RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17866
         (127 letters)



>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
           N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score = 28.1 bits (61), Expect = 0.15
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 11  FWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEV 62
                        +  +         +  Y C V+  GG  +G   ++ + V
Sbjct: 51  QITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEV-SIHLTV 101


>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 119

 Score = 27.0 bits (60), Expect = 0.39
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 63  SRSQMALDWIAREQENPGALGRELDQAEREL--ETARLAGRELRFPKEKKDILMLA 116
           S+   A  W+      PG  G    QA R++  E  +         KE+++IL   
Sbjct: 23  SKMNQAKGWLRDPNAPPGDAGE---QAIRQILDEAGKAGELCA--GKERREILGTC 73


>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 105

 Score = 24.1 bits (51), Expect = 4.1
 Identities = 12/41 (29%), Positives = 15/41 (36%)

Query: 23  KNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVS 63
            N ++VI    PS    Y C V       F      EV +S
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS 103


>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 24.2 bits (51), Expect = 4.4
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 12  WQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVE 61
            +    R + +    + I ++  + +  Y C VT        SF  LEV 
Sbjct: 55  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSF-DLEVH 103


>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
           different domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 24.2 bits (51), Expect = 4.5
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 11  FWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVS 63
                  R +++    L I ++ P+ +  Y C V+        +F  L V  +
Sbjct: 58  QLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNF-NLTVHEA 109


>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 158

 Score = 24.0 bits (52), Expect = 5.2
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 63  SRSQMALDWIAREQENPGALGRELDQAEREL--ETARLAGRELRFPKEKKDILMLA 116
            + + A  WI     +   +G+    A R L  E  RLA   +     ++D+L   
Sbjct: 7   GKIEQAQRWIDNPTVDDRGVGQ---AAIRGLVAEGRRLANVMM--GPYRQDLLAKC 57


>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur
          protein, N-terminal domain {Wolinella succinogenes
          [TaxId: 844]}
          Length = 106

 Score = 23.7 bits (51), Expect = 5.4
 Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 3/30 (10%)

Query: 53 GSFQTLEVEVSRSQM---ALDWIAREQENP 79
            FQ  ++E + S      L+ I    +  
Sbjct: 21 PHFQEYKIEEAPSMTIFIVLNMIRETYDPD 50


>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 315

 Score = 23.9 bits (51), Expect = 6.7
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 12  WQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDW 71
             ++Q    E  N    I    P         V +             + +  ++ A D+
Sbjct: 199 KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDF 258

Query: 72  IAREQENPGALGRELDQA-ERELET 95
           +A    +P    R L +  +RELET
Sbjct: 259 LAERGYDPVFGARPLRRVIQRELET 283


>d2moba_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory
           protein B {Methylosinus trichosporium [TaxId: 426]}
          Length = 94

 Score = 22.8 bits (49), Expect = 9.1
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 81  ALGRELDQAERELETARLAGR 101
            LG+     +  +  +   GR
Sbjct: 60  LLGKPFSVYDLLINVSSTVGR 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,348
Number of extensions: 18996
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 10
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)