RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17863
(341 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 160 bits (408), Expect = 4e-47
Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 54/330 (16%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+T+ G + V F+ DG T D IK+W+ LL+T GH V D A+
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
D + +ASG+SDK++ LW++ TG+ VR H S V+ V F+ D ++ S S+D T+ +W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 125 DVKS-------RSH-HPIQCCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175
DV++ R H + S D + S DG I W L ++TL G
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-- 178
Query: 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235
VNS+ P + +L+ S+D ++L+
Sbjct: 179 EVNSVAFSPDGEK----------------------------------LLSSSSDGTIKLW 204
Query: 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLI-HS 293
D +TG+ L +GH++G + S D + S DG I W L + TL H+
Sbjct: 205 DLSTGKCLGTLRGHENG---VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261
Query: 294 VGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
V SL P K + S + +++W
Sbjct: 262 NS---VTSLAWSPDGKRLASGSADGTIRIW 288
Score = 103 bits (259), Expect = 2e-25
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
C+ T+ + +V F+ DG++ + D IKLW+ + T GH EVN
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ D ++ S +SD ++ LW+++TG+ + R H + V V F+ D ++ SGS+D T+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244
Query: 123 MWDVKSRSH--------HPIQCCLDSKDSQIFC-GSSDGKIYKWQ 158
+WD+++ + + S D + GS+DG I W
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 61.6 bits (150), Expect = 9e-11
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 269
+ F+ D + + T S D ++++D TGELL KGH + D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLAS 68
Query: 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 325
GSSD I W L + TL + V+S+ P I+S+ +K+W E
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGH--TSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE 123
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 100 bits (249), Expect = 2e-23
Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 24/298 (8%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
++T++ ++ ++ F+ DG + S D IKLW+ L T GH V+
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204
Query: 62 TAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ D IASG+SD ++ LW+++TG+ +R S F+ D S++ SGS D T
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264
Query: 121 VMMWDVKSRSHHPI----------QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170
+ +WD++S S + GSSDG + W L +S+L
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 171 SVGKAVVNSLCSHPTRKHIMSACGNN--VKLWTAEEDY------GQEPIVDACFTRDCQC 222
+ V+SL P ++S ++ ++LW G ++ F+ D +
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRV 384
Query: 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKW 279
+ + STD +RL+D +TG LL GH S R+ S D + GSSD I W
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTS---RVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 90.9 bits (224), Expect = 3e-20
Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 35/345 (10%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVND-ATA 63
+ + +I ++ F+ DG L+ SD IKLW+ L+ G H V+ A +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 64 ACDSSQIASGAS--DKSVILWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN 119
+ D + I +S D +V LW+++T G+ +R H+ VT + F+ D ++ SGS D
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 120 TVMMWDVKSRS-------HHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169
T+ +WD+++ H L I GSSDG I W L + + +
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 170 HSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEEDY--------GQEPIVDACFTRDC 220
+VV+S P + S + ++LW ++ F+ D
Sbjct: 239 SGHSDSVVSSF--SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 221 QCILTCSTDECLRLFDKATGELLEE--YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278
+ + + S+D +RL+D TG+LL KGH+ + D + GS DG I
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRL 355
Query: 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
W L + TL V S+ P + + S + V+LW
Sbjct: 356 WDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVRLW 397
Score = 67.0 bits (162), Expect = 3e-12
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN--PYRNLLLKTYGGHAHEVN 59
+ ++T+ ++ +V F+ DG + SD ++LW+ + L T GH V+
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
Query: 60 DATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ + D S + SG S D ++ LW++ TG+P++ H S V V F+ D VV SGS D
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTD 391
Query: 119 NTVMMWDVKSRS--------HHPIQCCLDSKDSQIFC-GSSDGKIYKW 157
TV +WD+ + S + S D + GSSD I W
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 65.5 bits (158), Expect = 8e-12
Identities = 65/260 (25%), Positives = 94/260 (36%), Gaps = 31/260 (11%)
Query: 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ-----------CCLDS 140
R H +T + F+ D +++SGS D T+ +WD+ + L S
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 141 KDSQIF---CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--N 195
D S DG + W L ++ + V SL P K + S
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 196 NVKLWTAEEDYGQE-------PIVDACFTRDCQC-ILTCSTDECLRLFDKATGELL-EEY 246
+KLW P+ F+ D I + S+D +RL+D +TG+LL
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
GH S + GSSDG I W L SS S + V S+ P
Sbjct: 239 SGHSDSVVS---SFSPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 307 TRKHIMSACG-NNVKLWTAE 325
K + S V+LW E
Sbjct: 295 DGKLLASGSSDGTVRLWDLE 314
Score = 58.9 bits (141), Expect = 1e-09
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 8 TIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
T+ +G + ++ F+ DGS ++ GS D I+LW+ LKT GH V + + D
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPD 381
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
++SG++D +V LW+++TG +R H S+VT + F+ D + SGS DNT+ +WD+
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
Query: 127 KSRSHH 132
K+
Sbjct: 442 KTSLKS 447
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 45.8 bits (109), Expect = 3e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+G+ ++ + H VT V F+ D + SGS D T+ +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 6e-05
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41
++T+ G + +V F+ DG Y + D IKLW+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 33.1 bits (76), Expect = 0.013
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83
LLKT GH V + D +ASG+ D ++ LW+
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 26.5 bits (59), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKW 279
+GELL+ KGH + S D + GS DG I W
Sbjct: 1 SGELLKTLKGHTG---PVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 26.5 bits (59), Expect = 2.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 208 QEPIVDACFTRDCQCILTCSTDECLRLFD 236
P+ F+ D + + + S D ++L+D
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.9 bits (104), Expect = 2e-06
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
G+ +R + H VT V F+ D +++ SGS D TV +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 1e-04
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41
++T+ G + +V F+ DG+ + D +++W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 33.1 bits (76), Expect = 0.011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82
LL+T GH V + D + +ASG+ D +V +W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 47.8 bits (113), Expect = 5e-06
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 40/223 (17%)
Query: 10 DCKQG-------AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
D KQG + A+ F+ DG + T G +KKIK++ +++ H V A+
Sbjct: 473 DLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFE-CESIIKDGRDIHYPVVELAS 531
Query: 63 AACDS---------SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVV 112
+ S SQ+AS + V +W+V Q V +EH +V + ++ D +++
Sbjct: 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591
Query: 113 ISGSQDNTVMMWD---------VKSRSHHPIQCCL----DSKDSQIFCGSSDGKIYKWQL 159
SGS D +V +W +K++++ CC+ +S S F GS+D K+Y + L
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAF-GSADHKVYYYDL 647
Query: 160 VDSS-QISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200
+ + T+I HS + V + S + S+ N +KLW
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRFVDSSTL---VSSSTDNTLKLW 687
Score = 39.3 bits (91), Expect = 0.003
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 34 DKKIKLWNPYRNLLLKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92
+ +++W+ R+ L+ H V + ++ D + +ASG+ D SV LW + G +
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 93 WREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKSRS--------HHPIQCCLDSKDS 143
+ A+ + CV+F +S ++ GS D+ V +D+++ H + DS
Sbjct: 614 IKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672
Query: 144 QIFCGSS-DGKIYKWQL 159
SS D + W L
Sbjct: 673 STLVSSSTDNTLKLWDL 689
Score = 34.7 bits (79), Expect = 0.080
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 29 LTCGSDK-KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87
L GSD +KLW+ + + + T A+ + +A G++D V +++
Sbjct: 591 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650
Query: 88 Q-PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ P+ H+ V+ V+F DSS ++S S DNT+ +WD+
Sbjct: 651 KLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDL 689
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 33.4 bits (76), Expect = 0.18
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDS 67
I C G + AV + V+G G I+L N R + GH + D C S
Sbjct: 34 IACSSGFV-AVPWEVEGG-----GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS 87
Query: 68 SQIASGASDKSVILWEV--------TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-D 118
+ASG+ D ++ +WE+ P + H K++ + +N + ++ S D
Sbjct: 88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147
Query: 119 NTVMMWDVKS 128
+ V +WD+++
Sbjct: 148 SFVNIWDIEN 157
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 33.3 bits (76), Expect = 0.20
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 12 KQGAIRAVRFN-VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD---- 66
++G I V FN D T D I W L + + T
Sbjct: 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF 133
Query: 67 ----SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ +AS +D V +W+V G+ V + H+ ++T +++N D S++ + S+D +
Sbjct: 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193
Query: 123 MWDVKS 128
+ D +
Sbjct: 194 IIDPRD 199
Score = 30.2 bits (68), Expect = 1.7
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 37/124 (29%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
V+ I C I ++ +N+DGS T DKK+ + +P D T
Sbjct: 159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP----------------RDGTI 202
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123
AS S + + W + + + ++ SQ +M+
Sbjct: 203 VSSVEAHASAKSQRCL-------------WAKRKDLIITLGCSK--------SQQRQIML 241
Query: 124 WDVK 127
WD +
Sbjct: 242 WDTR 245
Score = 29.9 bits (67), Expect = 1.9
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 142 DSQIFCGSSDGKIYKWQL----VDSSQISTLIHSVGKAVVNSLCS-HPTRKHIMSACGNN 196
++F S DG I W + + + ++H G + S HP+ +++++ G +
Sbjct: 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147
Query: 197 --VKLWTAEEDYGQEPIVDACFTR-------DCQCILTCST--DECLRLFDKATGELLEE 245
V +W E E I C + + L C+T D+ L + D G ++
Sbjct: 148 MVVNVWDVERGKAVEVI--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205
Query: 246 YKGHKSGDFRIECCL--DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294
+ H S + + CL KD I G S + + L D+ ++++ +V
Sbjct: 206 VEAHASA--KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254
>gnl|CDD|220425 pfam09822, ABC_transp_aux, ABC-type uncharacterized transport
system. This domain is found in various eukaryotic and
prokaryotic intra-flagellar transport proteins involved
in gliding motility, as well as in several hypothetical
proteins.
Length = 268
Score = 30.8 bits (70), Expect = 0.93
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 208 QEPI-VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE 257
EP+ + F+ L+ ELLEEY G ++E
Sbjct: 24 DEPVTITVFFSGK--------LPPELKPLRPRVRELLEEYAALSPGKIKVE 66
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the
elongation of the glucan chain of cellulose. Family of
proteins related to Agrobacterium tumefaciens CelA and
Gluconacetobacter xylinus BscA. These proteins are
involved in the elongation of the glucan chain of
cellulose, an aggregate of unbranched polymers of
beta-1,4-linked glucose residues. They are putative
catalytic subunit of cellulose synthase, which is a
glycosyltransferase using UDP-glucose as the substrate.
The catalytic subunit is an integral membrane protein
with 6 transmembrane segments and it is postulated that
the protein is anchored in the membrane at the
N-terminal end.
Length = 234
Score = 29.1 bits (66), Expect = 3.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 131 HHPIQCCLDSKDSQIFCGSS 150
+ IQ D + CGS
Sbjct: 145 YGVIQPGRDRWGAAFCCGSG 164
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 29.3 bits (66), Expect = 4.1
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY 206
S D KI + L + + V + N KLW+ E+ Y
Sbjct: 200 ASLDVKIQQVVANGLDLSVELRDAEQQVVATGQERGTGQGAAAGELKVENPKLWSPEDPY 259
Query: 207 GQEPIV 212
+V
Sbjct: 260 LYRLVV 265
Score = 28.5 bits (64), Expect = 6.7
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY 328
S D KI + L + + V + N KLW+ E+ Y
Sbjct: 200 ASLDVKIQQVVANGLDLSVELRDAEQQVVATGQERGTGQGAAAGELKVENPKLWSPEDPY 259
Query: 329 G 329
Sbjct: 260 L 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.415
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,815,625
Number of extensions: 1351288
Number of successful extensions: 1103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 40
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)