Query psy17866
Match_columns 127
No_of_seqs 37 out of 39
Neff 2.3
Searched_HMMs 29240
Date Sat Aug 17 01:01:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b7v_A Double-stranded RNA-spe 81.7 2.2 7.6E-05 26.6 4.2 35 2-49 4-42 (71)
2 1omc_A Omega-conotoxin GVIA; p 79.2 0.84 2.9E-05 25.3 1.4 14 45-58 2-15 (28)
3 2khx_A Ribonuclease 3; drosha, 65.7 4.6 0.00016 26.6 2.8 42 4-48 3-48 (85)
4 3adg_A F21M12.9 protein; HYL1, 63.5 12 0.00042 23.2 4.4 39 2-48 3-44 (73)
5 3adj_A F21M12.9 protein; HYL1, 61.2 12 0.0004 23.7 4.0 39 2-48 4-46 (76)
6 1t1j_A Hypothetical protein; s 57.8 4.9 0.00017 28.9 1.9 23 88-110 99-121 (125)
7 2qdq_A Talin-1; dimerisation d 57.5 7.4 0.00025 25.1 2.5 15 86-100 17-31 (50)
8 1di2_A XLRBPA, double stranded 52.2 18 0.00061 22.2 3.6 40 5-48 3-42 (69)
9 2dix_A Interferon-inducible do 49.3 34 0.0012 22.0 4.8 42 2-48 8-49 (84)
10 1uhz_A Staufen (RNA binding pr 48.3 33 0.0011 22.5 4.7 39 2-48 6-48 (89)
11 1x48_A Interferon-induced, dou 47.5 49 0.0017 21.6 5.4 38 2-48 6-46 (88)
12 2b7t_A Double-stranded RNA-spe 44.2 40 0.0014 20.9 4.4 39 2-50 4-46 (73)
13 1ekz_A DSRBDIII, maternal effe 41.9 23 0.00077 22.2 2.9 38 2-48 7-48 (76)
14 2l3j_A Double-stranded RNA-spe 41.8 37 0.0013 25.7 4.6 35 2-49 161-199 (236)
15 3llh_A RISC-loading complex su 39.7 57 0.002 21.2 4.8 37 3-48 15-55 (90)
16 2dmy_A Spermatid perinuclear R 39.5 37 0.0013 22.6 3.9 40 3-48 17-56 (97)
17 3adl_A RISC-loading complex su 38.9 40 0.0014 22.2 3.9 43 2-48 15-57 (88)
18 1x49_A Interferon-induced, dou 38.3 53 0.0018 21.9 4.5 42 2-48 14-55 (97)
19 2lfp_A Bacteriophage SPP1 comp 36.9 81 0.0028 21.3 5.4 41 2-44 7-50 (139)
20 1x47_A DGCR8 protein; structur 36.4 58 0.002 21.7 4.5 39 2-48 16-56 (98)
21 3k5j_A Putative SUFU (suppress 35.1 30 0.001 25.3 3.1 26 26-52 37-62 (183)
22 2cpn_A TAR RNA-binding protein 35.0 54 0.0018 21.5 4.1 43 2-48 16-58 (89)
23 2lw6_A Avrpiz-T protein; plant 31.4 7.5 0.00026 26.9 -0.6 13 98-110 22-34 (80)
24 1w4s_A Polybromo, polybromo 1 29.8 54 0.0019 23.5 3.7 35 11-45 16-50 (174)
25 1qu6_A Protein kinase PKR; dsR 29.8 88 0.003 22.3 4.8 42 2-48 13-54 (179)
26 1o0w_A Ribonuclease III, RNAse 28.4 50 0.0017 24.8 3.4 42 3-48 180-221 (252)
27 2l33_A Interleukin enhancer-bi 28.3 30 0.001 23.2 2.0 42 3-50 15-56 (91)
28 3u85_B Histone-lysine N-methyl 27.2 19 0.00066 19.7 0.7 9 45-53 7-15 (21)
29 3irb_A Uncharacterized protein 26.3 36 0.0012 24.2 2.2 13 37-49 100-113 (145)
30 2gnr_A Conserved hypothetical 24.0 34 0.0011 24.6 1.7 12 38-49 101-113 (145)
31 2kou_A Dicer-like protein 4; A 23.9 84 0.0029 21.3 3.6 49 3-53 5-53 (102)
32 2h85_A Putative ORF1AB polypro 22.3 82 0.0028 26.8 3.9 32 24-58 262-294 (347)
33 3dvk_B Voltage-dependent R-typ 21.9 52 0.0018 18.1 1.8 12 7-18 11-22 (23)
34 2nug_A Ribonuclease III, RNAse 21.6 83 0.0028 22.9 3.4 42 3-48 151-192 (221)
35 4g92_C HAPE; transcription fac 21.6 45 0.0015 23.2 1.9 13 6-18 17-29 (119)
36 2l2n_A Hyponastic leave 1; DSR 20.9 67 0.0023 21.6 2.6 38 3-48 18-58 (103)
37 2cos_A Serine/threonine protei 20.3 38 0.0013 22.0 1.2 9 66-74 39-47 (54)
38 1whq_A RNA helicase A; double- 20.1 96 0.0033 20.8 3.2 38 2-48 6-46 (99)
No 1
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=81.71 E-value=2.2 Score=26.63 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPGG 49 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPGG 49 (127)
-|-+..||||. .+..|+ +-|...|-|+|=|++.|-
T Consensus 4 knp~s~L~E~~-------------~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~ 42 (71)
T 2b7v_A 4 KNPVMILNELR-------------PGLKYDFLSESGESHAKSFVMSVVVDGQ 42 (71)
T ss_dssp SCHHHHHHHHC-------------CSCEEEEEECCCCTTTCCEEEEEECSSC
T ss_pred CCHHHHHHHhC-------------CCCEEEEEEeECCCCCceEEEEEEECCE
Confidence 37789999991 344565 457777889999999774
No 2
>1omc_A Omega-conotoxin GVIA; presynaptic neurotoxin; HET: HYP; NMR {Conus geographus} SCOP: g.3.6.1 PDB: 1ttl_A* 2cco_A* 1tr6_A*
Probab=79.17 E-value=0.84 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.5
Q ss_pred ecCCCCcCCCcccc
Q psy17866 45 TLPGGSCFGSFQTL 58 (127)
Q Consensus 45 TLPGGSCFG~fq~C 58 (127)
|-|||.|++..++|
T Consensus 2 t~~G~~C~~~~~CC 15 (28)
T 1omc_A 2 KSPGSSCSPTSYNC 15 (28)
T ss_dssp BCTTCBCCTTTTCB
T ss_pred CCCCCccCCCccHH
Confidence 67999999999887
No 3
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=65.66 E-value=4.6 Score=26.58 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCC
Q psy17866 4 VVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPG 48 (127)
Q Consensus 4 VVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPG 48 (127)
-...|||+=|..++++... .+..|+ +-|+..|-|+|=|++.|
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~---~~p~Y~~~~~~Gp~H~~~F~v~V~v~g 48 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEP---DIPLYKTLQTVGPSHARTYTVAVYFKG 48 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCC---CCCCEEECCCCCSSSCCCEEEEEEETT
T ss_pred HHHHHHHHHhhhhhhcCCC---CCceEEEEEeECCCCCCcEEEEEEECC
Confidence 3568999988644333221 233454 56777788999999977
No 4
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=63.47 E-value=12 Score=23.24 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEee---cCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYES---VPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEs---vps~~pPyVcyVTLPG 48 (127)
.|-...|||+=|.+ +-. +..|+. -|...|-|+|=|++.|
T Consensus 3 ~d~Kt~LqE~~q~~---~~~-----~p~Y~~~~~Gp~h~~~F~~~v~v~g 44 (73)
T 3adg_A 3 HVFKSRLQEYAQKY---KLP-----TPVYEIVKEGPSHKSLFQSTVILDG 44 (73)
T ss_dssp CSHHHHHHHHHHHT---TCC-----CCEEEEEEESSTTSCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHc---CCC-----CCEEEEEeECCCCCCeEEEEEEECC
Confidence 47788999987653 222 233443 5777778999999977
No 5
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=61.21 E-value=12 Score=23.67 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPG 48 (127)
.|-...|||+=|.+ +- .+..|+ +-|...|-|+|=|++.|
T Consensus 4 ~n~Kt~LqE~~q~~---~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~g 46 (76)
T 3adj_A 4 GLCKNLLQEYAQKM---NY-----AIPLYQCQKVETLGRVTQFTCTVEIGG 46 (76)
T ss_dssp HHHHHHHHHHHHTT---TC-----CCCEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCHHHHHHHHHHHh---CC-----CCCeEEEeeccCCCCCCcEEEEEEECC
Confidence 57888999987643 21 233454 56777788999999977
No 6
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=57.77 E-value=4.9 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcccccccchhhH
Q psy17866 88 QAERELETARLAGRELRFPKEKK 110 (127)
Q Consensus 88 ~a~rELe~aR~aGrELRF~KEKk 110 (127)
=|..|++.|++.|+.+||+.|+.
T Consensus 99 Gm~~Ei~~A~~~g~pV~~~~~~~ 121 (125)
T 1t1j_A 99 GIRREMEFFEAGGQRVSLWSEVE 121 (125)
T ss_dssp HHHHHHHHHHHTTCEEEEHHHHG
T ss_pred hHHHHHHHHHHCCCcEEEEcccc
Confidence 36779999999999999998874
No 7
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=57.48 E-value=7.4 Score=25.05 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcc
Q psy17866 86 LDQAERELETARLAG 100 (127)
Q Consensus 86 L~~a~rELe~aR~aG 100 (127)
+-+.|||||+||..=
T Consensus 17 iLr~ErELEeAr~~L 31 (50)
T 2qdq_A 17 MLRKERELEEARKKL 31 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 446789999999753
No 8
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=52.20 E-value=18 Score=22.19 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 5 VEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 5 VeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
+..|||+=|.+ +-..+ .=-++-|+-|+..|-|+|=|++.|
T Consensus 3 ~s~LqE~~q~~---~~~~p-~Y~~~~~~Gp~h~~~F~~~v~v~~ 42 (69)
T 1di2_A 3 VGSLQELAVQK---GWRLP-EYTVAQESGPPHKREFTITCRVET 42 (69)
T ss_dssp HHHHHHHHHHH---TCCCC-EEEEEEEESCGGGCEEEEEEEETT
T ss_pred HHHHHHHHHHc---CCCCC-EEEEEEeECCCCCCeEEEEEEECC
Confidence 57899986653 22111 112233466777788999999987
No 9
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=49.33 E-value=34 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
.|-+..||||=|.+ + . ...=-++-|+-|...|-|+|=|++.|
T Consensus 8 ~d~Ks~LqE~~q~~---~-~-~p~Y~~~~~~Gp~h~~~F~~~v~v~~ 49 (84)
T 2dix_A 8 KTPIQVLHEYGMKT---K-N-IPVYECERSDVQIHVPTFTFRVTVGD 49 (84)
T ss_dssp CCHHHHHHHHHHHT---T-C-CCEEEEEEEECSSSSCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHc---C-C-CCeEEEEEeECCCCCCeEEEEEEECC
Confidence 46788999987653 2 1 22222334466888888999999965
No 10
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=48.27 E-value=33 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPG 48 (127)
.|-+..||||=|.+. - .+..|+ +-|...|-|+|=|++.|
T Consensus 6 ~d~Kt~LqE~~Q~~~---~-----~~P~Y~~~~~~Gp~H~~~F~~~v~v~g 48 (89)
T 1uhz_A 6 SGPISRLAQIQQARK---E-----KEPDYILLSERGMPRRREFVMQVKVGN 48 (89)
T ss_dssp SCHHHHHHHHHHHTT---S-----CCCEEEEEEEESCSTTCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHhC---C-----CCCeEEEEEeECCCCCCeEEEEEEECC
Confidence 477889999876532 1 234454 56777788999999965
No 11
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=47.46 E-value=49 Score=21.62 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEe--ecCCCCC-CeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYE--SVPSASP-PYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YE--svps~~p-PyVcyVTLPG 48 (127)
.|-...||||=|.+. . .+ .|+ +-|...| .|+|-|++.|
T Consensus 6 ~d~Kt~LqE~~Q~~~---~-----~~-~Y~~~~Gp~H~~~~F~~~v~v~g 46 (88)
T 1x48_A 6 SGYIGLVNSFAQKKK---L-----SV-NYEQCEPNSELPQRFICKCKIGQ 46 (88)
T ss_dssp SCHHHHHHHHHHHTT---C-----CE-EEEECCCSSSSSCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHcC---C-----CC-eeEEeeCCCCCCceEEEEEEECC
Confidence 467889999876531 1 24 675 4466666 5999999976
No 12
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=44.16 E-value=40 Score=20.91 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEE----eecCCCCCCeEEEEecCCCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIY----ESVPSASPPYVCYVTLPGGS 50 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~Y----Esvps~~pPyVcyVTLPGGS 50 (127)
+|-...|||+=| + ..+..| ++-|...|-|++-|++.|-.
T Consensus 4 ~d~Ks~Lqe~~q-~---------~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~ 46 (73)
T 2b7t_A 4 VLPKNALMQLNE-I---------KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV 46 (73)
T ss_dssp SSSHHHHHHHHH-H---------CSCCEEEEEEEECSSSSCEEEEEEESSSSE
T ss_pred CCHHHHHHHHHc-C---------CCCceEEEEEeeCCCCCCeEEEEEEECCEE
Confidence 466789999877 2 123345 45688888899999997743
No 13
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=41.87 E-value=23 Score=22.18 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEee----cCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYES----VPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEs----vps~~pPyVcyVTLPG 48 (127)
.|-+..||||=|.+. - . ..|+. -|+..|-|+|=|++.|
T Consensus 7 ~d~ks~LqE~~q~~~---~-----~-p~Y~~~~~~Gp~h~~~F~~~v~i~~ 48 (76)
T 1ekz_A 7 KSPISQVHEIGIKRN---M-----T-VHFKVLREEGPAHMKNFITACIVGS 48 (76)
T ss_dssp SCHHHHHHHHHHHTT---C-----C-CEEEESSSCCSSSCSCSSEEEEETT
T ss_pred CCHHHHHHHHHHHcC---C-----C-CEEEEEEeECCCCCCcEEEEEEECC
Confidence 366889999876532 1 1 45664 4666778999999865
No 14
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=41.75 E-value=37 Score=25.68 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEee----cCCCCCCeEEEEecCCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYES----VPSASPPYVCYVTLPGG 49 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEs----vps~~pPyVcyVTLPGG 49 (127)
.|-+..|||| ..++.|+. -|...|-|+|=|++-|-
T Consensus 161 ~d~ks~LqE~-------------~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~ 199 (236)
T 2l3j_A 161 KNPVMILNEL-------------RPGLKYDFLSESGESHAKSFVMSVVVDGQ 199 (236)
T ss_dssp CCHHHHHHHH-------------CCCEEEEEECCSSSSSSCCEEEEEEETTE
T ss_pred CCHHHHHHhc-------------CCCCcEEEEEeeCCCCCCeEEEEEEECCE
Confidence 3778999998 13567774 46666779999999764
No 15
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=39.70 E-value=57 Score=21.22 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPG 48 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPG 48 (127)
|-+..||||=|. ++. +..|+ +-|+..|-|++-|++.|
T Consensus 15 d~Ks~LqE~~q~---~~~------~p~Y~~~~~~Gp~H~~~F~~~v~v~g 55 (90)
T 3llh_A 15 TPISLLQEYGTR---IGK------TPVYDLLKAEGQAHQPNFTFRVTVGD 55 (90)
T ss_dssp CHHHHHHHHHHH---TTC------CCEEEEEEEC-----CCEEEEEEETT
T ss_pred CHHHHHHHHHHh---cCC------CCEEEEEEeECCCCCCcEEEEEEECC
Confidence 668899998642 221 34554 45777778999999975
No 16
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=39.51 E-value=37 Score=22.56 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
|-...||||=|.+ .. ..=-++-|+-|...|-|++=|++.|
T Consensus 17 d~Kt~LqE~~Q~~-----~~-p~Y~~~~~~Gp~H~~~F~~~v~v~g 56 (97)
T 2dmy_A 17 DLMNALMRLNQIR-----PG-LQYKLLSQSGPVHAPVFTMSVDVDG 56 (97)
T ss_dssp SCTHHHHHHHHHS-----CS-CCCEEEEEESCSSSCEEEEEEEETT
T ss_pred CHHHHHHHHHhcC-----CC-ceEEEEEeeCCCCCCeEEEEEEECC
Confidence 4567899987762 11 2223344567888888999999976
No 17
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=38.89 E-value=40 Score=22.17 Aligned_cols=43 Identities=28% Similarity=0.225 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
.|-...|||+=|.+ +-..+ .=-++-|+-|+..|-|+|=|++.|
T Consensus 15 ~d~Ks~LqE~~Q~~---~~~~P-~Y~~~~~~Gp~H~~~F~~~v~v~g 57 (88)
T 3adl_A 15 SHEVGALQELVVQK---GWRLP-EYTVTQESGPAHRKEFTMTCRVER 57 (88)
T ss_dssp CCHHHHHHHHHHHT---TCCCC-EEEEEEEESCTTSCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHc---CCCCC-EEEEEEeECCCCCCeEEEEEEECC
Confidence 46788999986653 22111 122334466888888999999976
No 18
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=38.35 E-value=53 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
.|-+..||||=|.+. -. + .=-++-|+-|...|.|+|=|++.|
T Consensus 14 ~n~Kt~LqE~~Q~~~---~~-p-~Y~~~~~~Gp~H~~~F~v~v~i~g 55 (97)
T 1x49_A 14 GFYMDKLNKYRQMHG---VA-I-TYKELSTSGPPHDRRFTFQVLIDE 55 (97)
T ss_dssp THHHHHHHHHHHHHT---CC-E-EEEEEEEESCSSSCEEEEEEEESS
T ss_pred CCHHHHHHHHHHHcC---CC-C-eEEEEEeeCCCCCCcEEEEEEECC
Confidence 578899999876542 11 1 111223456777788999999876
No 19
>2lfp_A Bacteriophage SPP1 complete nucleotide sequence; viral protein; NMR {Bacillus phage SPP1}
Probab=36.91 E-value=81 Score=21.32 Aligned_cols=41 Identities=22% Similarity=0.053 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHhhhccccC--CCceEEEeecCCCC-CCeEEEE
Q psy17866 2 VNVVEALQEFWQMKQTRGAELK--NGALVIYESVPSAS-PPYVCYV 44 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~--~~~lV~YEsvps~~-pPyVcyV 44 (127)
.+...+||.-=-.+-+.-+.+. -|+ ||+.+|.+- .|||-+=
T Consensus 7 ~s~~~~L~~ai~~~L~~d~~l~allg~--iyd~~P~~~~~Pyv~lg 50 (139)
T 2lfp_A 7 KLASRALQKATVENLESYQPLMEMVNQ--VTESPGKDDPYPYVVIG 50 (139)
T ss_dssp THHHHHHHHHHHHHHHHCTTTTTTCSC--EESSCCTTSCSSEEEEE
T ss_pred cChHHHHHHHHHHHHhhChHHHhhhCc--eeccCCCCCCCCEEEEe
Confidence 3445556654444443333333 244 999999763 3777553
No 20
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=36.37 E-value=58 Score=21.69 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCC--CCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSAS--PPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~--pPyVcyVTLPG 48 (127)
.|-+..|||+=|.+. -.+..|+.+-..+ |-|+|=|++.|
T Consensus 16 kd~Kt~LqE~~Q~~~--------~~~P~Y~~~~~~Gp~~~F~~~V~v~g 56 (98)
T 1x47_A 16 KSEVCILHEYMQRVL--------KVRPVYNFFECENPSEPFGASVTIDG 56 (98)
T ss_dssp CCHHHHHHHHHHHHT--------CSCCEEEEEECSSSSCCEEEEEEETT
T ss_pred CCHHHHHHHHHHHcC--------CCCCeEEEEEeECCCCcEEEEEEECC
Confidence 356789999766532 1244565442222 77999999876
No 21
>3k5j_A Putative SUFU (suppressor of fused protein) homol; YP_208451.1; HET: MSE; 1.40A {Neisseria gonorrhoeae fa 1090}
Probab=35.12 E-value=30 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.1
Q ss_pred ceEEEeecCCCCCCeEEEEecCCCCcC
Q psy17866 26 ALVIYESVPSASPPYVCYVTLPGGSCF 52 (127)
Q Consensus 26 ~lV~YEsvps~~pPyVcyVTLPGGSCF 52 (127)
++=|+..-|++..+|+.|||+ |-|..
T Consensus 37 ~idVl~~~~~~~~~~~t~~T~-GmS~~ 62 (183)
T 3k5j_A 37 DFQVFQVIPNHEDEPWVYVSS-GIGQF 62 (183)
T ss_dssp TCEEEEECCSSTTSCEEEEEE-STHHH
T ss_pred ceEEEEECCCCCCCeEEEEeC-CcccC
Confidence 477788889999999999998 55555
No 22
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=34.99 E-value=54 Score=21.50 Aligned_cols=43 Identities=28% Similarity=0.195 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
.|-+..||||=|.+. -.++ .=-++-++-|...|-|+|=|++.|
T Consensus 16 ~d~Kt~LqE~~Qk~~---~~~P-~Y~~~~~~Gp~h~~~F~~~v~i~g 58 (89)
T 2cpn_A 16 CNPVGALQELVVQKG---WRLP-EYTVTQESGPAHRKEFTMTCRVER 58 (89)
T ss_dssp CCHHHHHHHHHHHHT---CCCC-EEEEEEEECCSSSCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHcC---CCCC-eEEEEeeECCCCCCeEEEEEEECC
Confidence 367889999876532 1111 112233456777888999999986
No 23
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=31.40 E-value=7.5 Score=26.89 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=11.5
Q ss_pred hcccccccchhhH
Q psy17866 98 LAGRELRFPKEKK 110 (127)
Q Consensus 98 ~aGrELRF~KEKk 110 (127)
++|+-.|||.||-
T Consensus 22 kagwavrfyeekp 34 (80)
T 2lw6_A 22 KAGWAVRFYEEKP 34 (80)
T ss_dssp ETTSCEEEEECCT
T ss_pred ccceEEEeeecCC
Confidence 6899999999984
No 24
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=29.82 E-value=54 Score=23.47 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHhhhccccCCCceEEEeecCCCCCCeEEEEe
Q psy17866 11 FWQMKQTRGAELKNGALVIYESVPSASPPYVCYVT 45 (127)
Q Consensus 11 FWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVT 45 (127)
|.+.-.-.|..++-|..|.-.+-..+.||||+.|.
T Consensus 16 ~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~ 50 (174)
T 1w4s_A 16 YSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIE 50 (174)
T ss_dssp ----------CCCTTCEEEECCSSTTSCCEEEEEE
T ss_pred EeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEE
Confidence 44444455778888988888776667899998875
No 25
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=29.79 E-value=88 Score=22.31 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
.|-+..|||+=|.+ +- ...=.++=++-|...|-|+|=|++.|
T Consensus 13 ~n~ks~LqE~~q~~---~~--~p~Y~~~~~~Gp~h~~~F~~~v~v~g 54 (179)
T 1qu6_A 13 GFFMEELNTYRQKQ---GV--VLKYQELPNSGPPHDRRFTFQVIIDG 54 (179)
T ss_dssp CSHHHHHHHHHHHH---TC--CCEEEEEESCBTTTBCCEEEEEESSS
T ss_pred CCHHHHHHHHHHhC---CC--CCeEEEeeccCCCCCCeEEEEEEECC
Confidence 47789999977653 21 11112223455666777999999966
No 26
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=28.39 E-value=50 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
|-+..|||+=|.+. -.. ..--++-++-|...|.|+|=|++.|
T Consensus 180 dpkt~LqE~~q~~~---~~~-p~Y~~~~~~Gp~h~~~F~v~v~v~g 221 (252)
T 1o0w_A 180 DYKTALQEIVQSEH---KVP-PEYILVRTEKNDGDRIFVVEVRVNG 221 (252)
T ss_dssp CHHHHHHHHHHHHH---SSC-CEEEEEEEECCTTSCEEEEEEEETT
T ss_pred CHHHHHHHHHHHcC---CCC-ceEEEEeeeCCCCCCeEEEEEEECC
Confidence 56778888765432 111 1122334566777788999999877
No 27
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=28.25 E-value=30 Score=23.21 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCCCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGS 50 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPGGS 50 (127)
+.+..|||+=|. ++ .+ .=-++=|+-|...|-|+|-|++.|-.
T Consensus 15 ~~K~~LqEl~Qk---~~--~p-~Y~~v~~~Gp~H~~~F~v~V~v~g~~ 56 (91)
T 2l33_A 15 HGKNPVMELNEK---RR--GL-KYELISETGGSHDKRFVMEVEVDGQK 56 (91)
T ss_dssp STTCHHHHHHHH---CS--SC-EEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHh---CC--CC-eEEEEEeeCCCCCCeEEEEEEECCEE
Confidence 445678996554 22 11 22223345677778899999998743
No 28
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=27.15 E-value=19 Score=19.68 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=6.8
Q ss_pred ecCCCCcCC
Q psy17866 45 TLPGGSCFG 53 (127)
Q Consensus 45 TLPGGSCFG 53 (127)
.-|||||-+
T Consensus 7 arpg~s~~s 15 (21)
T 3u85_B 7 ARPGTTGGG 15 (26)
T ss_pred cCCCcccCC
Confidence 459999964
No 29
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=26.27 E-value=36 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=11.0
Q ss_pred CCCeE-EEEecCCC
Q psy17866 37 SPPYV-CYVTLPGG 49 (127)
Q Consensus 37 ~pPyV-cyVTLPGG 49 (127)
.+||+ .+|.|++|
T Consensus 100 ~~Py~valVeLdeg 113 (145)
T 3irb_A 100 AQPVYIALIRFPNI 113 (145)
T ss_dssp EEEEEEEEEECTTC
T ss_pred CCCEEEEEEEeCCC
Confidence 46887 89999998
No 30
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.99 E-value=34 Score=24.62 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=10.6
Q ss_pred CCeE-EEEecCCC
Q psy17866 38 PPYV-CYVTLPGG 49 (127)
Q Consensus 38 pPyV-cyVTLPGG 49 (127)
+||+ ++|.|++|
T Consensus 101 ~Py~valVeLdeg 113 (145)
T 2gnr_A 101 QPVYIALIRFPNI 113 (145)
T ss_dssp EEEEEEEEECTTC
T ss_pred CCEEEEEEEeCCC
Confidence 5787 99999998
No 31
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=23.86 E-value=84 Score=21.28 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCCCCcCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFG 53 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPGGSCFG 53 (127)
|.|..|+.|=+.=.+ ......-....|+.+...+.-| |-|+||.-|-+-
T Consensus 5 sAi~lL~~yC~~Lp~-d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr 53 (102)
T 2kou_A 5 SSISMMYKYCSRLPH-DEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPIS 53 (102)
T ss_dssp HHHHHHHHHHTTSSS-CTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSC
T ss_pred HHHHHHHHHHHhCCC-ccccCccceEEEeEeecCCCeE-EEEECCCCCCCC
Confidence 667777777654322 2233455677777777777777 999999988754
No 32
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48 d.294.1.2 PDB: 2ozk_A 2rhb_A
Probab=22.26 E-value=82 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCceEEEeecCCCCCCeEEEEe-cCCCCcCCCcccc
Q psy17866 24 NGALVIYESVPSASPPYVCYVT-LPGGSCFGSFQTL 58 (127)
Q Consensus 24 ~~~lV~YEsvps~~pPyVcyVT-LPGGSCFG~fq~C 58 (127)
.|.|++=|.+|+-++--.|+|| .|+|| +=+.|
T Consensus 262 ~~~l~~~efv~~Dst~~~~~Vt~~~~~S---sK~VC 294 (347)
T 2h85_A 262 DSPLKLEDFIPMDSTVKNYFITDAQTGS---SKCGC 294 (347)
T ss_dssp HSCEEEEESSCSCCSSEEEEEEETTTCC---EEEEE
T ss_pred ccccchhhhccCCCceeEEEEEecCCCc---eecee
Confidence 3678888989998888999999 99998 45677
No 33
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=21.85 E-value=52 Score=18.15 Aligned_cols=12 Identities=0% Similarity=0.495 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhh
Q psy17866 7 ALQEFWQMKQTR 18 (127)
Q Consensus 7 aLqeFWq~Kq~r 18 (127)
++||||.+..+|
T Consensus 11 lI~d~~r~~k~r 22 (23)
T 3dvk_B 11 MIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 689999987655
No 34
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=21.64 E-value=83 Score=22.94 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPG 48 (127)
|-+..|||+=|.+.. ..+ .=-++-++-|+..|.|+|=|++.|
T Consensus 151 ~pks~LqE~~q~~~~---~~p-~Y~~~~~~G~~h~~~F~v~v~v~~ 192 (221)
T 2nug_A 151 DYKTILQEITQKRWK---ERP-EYRLISVEGPHHKKKFIVEAKIKE 192 (221)
T ss_dssp CHHHHHHHHHHHHHS---CCC-EEEEEEEESCGGGCEEEEEEEETT
T ss_pred CHHHHHHHHHHHcCC---CCc-eEEEEEeeCCCCCceEEEEEEECC
Confidence 557788887654321 111 122334566776788999999977
No 35
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=21.64 E-value=45 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhh
Q psy17866 6 EALQEFWQMKQTR 18 (127)
Q Consensus 6 eaLqeFWq~Kq~r 18 (127)
+.|++||+.....
T Consensus 17 ~~l~~fw~~~~~~ 29 (119)
T 4g92_C 17 DILTTYWQHVINH 29 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7899999886554
No 36
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=20.92 E-value=67 Score=21.58 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEee---cCCCCCCeEEEEecCC
Q psy17866 3 NVVEALQEFWQMKQTRGAELKNGALVIYES---VPSASPPYVCYVTLPG 48 (127)
Q Consensus 3 NVVeaLqeFWq~Kq~rga~~~~~~lV~YEs---vps~~pPyVcyVTLPG 48 (127)
|-...||||=|.+ +-. +..|+. -|...|-|+|=|++.|
T Consensus 18 d~Kt~LqE~~Q~~---~~~-----~P~Y~~~~~Gp~H~~~F~~~V~v~g 58 (103)
T 2l2n_A 18 VFKSRLQEYAQKY---KLP-----TPVYEIVKEGPSHKSLFQSTVILDG 58 (103)
T ss_dssp -CTTHHHHHHHHT---TCC-----CCEEEEEEESCSSSCEEEEEEEETT
T ss_pred CHHHHHHHHHHHc---CCC-----CCeEEEEeEcCCCCCeEEEEEEECC
Confidence 4456899976543 222 234444 5666677999999987
No 37
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.26 E-value=38 Score=21.96 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=7.8
Q ss_pred hhHhhHHHh
Q psy17866 66 QMALDWIAR 74 (127)
Q Consensus 66 qMALDWi~r 74 (127)
+-|+|||.|
T Consensus 39 e~AmewL~k 47 (54)
T 2cos_A 39 EAALEYISK 47 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 679999987
No 38
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=20.10 E-value=96 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCceEEE---eecCCCCCCeEEEEecCC
Q psy17866 2 VNVVEALQEFWQMKQTRGAELKNGALVIY---ESVPSASPPYVCYVTLPG 48 (127)
Q Consensus 2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~Y---Esvps~~pPyVcyVTLPG 48 (127)
.|-...|||+=|.+ .. +..| ++-|...|-|+|=|++.|
T Consensus 6 ~d~Kt~LqE~~Qk~--~~-------~P~Y~~~~~Gp~H~~~F~~~V~v~g 46 (99)
T 1whq_A 6 SGIKNFLYAWCGKR--KM-------TPAYEIRAVGNKNRQKFMCEVRVEG 46 (99)
T ss_dssp CSSHHHHHHHHHHT--TC-------CCEEEEEEEECSSSEEEEEEEECTT
T ss_pred CCHHHHHHHHHHHC--CC-------CCeEEEeeecCCCCCeEEEEEEECC
Confidence 35678999977654 21 2344 466777788999999977
Done!