Query psy17868
Match_columns 208
No_of_seqs 122 out of 201
Neff 3.0
Searched_HMMs 29240
Date Sat Aug 17 01:03:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vhn_A Putative flavin oxidore 97.4 0.0001 3.5E-09 63.3 3.7 77 1-77 211-307 (318)
2 3b0p_A TRNA-dihydrouridine syn 96.3 0.00067 2.3E-08 59.5 0.3 74 1-74 223-312 (350)
3 3iol_B Glucagon; receptor-liga 40.8 33 0.0011 21.0 3.5 26 98-123 2-27 (31)
4 1t5q_A Gastric inhibitory poly 40.1 39 0.0013 20.8 3.7 27 98-124 2-28 (30)
5 2g49_C Glucagon preproprotein; 37.3 39 0.0013 20.7 3.4 26 98-123 2-27 (29)
6 1jrj_A Exendin-4; Trp-CAGE, GL 31.9 60 0.0021 21.1 3.8 27 98-124 2-28 (39)
7 2yus_A SWI/SNF-related matrix- 27.9 18 0.00062 25.8 0.9 33 143-177 42-74 (79)
8 2d2p_A Pituitary adenylate cyc 26.8 1E+02 0.0035 19.9 4.2 30 98-129 2-32 (39)
9 4h62_V Mediator of RNA polymer 24.9 29 0.00099 21.6 1.3 11 118-128 13-23 (31)
10 2k10_A Ranatuerin-2CSA; molecu 24.4 37 0.0013 20.9 1.7 20 106-125 2-24 (32)
11 2rrh_A VIP peptides; peptide h 21.4 1.3E+02 0.0043 18.2 3.6 25 98-123 2-27 (29)
12 2l63_A GLP-2, glucagon-like pe 20.9 71 0.0024 20.1 2.5 25 98-123 2-27 (33)
No 1
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=97.38 E-value=0.0001 Score=63.28 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=60.7
Q ss_pred CccccCCcCCcCCC--------CCCC--Ch---hHHHHHHHHHhh------hhHHHHHHHHHHHHhhhc-CHHHHHHHHc
Q psy17868 1 MAARGLLKNPGLFS--------GANR--TP---MSCIEEWVSMKH------NHFMTFLHHLVFMCDKLL-SSQEKDQLNS 60 (208)
Q Consensus 1 MSARGLLaNPALFA--------Gy~~--TP---WEcVeEYLdLa~------lPFslIhhHLfkMLe~~L-sKdLR~eLNs 60 (208)
|.+||+|.||.||. |..+ ++ ++++.+|++++. ..+..++.|+.+|+...- .++.|..++.
T Consensus 211 ~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 290 (318)
T 1vhn_A 211 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMK 290 (318)
T ss_dssp EESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTTCTTHHHHHHHHTT
T ss_pred EECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 67899999999985 6211 21 467778888875 257789999999986653 5789999999
Q ss_pred cCCHHHHHHHHhhhccc
Q psy17868 61 LYSGVEILDFIENKFHV 77 (208)
Q Consensus 61 L~S~~eVVDfLde~f~L 77 (208)
+++..++.+.|++.+.-
T Consensus 291 ~~~~~~~~~~~~~~~~~ 307 (318)
T 1vhn_A 291 IEEVQILKEMFYNFIKE 307 (318)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987643
No 2
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=96.33 E-value=0.00067 Score=59.50 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=59.3
Q ss_pred CccccCCcCCcCCCCC---------CCChhHHHHHHHHHhh------hhHHHHHHHHHHHHhhhc-CHHHHHHHHccCCH
Q psy17868 1 MAARGLLKNPGLFSGA---------NRTPMSCIEEWVSMKH------NHFMTFLHHLVFMCDKLL-SSQEKDQLNSLYSG 64 (208)
Q Consensus 1 MSARGLLaNPALFAGy---------~~TPWEcVeEYLdLa~------lPFslIhhHLfkMLe~~L-sKdLR~eLNsL~S~ 64 (208)
|.+||+|.||.||... .+++.++++.|+++.. .+...++.|+.++++..- .+..|..|+...+.
T Consensus 223 ~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~kh~~~~~~g~~~~~~~r~~l~~~~~~ 302 (350)
T 3b0p_A 223 MLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSL 302 (350)
T ss_dssp EECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHHTCCHHHHHTTSTTTTTTSTTHHHHHHHHHHHCSH
T ss_pred EECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHccCCCHHHHHHHHHCCCCH
Confidence 6789999999998742 2355688888888877 346789999998877664 56899999999999
Q ss_pred HHHHHHHhhh
Q psy17868 65 VEILDFIENK 74 (208)
Q Consensus 65 ~eVVDfLde~ 74 (208)
.++.+.|++-
T Consensus 303 ~~~~~~l~~~ 312 (350)
T 3b0p_A 303 QALDRALRLM 312 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888773
No 3
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=40.79 E-value=33 Score=21.03 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=18.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSVKKQVAKDLMEDIL 123 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~~~~~~~~~~~ 123 (208)
+||-|-.++-+-+..+.||+.++-++
T Consensus 2 adGtftsD~s~~L~~~~ak~Fv~wL~ 27 (31)
T 3iol_B 2 AEGTFTSDVSSYLEGQAAKEFIAWLV 27 (31)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 58998777777777888888776543
No 4
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=40.11 E-value=39 Score=20.85 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=18.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSVKKQVAKDLMEDILD 124 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~~~~~~~~~~~~ 124 (208)
|||-|=.++-.-+..+.||+.++-++.
T Consensus 2 sdgtFTsdySk~l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 2 AEGTFISDYSIAMDKIHQQDFVNWLLA 28 (30)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHc
Confidence 677765555555667778888877763
No 5
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=37.29 E-value=39 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSVKKQVAKDLMEDIL 123 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~~~~~~~~~~~ 123 (208)
+||-|=.++-+-+..+.||+.++-++
T Consensus 2 adGtFTsdysk~l~~~aak~fv~wL~ 27 (29)
T 2g49_C 2 SQGTFTSDYSKYLDSRRAQDFVQWLM 27 (29)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHh
Confidence 67876666666667778888877664
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=31.86 E-value=60 Score=21.15 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSVKKQVAKDLMEDILD 124 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~~~~~~~~~~~~ 124 (208)
+||-|=.++-+-++.+.||+.++-++.
T Consensus 2 sdGtFTsdyS~~l~~~aak~fv~wL~~ 28 (39)
T 1jrj_A 2 GEGTFTSDLSKQMEEEAVRLFIEWLKN 28 (39)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHc
Confidence 678765555555667778888776653
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=27.91 E-value=18 Score=25.75 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=23.7
Q ss_pred hHhhhhhcccchhccccccccccCCCCcchhhccc
Q psy17868 143 EILDFIENKFHVQSSCRSHFVNLNKGSKYEEESEG 177 (208)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (208)
.|-.++.++- ...||.||.++.-...|.+++.|
T Consensus 42 ~IA~~v~~RT--~~qcr~r~~~~~i~d~~~~~~~~ 74 (79)
T 2yus_A 42 KVSEHVGSRT--QDECILHFLRLPIEDPYLENSDS 74 (79)
T ss_dssp HHHHHHSSCC--HHHHHHHHTTSCCCCSSCCCCCC
T ss_pred HHHHHcCCCC--HHHHHHHHHHhcccccccccCCC
Confidence 4556665543 34599999999888888777765
No 8
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=26.83 E-value=1e+02 Score=19.87 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred ccchhhHHHHHHHHHH-HHHHHHHHHHHhhhch
Q psy17868 98 SEGKFFQEEMSSVKKQ-VAKDLMEDILDNCLSS 129 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~-~~~~~~~~~~~~~~~~ 129 (208)
+||- ||+-+|.+.+| -|++.+..++ ++-..
T Consensus 2 sdg~-FTs~yskyl~~~~ak~fl~~l~-~kr~~ 32 (39)
T 2d2p_A 2 SDGI-FTDSYSRYRKQMAVKKYLAAVL-GKRYK 32 (39)
T ss_dssp CTTT-HHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCcc-chHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence 5665 56666766665 5688888888 55443
No 9
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=24.91 E-value=29 Score=21.59 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=9.0
Q ss_pred HHHHHHHhhhc
Q psy17868 118 LMEDILDNCLS 128 (208)
Q Consensus 118 ~~~~~~~~~~~ 128 (208)
-+|.+||||+.
T Consensus 13 qieelldncie 23 (31)
T 4h62_V 13 QIEELLDNCIE 23 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46889999975
No 10
>2k10_A Ranatuerin-2CSA; molecular modelling, helix-turn-helix, disulfide bond, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=24.44 E-value=37 Score=20.86 Aligned_cols=20 Identities=50% Similarity=0.612 Sum_probs=15.0
Q ss_pred HHHHHH---HHHHHHHHHHHHHh
Q psy17868 106 EMSSVK---KQVAKDLMEDILDN 125 (208)
Q Consensus 106 ~~~~~~---~~~~~~~~~~~~~~ 125 (208)
+++.+| |.+||+....+||.
T Consensus 2 ~~~~~K~~~K~~aK~~~~~~L~~ 24 (32)
T 2k10_A 2 ILSSFKGVAKGVAKDLAGKLLET 24 (32)
T ss_dssp HHHHHHHHGGGHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 466776 78888888887764
No 11
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=21.39 E-value=1.3e+02 Score=18.16 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=15.6
Q ss_pred ccchhhHHHHHHHHHH-HHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSSVKKQ-VAKDLMEDIL 123 (208)
Q Consensus 98 sdg~ff~~~~~~~~~~-~~~~~~~~~~ 123 (208)
+||- ||+-+|++.+| .||+.++.++
T Consensus 2 sdg~-FTsdysk~l~~~~ak~fl~~l~ 27 (29)
T 2rrh_A 2 SDAV-FTDNYTRLRKQMAVKKYLNSIL 27 (29)
T ss_dssp CTHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHHh
Confidence 4665 56666666555 5677776665
No 12
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.93 E-value=71 Score=20.09 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=15.2
Q ss_pred ccchhhHHHHHH-HHHHHHHHHHHHHH
Q psy17868 98 SEGKFFQEEMSS-VKKQVAKDLMEDIL 123 (208)
Q Consensus 98 sdg~ff~~~~~~-~~~~~~~~~~~~~~ 123 (208)
+||-| |+-+|+ +..+.||+.++-++
T Consensus 2 aDGtF-Tsd~s~~l~~~aak~fl~wL~ 27 (33)
T 2l63_A 2 ADGSF-SDEMNTILDNLAARDFINWLI 27 (33)
T ss_dssp CCSHH-HHGGGHHHHHHHHHHHHHHHH
T ss_pred CCCcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 57775 555555 45566777766554
Done!