BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17866
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQQ7|LIX1L_RAT LIX1-like protein OS=Rattus norvegicus GN=Lix1l PE=2 SV=1
Length = 338
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 53/55 (96%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 99 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 153
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 54 SFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDIL 113
S + L+ ++ R QMALDW++REQ PGAL REL EREL+ ARLAG+ELRF KEKKDIL
Sbjct: 265 SHRALDDDI-RHQMALDWVSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDIL 323
Query: 114 MLAHTQINGGSLSS 127
MLA Q+ SS
Sbjct: 324 MLAAGQLGNMHSSS 337
>sp|Q8BQ89|LIX1L_MOUSE LIX1-like protein OS=Mus musculus GN=Lix1l PE=2 SV=2
Length = 337
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 53/55 (96%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 152
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 54 SFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDIL 113
S + L+ ++ R QMALDW++REQ PGAL REL EREL+ ARLAG+ELRF KEKKDIL
Sbjct: 264 SHRALDDDI-RHQMALDWVSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDIL 322
Query: 114 MLAHTQINGGSLSS 127
MLA Q+ SS
Sbjct: 323 MLAAGQLGNMHSSS 336
>sp|Q8IVB5|LIX1L_HUMAN LIX1-like protein OS=Homo sapiens GN=LIX1L PE=2 SV=1
Length = 337
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 53/55 (96%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 152
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 54 SFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDIL 113
S + L+ ++ R QMALDW++REQ PGAL REL EREL+ ARLAG+ELRF KEKKDIL
Sbjct: 264 SHRALDDDI-RHQMALDWVSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDIL 322
Query: 114 MLAHTQI 120
+LA Q+
Sbjct: 323 VLAAGQL 329
>sp|Q6P566|LIX1_MOUSE Protein limb expression 1 homolog OS=Mus musculus GN=Lix1 PE=2
SV=1
Length = 282
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
+NVV LQEFW+ KQ + A + LV+YES+PS+ PP+V YVTLPGGSCFG+FQ
Sbjct: 28 LNVVSMLQEFWESKQQQKATFSSEGLVVYESMPSSGPPFVSYVTLPGGSCFGNFQ 82
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 45/60 (75%)
Query: 61 EVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI 120
E RS MALDWI +E+E+PG L +EL A +LE AR AG+ELRF KEKK+IL LA TQI
Sbjct: 200 EKMRSHMALDWIMKERESPGILSQELRAALGQLEEARKAGQELRFYKEKKEILSLALTQI 259
>sp|Q8N485|LIX1_HUMAN Protein limb expression 1 homolog OS=Homo sapiens GN=LIX1 PE=2
SV=2
Length = 282
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
+NVV LQEFW+ KQ + A + +V+YES+P+ PP+V YVTLPGGSCFG+FQ
Sbjct: 28 LNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQ 82
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 61 EVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI 120
E RS MALDWI +E+++PG + +EL A R+LE AR AG+ELRF KEKK+IL LA TQI
Sbjct: 200 EKMRSHMALDWIMKERDSPGIVSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQI 259
>sp|Q8UVV7|LIX1_CHICK Protein limb expression 1 OS=Gallus gallus GN=LIX1 PE=2 SV=1
Length = 281
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
+NVV LQEFW+ KQ + A L + +++YES+ S PP+V YVTLPGGSCFG+FQ+
Sbjct: 28 LNVVAILQEFWESKQKKKAVLPSEGIIVYESLSSLGPPFVSYVTLPGGSCFGNFQS 83
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 47/67 (70%)
Query: 61 EVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI 120
E RS MALDWI +EQE+PG + +EL A RELE R AG ELRF KEKK+IL LA +QI
Sbjct: 200 EKMRSHMALDWIMKEQESPGIISQELQVALRELEEVRKAGHELRFYKEKKEILSLALSQI 259
Query: 121 NGGSLSS 127
+++
Sbjct: 260 YSDEVTT 266
>sp|Q9QBZ4|ENV_HV1MP Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1
group M subtype F2 (isolate MP255) GN=env PE=3 SV=2
Length = 843
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 6 EALQEFWQMKQTRGAELKNGALVIYESVPSA 36
EAL+ W + Q G ELKN A+ +++++ A
Sbjct: 778 EALKYLWNLTQHWGRELKNSAISLFDTIAIA 808
>sp|Q3V1M1|IGS10_MOUSE Immunoglobulin superfamily member 10 OS=Mus musculus GN=Igsf10 PE=2
SV=2
Length = 2594
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 22 LKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
L NG L I ++ P Y C P G+ F SFQ
Sbjct: 625 LNNGTLRILQATPKDQGHYRCVAANPSGADFSSFQ 659
>sp|P22708|TRAD2_ECOLX Coupling protein TraD OS=Escherichia coli GN=traD PE=3 SV=1
Length = 738
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 17 TRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQ 76
+ G +++ LV Y + S P CYVTLPG +++L + AR +
Sbjct: 521 STGKDMERQTLVSYSDIQSL-PDLTCYVTLPG------------PYPAVKLSLKYQARPK 567
Query: 77 ENPGALGRELDQAERELETARLAGRE 102
P + R+++ +A LA RE
Sbjct: 568 VAPEFIPRDINPEMENRLSAVLAARE 593
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,237,641
Number of Sequences: 539616
Number of extensions: 1674856
Number of successful extensions: 5157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 5136
Number of HSP's gapped (non-prelim): 70
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)