RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17866
(127 letters)
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 28.5 bits (64), Expect = 0.41
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 22 LKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEV 62
L++G+L I+ + Y C G+ + LEVEV
Sbjct: 150 LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 28.8 bits (64), Expect = 0.46
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 11/77 (14%)
Query: 41 VCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGR----------ELDQAE 90
T G +E ++ W+ + R + +A
Sbjct: 119 FMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPIVSLADPTRAV 178
Query: 91 RELETARLAG-RELRFP 106
E++ G + +
Sbjct: 179 EEVDFVLARGAKLVLVR 195
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 28.3 bits (62), Expect = 0.68
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 22 LKNGALVIYESVPS-ASPPYVCYVTLPGGSCFGSFQTLEVEV 62
+KNG L I + + Y+C VT G C +
Sbjct: 86 VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 26.7 bits (59), Expect = 2.3
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 22 LKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRS 65
LK+G L I S Y C G+ L V+V R
Sbjct: 160 LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 26.1 bits (57), Expect = 2.9
Identities = 3/40 (7%), Positives = 13/40 (32%)
Query: 22 LKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVE 61
++ +L + + Y ++ + S+ +
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 3.9
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 26/113 (23%)
Query: 17 TRGAELKNGALVIYESVPSASPPYV------CYVTLPGGSCFGSFQTLEVEVSRSQMA-- 68
TR L +G+L VP+AS LP + F + + +++
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT--EGFAADDEPTTPAELVGK 63
Query: 69 -LDWIAR--EQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHT 118
L +++ E G + L+ E E L G DI H
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---------NDI----HA 103
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 25.5 bits (56), Expect = 5.2
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 17 TRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQ 66
+ GAL I +S S Y C T G+ + + L V ++
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 25.3 bits (56), Expect = 6.9
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 22 LKNGALVIYES 32
LK G +I ES
Sbjct: 119 LKKGNTIIVES 129
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 24.8 bits (54), Expect = 7.0
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 23 KNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVS 63
K L++ + P S Y + + + + V V+
Sbjct: 77 KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVT 117
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 24.9 bits (55), Expect = 8.2
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 17/48 (35%)
Query: 62 VSRSQMALDWIAR--------------EQ--ENPGAL-GRELDQAERE 92
SQMAL W+ R Q + G L R AE
Sbjct: 296 QKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECA 343
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 24.9 bits (55), Expect = 9.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 19 GAELKNGALVIYES 32
G LK G LV+ ES
Sbjct: 134 GKYLKPGMLVVLES 147
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 24.9 bits (54), Expect = 9.2
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 15 KQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEV 62
+ + + L I S + Y C V L + + +E
Sbjct: 58 EDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.378
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,923,299
Number of extensions: 102780
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 28
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)