Query psy17867
Match_columns 81
No_of_seqs 27 out of 29
Neff 2.1
Searched_HMMs 29240
Date Sat Aug 17 01:02:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug2_A 2610100B20RIK gene prod 51.8 6.3 0.00022 26.4 1.5 11 37-47 76-86 (95)
2 2lr8_A CAsp8-associated protei 42.8 7.4 0.00025 24.8 0.0 12 35-46 54-65 (70)
3 3aqe_A Receptor activity-modif 27.5 47 0.0016 21.6 2.7 42 31-73 6-47 (91)
4 2b7e_A PRE-mRNA processing pro 26.7 54 0.0018 19.7 2.7 30 16-45 2-31 (59)
5 1ez3_A Syntaxin-1A; three heli 23.5 36 0.0012 20.7 1.5 17 32-48 98-114 (127)
6 2oqo_A Penicillin-binding prot 22.3 68 0.0023 22.6 3.0 32 32-74 88-120 (200)
7 1yyb_A Programmed cell death p 21.1 38 0.0013 17.4 1.1 11 53-63 6-16 (27)
8 2jvw_A Uncharacterized protein 20.0 63 0.0021 21.3 2.2 23 52-74 50-72 (88)
9 2oa4_A SIR5; structure, struct 19.8 49 0.0017 21.4 1.7 19 54-72 43-61 (101)
10 1jyr_A Growth factor receptor- 19.0 45 0.0015 19.7 1.2 16 62-77 71-86 (96)
No 1
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=51.81 E-value=6.3 Score=26.38 Aligned_cols=11 Identities=45% Similarity=0.893 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q psy17867 37 EFQELMTVFQL 47 (81)
Q Consensus 37 EFQElMTVFQL 47 (81)
-||+||..||=
T Consensus 76 RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 76 RFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999983
No 2
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=42.76 E-value=7.4 Score=24.79 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy17867 35 MLEFQELMTVFQ 46 (81)
Q Consensus 35 MLEFQElMTVFQ 46 (81)
..-||+||..||
T Consensus 54 ~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 54 SERFQQLMKLFE 65 (70)
Confidence 566999999997
No 3
>3aqe_A Receptor activity-modifying protein 2; transmembrane, GPCR, adrenomedullin, trafficking, CLR, CGRP, endoplasmic reticulum, disease; 2.00A {Homo sapiens} PDB: 3aqf_A 2xvt_A
Probab=27.54 E-value=47 Score=21.56 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=26.3
Q ss_pred CCccHHHHHHHHHHHHHHhhcchhHHHHhhhhhHHHHHHHhhc
Q psy17867 31 KGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVVAHYSN 73 (81)
Q Consensus 31 ~GrtMLEFQElMTVFQLLHWNGSLKAmRer~CSRQeViahYs~ 73 (81)
+|++|.++.+++- +=+=+.--.++++-+.=|.=-++|.+||.
T Consensus 6 ~g~~~~~y~~~l~-~C~~~F~~~M~~i~~~WC~w~~~i~~Y~~ 47 (91)
T 3aqe_A 6 SGGTVKNYETAVQ-FCWNHYKDQMDPIEKDWCDWAMISRPYST 47 (91)
T ss_dssp ------CHHHHHH-HHHHHHHHHHGGGGGGTTCHHHHHHHHHH
T ss_pred ccChHHHHHHHHH-HHHHHHHHHHHhhcchhcChHHHHHHHHH
Confidence 5899988888776 44444444566666668999999999985
No 4
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.71 E-value=54 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHHhcCCccHHHHHHHHHHH
Q psy17867 16 PNTGIGAFRFMLETNKGRTMLEFQELMTVF 45 (81)
Q Consensus 16 p~t~igaf~~mLesn~GrtMLEFQElMTVF 45 (81)
+.-+..||..||..|.=.+---||..|-.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 455778999999999999999999999887
No 5
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.53 E-value=36 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.6
Q ss_pred CccHHHHHHHHHHHHHH
Q psy17867 32 GRTMLEFQELMTVFQLL 48 (81)
Q Consensus 32 GrtMLEFQElMTVFQLL 48 (81)
+---..|||+|+=||-.
T Consensus 98 ~~L~~kf~e~m~~y~~~ 114 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNAT 114 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33446799999999863
No 6
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=22.31 E-value=68 Score=22.57 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=23.1
Q ss_pred CccHH-HHHHHHHHHHHHhhcchhHHHHhhhhhHHHHHHHhhcc
Q psy17867 32 GRTML-EFQELMTVFQLLHWNGSLKAMRERQCSRQEVVAHYSNR 74 (81)
Q Consensus 32 GrtML-EFQElMTVFQLLHWNGSLKAmRer~CSRQeViahYs~r 74 (81)
+||.. -++|+..-++| |+.-|++|++..|=|.
T Consensus 88 ~rt~~RK~~E~~~A~~l-----------E~~~sK~eILe~YLN~ 120 (200)
T 2oqo_A 88 ERTLERKIKEALLAIKI-----------ERTFDKKKIMELYLNQ 120 (200)
T ss_dssp CCCHHHHHHHHHHHHHH-----------HHHSCHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHH-----------HHHcCHHHHHHHHHhh
Confidence 34433 46666666655 9999999999999764
No 7
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=21.13 E-value=38 Score=17.37 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=9.1
Q ss_pred hhHHHHhhhhh
Q psy17867 53 SLKAMRERQCS 63 (81)
Q Consensus 53 SLKAmRer~CS 63 (81)
+|++||+++|.
T Consensus 6 ELeair~~rl~ 16 (27)
T 1yyb_A 6 ELEALRRQRLA 16 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58899998874
No 8
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=19.97 E-value=63 Score=21.27 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.3
Q ss_pred chhHHHHhhhhhHHHHHHHhhcc
Q psy17867 52 GSLKAMRERQCSRQEVVAHYSNR 74 (81)
Q Consensus 52 GSLKAmRer~CSRQeViahYs~r 74 (81)
.|||-||...--|+.|=+.|=.+
T Consensus 50 SSLKFLRKTpWAR~KVE~lYL~~ 72 (88)
T 2jvw_A 50 SSLKFLRKTDWARERVENIYLKL 72 (88)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHhHHHHHHHHHHHH
Confidence 58999999999999999998643
No 9
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=19.82 E-value=49 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.8
Q ss_pred hHHHHhhhhhHHHHHHHhh
Q psy17867 54 LKAMRERQCSRQEVVAHYS 72 (81)
Q Consensus 54 LKAmRer~CSRQeViahYs 72 (81)
++++++-.+|..|+.++|.
T Consensus 43 V~~v~~g~lS~~EAa~ry~ 61 (101)
T 2oa4_A 43 VRGVIYGLITLAEAKQTYG 61 (101)
T ss_dssp HHHHHHTTCCHHHHHHTTC
T ss_pred HHHHHhCCCCHHHHHHHhC
Confidence 5788999999999999986
No 10
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=19.00 E-value=45 Score=19.74 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.0
Q ss_pred hhHHHHHHHhhccccc
Q psy17867 62 CSRQEVVAHYSNRALD 77 (81)
Q Consensus 62 CSRQeViahYs~r~LD 77 (81)
-|=+|+|+||+..+|.
T Consensus 71 ~sl~~LV~~y~~~~l~ 86 (96)
T 1jyr_A 71 NSLNELVDYHRSTSVS 86 (96)
T ss_dssp SSHHHHHHHTTSSCSC
T ss_pred CCHHHHHHHHhhCCCC
Confidence 4668999999988774
Done!