Query psy17864
Match_columns 151
No_of_seqs 34 out of 36
Neff 2.3
Searched_HMMs 29240
Date Sat Aug 17 00:58:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1j_A Hypothetical protein; s 43.2 11 0.00036 27.9 1.8 45 87-134 71-121 (125)
2 2qdq_A Talin-1; dimerisation d 40.3 20 0.00067 23.6 2.5 14 110-123 17-30 (50)
3 4dxt_A SUN domain-containing p 27.5 45 0.0015 25.9 3.1 20 11-30 2-21 (198)
4 2lw6_A Avrpiz-T protein; plant 25.5 10 0.00035 26.8 -0.8 13 122-134 22-34 (80)
5 2y6x_A PSB27, photosystem II 1 23.2 1.2E+02 0.0039 22.4 4.5 36 72-122 74-112 (113)
6 2kmf_A Photosystem II 11 kDa p 16.7 1.2E+02 0.004 22.4 3.3 33 72-119 78-113 (115)
7 2cos_A Serine/threonine protei 15.7 59 0.002 21.6 1.3 9 90-98 39-47 (54)
8 2elh_A CG11849-PA, LD40883P; s 15.0 2.4E+02 0.0082 17.9 4.2 17 9-25 19-35 (87)
9 2jy5_A Ubiquilin-1; UBA, alter 14.3 1.8E+02 0.006 17.9 3.2 38 56-97 11-49 (52)
10 2zyc_A Peptidoglycan hydrolase 13.8 66 0.0023 24.2 1.3 39 14-55 2-43 (170)
No 1
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=43.19 E-value=11 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHhHHhHHHhhhc-----CCCc-hHHHHHHHHHHHHHHHhccccccCchhhH
Q psy17864 87 MRSQMALDWIAREQE-----NPGA-LGRELDQAERELETARLAGRELRFPKEKK 134 (151)
Q Consensus 87 mRsqMALDWi~rE~~-----~pG~-i~~EL~~a~rELe~aR~aGrELRF~KEKk 134 (151)
+=-.|++.++.+=.+ -||- +| .=|..|++.|+..|..+||+.|+.
T Consensus 71 ~~~~~~~~lL~~CdevwV~~L~Gw~~S---~Gm~~Ei~~A~~~g~pV~~~~~~~ 121 (125)
T 1t1j_A 71 LWAPVDAFYMDHLEELIVLDLPGWRDS---AGIRREMEFFEAGGQRVSLWSEVE 121 (125)
T ss_dssp HHHHHHHHHHHHCSEEEECCCTTGGGC---HHHHHHHHHHHHTTCEEEEHHHHG
T ss_pred HHHHHHHHHHHhCCeeEEEecCCCCCC---hhHHHHHHHHHHCCCcEEEEcccc
Confidence 334566677776544 1352 23 346779999999999999998874
No 2
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=40.32 E-value=20 Score=23.64 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhc
Q psy17864 110 LDQAERELETARLA 123 (151)
Q Consensus 110 L~~a~rELe~aR~a 123 (151)
+-..|||||.||..
T Consensus 17 iLr~ErELEeAr~~ 30 (50)
T 2qdq_A 17 MLRKERELEEARKK 30 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44678999999864
No 3
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=27.50 E-value=45 Score=25.85 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q psy17864 11 RRISDDFIEKAVAEARASFK 30 (151)
Q Consensus 11 RrIt~eFi~ksv~eA~~s~~ 30 (151)
+-||+|.|.+.|++|+.-+.
T Consensus 2 ~~~~~~~v~~~v~~~l~~~~ 21 (198)
T 4dxt_A 2 PGVTEEQVHHIVKQALQRYS 21 (198)
T ss_dssp CSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999998763
No 4
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=25.52 E-value=10 Score=26.83 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=11.4
Q ss_pred hccccccCchhhH
Q psy17864 122 LAGRELRFPKEKK 134 (151)
Q Consensus 122 ~aGrELRF~KEKk 134 (151)
++|+-+|||.||-
T Consensus 22 kagwavrfyeekp 34 (80)
T 2lw6_A 22 KAGWAVRFYEEKP 34 (80)
T ss_dssp ETTSCEEEEECCT
T ss_pred ccceEEEeeecCC
Confidence 5899999999983
No 5
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=23.16 E-value=1.2e+02 Score=22.39 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=28.1
Q ss_pred HHHHHHhh---cccccHHHHHHhHHhHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy17864 72 QEVVAHYS---NRALDDDMRSQMALDWIAREQENPGALGRELDQAERELETARL 122 (151)
Q Consensus 72 QEViahYS---~r~LD~~mRsqMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~ 122 (151)
-.|-.||+ ++.|.++.+. .|.+||..||.-|...|.
T Consensus 74 NaLAGHY~s~g~~PlPek~k~---------------Rl~~el~~AE~al~Rg~~ 112 (113)
T 2y6x_A 74 NSLAGHYSSYPNRPLPEKLKA---------------RLEQEFKQVELALDREAK 112 (113)
T ss_dssp HHHHHHHHHCTTSCCCHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCHHHHH---------------HHHHHHHHHHHHHHhccc
Confidence 35778888 7889998875 378899999988877654
No 6
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=16.70 E-value=1.2e+02 Score=22.36 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=25.1
Q ss_pred HHHHHHhh---cccccHHHHHHhHHhHHHhhhcCCCchHHHHHHHHHHHHH
Q psy17864 72 QEVVAHYS---NRALDDDMRSQMALDWIAREQENPGALGRELDQAERELET 119 (151)
Q Consensus 72 QEViahYS---~r~LD~~mRsqMALDWi~rE~~~pG~i~~EL~~a~rELe~ 119 (151)
-.|-.||+ ++.|.++.+. .|.+||..||.-|..
T Consensus 78 NaLAGHY~s~g~~PlPek~k~---------------Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 78 NSLAGYYTSYGARPIPEKLKK---------------RLQLEFTQAERSIER 113 (115)
T ss_dssp HHHHHHHHHHSSCCCCHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCHHHHH---------------HHHHHHHHHHHHHHc
Confidence 35678888 7889998875 367899999876654
No 7
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=15.72 E-value=59 Score=21.62 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=7.7
Q ss_pred HhHHhHHHh
Q psy17864 90 QMALDWIAR 98 (151)
Q Consensus 90 qMALDWi~r 98 (151)
+-|+|||.|
T Consensus 39 e~AmewL~k 47 (54)
T 2cos_A 39 EAALEYISK 47 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 678999987
No 8
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=14.99 E-value=2.4e+02 Score=17.94 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy17864 9 PSRRISDDFIEKAVAEA 25 (151)
Q Consensus 9 PsRrIt~eFi~ksv~eA 25 (151)
+.++.|++|..++|...
T Consensus 19 ~~~~ys~e~k~~~v~~~ 35 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRI 35 (87)
T ss_dssp CCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 45689999999888754
No 9
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=14.30 E-value=1.8e+02 Score=17.88 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=29.1
Q ss_pred hhhchHHHHHhhhh-hHHHHHHHhhcccccHHHHHHhHHhHHH
Q psy17864 56 YWNGSLKAMRERQC-SRQEVVAHYSNRALDDDMRSQMALDWIA 97 (151)
Q Consensus 56 HWNGSLKAmREr~C-SRQEViahYS~r~LD~~mRsqMALDWi~ 97 (151)
.|...|..|++... +|+.++.-++...=| -+.|++|+-
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn----~e~A~e~L~ 49 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGD----INAAIERLL 49 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTC----HHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCC----HHHHHHHHH
Confidence 56778899999999 999988777665444 357889984
No 10
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=13.84 E-value=66 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhcccCcccccCcch---hhhhhccccchhHH
Q psy17864 14 SDDFIEKAVAEARASFKVSFKFQVNSGL---NLDVTSTIGKKLAT 55 (151)
Q Consensus 14 t~eFi~ksv~eA~~s~~g~~~d~~~t~i---~~mLesn~GktmLE 55 (151)
.++||.+....|+..-+- -.-..+| .-+|||.-|++.|-
T Consensus 2 ~~~FI~~~~~~A~~~~~~---~gI~~sv~lAQA~LESgwG~S~la 43 (170)
T 2zyc_A 2 AQAFVDATWPQAAKAAQS---LGVPAHFLVAQAALETGWGKSQIR 43 (170)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTSCHHHHHHHHHHHHTTTTTCCB
T ss_pred HHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHcCCCCCccc
Confidence 468999887777653210 0002333 56679999999983
Done!