BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17868
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MAARGLLKNPGLFSGANRTPMSCIEEWVSMK---HNHFMTFLHHLVFMCDKLLSSQEKDQ 57
M ARGLL NP +F+G TP+ CI +WV + FM F HL++M +K+ S QEK
Sbjct: 238 MVARGLLANPAMFAGYEETPLKCIWDWVDISLELGTPFMCFHQHLMYMMEKITSRQEKRV 297
Query: 58 LNSLYSGVEILDFIENKF 75
N+L S +LD++ + +
Sbjct: 298 FNALSSTSAVLDYLTDHY 315
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 1 MAARGLLKNPGLFSGANRTPMSCIEEWVSMK---HNHFMTFLHHLVFMCDKLLSSQEKDQ 57
M ARGLL NP +F+G TP+ CI +WV + +M F HL++M +K+ S QEK
Sbjct: 238 MVARGLLANPAMFAGYEETPLKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRV 297
Query: 58 LNSLYSGVEILDFIENKFHV 77
N+L S I+D++ + + +
Sbjct: 298 FNALSSTSAIIDYLTDHYGI 317
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 1 MAARGLLKNPGLFSGANRTPMSCIEE--WVSMKHN-HFMTFLHHLVFMCDKLLSSQEKDQ 57
M+ARGLL+NP LF+G TP C+E W S ++ +F F HHL M ++ + +E+
Sbjct: 230 MSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLNFHLFYHHLTTMMGQMTTKRERMT 289
Query: 58 LNSLYSGVEILDFIENKFHVQSP 80
+ S ++D+++ F V+ P
Sbjct: 290 IPK-DSFASVMDWLDEHFVVRRP 311
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 1 MAARGLLKNPGLFSGANRTPMSCIEEWVSMKHNHFMTFL---HHLVFMCDKLLSSQEKDQ 57
MAA GLL NP LF+G TP C+E ++ + + + +L HL +M + S+Q++
Sbjct: 205 MAANGLLDNPALFAGHEHTPSDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRV 264
Query: 58 LNSLYSGVEILDFIENKFHV 77
N L + I F+ N +
Sbjct: 265 FNELNGRLAIDHFLNNLLDI 284
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 1 MAARGLLKNPGLFSGANRTPMSCIEE---W-VSMKHNHFMTFLHHLVFMCDKL-LSSQEK 55
MA RGLL NP LF+G P CIE+ W + F HHL M + + L
Sbjct: 253 MAVRGLLSNPALFAGYTTCPWGCIEKFCYWALEFGGLPFQLAQHHLYCMLENMELKKSLL 312
Query: 56 DQLNSLYSGVEILDFIENKF 75
++ +L + + ++D+ F
Sbjct: 313 KKMMNLKNYISLIDWFNKTF 332
>sp|O68006|BACA_BACLI Bacitracin synthase 1 OS=Bacillus licheniformis GN=bacA PE=3 SV=1
Length = 5255
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 104 QEEMSSVKK--QVAKDLMEDILDNCLSSQEKDQLNSLYS----GVEILDFIENKFHV-QS 156
Q + S++++ Q K+ +E I+D+C+ + D S Y G+E L+ I++K+ Q
Sbjct: 4147 QYQTSTIEQLNQSFKENLEKIVDHCVDKEGSDMTPSDYGDVSLGLEELELIKDKYSAFQI 4206
Query: 157 SCRSHFVNLNKGSKYE---EESEGKFFQEEMSSVKKQVAKDLTED 198
N+ KG + +++ G +FQ+ + +K +V D+ E+
Sbjct: 4207 EKIYPLANMQKGMLFHNAMDQTSGAYFQQIVIKLKGRVHPDILEE 4251
>sp|Q5F408|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2
SV=1
Length = 748
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 77 VQSPCRSHFVNLNKGSKYEEESEGKFFQEEMSS---VKKQVAKDLMEDILDNCLSSQEKD 133
+Q+ +S F L +E + K EE+S + + AKDL+ D LD+ SQ D
Sbjct: 155 IQNAVKSAFDPL------QEAVQAKLPAEEISRCHEILLEEAKDLLSDWLDSKFGSQVTD 208
Query: 134 QLNSLYSGVEILDFIENKFH 153
NS++S E+ F E +FH
Sbjct: 209 --NSIFS--ELPKFWEGEFH 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,050,986
Number of Sequences: 539616
Number of extensions: 3133277
Number of successful extensions: 10286
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 10220
Number of HSP's gapped (non-prelim): 89
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)