BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17864
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQQ7|LIX1L_RAT LIX1-like protein OS=Rattus norvegicus GN=Lix1l PE=2 SV=1
Length = 338
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 117/163 (71%), Gaps = 20/163 (12%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFKV-------------SFKFQVNSG-----LN 42
MNSVFNEHPSRRI+D+FIEK+V+EA ASF +F+F + S L
Sbjct: 171 MNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLE 230
Query: 43 LDVTSTIGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQEN 102
T+ + L +WNGSLKAMRERQCSRQEV+AHYS+RALDDD+R QMALDW++REQ
Sbjct: 231 FQELMTVFQLL--HWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSV 288
Query: 103 PGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQIN 145
PGAL REL EREL+ ARLAG+ELRF KEKKDILMLA Q+
Sbjct: 289 PGALSRELASTERELDEARLAGKELRFHKEKKDILMLAAGQLG 331
>sp|Q8BQ89|LIX1L_MOUSE LIX1-like protein OS=Mus musculus GN=Lix1l PE=2 SV=2
Length = 337
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 117/163 (71%), Gaps = 20/163 (12%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFKV-------------SFKFQVNSG-----LN 42
MNSVFNEHPSRRI+D+FIEK+V+EA ASF +F+F + S L
Sbjct: 170 MNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLE 229
Query: 43 LDVTSTIGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQEN 102
T+ + L +WNGSLKAMRERQCSRQEV+AHYS+RALDDD+R QMALDW++REQ
Sbjct: 230 FQELMTVFQLL--HWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSV 287
Query: 103 PGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQIN 145
PGAL REL EREL+ ARLAG+ELRF KEKKDILMLA Q+
Sbjct: 288 PGALSRELASTERELDEARLAGKELRFHKEKKDILMLAAGQLG 330
>sp|Q8IVB5|LIX1L_HUMAN LIX1-like protein OS=Homo sapiens GN=LIX1L PE=2 SV=1
Length = 337
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/163 (60%), Positives = 117/163 (71%), Gaps = 20/163 (12%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFKV-------------SFKFQVNSG-----LN 42
MNSVFNEHPSRRI+D+FIEK+V+EA ASF +F+F + S L
Sbjct: 170 MNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLE 229
Query: 43 LDVTSTIGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQEN 102
T+ + L +WNGSLKAMRERQCSRQEV+AHYS+RALDDD+R QMALDW++REQ
Sbjct: 230 FQELMTVFQLL--HWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSV 287
Query: 103 PGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQIN 145
PGAL REL EREL+ ARLAG+ELRF KEKKDIL+LA Q+
Sbjct: 288 PGALSRELASTERELDEARLAGKELRFHKEKKDILVLAAGQLG 330
>sp|Q8UVV7|LIX1_CHICK Protein limb expression 1 OS=Gallus gallus GN=LIX1 PE=2 SV=1
Length = 281
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 16/167 (9%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFKVSFKFQVNSGLNLD-----VTSTIGKKLAT 55
+NS+FNE P RRI+ +FI ++V EA +S + K + ++ + S IGK +
Sbjct: 100 INSLFNELPCRRITKEFIMESVQEAVSSTSGNLKDADDPSTSIGAYHYMLESNIGKTMLE 159
Query: 56 Y-----------WNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQENPG 104
+ WNGSLKA+RE +CSRQEV+++YS +LD+ MRS MALDWI +EQE+PG
Sbjct: 160 FQELMIVFQLLHWNGSLKALRETKCSRQEVISYYSQCSLDEKMRSHMALDWIMKEQESPG 219
Query: 105 ALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQINGGSLSS 151
+ +EL A RELE R AG ELRF KEKK+IL LA +QI +++
Sbjct: 220 IISQELQVALRELEEVRKAGHELRFYKEKKEILSLALSQIYSDEVTT 266
>sp|Q6P566|LIX1_MOUSE Protein limb expression 1 homolog OS=Mus musculus GN=Lix1 PE=2 SV=1
Length = 282
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 105/162 (64%), Gaps = 20/162 (12%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFK---------------VSFKFQVNSG---LN 42
+NS+FNE PSRRI+ +FI ++V EA AS + + + N G L
Sbjct: 100 INSLFNELPSRRITKEFIMESVQEAVASTRGTLDDADDPSTSVGAYHYMLESNMGKTMLE 159
Query: 43 LDVTSTIGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQEN 102
TI + L +WNGSLKA+RE +CSRQEV+++YS +LD+ MRS MALDWI +E+E+
Sbjct: 160 FQELMTIFQLL--HWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERES 217
Query: 103 PGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI 144
PG L +EL A +LE AR AG+ELRF KEKK+IL LA TQI
Sbjct: 218 PGILSQELRAALGQLEEARKAGQELRFYKEKKEILSLALTQI 259
>sp|Q8N485|LIX1_HUMAN Protein limb expression 1 homolog OS=Homo sapiens GN=LIX1 PE=2 SV=2
Length = 282
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 20/162 (12%)
Query: 1 MNSVFNEHPSRRISDDFIEKAVAEARASFK---------------VSFKFQVNSG---LN 42
+NS+FNE PSRRI+ +FI ++V EA AS + + N G L
Sbjct: 100 INSLFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPSTSVGAYHYMLESNMGKTMLE 159
Query: 43 LDVTSTIGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQEN 102
TI + L +WNGSLKA+RE +CSRQEV+++YS +LD+ MRS MALDWI +E+++
Sbjct: 160 FQELMTIFQLL--HWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERDS 217
Query: 103 PGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI 144
PG + +EL A R+LE AR AG+ELRF KEKK+IL LA TQI
Sbjct: 218 PGIVSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQI 259
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1
SV=3
Length = 1819
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 60 SLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAREQENPGALGRELDQAERELET 119
SL+ ER+ +RQ +V HYS + + R Q AL I R + L R L + E+ ++
Sbjct: 747 SLEEELERK-ARQALVDHYSKLSAEAARREQKALWRIQRHRLESARL-RFLLEDEKHIQE 804
Query: 120 ARLAGRELRFPKEKKDILMLAHTQIN 145
A E P+E D+L+ H Q+
Sbjct: 805 MLKAVSEAHQPQEPPDVLLSVHPQVT 830
>sp|Q8IWC1|MA7D3_HUMAN MAP7 domain-containing protein 3 OS=Homo sapiens GN=MAP7D3 PE=1
SV=2
Length = 876
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 44 DVTSTIGKKLATYWNGSLKAMRERQ---CSRQEVVAHYSNRAL 83
D TS + K+ TY+NG LK R++ S QEVV+ S++ +
Sbjct: 793 DGTSQVRKEPKTYFNGDLKNFRQKSMKDTSIQEVVSRPSSKRM 835
>sp|O94254|MUG45_SCHPO Meiotically up-regulated gene 45 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug45 PE=1 SV=1
Length = 819
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 36 QVNSGLNLDVTST-IGKKLATYWNGSLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALD 94
++N +D T I KK NG+L+ R S + + ++ ALDD S D
Sbjct: 93 ELNHKTQVDFTEQLIPKKSLNKLNGTLRETMSRMPSFESISLSETSNALDD---SCFNDD 149
Query: 95 WIAREQENPGALGR-----ELDQAERELETARLAGRELRFPKEKKDILM 138
WI E E + R +D L T++ FP EK +
Sbjct: 150 WITIESEFSPPIDRGMTLEAMDSQNDTLFTSKQLNNGPNFPVEKATFFL 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,278,743
Number of Sequences: 539616
Number of extensions: 1778013
Number of successful extensions: 5354
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5335
Number of HSP's gapped (non-prelim): 25
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)