BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17868
         (208 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
          Length = 260

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 110 VKKQVAKDLMEDILDNCLSSQEKD---QLNSLYSGVEILDFIENKFHVQSSCR---SHFV 163
           VKK VA DL EDIL    +  E +   Q+  +    E   F + +FH+  +CR    HF 
Sbjct: 59  VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQXPFTDERFHI-VTCRIAAHHFP 117

Query: 164 N 164
           N
Sbjct: 118 N 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,903,509
Number of Sequences: 62578
Number of extensions: 143005
Number of successful extensions: 259
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 2
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)