 233455555444444 4555555766666654
No 393
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.70 E-value=4.1e+02 Score=23.98 Aligned_cols=96 Identities=7% Similarity=0.016 Sum_probs=48.4
Q ss_pred cCCeEEEEeccccc-------eeeeecCcccceeEEEEEeCCCCCEEEEecCCCc--EEEEeeeCCC-ceEE-EEeeeec
Q psy17863 228 TDECLRLFDKATGE-------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK--IYKWQLVDSS-QIST-LIHSVGK 296 (341)
Q Consensus 228 ~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~ 296 (341)
..+.|...++.++. ....+-.+......-.+.+..+ .++++...++. ++++++.+++ .... +.. ...
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~l-p~~ 395 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKL-PYQ 395 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECC-CST
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCC-CCC
Confidence 35567777766542 2222222322222223356654 56677766664 6777776664 2333 221 123
Q ss_pred cceEEEEEcCCCc-EEEEeC----CCcEEEEEcc
Q psy17863 297 AVVNSLCSHPTRK-HIMSAC----GNNVKLWTAE 325 (341)
Q Consensus 297 ~~v~~~~~~~~~~-~l~~~~----d~~i~vw~~~ 325 (341)
+.+.....++++. ++++.+ -+.+..+++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4566666667664 333332 3456666654
No 394
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=23.27 E-value=1.5e+02 Score=18.67 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=25.5
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 102 CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 102 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.+.+..||++++.-. ++. .+|...+.... ....+.--.||.+.+++
T Consensus 54 ~L~l~~dGnLvL~d~-~~~-~vWss~t~~~~---------~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDS-SGR-SLWASHSTRGS---------GNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCCCCCS---------SCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEECC-CcE-EEEEecCCCCC---------CCEEEEEeCCCeEEEEC
Confidence 477888888776643 333 46776543221 12334445566666654
No 395
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.24 E-value=2.5e+02 Score=21.29 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=44.1
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEecccc-------ceeeeecCcccceeEEEEEeC-CCCCEEEEecCCCcEEEE
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATG-------ELLEEYKGHKSGDFRIECCLD-SKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iw 279 (341)
...|..+....++.+++..+..|.++...+... .....+... ..+..+ ... .++..++..+.+|.+..+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~--~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPP--VVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCC--EECCCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEE--EEecCCCCEEEEEcCCCeEEEE
Confidence 345666644345667888899999999887542 222223221 222222 233 234578888889998888
Q ss_pred eeeC
Q psy17863 280 QLVD 283 (341)
Q Consensus 280 d~~~ 283 (341)
....
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8754
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.18 E-value=2.8e+02 Score=21.92 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=44.4
Q ss_pred cceeEEEEec---CCCEEEEecCCCcEEEEECCCC--------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 56 HEVNDATAAC---DSSQIASGASDKSVILWEVTTG--------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 56 ~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
..|..+...+ ++.+++.++.+|.++-..+..- .....++. .+.+..+....+...++..+.+|.+..+
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf 170 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWF 170 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 3455543333 2567888999999999887422 22222332 2555555555455567778888988888
Q ss_pred EecC
Q psy17863 125 DVKS 128 (341)
Q Consensus 125 d~~~ 128 (341)
....
T Consensus 171 ~~~e 174 (323)
T 1wp5_A 171 DESE 174 (323)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 7643
No 397
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.93 E-value=2.8e+02 Score=24.73 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=35.0
Q ss_pred EEEEecCCCcEEEE-eeeCCC-ceEEEEeeeeccceEEEEEcCCC--cEEEEeC-CCcEEE
Q psy17863 266 QIFCGSSDGKIYKW-QLVDSS-QISTLIHSVGKAVVNSLCSHPTR--KHIMSAC-GNNVKL 321 (341)
Q Consensus 266 ~l~~~~~dg~i~iw-d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~v 321 (341)
.++.|+.+|.|.-. ...... .+..+.......+|..|.++++. .+|.+++ .+.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 57889999987544 322221 22222221235689999999988 8999888 544443
No 398
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.07 E-value=4.8e+02 Score=23.82 Aligned_cols=61 Identities=5% Similarity=-0.016 Sum_probs=37.0
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeEecC-------cccceeEEEEecC-CCEEEEec
Q psy17863 13 QGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGG-------HAHEVNDATAACD-SSQIASGA 74 (341)
Q Consensus 13 ~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~ 74 (341)
.+.|.+|+++|. ...+.+++..+.|...+ ..++.-..+.. ....+.++++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999995 35566667667666554 23333333322 1246999999984 34444443
No 399
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.04 E-value=3.7e+02 Score=23.57 Aligned_cols=67 Identities=7% Similarity=0.058 Sum_probs=41.7
Q ss_pred cEEEEEEc----cCC---CEEEEEeCCCeEEEE-cCCCc-----ceeeEec--CcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 15 AIRAVRFN----VDG---SYCLTCGSDKKIKLW-NPYRN-----LLLKTYG--GHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 15 ~v~~~~~~----~~~---~~l~t~~~dg~i~iw-~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
..+.|+.. .++ ..+..|..+|.|.-. ....+ -.+.++. ....+|..+.++++...|.+++.++.+
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 45556543 344 356678888876533 22222 1122232 245689999999999999998887765
Q ss_pred EE
Q psy17863 80 IL 81 (341)
Q Consensus 80 ~i 81 (341)
++
T Consensus 443 qV 444 (590)
T 3nvq_A 443 QV 444 (590)
T ss_dssp EE
T ss_pred Ec
Confidence 55
Done!