RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17863
(341 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 94.8 bits (234), Expect = 8e-23
Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 30/327 (9%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
+ + + V F+ S ++ D IK+W+ +T GH V D +
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+AS ++D ++ LW+ + +R H V+ V + ++S S+D T+ MW+
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 126 VKSR---------SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
V++ + + I S+D + W + + L
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
S + I A G+ K + +L+ S D+ ++++D
Sbjct: 190 CISWAPESSYSSISEATGSETK----------------KSGKPGPFLLSGSRDKTIKMWD 233
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
+TG L GH + S I + D + W + + TL + +
Sbjct: 234 VSTGMCLMTLVGHDNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--NAHE 289
Query: 297 AVVNSLCSHPTRKHIMSACGNN-VKLW 322
V SL H T ++++ + VK+W
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 82.1 bits (201), Expect = 2e-18
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
+ G + L+ DK IK+W+ + L T GH + V I S A DK+
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 270
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ +W+ + ++ H VT + F++ + V++GS D TV +W+
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 73.6 bits (179), Expect = 2e-15
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
CV+T + +R VR N DG+ +C +D+ +++W H H V +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 63 AACDSSQIA--------------------SGASDKSVILWEVTTGQPVRRWREHASKVTC 102
A +SS + SG+ DK++ +W+V+TG + H + V
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 103 VKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQ-IFCGSSDGK 153
V F+ ++S + D T+ +WD K++ H + K + + GS D
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312
Query: 154 IYKWQ 158
+ W+
Sbjct: 313 VKVWE 317
Score = 66.7 bits (161), Expect = 5e-13
Identities = 52/271 (19%), Positives = 86/271 (31%), Gaps = 36/271 (13%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-------RSHHPIQCCL 138
H S VT V F+ SV++S S+D T+ +WD ++ + H +
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198
S S + V+S+ P HI+SA +
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 199 LWTAEEDYGQEPIVDA--------CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
+ +D I +CS D+ +R++ AT E E + H+
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 251 SGDFRIECCLDSKDSQI------------------FCGSSDGKIYKWQLVDSSQISTLIH 292
I +S S I GS D I W + + TL+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 293 SVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
V + H K I+S + +++W
Sbjct: 246 H--DNWVRGVLFHSGGKFILSCADDKTLRVW 274
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 82.1 bits (201), Expect = 3e-18
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE--VNDA 61
C QT + I A+ F +G+ T D +L++ + L TY +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ + + +G D + +W+ H ++V+C+ +D V +GS D+ +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 122 MMWD 125
+W+
Sbjct: 337 KIWN 340
Score = 76.3 bits (186), Expect = 3e-16
Identities = 54/295 (18%), Positives = 94/295 (31%), Gaps = 21/295 (7%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 107 EDSSVVISGSQDNTVMMWDVKS-----------RSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+ V G DN ++++K+ H C D SS
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE-------DYGQ 208
+++ Q +T V++ + TR + AC + KLW E +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268
I CF + T S D RLFD + L Y +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
G D W + + + L + V+ L + + ++ +K+W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 76.3 bits (186), Expect = 3e-16
Identities = 40/298 (13%), Positives = 86/298 (28%), Gaps = 28/298 (9%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+T+ I A+ + D ++ D K+ +W+ Y + + V A
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 65 CDSSQIASGASDKSVILWEVTT------------GQPVRRWREHASKVTCVKFNEDSSVV 112
+ +A G D ++ + T G + + +
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172
+ + + L G+ D W + + T +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TG 224
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNV----------KLWTAEEDYGQEPIVDACFTRDCQC 222
++ +N++C P + + +L T D I F++ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKW 279
+L D ++D + GH + R+ C + D + GS D + W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDN---RVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 71.3 bits (173), Expect = 1e-14
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
T G + ++ D ++ D KLW+ + +T+ GH ++N
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 61 ATAACDSSQIASGASDKSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ + A+G+ D + L +T V F++ ++++G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 119 NTVMMWDVKSRS--------HHPIQCCLDSKDSQ-IFCGSSDGKIYKW 157
+WD + + C + D + GS D + W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 67.1 bits (162), Expect = 4e-13
Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 21/258 (8%)
Query: 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLD 139
+ R R H +K+ + + DS +++S SQD +++WD + + + C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199
+ I + + + + + L +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 200 W----------TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249
T ++ D + ++ + D +L+D G + + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 250 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309
+S I C + GS D + L ++ T H + S+ + +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 310 HIMSACGNN-VKLWTAEE 326
+++ + +W A +
Sbjct: 284 LLLAGYDDFNCNVWDALK 301
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 80.2 bits (196), Expect = 2e-17
Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 57/324 (17%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY------------------GGHA 55
+ V+F+ DG Y L G +K +++ L+
Sbjct: 63 SVVCCVKFSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 121
Query: 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG 115
+ + D +A+GA D+ + +W++ + V + H + + + ++SG
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181
Query: 116 SQDNTVMMWDVKSRSHHPIQCCLD---------SKDSQIFCGSSDGKIYKWQLVDSSQIS 166
S D TV +WD+++ D I GS D + W +
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 167 TLIHSVG-----KAVVNSLCSHPTRKHIMSACGNN--------------------VKLWT 201
L K V S+ + ++S +
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 301
Query: 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIE 257
++ ++ T++ + IL+ S D + +DK +G L +GH++
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
Query: 258 CCLDSKDSQIFCGSSDGKIYKWQL 281
L + + GS D K W+
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKY 385
Score = 71.8 bits (174), Expect = 2e-14
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWN------------PYRNLLLKTYGGHAHEVND 60
+ ++ +V F DG ++ D+ +KLWN P TY GH V
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV------KFNEDSSVVIS 114
+ I SG+ D+ V+ W+ +G P+ + H + V V + +V +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 115 GSQDNTVMMWDVK 127
GS D +W K
Sbjct: 374 GSGDCKARIWKYK 386
Score = 53.3 bits (126), Expect = 2e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV-- 58
TC T + + +V + Y L+ D+ + W+ L GH + V
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 59 ----NDATAACDSSQIASGASDKSVILWEV 84
N ++ + + A+G+ D +W+
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 52.1 bits (123), Expect = 4e-08
Identities = 48/308 (15%), Positives = 102/308 (33%), Gaps = 58/308 (18%)
Query: 70 IASGASDKSVILWEVTTGQPVR----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
++ IL+ + + + +H S V CVKF+ D + +G + T ++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 126 VKSRS--------------------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159
V S I+ S D + ++ ++ +
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL-------WTAEEDYGQEPIV 212
+++ +I ++ + + + K + + V++ +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 213 DACFTRDCQCILTCSTDECLRLFDKATGEL-------LEEYKGHKSGDFRIECCLDSKDS 265
A D + I S D +R++D TG L E GHK + + D +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-- 267
Query: 266 QIFCGSSDGKIYKWQLVDSSQIST----------LIHSVGKAVVNSLCSHPTRKHIMSAC 315
+ GS D + W L +++ S + + K V S+ + ++I+S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 316 GNN-VKLW 322
+ V W
Sbjct: 328 KDRGVLFW 335
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 76.0 bits (185), Expect = 4e-16
Identities = 49/290 (16%), Positives = 93/290 (32%), Gaps = 12/290 (4%)
Query: 40 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK 99
W K GH V ++I SG+ D ++ +W TG+ +R H
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQC-----CLDSKDSQIFCGSSDGKI 154
V + ++ + S + V + H C+ + ++ GS D +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM--SACGNNVKLWTAEEDYGQEPIV 212
W + + L+ V + + T
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 213 DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272
D +++ S D +R++D TG + GH+S + ++ KD+ + G++
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNA 235
Query: 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
D + W + + TL + I S+ VKLW
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Score = 62.5 bits (150), Expect = 1e-11
Identities = 50/333 (15%), Positives = 106/333 (31%), Gaps = 26/333 (7%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E + + + G+ ++ D +K+W+ L+T GH V
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-- 61
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ + L + T + V+SGS+D T+
Sbjct: 62 --SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 122 MMWDVKSRSHHPIQC-------CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174
+WD+++ + C+ ++ G+ D + W + + TL
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--- 176
Query: 175 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-----YGQEPIVDACFTRDCQCILTCST 228
H++S ++++W E + + +++ +
Sbjct: 177 -TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 235
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
D ++++D TG+ L+ +G + C +K+ I S DG + W L I
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEFIR 294
Query: 289 TLIHSVGK---AVVNSLCSHPTRKHIMSACGNN 318
L+ VV + + T+ N
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 66.8 bits (161), Expect = 6e-13
Identities = 34/317 (10%), Positives = 82/317 (25%), Gaps = 12/317 (3%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIAS 72
I +N D + C ++ ++ ++ N + + H +V A DS++I +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 73 GASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
+D++ +W + CV++ + GS + + + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190
+ + S I S V + M
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
+ + CF+ + + S D + L D +
Sbjct: 189 PFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADA---DKKMAVATLA 240
Query: 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310
S + +S + D + ++ + + +S R+
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 311 IMSACGNNVKLWTAEED 327
+ +A
Sbjct: 301 FQNLDKKASSEGSAAAG 317
Score = 58.7 bits (140), Expect = 3e-10
Identities = 39/280 (13%), Positives = 88/280 (31%), Gaps = 11/280 (3%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNEDSSV 111
++ D +QIA ++ V ++E + + V +EH +VT V + DS+
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 112 VISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL-IH 170
+++ D +W +K R+ P L + + + S IS
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 171 SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230
V P R ++S + + A + + + + ++ + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290
F + E C + S++ S D + ++TL
Sbjct: 186 SKMPFGELMFESSSSCGWVHG------VCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 291 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 330
+ ++ + + L+T + G+
Sbjct: 240 ASETLP--LLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 277
Score = 51.8 bits (122), Expect = 4e-08
Identities = 37/332 (11%), Positives = 92/332 (27%), Gaps = 20/332 (6%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
++ V + G + V + D + +TCG+D+ +W T
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 62 TAACDSSQ--IASGASDKSVILWEVTTGQPVRRWREHASK----VTCVKFNEDSSVVISG 115
++ A G+ + + + + V + ++ +S ++ +G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 116 SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175
S D ++ + F + +SS +H V +
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG---------ELMFESSSSCGWVHGVCFS 210
Query: 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235
S + + + + K+ A P++ F + ++ D LF
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLF 269
Query: 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 295
+ + G + + + + D K + +H
Sbjct: 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERF--QNLDKKASSEGSAAAGAGLDSLHKNS 327
Query: 296 KAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 325
+ ++ L + G + +W
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Score = 41.4 bits (95), Expect = 9e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIECC 259
A + EPI + +D I C + + +++K+ + E K H +
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV--D 58
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315
++I +D Y W L + TL+ + P K
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114
Score = 39.1 bits (89), Expect = 5e-04
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 13/171 (7%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ G + V F+ +GS D + L + + + + T +
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF----------NEDSS 110
T +SS +A+G D +L+ + + N D
Sbjct: 249 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 111 VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD--SQIFCGSSDGKIYKWQL 159
GS + + S I K SQ DG + W +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
Score = 36.0 bits (81), Expect = 0.005
Identities = 26/241 (10%), Positives = 61/241 (25%), Gaps = 25/241 (10%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+++ + R + L+ V+
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ + S++A + D +V L + V + V F +SS+V +G D
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF 265
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
+++ S + K + G
Sbjct: 266 PVLFTYDSAAG------------------------KLSFGGRLDVPKQSSQRGLTARERF 301
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
+ + + L + ++ + V + C T D + ++D +
Sbjct: 302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
Query: 241 E 241
E
Sbjct: 362 E 362
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.9 bits (151), Expect = 8e-12
Identities = 32/326 (9%), Positives = 77/326 (23%), Gaps = 23/326 (7%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
+ DG + R+ H V T + + + +G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-G 70
Query: 76 DKSVILWEVTTGQPVR-----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
V +W+++ + + K D +I G + +T+ +WD+ + +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190
S + S + I+ V I
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-------------TCSTDECLRLFDK 237
+ ++ + + + +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297
++Y+ H + D + W+ + I S +
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---S 307
Query: 298 VVNSLCSHPTRKHIMSACGNN-VKLW 322
V S K+I++ G+ ++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 62.5 bits (150), Expect = 1e-11
Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 24/290 (8%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDS 67
+ AV + + T G +K+W+ + + + D
Sbjct: 51 GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHA--------SKVTCVKFNEDSSVVISGSQDN 119
+ G ++ +W++ P + + + K + + +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 120 TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
V+ H + + G + D + L + + S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 180 LCSHPTRKHIMSACGNNVKLWTA-------EEDYGQEPIVDACFTRDCQCILTCSTDECL 232
L PT + + ++ + + ++ F + ++ D L
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
+ G + + K S + C + D I GS D K ++++
Sbjct: 290 NAWRTPYGASIFQSKESSS---VLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 57.9 bits (138), Expect = 4e-10
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ I ++ + G + +++ + + H V
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLS 270
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A S D + W G + + + +S V + D +++GS D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 121 VMMWDV 126
+++V
Sbjct: 330 ATVYEV 335
Score = 30.5 bits (67), Expect = 0.25
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 264 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323
Q D I + QI+TL H VV ++ +H+ + VK+W
Sbjct: 22 QMQPVPFPPDALIGPGIPRHARQINTLNHG---EVVCAVTISNPTRHVYTGGKGCVKVWD 78
Query: 324 AEEDYGQAGLSSL 336
++ +S L
Sbjct: 79 ISHPGNKSPVSQL 91
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 61.5 bits (147), Expect = 2e-11
Identities = 25/295 (8%), Positives = 71/295 (24%), Gaps = 17/295 (5%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
+ Q AI A+ + DG + ++ I W+ + + + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNT 120
+ + + D + + +S+ + + D + ++ +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 121 VMMWDVKS--------------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166
+ K + S + + + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC 226
T + + S N T + + ++ D + T
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281
S D + +++ + + ++ I D I W +
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 58.8 bits (140), Expect = 2e-10
Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 18/293 (6%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKF 105
+ + GH + +++ D + S ++ + W+++TG R + + HA+ +T +K
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 106 NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165
+ D+ + + + + SQ + I
Sbjct: 64 TSKGDLFTVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 166 STL---------------IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
+ ++ K + + E
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
A + T + + + EL + ++ G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 271 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
S D + W + S +I + I+SA ++ +K W
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Score = 42.7 bits (98), Expect = 3e-05
Identities = 29/250 (11%), Positives = 64/250 (25%), Gaps = 14/250 (5%)
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCC 137
G + H +T + + D + S + + WD+ + I
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 197
+ +F S D + S S+ + + + I A
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 198 KLWTAE----EDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 253
+ E + D Q + D + ++ + + E +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313
++ + S I + T + A V + P + +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 314 ACGNN-VKLW 322
+N V +W
Sbjct: 242 GSLDNSVIVW 251
Score = 35.7 bits (80), Expect = 0.006
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 27 YCLTCGSDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
T D + +WN + + G HA ++ + + I S D ++ W V
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Query: 85 T 85
Sbjct: 298 P 298
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 61.4 bits (147), Expect = 3e-11
Identities = 46/292 (15%), Positives = 80/292 (27%), Gaps = 20/292 (6%)
Query: 5 CVQTIDCKQGAIRAVR-FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN---- 59
+Q I C+ + V D ++ D IK+W+ + GH V
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 60 --DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 117
S + + + V ++D S+ +
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 118 DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
T + H +D D I S D I W + TL G
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRG 180
Query: 178 NSLCSHPTRKHIMSACGNNVKLWTAEED-----YGQEPIVDACFTRDCQCILTCSTDECL 232
+ + R + + N ++LW E + C D + I++ + D +
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 233 RLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKW 279
+++D G L + QI S D I W
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
Score = 57.2 bits (136), Expect = 5e-10
Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 25/294 (8%)
Query: 48 LKTYGGHAHEVNDATA-ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
L+ + D +I SG D ++ +W+ T + R H V C++++
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 107 EDSSVVISGSQDNTVMM-----WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
E + S V H L + + S D I W +
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE-----EDYGQEPIVDACF 216
+ I+ VG ++ + + ++ +K+W AC
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184
Query: 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276
+ +++ S+D +RL+D G L +GH + C+ + +I G+ DGKI
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSGAYDGKI 240
Query: 277 YKWQLVDSSQISTLIHSVGKAV-------VNSLCSHPTRKHIMSACG-NNVKLW 322
W LV + ++ V L I+S+ + + +W
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292
Score = 52.9 bits (125), Expect = 2e-08
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
V+T++ + I +++ ++ SD I+LW+ L+ GH V
Sbjct: 169 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR- 225
Query: 64 ACDSSQIASGASDKSVILWEVTTG---------QPVRRWREHASKVTCVKFNEDSSVVIS 114
D+ +I SGA D + +W++ +R EH+ +V ++F D ++S
Sbjct: 226 -FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 282
Query: 115 GSQDNTVMMWD 125
S D+T+++WD
Sbjct: 283 SSHDDTILIWD 293
Score = 44.5 bits (103), Expect = 8e-06
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 39/218 (17%)
Query: 27 YCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
+TC D+ I +W+ + H D I S + D+++ +W +
Sbjct: 107 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 166
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCL 138
T + VR H + C+++ + +V+SGS DNT+ +WD++ + H + C+
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198
+ +I G+ DGKI W LV + G + +L H
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEH--------------- 266
Query: 199 LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
+ F D I++ S D+ + ++D
Sbjct: 267 ---------SGRVFRLQF--DEFQIVSSSHDDTILIWD 293
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 59.5 bits (142), Expect = 1e-10
Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 28/286 (9%)
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+I + SV V + + EH+ + T K + SG V +WD
Sbjct: 28 AGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 126 VKSRSHHPIQ--------------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165
+H + + F + Q
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225
+ K + + ++ + + + + + D +
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 226 CSTDECLRLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280
D + L++ G ++ ++I S+D I W
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
Query: 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAE 325
+ T+ + L T++ ++S N + E
Sbjct: 267 VATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 45.3 bits (105), Expect = 5e-06
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISGSQDNTVMM 123
D ++IAS ++DK++ +W V T + + + + ++S S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 124 WD 125
+
Sbjct: 308 VN 309
Score = 39.5 bits (90), Expect = 4e-04
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDA 61
G++ + ++ DG+ + +DK IK+WN + KT G E
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287
Query: 62 TAACDSSQIASGASDKSVILWE 83
+ S +++ +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309
Score = 27.2 bits (58), Expect = 3.0
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 4 TCVQTIDC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP 42
+TI + + + ++ ++ I NP
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 58.8 bits (140), Expect = 3e-10
Identities = 30/306 (9%), Positives = 70/306 (22%), Gaps = 31/306 (10%)
Query: 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109
T GH V + + + +GA DK + +++ + + + H V +K+
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF----------CGSSDGKIYKWQL 159
+V + + K H + + GS D ++ W+L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 160 VDSSQISTLIHSVGKAVVNSLCSHPTRK--------------------HIMSACGNNVKL 199
S + +V + + N + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259
W + + D E
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 319
+ S + D++ S + + + ++S N
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305
Query: 320 KLWTAE 325
++
Sbjct: 306 NIYNLR 311
Score = 56.8 bits (135), Expect = 1e-09
Identities = 38/334 (11%), Positives = 80/334 (23%), Gaps = 34/334 (10%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
+ +Y +T DK I++++ L GH V A + SG++D++V
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVR 77
Query: 81 LWEVTT--GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------- 130
+W++ V + + ++ +++GS+DNT+ +W + S
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 131 ----------------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168
H + + + GS D + W + + L
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197
Query: 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228
+ R S + +
Sbjct: 198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV 257
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
+ K I S+ + + L +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 317
Query: 289 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
I + S+ L
Sbjct: 318 ANILK-DADQIWSVNFKGKTLVAAVEKDGQSFLE 350
Score = 39.5 bits (90), Expect = 4e-04
Identities = 28/281 (9%), Positives = 68/281 (24%), Gaps = 12/281 (4%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
T V + + Y +T D + +W + + +G
Sbjct: 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
++ V T S + + + +
Sbjct: 144 FHTPEENPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 200
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
H +C S D+ I + + L + + L+ K +V++
Sbjct: 201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAA 260
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R + + IL ++ +++ +G
Sbjct: 261 ADGSIRGWDANDYSRKFSYH-------HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 313
Query: 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281
+L+ + +I + + DG+ + L
Sbjct: 314 KLVHANILKDAD--QIWSVNFKGKTLVAAVEKDGQSFLEIL 352
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 58.4 bits (139), Expect = 3e-10
Identities = 29/309 (9%), Positives = 78/309 (25%), Gaps = 40/309 (12%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSD----KKIKLWNPYRNLLLKTYGGHAHEVNDAT--AACD 66
+ + ++ + + + + +++ G + V
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
S + SG VI+W T + + V S + ++ +
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST------------------- 167
+ I + ++ S + + T
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196
Query: 168 --------------LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213
+ S + + ++ + +
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256
Query: 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE-CCLDSKDSQIFCGSS 272
A D Q T D +R++D T + ++++ K + + + + +I S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316
Query: 273 DGKIYKWQL 281
DG + ++L
Sbjct: 317 DGTLNFYEL 325
Score = 46.1 bits (107), Expect = 3e-06
Identities = 10/87 (11%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
++ +D T G+D I++W+ + ++ + ++ +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 61 ATAAC---DSSQIASGASDKSVILWEV 84
+ +I S + D ++ +E+
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYEL 325
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 58.3 bits (139), Expect = 4e-10
Identities = 38/363 (10%), Positives = 86/363 (23%), Gaps = 50/363 (13%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEV- 58
I +V S+ ++C D +K+W+ N K+Y H+
Sbjct: 5 ATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 59 --------NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS- 109
A + +A+ + ++ + +T ++ + + S
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 110 --------------SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ T +W + L+ + G+ + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC 215
Q S IS G + + I
Sbjct: 183 PSQFATSVDIS----ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 216 FTRDCQCILTCSTD--------------ECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261
F+ + E + T + + +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLI--HSVGKAVVNSLCSHPTRKHIMSACGNNV 319
+ DGK+ W + +I+TL + + L + +V
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 320 KLW 322
K
Sbjct: 359 KFL 361
Score = 40.6 bits (93), Expect = 2e-04
Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 26/174 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY----------------R 44
+ ++ +IR+V+F+ GS Y
Sbjct: 219 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 278
Query: 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV---- 100
+ H+ V + + S D + W+V T + + H +
Sbjct: 279 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
Query: 101 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154
+ +E + ++DVK + + C D I
Sbjct: 339 DILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 386
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 56.7 bits (135), Expect = 1e-09
Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 3/112 (2%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 77
RF D T + + + + G +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272
Query: 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129
+ +++ + ++ CV F++ + G N + +++ +
Sbjct: 273 RLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Score = 46.3 bits (108), Expect = 2e-06
Identities = 21/240 (8%), Positives = 54/240 (22%), Gaps = 16/240 (6%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
+ A ++++++ L K + + +
Sbjct: 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVA 161
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135
+ +V TG+ + S + M +R Q
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 195
L + + T + + + P + + N
Sbjct: 222 D--------PATADLLYGYLSVDL-KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272
Query: 196 NVKLWTAEED------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249
+ + ++ F + + T L +F+ T E ++ K
Sbjct: 273 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
Score = 41.3 bits (95), Expect = 1e-04
Identities = 7/89 (7%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
Q + + ++ + ++ + L+K H
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWR 94
++ G + + ++ T + V+ +
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
Score = 40.9 bits (94), Expect = 1e-04
Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV-RRWREHASKVTCVKFNEDSS 110
+ A D A+ + ++ TG+ + + + +
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 111 VVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162
I G N + +D+K R H D K +++ G + + +
Sbjct: 265 NQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Query: 163 SQISTLIHSVGKAVVNSL 180
++ + G +
Sbjct: 324 EKVKNIKLPGGDMSTTTP 341
Score = 33.6 bits (75), Expect = 0.028
Identities = 18/231 (7%), Positives = 45/231 (19%), Gaps = 34/231 (14%)
Query: 103 VKFNEDSSVVISGSQDNTVMMWDVKSRS----------HHPIQCCLDSKDSQIF-CGSSD 151
+I + N + + DV S + P + + + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPI 211
G IY L S + + + +++ +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPG------EVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS 271
L +F A G + + ++ + D ++
Sbjct: 116 HY------------VVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGSLYVAG 162
Query: 272 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
D + L + +
Sbjct: 163 PDIYK--MDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSM 209
Score = 30.5 bits (67), Expect = 0.32
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
V F+ G G+ + ++NP +K +++ T
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQV 343
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 54.5 bits (129), Expect = 6e-09
Identities = 30/326 (9%), Positives = 90/326 (27%), Gaps = 48/326 (14%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN---PYRNLLLKTYGGHAHEVNDA 61
VQ + I ++ S L D + ++ +N+ L + H +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
++ + + IL G P + + + +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 122 MMWDVKSRS-----------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164
++ + R+ +D+ S++ G ++ ++ ++L
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 165 ISTLIHSVG--KAVVNSLCSHPTRKHIMSACGNN-VKLW--------------------- 200
+ I G + + ++ + + V +
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242
Query: 201 -TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259
++ P+ F+ + + T +D + ++ T + ++ +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED---SVVK 299
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSS 285
+ D+ + +SD +D +
Sbjct: 300 IACSDNILCLATSDDTFKTNAAIDQT 325
Score = 45.6 bits (106), Expect = 4e-06
Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 42/280 (15%)
Query: 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------HHPIQC 136
Q V+ + ++ +K S+++ S D ++ ++ ++ HP+ C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 137 CLDSKDSQ--IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194
C ++ I+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 195 NNVKLWTAEED-------------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241
+++ + + ++ + ++ F E
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 242 LLEEYKGHKSGDFRIECCLDSKDSQ--IFCGSSDGKIYKWQLVDSSQISTLI-------- 291
++I Q C S DG++ D
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 292 -----HSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAE 325
+ VNS+ P K + +A + + W +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281
Score = 41.8 bits (96), Expect = 8e-05
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ + ++ F+ + T GSD I WN +K + +E +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297
Query: 61 ATAACDSSQIASGASDKSVILWEVT 85
AC + + SD +
Sbjct: 298 VKIACSDNILCLATSDDTFKTNAAI 322
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 51.1 bits (120), Expect = 6e-08
Identities = 34/291 (11%), Positives = 92/291 (31%), Gaps = 24/291 (8%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
+LKT GH + A + + SG+ D ++ W ++ ++H++ + + +
Sbjct: 5 VLKTISGHNKGIT----ALTVNPLISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNS 55
Query: 107 EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY-----KWQLVD 161
+ D + K + + D ++D + ++
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ 221
S ++++ +V + I +++++ + + +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 222 CILTCSTDECLRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272
I + L+D + E + + + ++ + GS
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323
D I+ + + +I +++ K VN+L + S +K W
Sbjct: 236 DTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPSTLVSSGADACIKRWN 285
Score = 47.3 bits (110), Expect = 1e-06
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV-T 85
S + +R + E + +A+G+ D ++ ++ V
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ ++ H V + + S++V S D + W+V
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNV 286
Score = 42.6 bits (98), Expect = 3e-05
Identities = 32/298 (10%), Positives = 93/298 (31%), Gaps = 35/298 (11%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
++TI I A+ + ++ D +I W+ + H++ +
Sbjct: 5 VLKTISGHNKGITALTV----NPLISGSYDGRIMEWS-----SSSMHQDHSNLIVSL-DN 54
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
+ + +S + D ++ + +T + + + ++ + +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV--LTNDDDLLILQSFTGD 112
Query: 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184
+KS + + + + G +G + + ++S + + +A + + P
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172
Query: 185 TRKHIMSACGNNVKLWTAEEDYGQEPIVD-------------------ACFTRDCQCILT 225
+ +I + L + + + + T
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 226 CSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
S D + ++ ++++ HK G + L S + +D I +W +V
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDG---VNNLLWETPSTLVSSGADACIKRWNVV 287
Score = 38.8 bits (88), Expect = 5e-04
Identities = 28/245 (11%), Positives = 62/245 (25%), Gaps = 13/245 (5%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---HPIQCCLDSKD 142
+ ++ H +T + + +ISGS D +M W S + I +SK
Sbjct: 2 HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202
+ S D + + S + + ++ +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK-- 115
Query: 203 EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262
A + +++F + E+ + K S
Sbjct: 116 --SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISIS 171
Query: 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
+ S ++ T + + +N++ P K +
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231
Query: 323 TAEED 327
T D
Sbjct: 232 TGSLD 236
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 49.1 bits (115), Expect = 3e-07
Identities = 10/112 (8%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 20 RFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
+ G Y L + + + ++ + ++
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
++ ++V T + E + +T ++ + D V+ D + + ++
Sbjct: 300 LLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Score = 44.9 bits (104), Expect = 7e-06
Identities = 22/187 (11%), Positives = 46/187 (24%), Gaps = 19/187 (10%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-------YRNLLLKTYGG 53
ME + + A F+ D +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILW-------EVTTGQPVRRWREHASKVTCVKFN 106
N S +G D + + + + + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 107 EDSSVVISGSQDNTVMMWDVKSR-----SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
E ++ + ++ +DVK+R ++ L + + DGKIY + L
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 162 SSQISTL 168
T+
Sbjct: 346 PEDERTV 352
Score = 43.7 bits (101), Expect = 2e-05
Identities = 30/320 (9%), Positives = 68/320 (21%), Gaps = 49/320 (15%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ 69
+ IR VR D G+ + +++ R + + + V +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 70 IAS----------GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 119
+ E + + + + G
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 120 TVMMWDVKSRSHHP--------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171
+ ++D++ R D+ ++ S V + ++
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 172 VG-----KAVVNSLCSHPTRKHIMSACGNNVKLWT---------------AEEDYGQEPI 211
N P + + ++ +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCG 270
L +D T ++ E S D + +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRL-------SADRKTVMVR 332
Query: 271 SSDGKIYKWQLVDSSQISTL 290
DGKIY + L T+
Sbjct: 333 KDDGKIYTFPLEKPEDERTV 352
Score = 42.2 bits (97), Expect = 5e-05
Identities = 14/245 (5%), Positives = 50/245 (20%), Gaps = 26/245 (10%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ + + I +++ +
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYA 183
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
DS + + + + + + + + ++ S +
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
+D+ +D D ++ + +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI---------------------YSVP 282
Query: 181 CSHPTRKHIMSACGNN-VKLW---TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
+ A + + T + + + D + D + ++ D + F
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
Query: 237 KATGE 241
E
Sbjct: 343 LEKPE 347
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 49.0 bits (115), Expect = 3e-07
Identities = 12/124 (9%), Positives = 33/124 (26%), Gaps = 2/124 (1%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
Q A D + + + +V + A
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAV 248
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ ++ + + + +++ ++R V + D S V G + +D
Sbjct: 249 NPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307
Query: 126 VKSR 129
++
Sbjct: 308 AETL 311
Score = 47.5 bits (111), Expect = 1e-06
Identities = 23/312 (7%), Positives = 67/312 (21%), Gaps = 62/312 (19%)
Query: 70 IASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSS-VVISGSQDNTVMMWDV 126
I + A +++ + + + + ++ +++ D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 127 KSR-----------------------SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163
+ S + ++ + + + L D+
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 164 QISTLIHSVGKAVVNSLCSHPTRKHIMS-----------------------------ACG 194
+S + L + A
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 195 NNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254
+ + +W E G +D + L D TGE+
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMD 240
Query: 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
++ + + + L ++ I + S+ +
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWLG 297
Query: 315 C-GNNVKLWTAE 325
++ + AE
Sbjct: 298 GALGDLAAYDAE 309
Score = 42.5 bits (98), Expect = 5e-05
Identities = 25/297 (8%), Positives = 56/297 (18%), Gaps = 57/297 (19%)
Query: 14 GAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-----DS 67
G + + + + L E + D
Sbjct: 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93
Query: 68 SQIASGASDKSVILWEVTTGQP-----------VRRWREHASKVTCVKFNEDSSVVISGS 116
+A S + L R+ E ++T + + D S +
Sbjct: 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153
Query: 117 QDNTVMMWD------------------------------VKSRSHHPIQCCLDSKDSQIF 146
+D VM + S
Sbjct: 154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213
Query: 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE-- 204
+ + L + + + + K N ++ + E+
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFS--TAVNPAKTRAFGAYNVLESFDLEKNA 271
Query: 205 -----DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 256
+ D + L +D T E + + +
Sbjct: 272 SIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
Score = 38.2 bits (87), Expect = 0.001
Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGH 54
+ T+D + G + + + + ++ ++ +N +K
Sbjct: 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-L 278
Query: 55 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94
H + D S + G + + ++ T + +
Sbjct: 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
Score = 29.8 bits (65), Expect = 0.54
Identities = 5/62 (8%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
++ + + +V + DGS G+ + ++ +
Sbjct: 270 NASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
Query: 63 AA 64
+
Sbjct: 329 SV 330
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 47.7 bits (112), Expect = 9e-07
Identities = 18/164 (10%), Positives = 38/164 (23%), Gaps = 19/164 (11%)
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS------VVIS 114
A S+ + G V + + TT A V +++ +
Sbjct: 32 VVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYV 91
Query: 115 GSQDNTVMMWDVKSRS------HHPIQCCLDSKDSQ--IFCGSSDGK-IYKWQLVDSSQI 165
+ + + + S C L GK + + +
Sbjct: 92 ANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEA 151
Query: 166 STLIHSVGKAVVNSLCSHP----TRKHIMSACGNNVKLWTAEED 205
+ V ++ + G NV+ D
Sbjct: 152 KRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGD 195
Score = 30.0 bits (66), Expect = 0.42
Identities = 5/79 (6%), Positives = 18/79 (22%), Gaps = 6/79 (7%)
Query: 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84
+ K+ ++ + A+ V+ +
Sbjct: 249 TQVWVYDLKSKQRVARWDLAQQKVEPLVSIQ-----VSEDDKPLFYGLTATSDLVV-MDA 302
Query: 85 TTGQPVRRWREHASKVTCV 103
TG ++ + + +
Sbjct: 303 RTGALQHVEKQIGNTSSLL 321
Score = 28.8 bits (63), Expect = 0.84
Identities = 10/109 (9%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ----IFCGSSDGKIYKWQLV 282
+ + + + D T + E + ++ S ++ + +
Sbjct: 45 TRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVID 104
Query: 283 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQA 331
S+ S L + C + L + G+
Sbjct: 105 AVSKKM---LSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKE 150
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 46.3 bits (108), Expect = 3e-06
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 25/145 (17%)
Query: 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDAT----- 62
+ I ++ + KI + L
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250
Query: 63 ---------------AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE 107
+ + + V++ + TG+ + ++ E ++ + ++
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQ 309
Query: 108 D--SSVVISGSQDNTVMMWDVKSRS 130
D + + D T+ + D +S
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGE 334
Score = 44.0 bits (102), Expect = 2e-05
Identities = 29/281 (10%), Positives = 69/281 (24%), Gaps = 27/281 (9%)
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-------- 112
A A+ S+IA G V +++ T P + V + +
Sbjct: 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121
Query: 113 -ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW----QLVDSSQIST 167
S V + D++ ++ + IF + D +
Sbjct: 122 FYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179
Query: 168 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS 227
V + S Y + + D + +
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAG----RLVWPTYTGKIHQIDLSSGDAKFLPAVE 235
Query: 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287
D ++ H++ D L + + ++ + ++
Sbjct: 236 ALTEAERADGWRPGGWQQVAYHRALDRI--YLLVDQRDEWRHKTASRFVVVLDAKTGERL 293
Query: 288 STLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAE 325
+ ++S+ K ++ A + + AE
Sbjct: 294 AKFEMGHE---IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
Score = 40.5 bits (93), Expect = 2e-04
Identities = 31/309 (10%), Positives = 72/309 (23%), Gaps = 62/309 (20%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGG 53
+ ID G + DGS+ + +++++P L
Sbjct: 39 RVIGMID--GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96
Query: 54 HAHEVNDA---------TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS------ 98
T + + +V + ++ R
Sbjct: 97 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156
Query: 99 -KVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPI----QCCLDSKDSQIFCGSSDG 152
T D S ++ + T + + K ++ + G
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216
Query: 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ---- 208
KI++ L + P ++ +++ + +
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276
Query: 209 -----------------------EPIVDACFTRDCQCIL--TCSTDECLRLFDKATGELL 243
I ++D + +L + D+ L + D +GE L
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
Query: 244 EEYKGHKSG 252
G
Sbjct: 337 RSVNQLGHG 345
Score = 40.2 bits (92), Expect = 3e-04
Identities = 11/110 (10%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
Q + + R + + + + + L + HE++
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDS 304
Query: 61 ATAACDSSQ--IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+ D A DK++ + + +G+ +R + + +
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 45.0 bits (105), Expect = 7e-06
Identities = 13/153 (8%), Positives = 39/153 (25%), Gaps = 18/153 (11%)
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--------NEDSSVV 112
A A+ ++ A G V +++ T P+ + V + ++
Sbjct: 80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL 139
Query: 113 ISGSQDNTVMMWDVKSR---SHHPIQCC---LDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166
+ V C + + GS + L + +
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199
Query: 167 TLIHS----VGKAVVNSLCSHPTRKHIMSACGN 195
++ + + ++ + + +
Sbjct: 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS 232
Score = 43.0 bits (100), Expect = 3e-05
Identities = 13/137 (9%), Positives = 30/137 (21%), Gaps = 22/137 (16%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
+ +A + N G S + G+ Q+ +
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271
Query: 74 ASDKSVI-------------------LWEVTTGQPVRRWREHASKVTCVKFNED--SSVV 112
+ I + GQ + + +D S
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330
Query: 113 ISGSQDNTVMMWDVKSR 129
+ + + ++D S
Sbjct: 331 ANSAGTEVLDIYDAASD 347
Score = 42.7 bits (99), Expect = 4e-05
Identities = 18/276 (6%), Positives = 60/276 (21%), Gaps = 46/276 (16%)
Query: 22 NVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT------AACDSSQ--IASG 73
+ + +++++P L + C SS +
Sbjct: 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142
Query: 74 ASDKSVILWEVTTGQPVRRWRE-------HASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ V + + + T + +S+ S V
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202
Query: 127 KSR---SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 183
++ + + + + + I + + + ++ +
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262
Query: 184 PTRKHIMSACGNNVKLWTAEEDYG--------------------------QEPIVDACFT 217
+++ N + ++
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA 322
Query: 218 RDCQCIL--TCSTDECLRLFDKATGELLEEYKGHKS 251
+D + E L ++D A+ + + K
Sbjct: 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 44.0 bits (103), Expect = 2e-05
Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 30/198 (15%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWN-----PYRNLLLKTYGGHAHEVNDATAACDSSQ 69
A+ R + G Y G D K+ + + P +K +
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 70 -IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVK 127
IA ++ + T +P + +++ + V I S + +VK
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187
GKI D + + T S + ++ + +
Sbjct: 183 ----------------------ETGKILLVDYTDLNNLKTTEISAER-FLHDGGLDGSHR 219
Query: 188 HIMSACGNNVKLWTAEED 205
+ ++A KL +
Sbjct: 220 YFITAANARNKLVVIDTK 237
Score = 37.5 bits (86), Expect = 0.002
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 131
+ L + +T + + V + + + +D V M D+ +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
Score = 36.3 bits (83), Expect = 0.005
Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 49/261 (18%)
Query: 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHP 133
W+V ++ ++ ++ + + D + +
Sbjct: 11 WKVH--VAPEDRPTQ----QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64
Query: 134 IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA---VVNSLCSHPTRKHIM 190
L + +F DGK+ L + +G + S K+ +
Sbjct: 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124
Query: 191 SAC--GNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 248
+ + E ++ T D Q
Sbjct: 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY------------------------- 159
Query: 249 HKSGDFRIECCLDSKDSQIFC--GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
+ R+ L S F GKI D + + T S + ++
Sbjct: 160 --HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER-FLHDGGLDG 216
Query: 307 TRKHIMSACGNNVKLWTAEED 327
+ ++ ++A KL +
Sbjct: 217 SHRYFITAANARNKLVVIDTK 237
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 42.6 bits (99), Expect = 4e-05
Identities = 14/155 (9%), Positives = 49/155 (31%), Gaps = 15/155 (9%)
Query: 72 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV---KS 128
+ + L + + + V+ + V + + ++ +D + M D+ +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95
Query: 129 RSHHPIQCCLDSKD-----------SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
I+ ++++ G+ + ++ + ++ + G V
Sbjct: 96 TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 155
Query: 178 NSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212
R + A + + ++ G+ +V
Sbjct: 156 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190
Score = 36.5 bits (83), Expect = 0.004
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 8/132 (6%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL-----LKTYGGHAHE 57
V+ ID A+ R + G Y L G D +I + + + +K
Sbjct: 52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110
Query: 58 VNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISG 115
+ + IA + + T +P + V ++ + V I
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170
Query: 116 SQDNTVMMWDVK 127
S ++ + +VK
Sbjct: 171 SHEHPEFIVNVK 182
Score = 31.5 bits (70), Expect = 0.17
Identities = 10/131 (7%), Positives = 31/131 (23%), Gaps = 13/131 (9%)
Query: 106 NEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKIYKW 157
+ + ++ + + D S+ + + + + D +I
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMI 88
Query: 158 -----QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212
+ ++I I + + + E ++ +
Sbjct: 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS 148
Query: 213 DACFTRDCQCI 223
T D Q
Sbjct: 149 TRGMTVDTQTY 159
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 39.1 bits (89), Expect = 5e-04
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 72 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS 130
+ + ++ + +VT+ + S + D + V ++ + N V + D + +
Sbjct: 7 ANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158
S
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNM 93
Score = 32.5 bits (72), Expect = 0.066
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 82 WEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSR 129
+ T + R + D V ++ S NTV + D +
Sbjct: 229 IDTGTNKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276
Score = 29.5 bits (64), Expect = 0.63
Identities = 22/266 (8%), Positives = 76/266 (28%), Gaps = 19/266 (7%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
TI + DG+ + + + + N ++ T + A
Sbjct: 23 KVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ + + ++ + + T+ + S + + + ++ + D TV
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 123 MWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174
+ + +++ P + ++++ + D ++ + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201
Query: 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP--------IVDACFTRDCQCIL-T 225
++ T+ ++ + + + + T D + +
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA 261
Query: 226 CSTDECLRLFDKATGELLEEYKGHKS 251
S + + D AT + K+
Sbjct: 262 LSFCNTVSVIDTATNTITATMAVGKN 287
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 29.5 bits (66), Expect = 0.54
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
K ++ + R + + + +G TV + +
Sbjct: 235 GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287
Score = 27.2 bits (60), Expect = 3.7
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 17 RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 76
R G++ T G K + + + + T+ IA+G
Sbjct: 221 RIAAAVKAGNF-KTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLS 279
Query: 77 KSVILWEVTTGQPV------RRWREHASKVTC-----VKFNEDSSVVISGSQDNTVMMWD 125
+V + + + R A F+ + + D+ V W+
Sbjct: 280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339
Query: 126 V 126
+
Sbjct: 340 I 340
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 27.8 bits (61), Expect = 0.77
Identities = 5/60 (8%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220
+ ++ + + + + + +++A + A D V + C
Sbjct: 21 ERRKLIRYVTAFNGELEDYMSDRVQ--FVITAQEWDPSFEEALMDNPSLAFVRPRWIYSC 78
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus
subtilis [TaxId: 1423]}
Length = 270
Score = 28.0 bits (62), Expect = 1.5
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 1/60 (1%)
Query: 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ-CCLDSKDSQIFC 147
P W + N + G + RS+HP K
Sbjct: 86 PEEWWDIIRESMPAYNSNYTPTTRGMGQIVELFRSYPEVKRSNHPNYSFVAWGKHKNKIL 145
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 26.7 bits (57), Expect = 3.4
Identities = 12/132 (9%), Positives = 32/132 (24%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
T V + G+ +T + ++ N +
Sbjct: 127 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG 186
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ + + V+ + + V + D +V ++ ++
Sbjct: 187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 246
Query: 121 VMMWDVKSRSHH 132
V+ HH
Sbjct: 247 VVKLTSLEHHHH 258
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 334
Score = 25.7 bits (56), Expect = 8.1
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 102 CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
F+E +S+ + S DNTV++ D+K + D ++ +
Sbjct: 133 LALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYC 192
Query: 162 SSQISTLI 169
S+ L+
Sbjct: 193 SAWKPLLL 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.415
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,257,099
Number of extensions: 54478
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 116
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)