Query psy17864
Match_columns 151
No_of_seqs 34 out of 36
Neff 2.3
Searched_HMMs 13730
Date Sat Aug 17 00:59:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a3 a.24.9.1 (A:253-371) V 76.5 1.7 0.00012 30.8 4.6 49 89-140 25-73 (119)
2 d1st6a4 a.24.9.1 (A:372-488) V 57.8 5.6 0.0004 28.0 4.1 48 89-140 17-64 (117)
3 d1st6a5 a.24.9.1 (A:489-646) V 43.2 13 0.00097 26.8 4.2 48 90-140 10-57 (158)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 25.2 34 0.0025 23.4 3.7 42 86-127 56-117 (129)
5 d2jn6a1 a.4.1.19 (A:1-89) Unch 23.4 40 0.0029 20.6 3.5 41 9-57 2-43 (89)
6 d2ifaa1 d.90.1.1 (A:2-200) Hyp 15.8 48 0.0035 21.8 2.7 19 8-26 17-35 (199)
7 d2cs0a1 d.93.1.1 (A:8-113) Hem 14.4 31 0.0023 21.5 1.3 17 68-84 76-92 (106)
8 d1ex0a4 d.3.1.4 (A:191-510) Tr 14.3 22 0.0016 28.6 0.7 27 41-67 72-112 (320)
9 d1g0da4 d.3.1.4 (A:141-461) Tr 14.2 23 0.0017 28.5 0.7 28 40-67 78-119 (321)
10 d1k0ma1 a.45.1.1 (A:92-240) Ch 13.1 38 0.0027 22.3 1.5 20 62-81 126-145 (149)
No 1
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=76.45 E-value=1.7 Score=30.76 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=38.4
Q ss_pred HHhHHhHHHhhhcCCCchHHHHHHHHHHHHHHHhccccccCchhhHHHHHHH
Q psy17864 89 SQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLA 140 (151)
Q Consensus 89 sqMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~aGrELRF~KEKkdIL~LA 140 (151)
-..|.+||....-.||-+++.= + ..=+++||+-|-.+ -++++.+||-++
T Consensus 25 leqA~~WL~dP~~~~gg~Ge~A-i-R~il~earkva~~~-~~~~r~~Il~~c 73 (119)
T d1st6a3 25 MNQAKGWLRDPNAPPGDAGEQA-I-RQILDEAGKAGELC-AGKERREILGTC 73 (119)
T ss_dssp HHHHHHHHHSTTSCSTTTTHHH-H-HHHHHHHHHHHHTT-CSTTHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCCccHHH-H-HHHHHHHHHHHHhC-CchhHHHHHHHH
Confidence 3569999999888899887642 1 22468888888776 699999999886
No 2
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=57.81 E-value=5.6 Score=27.99 Aligned_cols=48 Identities=27% Similarity=0.336 Sum_probs=35.5
Q ss_pred HHhHHhHHHhhhcCCCchHHHHHHHHHHHHHHHhccccccCchhhHHHHHHH
Q psy17864 89 SQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLA 140 (151)
Q Consensus 89 sqMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~aGrELRF~KEKkdIL~LA 140 (151)
-..|.+||..-. .+|+ + |-+.-+ =+++||+-|-.+=-|+++.+||-++
T Consensus 17 leqA~~WL~nP~-~gg~-G-e~AiR~-il~earkva~~~~~P~~r~~il~lc 64 (117)
T d1st6a4 17 IDAAQNWLADPN-GGSE-G-EEHIRG-IMSEARKVAELCEEPKERDDILRSL 64 (117)
T ss_dssp HHHHHHHHTCCS-CCSS-T-HHHHHH-HHHHHHHHHHHSCSTTTHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCh-h-HHHHHH-HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 357999999875 3454 3 333322 5788999998888899999999876
No 3
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=43.16 E-value=13 Score=26.84 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=34.6
Q ss_pred HhHHhHHHhhhcCCCchHHHHHHHHHHHHHHHhccccccCchhhHHHHHHH
Q psy17864 90 QMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLA 140 (151)
Q Consensus 90 qMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~aGrELRF~KEKkdIL~LA 140 (151)
..|.+|+..-.-.||-+++.=- ..=++.||+-+-.+= +++|.+||.++
T Consensus 10 ~qA~~WL~~P~~~~~glGe~Ai--r~iv~earrvA~~~~-~~~r~~Il~~C 57 (158)
T d1st6a5 10 EQAQRWIDNPTVDDRGVGQAAI--RGLVAEGRRLANVMM-GPYRQDLLAKC 57 (158)
T ss_dssp HHHHHHHHSCCCCCCSCSHHHH--HHHHHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCCcccHHHH--HHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5699999998888887765421 123566777765544 77999999876
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.20 E-value=34 Score=23.37 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHhHHhHHHhhhcC-------CCc-------------hHHHHHHHHHHHHHHHhccccc
Q psy17864 86 DMRSQMALDWIAREQEN-------PGA-------------LGRELDQAERELETARLAGREL 127 (151)
Q Consensus 86 ~mRsqMALDWi~rE~~~-------pG~-------------i~~EL~~a~rELe~aR~aGrEL 127 (151)
..-..||-|-|.+.+.. ||+ |..|++.++.||+.+.+.|.+|
T Consensus 56 ~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~l 117 (129)
T d1ykhb1 56 NTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888877776643 875 5567777888888877766544
No 5
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.36 E-value=40 Score=20.59 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccCcccccCcch-hhhhhccccchhHHhh
Q psy17864 9 PSRRISDDFIEKAVAEARASFKVSFKFQVNSGL-NLDVTSTIGKKLATYW 57 (151)
Q Consensus 9 PsRrIt~eFi~ksv~eA~~s~~g~~~d~~~t~i-~~mLesn~GktmLEHW 57 (151)
|-++.|+||=.++|..+..+- +.++ ..--+-..+.++|-.|
T Consensus 2 ~rk~Ys~EfK~~aV~l~~~~~--------g~s~~~vA~~lGIs~~tl~~W 43 (89)
T d2jn6a1 2 PTKTYSEEFKRDAVALYENSD--------GASLQQIANDLGINRVTLKNW 43 (89)
T ss_dssp CCCCCCHHHHHHHHHHHTTGG--------GSCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHCCCHHHHHHH
Confidence 678899999999998664421 2223 2222334556677777
No 6
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}
Probab=15.80 E-value=48 Score=21.76 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q psy17864 8 HPSRRISDDFIEKAVAEAR 26 (151)
Q Consensus 8 hPsRrIt~eFi~ksv~eA~ 26 (151)
-|.+.|+++-|.+.|..|.
T Consensus 17 ~~~~pV~~e~l~~il~~A~ 35 (199)
T d2ifaa1 17 GKTVDLSKAELVALIQNAI 35 (199)
T ss_dssp ESCCSSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4777899999999999884
No 7
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.37 E-value=31 Score=21.53 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=13.5
Q ss_pred hhhHHHHHHHhhccccc
Q psy17864 68 QCSRQEVVAHYSNRALD 84 (151)
Q Consensus 68 ~CSRQEViahYS~r~LD 84 (151)
-.|=+|+|+||++..|+
T Consensus 76 F~sl~eLV~~y~~~~~~ 92 (106)
T d2cs0a1 76 HTSLDALVTFHQQKPIE 92 (106)
T ss_dssp BSSHHHHHHHHTTSCCS
T ss_pred CCCHHHHHHHHHHCCCC
Confidence 35668899999998774
No 8
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=14.29 E-value=22 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred hhhhhhccccchhHH--------------hhhchHHHHHhh
Q psy17864 41 LNLDVTSTIGKKLAT--------------YWNGSLKAMRER 67 (151)
Q Consensus 41 i~~mLesn~GktmLE--------------HWNGSLKAmREr 67 (151)
|+-|+.+|..+-+|. .|+||..-||.-
T Consensus 72 iSAmvNs~dd~GVL~G~Ws~~y~~G~~P~~W~GSv~IL~q~ 112 (320)
T d1ex0a4 72 GSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDILLEY 112 (320)
T ss_dssp HHHHHBCSTTCSSEEECCSSCCTTSCCGGGCCBSHHHHHHH
T ss_pred ehhhcccCCCCceEeccCCCCcCCCcCcccccCcHHHHHHH
Confidence 378999999888887 899999999864
No 9
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=14.16 E-value=23 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred chhhhhhccccchhHH--------------hhhchHHHHHhh
Q psy17864 40 GLNLDVTSTIGKKLAT--------------YWNGSLKAMRER 67 (151)
Q Consensus 40 ~i~~mLesn~GktmLE--------------HWNGSLKAmREr 67 (151)
-|+-|+.+|..+.+|. .|+||..-||+-
T Consensus 78 v~sAmvNs~dd~GVL~G~Ws~~y~~G~~P~~W~GSv~IL~q~ 119 (321)
T d1g0da4 78 TITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQW 119 (321)
T ss_dssp HHHHHHTTCTTTCSEEECCSSCCTTSCCGGGCSBSHHHHHHH
T ss_pred ehhhhcccCCCCceEecCccCCcCCCcCcccccCcHHHHHHH
Confidence 3478999999999888 899999999864
No 10
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=38 Score=22.30 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHhhhhhHHHHHHHhhcc
Q psy17864 62 KAMRERQCSRQEVVAHYSNR 81 (151)
Q Consensus 62 KAmREr~CSRQEViahYS~r 81 (151)
.+.+++-+.-++++.||+..
T Consensus 126 psf~~T~~~~e~i~~~y~~~ 145 (149)
T d1k0ma1 126 EEFASTCPDDEEIELAYEQV 145 (149)
T ss_dssp HHHHTTSCCHHHHHHHTTTT
T ss_pred hHHHHhCCCHHHHHHHHHHH
Confidence 35677755788999999764
Done!