RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17864
         (151 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.47
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 35/119 (29%)

Query: 35  FQVNSGLNLDVT---STIGKKLATYWNGSLKAMRER-QCSRQEVVAHYSNRALDDDMRSQ 90
             ++ G +L+      T     A+++  S   ++E+      E    +   A DD+  + 
Sbjct: 9   LTLSHG-SLEHVLLVPT-----ASFFIAS--QLQEQFNKILPEPTEGF---AADDEPTTP 57

Query: 91  MAL-----DWIAR--EQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHT 142
             L      +++   E    G   + L+    E E   L G          DI    H 
Sbjct: 58  AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---------NDI----HA 103


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 60  SLKAMRERQCSRQEVVAHYSNRALDDDMRSQMALDWIAR-EQENPGALGRELDQAERELE 118
           S++  RE Q  R +         LD   +     +W  + +++      R+ +Q E+   
Sbjct: 86  SIRKWREEQRKRLQ--------ELDAASKVMEQ-EWREKAKKDLEEWNQRQSEQVEKNKI 136

Query: 119 TARLAGRELRFPKEKKD 135
             R+A  +  F ++   
Sbjct: 137 NNRIA--DKAFYQQPDA 151


>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
           structural genomics, PSI, PR structure initiative,
           nysgrc; 2.20A {Streptomyces coelicolor}
          Length = 352

 Score = 27.3 bits (61), Expect = 2.0
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 61  LKAMRERQCSRQEVVAHYSN--RALDDDMRSQMALDWIAREQENPGALGRELDQAERELE 118
           + A+     + + +    +   +A D    S+      A   E  G      D+A R+  
Sbjct: 254 VAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHT 313

Query: 119 TARLAGRELRFPKEKKDILM-LAH 141
            A  A   +  P   +D    LA 
Sbjct: 314 IAIEALDAVDMPDRVRDRFTALAD 337


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,305,174
Number of extensions: 130584
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 7
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)