Query psy17868
Match_columns 208
No_of_seqs 122 out of 201
Neff 3.0
Searched_HMMs 46136
Date Sat Aug 17 01:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2335|consensus 99.7 7.7E-18 1.7E-22 154.5 6.0 81 1-81 231-321 (358)
2 TIGR00737 nifR3_yhdG putative 97.9 2.3E-05 5.1E-10 68.9 5.5 75 1-75 220-315 (319)
3 PRK10415 tRNA-dihydrouridine s 97.6 0.0001 2.2E-09 65.9 5.4 75 1-75 222-317 (321)
4 PF01207 Dus: Dihydrouridine s 97.1 8.3E-05 1.8E-09 66.0 -0.9 74 1-75 211-305 (309)
5 TIGR00742 yjbN tRNA dihydrouri 97.1 0.00037 8.1E-09 62.7 2.9 74 1-74 221-312 (318)
6 PRK10550 tRNA-dihydrouridine s 96.7 0.0034 7.3E-08 56.4 5.9 73 1-73 222-309 (312)
7 COG0042 tRNA-dihydrouridine sy 96.3 0.0094 2E-07 53.9 5.9 74 1-74 226-317 (323)
8 PRK11815 tRNA-dihydrouridine s 94.3 0.022 4.7E-07 51.4 1.6 74 1-74 231-322 (333)
9 KOG1733|consensus 67.8 11 0.00024 30.1 4.5 40 84-127 4-47 (97)
10 PF08628 Nexin_C: Sorting nexi 50.6 1.1E+02 0.0024 23.2 7.6 47 35-81 8-55 (113)
11 KOG1733|consensus 49.0 24 0.00052 28.3 3.4 24 182-205 21-48 (97)
12 PF11815 DUF3336: Domain of un 45.0 24 0.00053 28.7 3.1 28 5-32 91-118 (145)
13 COG2973 TrpR Trp operon repres 40.6 68 0.0015 26.0 4.9 41 102-142 13-53 (103)
14 PF08278 DnaG_DnaB_bind: DNA p 37.8 59 0.0013 24.7 4.1 44 95-138 79-126 (127)
15 PF07862 Nif11: Nitrogen fixat 26.9 1.8E+02 0.0039 19.1 4.5 33 42-74 6-39 (49)
16 PF11496 HDA2-3: Class II hist 22.2 78 0.0017 28.8 2.7 78 83-174 75-156 (297)
17 PF00123 Hormone_2: Peptide ho 22.0 1.6E+02 0.0035 18.5 3.3 25 98-123 2-27 (28)
18 KOG2334|consensus 21.1 1.1E+02 0.0024 30.5 3.6 32 1-32 240-272 (477)
No 1
>KOG2335|consensus
Probab=99.71 E-value=7.7e-18 Score=154.51 Aligned_cols=81 Identities=38% Similarity=0.609 Sum_probs=74.4
Q ss_pred CccccCCcCCcCC--CCCCCChhHHHHHHHHHhh-h---h-HHHHHHHHHHHHhhhcCHH--HHHHHHccCCHHHHHHHH
Q psy17868 1 MAARGLLKNPGLF--SGANRTPMSCIEEWVSMKH-N---H-FMTFLHHLVFMCDKLLSSQ--EKDQLNSLYSGVEILDFI 71 (208)
Q Consensus 1 MSARGLLaNPALF--AGy~~TPWEcVeEYLdLa~-l---P-FslIhhHLfkMLe~~LsKd--LR~eLNsL~S~~eVVDfL 71 (208)
|||||+|+|||+| +||.++||+|+++|++++. . + ++++|+||++|++++++.. +|..+|.+++...+++|+
T Consensus 231 M~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~l 310 (358)
T KOG2335|consen 231 MSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDFL 310 (358)
T ss_pred EecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHHH
Confidence 9999999999999 9999999999999999999 3 3 9999999999999999764 799999999999999999
Q ss_pred h-hhccccCCC
Q psy17868 72 E-NKFHVQSPC 81 (208)
Q Consensus 72 d-e~f~LkR~~ 81 (208)
. .++.+++.+
T Consensus 311 ~~~~~~v~~~~ 321 (358)
T KOG2335|consen 311 EELVLMVRKRV 321 (358)
T ss_pred HHHHHHHHhhh
Confidence 9 778776644
No 2
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.86 E-value=2.3e-05 Score=68.93 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=59.6
Q ss_pred CccccCCcCCcCCC--------CCCCC------hhHHHHHHHHHhh------hhHHHHHHHHHHHHhhh-cCHHHHHHHH
Q psy17868 1 MAARGLLKNPGLFS--------GANRT------PMSCIEEWVSMKH------NHFMTFLHHLVFMCDKL-LSSQEKDQLN 59 (208)
Q Consensus 1 MSARGLLaNPALFA--------Gy~~T------PWEcVeEYLdLa~------lPFslIhhHLfkMLe~~-LsKdLR~eLN 59 (208)
|.+||+|+||.||. |...+ ..+++.+|++++. .++..+++|+.+++... ..++.|..++
T Consensus 220 migR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~ 299 (319)
T TIGR00737 220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGFPGNAALRQTLN 299 (319)
T ss_pred EEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 78999999999986 32221 2366778887764 45788999999998655 4678999999
Q ss_pred ccCCHHHHHHHHhhhc
Q psy17868 60 SLYSGVEILDFIENKF 75 (208)
Q Consensus 60 sL~S~~eVVDfLde~f 75 (208)
++++..++.+++++-+
T Consensus 300 ~~~~~~~~~~~~~~~~ 315 (319)
T TIGR00737 300 HASSFQEVKQLLDDFF 315 (319)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 3
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.59 E-value=0.0001 Score=65.85 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=56.4
Q ss_pred CccccCCcCCcCCCCC----------CCChh-HH---HHHHHHHhh------hhHHHHHHHHHHHHhhh-cCHHHHHHHH
Q psy17868 1 MAARGLLKNPGLFSGA----------NRTPM-SC---IEEWVSMKH------NHFMTFLHHLVFMCDKL-LSSQEKDQLN 59 (208)
Q Consensus 1 MSARGLLaNPALFAGy----------~~TPW-Ec---VeEYLdLa~------lPFslIhhHLfkMLe~~-LsKdLR~eLN 59 (208)
|.+||+|.||.||... .+++| +. +.++++... .++..+|.|+.+++... -.+++|..++
T Consensus 222 miGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~~~ 301 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 (321)
T ss_pred EEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7899999999999542 23345 33 333333322 46788999999998877 4678999999
Q ss_pred ccCCHHHHHHHHhhhc
Q psy17868 60 SLYSGVEILDFIENKF 75 (208)
Q Consensus 60 sL~S~~eVVDfLde~f 75 (208)
.++|+.++.+++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~ 317 (321)
T PRK10415 302 AIEDASEQLEALEAYF 317 (321)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 4
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.10 E-value=8.3e-05 Score=65.96 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=40.9
Q ss_pred CccccCCcCCcCCCC-------CCCChhHHHHHHHHHhh-------------hhHHHHHHHHHHHHhhh-cCHHHHHHHH
Q psy17868 1 MAARGLLKNPGLFSG-------ANRTPMSCIEEWVSMKH-------------NHFMTFLHHLVFMCDKL-LSSQEKDQLN 59 (208)
Q Consensus 1 MSARGLLaNPALFAG-------y~~TPWEcVeEYLdLa~-------------lPFslIhhHLfkMLe~~-LsKdLR~eLN 59 (208)
|.|||+|.||.||++ .....+. +.+++++.. ..+..++.|+..++... ..+..|..++
T Consensus 211 MigRgal~nP~lf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~l~ 289 (309)
T PF01207_consen 211 MIGRGALGNPWLFREIDQIKEGEPEPFPP-IAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKGFPGARKFRRELN 289 (309)
T ss_dssp EESHHHCC-CCHHCHHHCHHHHTT--S---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTTSTTHHHHHHHHC
T ss_pred EEchhhhhcCHHhhhhhhhccCCCCCCCc-hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 899999999999993 2222222 333333333 22233333333333332 1357999999
Q ss_pred ccCCHHHHHHHHhhhc
Q psy17868 60 SLYSGVEILDFIENKF 75 (208)
Q Consensus 60 sL~S~~eVVDfLde~f 75 (208)
++.+..++.+.|++.|
T Consensus 290 ~~~~~~e~~~~l~~~~ 305 (309)
T PF01207_consen 290 KCKTLEEFLELLEEAF 305 (309)
T ss_dssp CH-SHHHHHHHH----
T ss_pred hhCCHHHHhhhhcccc
Confidence 9999999999998544
No 5
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.07 E-value=0.00037 Score=62.72 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=55.5
Q ss_pred CccccCCcCCcCCCCC----------CCChhHHHHHHHHHhh------hhHHHHHHHHHHHHhhhc-CHHHHHHHHccCC
Q psy17868 1 MAARGLLKNPGLFSGA----------NRTPMSCIEEWVSMKH------NHFMTFLHHLVFMCDKLL-SSQEKDQLNSLYS 63 (208)
Q Consensus 1 MSARGLLaNPALFAGy----------~~TPWEcVeEYLdLa~------lPFslIhhHLfkMLe~~L-sKdLR~eLNsL~S 63 (208)
|.+||+|.||.||... .+++++.++.|++++. ..+..+|.|+.+.+...- .++.|.+++...+
T Consensus 221 MigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~ 300 (318)
T TIGR00742 221 MVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQGKPGAKQWRRYLSENAP 300 (318)
T ss_pred EECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHccCCCHHHHHHHHHhccc
Confidence 8899999999999632 2466789888888877 357789999999877653 5789999988666
Q ss_pred H-HHHHHHHhhh
Q psy17868 64 G-VEILDFIENK 74 (208)
Q Consensus 64 ~-~eVVDfLde~ 74 (208)
. ....++|+..
T Consensus 301 ~~~~~~~~~~~~ 312 (318)
T TIGR00742 301 KAGAGIEVLETA 312 (318)
T ss_pred CCCCcHHHHHHH
Confidence 4 3444555543
No 6
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.71 E-value=0.0034 Score=56.43 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=53.4
Q ss_pred CccccCCcCCcCCCC----CCCChh-H---HHHHHHHHhh------hhHHHHHHHHHHHHhhhc-CHHHHHHHHccCCHH
Q psy17868 1 MAARGLLKNPGLFSG----ANRTPM-S---CIEEWVSMKH------NHFMTFLHHLVFMCDKLL-SSQEKDQLNSLYSGV 65 (208)
Q Consensus 1 MSARGLLaNPALFAG----y~~TPW-E---cVeEYLdLa~------lPFslIhhHLfkMLe~~L-sKdLR~eLNsL~S~~ 65 (208)
|.+||+|.||.||.. ...++| + .+.+|+++.. ....-+|.|+.+++...- .++.|..++.+++..
T Consensus 222 miGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~~~~~ 301 (312)
T PRK10550 222 MIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIRALNNSP 301 (312)
T ss_pred EEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHH
Confidence 789999999999973 322334 2 3456666643 123447889988877664 468899999999999
Q ss_pred HHHHHHhh
Q psy17868 66 EILDFIEN 73 (208)
Q Consensus 66 eVVDfLde 73 (208)
++.+.+++
T Consensus 302 e~~~~~~~ 309 (312)
T PRK10550 302 DIARAIQA 309 (312)
T ss_pred HHHHHHHh
Confidence 99888764
No 7
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.0094 Score=53.92 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=55.8
Q ss_pred CccccCCcCCcCCC-------CCCC-Chh----HHHHHHHHHhh-----hhHHHHHHHHHHHHhhhc-CHHHHHHHHccC
Q psy17868 1 MAARGLLKNPGLFS-------GANR-TPM----SCIEEWVSMKH-----NHFMTFLHHLVFMCDKLL-SSQEKDQLNSLY 62 (208)
Q Consensus 1 MSARGLLaNPALFA-------Gy~~-TPW----EcVeEYLdLa~-----lPFslIhhHLfkMLe~~L-sKdLR~eLNsL~ 62 (208)
|.+||.+.||.||. |... .+| +++.+|++... .++..++.|+.+++...- .++.|..++++.
T Consensus 226 MigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~~~ 305 (323)
T COG0042 226 MIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGLPGARELRRALNKAE 305 (323)
T ss_pred EEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCccHHHHHHHHhccC
Confidence 89999999999976 3332 334 34445555544 567889999999988875 568899999999
Q ss_pred CHHHHHHHHhhh
Q psy17868 63 SGVEILDFIENK 74 (208)
Q Consensus 63 S~~eVVDfLde~ 74 (208)
+..++.+.|+..
T Consensus 306 ~~~~~~~~l~~~ 317 (323)
T COG0042 306 DGAEVRRALEAV 317 (323)
T ss_pred cHHHHHHHHHHH
Confidence 999987777654
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=94.30 E-value=0.022 Score=51.37 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=52.4
Q ss_pred CccccCCcCCcCCCC-------CC---CChhHHHHHHHHHhh-h-----hHHHHHHHHHHHHhhhc-CHHHHHHHHccCC
Q psy17868 1 MAARGLLKNPGLFSG-------AN---RTPMSCIEEWVSMKH-N-----HFMTFLHHLVFMCDKLL-SSQEKDQLNSLYS 63 (208)
Q Consensus 1 MSARGLLaNPALFAG-------y~---~TPWEcVeEYLdLa~-l-----PFslIhhHLfkMLe~~L-sKdLR~eLNsL~S 63 (208)
|.+||+|.||.+|.. .. +++-+.++.|++++. . ....+|.|+.+.+...- .+..|.+++...+
T Consensus 231 mIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~ 310 (333)
T PRK11815 231 MIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLFQGLPGARAWRRYLSENAH 310 (333)
T ss_pred EEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 789999999999963 22 233488888888877 2 36789999999887664 5678999987755
Q ss_pred H-HHHHHHHhhh
Q psy17868 64 G-VEILDFIENK 74 (208)
Q Consensus 64 ~-~eVVDfLde~ 74 (208)
. ...+|+|++-
T Consensus 311 ~~~~~~~~~~~~ 322 (333)
T PRK11815 311 KPGAGIEVLEEA 322 (333)
T ss_pred cCCCCHHHHHHH
Confidence 2 2233666543
No 9
>KOG1733|consensus
Probab=67.84 E-value=11 Score=30.13 Aligned_cols=40 Identities=33% Similarity=0.570 Sum_probs=29.3
Q ss_pred CCCcCccCCCccccccchhhHHHHHHHHHHHH----HHHHHHHHHhhh
Q psy17868 84 HFVNLNKGSKYEEESEGKFFQEEMSSVKKQVA----KDLMEDILDNCL 127 (208)
Q Consensus 84 ~f~p~~~~~~~~~~sdg~ff~~~~~~~~~~~~----~~~~~~~~~~~~ 127 (208)
.|++....+..++...| ++|+.||.|+| ..|+.+|-++|.
T Consensus 4 ~fg~~~g~~~s~~~~~~----~~m~qVkqqlAvAnAqeLv~kisekCf 47 (97)
T KOG1733|consen 4 IFGGQKGGAGSSKTTEG----ELMNQVKQQLAVANAQELVSKISEKCF 47 (97)
T ss_pred cccCcccCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665545555555566 89999999985 578888888885
No 10
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=50.62 E-value=1.1e+02 Score=23.24 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHccCCHHHHHHHHhh-hccccCCC
Q psy17868 35 FMTFLHHLVFMCDKLLSSQEKDQLNSLYSGVEILDFIEN-KFHVQSPC 81 (208)
Q Consensus 35 FslIhhHLfkMLe~~LsKdLR~eLNsL~S~~eVVDfLde-~f~LkR~~ 81 (208)
+..++..+...++..+++..++.++.+.+-+.+.++|.. +-.+.+.|
T Consensus 8 ~~~l~~~l~~~~g~tI~r~i~~~v~~l~se~~v~~~i~~l~~~lwP~g 55 (113)
T PF08628_consen 8 LAVLQQILRQTFGSTIERKIRDQVEWLTSEEQVARYIQLLRESLWPNG 55 (113)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhCCCC
Confidence 345677777777788899999999999998888888865 33445544
No 11
>KOG1733|consensus
Probab=48.95 E-value=24 Score=28.28 Aligned_cols=24 Identities=42% Similarity=0.780 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH----hHhhHHHhhhhhc
Q psy17868 182 EEMSSVKKQVA----KDLTEDILDNCFN 205 (208)
Q Consensus 182 ~~~~~~~~~~~----~~~~~~~~~~~~~ 205 (208)
+-|++||.|+| ..|..+|-++||+
T Consensus 21 ~~m~qVkqqlAvAnAqeLv~kisekCf~ 48 (97)
T KOG1733|consen 21 ELMNQVKQQLAVANAQELVSKISEKCFD 48 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66999999985 5788899999996
No 12
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=45.04 E-value=24 Score=28.74 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.6
Q ss_pred cCCcCCcCCCCCCCChhHHHHHHHHHhh
Q psy17868 5 GLLKNPGLFSGANRTPMSCIEEWVSMKH 32 (208)
Q Consensus 5 GLLaNPALFAGy~~TPWEcVeEYLdLa~ 32 (208)
|.+.||.||+-....+-.+|++|++-+.
T Consensus 91 ggi~n~~LY~~s~~GTK~lIe~Yi~ev~ 118 (145)
T PF11815_consen 91 GGIGNPRLYSHSYSGTKRLIEEYIDEVV 118 (145)
T ss_pred cccCCHHHHHHccccchHHHHHHHHHHH
Confidence 6779999998766667789999999877
No 13
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=40.60 E-value=68 Score=25.99 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchhhHhhhhhhhhch
Q psy17868 102 FFQEEMSSVKKQVAKDLMEDILDNCLSSQEKDQLNSLYSGV 142 (208)
Q Consensus 102 ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (208)
=|+.|..-+|+.++.|++.+||.-.|+..|.+.|-.-+.=|
T Consensus 13 ~W~~fv~ll~~a~~~d~~~~lL~llLTpdEReal~~Rv~Iv 53 (103)
T COG2973 13 EWLAFVDLLKKAYQEDLHQPLLTLLLTPDEREALGTRVRIV 53 (103)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence 36789999999999999999999999999999876654433
No 14
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=37.80 E-value=59 Score=24.70 Aligned_cols=44 Identities=25% Similarity=0.445 Sum_probs=33.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHh----hhchhhHhhhhhh
Q psy17868 95 EEESEGKFFQEEMSSVKKQVAKDLMEDILDN----CLSSQEKDQLNSL 138 (208)
Q Consensus 95 ~~~sdg~ff~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 138 (208)
+++....+|..-+..+.++..+.-++.+... =|+.+||.+|+.|
T Consensus 79 ~~~~~~~ef~d~l~~L~~~~~~~~i~~L~~k~~~~~Lt~eEk~el~~L 126 (127)
T PF08278_consen 79 DEEDIEQEFQDALARLQEQALERRIEELKAKPRRGGLTDEEKQELRRL 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCHHHHHHHHHh
Confidence 6777889999999999888877766666544 3899999999876
No 15
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=26.86 E-value=1.8e+02 Score=19.11 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHhhhc-CHHHHHHHHccCCHHHHHHHHhhh
Q psy17868 42 LVFMCDKLL-SSQEKDQLNSLYSGVEILDFIENK 74 (208)
Q Consensus 42 LfkMLe~~L-sKdLR~eLNsL~S~~eVVDfLde~ 74 (208)
|...+...- ++++|.+++.+.+..+++.+..++
T Consensus 6 l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~ 39 (49)
T PF07862_consen 6 LKAFLEKVKSDPELREQLKACQNPEEVVALAREA 39 (49)
T ss_pred HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHc
Confidence 444444443 678999999999999999988764
No 16
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=22.25 E-value=78 Score=28.81 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=37.0
Q ss_pred CCCCc----CccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhchhhHhhhhhhhhchhHhhhhhcccchhccc
Q psy17868 83 SHFVN----LNKGSKYEEESEGKFFQEEMSSVKKQVAKDLMEDILDNCLSSQEKDQLNSLYSGVEILDFIENKFHVQSSC 158 (208)
Q Consensus 83 ~~f~p----~~~~~~~~~~sdg~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
.||-| ..+...|-+.+-||| |+-.+|+.-+++++-.... -.+-=+-.++..+|.||.-+-- .
T Consensus 75 dH~mPk~ll~~e~~~~~~~tS~KF----------~~L~~Li~~li~~~~~~~~-~~ilIv~~~~k~ldllE~~llG---k 140 (297)
T PF11496_consen 75 DHYMPKQLLLSEPAEWLAYTSGKF----------QFLNDLIDSLIDRDRREYP-LHILIVSRSGKELDLLEGLLLG---K 140 (297)
T ss_dssp -TT--S-S-STTHHHHHHHT-HHH----------HHHHHHHHHH-----TTSS-EEEEEEE-STHHHHHHHHHHTT---S
T ss_pred cccCccccccchHHHHHHHcCchH----------HHHHHHHHHHHhhhcccCC-ceEEEEecCccHHHHHHHHHcc---C
Confidence 58988 356777888888887 6777888888775533322 1222233456678888764432 2
Q ss_pred cccccccCCCCcchhh
Q psy17868 159 RSHFVNLNKGSKYEEE 174 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (208)
.-++.++...+-|.+.
T Consensus 141 ~~~~kr~sg~~l~~~~ 156 (297)
T PF11496_consen 141 KLNYKRYSGESLYDEK 156 (297)
T ss_dssp SSEEEESSS--S--S-
T ss_pred CeeEEecCCCCCcCcc
Confidence 3334444444444443
No 17
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=21.96 E-value=1.6e+02 Score=18.50 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=15.1
Q ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSV-KKQVAKDLMEDIL 123 (208)
Q Consensus 98 sdg~ff~~~~~~~-~~~~~~~~~~~~~ 123 (208)
+||-| |+-+|++ ..+-||+.++.++
T Consensus 2 adg~f-tsdys~~L~~~aak~fl~~L~ 27 (28)
T PF00123_consen 2 ADGTF-TSDYSKYLDQLAAKKFLQWLM 27 (28)
T ss_dssp BTTTH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred Ccccc-cHHHHHHHHHHHHHHHHHHHh
Confidence 56765 5555554 4556777777654
No 18
>KOG2334|consensus
Probab=21.11 E-value=1.1e+02 Score=30.46 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.6
Q ss_pred CccccCCcCCcCCCCCCCChh-HHHHHHHHHhh
Q psy17868 1 MAARGLLKNPGLFSGANRTPM-SCIEEWVSMKH 32 (208)
Q Consensus 1 MSARGLLaNPALFAGy~~TPW-EcVeEYLdLa~ 32 (208)
|.||.-..||..|--.-..|| +.+++||.++.
T Consensus 240 miAR~A~~n~SiF~~eG~~~~~~~~~~fl~~a~ 272 (477)
T KOG2334|consen 240 MIARAAESNPSIFREEGCLSEKEVIREFLRLAV 272 (477)
T ss_pred hhhHhhhcCCceeeecCCchHHHHHHHHHHHHH
Confidence 789999999999944445566 89999999987
Done!