BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17867
         (81 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5PQQ7|LIX1L_RAT LIX1-like protein OS=Rattus norvegicus GN=Lix1l PE=2 SV=1
          Length = 338

 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 72/74 (97%)

Query: 8   GEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 67
           G  EEADNPNTGIGAFRFMLE+NKG++MLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV
Sbjct: 201 GNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 260

Query: 68  VAHYSNRALDDDMR 81
           +AHYS+RALDDD+R
Sbjct: 261 LAHYSHRALDDDIR 274


>sp|Q8BQ89|LIX1L_MOUSE LIX1-like protein OS=Mus musculus GN=Lix1l PE=2 SV=2
          Length = 337

 Score =  145 bits (366), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 72/74 (97%)

Query: 8   GEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 67
           G  EEADNPNTGIGAFRFMLE+NKG++MLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV
Sbjct: 200 GNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 259

Query: 68  VAHYSNRALDDDMR 81
           +AHYS+RALDDD+R
Sbjct: 260 LAHYSHRALDDDIR 273


>sp|Q8IVB5|LIX1L_HUMAN LIX1-like protein OS=Homo sapiens GN=LIX1L PE=2 SV=1
          Length = 337

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 72/74 (97%)

Query: 8   GEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 67
           G  EEADNPNTGIGAFRFMLE+NKG++MLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV
Sbjct: 200 GNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 259

Query: 68  VAHYSNRALDDDMR 81
           +AHYS+RALDDD+R
Sbjct: 260 LAHYSHRALDDDIR 273


>sp|Q6P566|LIX1_MOUSE Protein limb expression 1 homolog OS=Mus musculus GN=Lix1 PE=2 SV=1
          Length = 282

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 66/75 (88%)

Query: 7   QGEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQE 66
           +G  ++AD+P+T +GA+ +MLE+N G+TMLEFQELMT+FQLLHWNGSLKA+RE +CSRQE
Sbjct: 129 RGTLDDADDPSTSVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQE 188

Query: 67  VVAHYSNRALDDDMR 81
           V+++YS  +LD+ MR
Sbjct: 189 VISYYSQYSLDEKMR 203


>sp|Q8N485|LIX1_HUMAN Protein limb expression 1 homolog OS=Homo sapiens GN=LIX1 PE=2 SV=2
          Length = 282

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 65/74 (87%)

Query: 8   GEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 67
           G  ++AD+P+T +GA+ +MLE+N G+TMLEFQELMT+FQLLHWNGSLKA+RE +CSRQEV
Sbjct: 130 GTLDDADDPSTSVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEV 189

Query: 68  VAHYSNRALDDDMR 81
           +++YS  +LD+ MR
Sbjct: 190 ISYYSQYSLDEKMR 203


>sp|Q8UVV7|LIX1_CHICK Protein limb expression 1 OS=Gallus gallus GN=LIX1 PE=2 SV=1
          Length = 281

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 64/74 (86%)

Query: 8   GEPEEADNPNTGIGAFRFMLETNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEV 67
           G  ++AD+P+T IGA+ +MLE+N G+TMLEFQELM VFQLLHWNGSLKA+RE +CSRQEV
Sbjct: 130 GNLKDADDPSTSIGAYHYMLESNIGKTMLEFQELMIVFQLLHWNGSLKALRETKCSRQEV 189

Query: 68  VAHYSNRALDDDMR 81
           +++YS  +LD+ MR
Sbjct: 190 ISYYSQCSLDEKMR 203


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,313,815
Number of Sequences: 539616
Number of extensions: 893192
Number of successful extensions: 1503
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)