RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17864
         (151 letters)



>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom
           (Agaricus bisporus) [TaxId: 5341]}
          Length = 142

 Score = 25.6 bits (56), Expect = 1.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 30  KVSFKFQVNSGLNLDVTSTIG 50
           + + ++ V  G NL     IG
Sbjct: 122 RFAIEYTVTEGDNLKANLIIG 142


>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
           coli [TaxId: 562]}
          Length = 305

 Score = 25.9 bits (55), Expect = 2.7
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 8   HPSRRISDDFIEKAVAEARASFK 30
           H S R  D   +  + E R+ F 
Sbjct: 270 HVSSRYDDKGCQHLLRECRSIFP 292


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
          oxytoca [TaxId: 571]}
          Length = 551

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 1  MNSVFNEHPSRRISDDFIEKAVAEARASFKVSFKFQVNSGLNLDVT 46
          M S  +  PS +I +  + +   +  + F +   F    G+NL+  
Sbjct: 31 MESPNDPKPSIKIVNGAVTELDGKPVSDFDLIDHFIARYGINLNRA 76


>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 119

 Score = 23.9 bits (52), Expect = 6.5
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 88  RSQMALDWIAREQENPGALGRELDQAEREL--ETARLAGRELRFPKEKKDILMLA 140
           +   A  W+      PG  G    QA R++  E  +         KE+++IL   
Sbjct: 24  KMNQAKGWLRDPNAPPGDAGE---QAIRQILDEAGKAGELCA--GKERREILGTC 73


>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 211

 Score = 23.9 bits (50), Expect = 8.9
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 16/63 (25%)

Query: 87  MRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQING 146
           M  Q+  +W+ +EQE       ++    R L               + +IL +  + +  
Sbjct: 1   MAVQLLENWLLKEQE-------KIQTKYRHLN---------HISVVEPNILFIGDSIVEY 44

Query: 147 GSL 149
             L
Sbjct: 45  YPL 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,456
Number of extensions: 22579
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 10
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)