RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17867
         (81 letters)



>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain,
           ATP-binding, cell cycle, cell division, DNA damage, DNA
           recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
          Length = 558

 Score = 24.2 bits (53), Expect = 5.2
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 23/57 (40%)

Query: 26  MLETNKGRTMLEFQELMT--------------------VFQLLHWNGSL--KAMRER 60
           ++   +G+  + FQ ++                      F +L+ +G      +RER
Sbjct: 302 VIAVKEGK-PMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDGECIDLPLRER 357


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,257,650
Number of extensions: 60407
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)